Multiple sequence alignment - TraesCS2B01G038300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G038300 chr2B 100.000 4037 0 0 1 4037 17823475 17827511 0.000000e+00 7456.0
1 TraesCS2B01G038300 chr2B 96.748 246 7 1 3354 3599 17835785 17836029 3.760000e-110 409.0
2 TraesCS2B01G038300 chr2B 86.957 276 34 1 1879 2152 17834734 17835009 3.920000e-80 309.0
3 TraesCS2B01G038300 chr2B 82.192 146 14 2 2893 3038 17835228 17835361 9.170000e-22 115.0
4 TraesCS2B01G038300 chr2D 93.293 2803 129 22 381 3162 11419698 11422462 0.000000e+00 4080.0
5 TraesCS2B01G038300 chr2D 82.003 1178 178 18 886 2037 11429620 11430789 0.000000e+00 970.0
6 TraesCS2B01G038300 chr2D 90.649 385 25 5 3218 3601 11459822 11460196 6.020000e-138 501.0
7 TraesCS2B01G038300 chr2D 86.634 404 12 11 3649 4037 11422873 11423249 3.760000e-110 409.0
8 TraesCS2B01G038300 chr2D 94.231 260 15 0 3341 3600 11431414 11431673 8.130000e-107 398.0
9 TraesCS2B01G038300 chr2D 84.595 383 29 9 3615 3978 11460655 11461026 1.780000e-93 353.0
10 TraesCS2B01G038300 chr2D 93.836 146 6 2 3202 3347 11422726 11422868 2.440000e-52 217.0
11 TraesCS2B01G038300 chr2A 93.633 2733 116 20 471 3162 12019732 12022447 0.000000e+00 4030.0
12 TraesCS2B01G038300 chr2A 80.465 1162 182 25 886 2009 12023096 12024250 0.000000e+00 846.0
13 TraesCS2B01G038300 chr2A 91.003 389 24 5 3218 3605 12034122 12034500 7.740000e-142 514.0
14 TraesCS2B01G038300 chr2A 90.979 388 22 5 3218 3605 12022649 12023023 1.000000e-140 510.0
15 TraesCS2B01G038300 chr2A 93.077 260 18 0 3341 3600 12025197 12025456 8.190000e-102 381.0
16 TraesCS2B01G038300 chr5D 90.078 514 46 4 2300 2810 526713694 526714205 0.000000e+00 662.0
17 TraesCS2B01G038300 chr5D 87.467 383 35 6 3218 3600 526714842 526715211 2.880000e-116 429.0
18 TraesCS2B01G038300 chr5D 85.841 339 34 4 2854 3192 526714216 526714540 8.300000e-92 348.0
19 TraesCS2B01G038300 chrUn 91.003 389 24 5 3218 3605 276511308 276511686 7.740000e-142 514.0
20 TraesCS2B01G038300 chrUn 75.221 226 40 9 3617 3830 353130515 353130294 4.300000e-15 93.5
21 TraesCS2B01G038300 chrUn 79.339 121 25 0 3710 3830 331371111 331371231 7.190000e-13 86.1
22 TraesCS2B01G038300 chr7D 88.974 390 28 7 3210 3597 430993286 430993662 6.110000e-128 468.0
23 TraesCS2B01G038300 chr7D 87.170 265 26 3 2851 3111 430992698 430992958 1.100000e-75 294.0
24 TraesCS2B01G038300 chr7D 89.055 201 22 0 2309 2509 430992397 430992597 2.410000e-62 250.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G038300 chr2B 17823475 17827511 4036 False 7456.000000 7456 100.000000 1 4037 1 chr2B.!!$F1 4036
1 TraesCS2B01G038300 chr2B 17834734 17836029 1295 False 277.666667 409 88.632333 1879 3599 3 chr2B.!!$F2 1720
2 TraesCS2B01G038300 chr2D 11419698 11423249 3551 False 1568.666667 4080 91.254333 381 4037 3 chr2D.!!$F1 3656
3 TraesCS2B01G038300 chr2D 11429620 11431673 2053 False 684.000000 970 88.117000 886 3600 2 chr2D.!!$F2 2714
4 TraesCS2B01G038300 chr2D 11459822 11461026 1204 False 427.000000 501 87.622000 3218 3978 2 chr2D.!!$F3 760
5 TraesCS2B01G038300 chr2A 12019732 12025456 5724 False 1441.750000 4030 89.538500 471 3605 4 chr2A.!!$F2 3134
6 TraesCS2B01G038300 chr5D 526713694 526715211 1517 False 479.666667 662 87.795333 2300 3600 3 chr5D.!!$F1 1300
7 TraesCS2B01G038300 chr7D 430992397 430993662 1265 False 337.333333 468 88.399667 2309 3597 3 chr7D.!!$F1 1288

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
243 244 0.035915 TTCCATTTCCCATCGCACGA 60.036 50.0 0.00 0.0 0.00 4.35 F
247 248 0.179073 ATTTCCCATCGCACGAGGAG 60.179 55.0 6.24 0.0 0.00 3.69 F
323 324 0.248012 TGGATGCGCCGACTTCTAAA 59.752 50.0 4.18 0.0 40.66 1.85 F
410 411 0.392461 TGCCGTGGCCAGAGATTTAC 60.392 55.0 5.11 0.0 41.09 2.01 F
413 414 0.463833 CGTGGCCAGAGATTTACCCC 60.464 60.0 5.11 0.0 0.00 4.95 F
2127 2212 0.661780 CCGACGGCGAGAAGATCATC 60.662 60.0 15.16 0.0 40.82 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1158 1220 0.321298 GCGTGTAGGTGGTGGTGATT 60.321 55.000 0.00 0.00 0.00 2.57 R
1365 1427 1.129998 CCGATGAGCTTCTTGTTGCAG 59.870 52.381 0.00 0.00 0.00 4.41 R
1842 1918 2.087009 GTTCAGGTTCTCGCCGTCG 61.087 63.158 0.00 0.00 0.00 5.12 R
2127 2212 2.423031 CGTGGAGTTGACGTACGCG 61.423 63.158 16.72 3.53 44.93 6.01 R
2568 2653 4.051167 TAGACGAGCCCCGGGTCA 62.051 66.667 21.85 0.00 43.93 4.02 R
3092 3400 0.108233 CTGACAGAGCTGCTTCTCCC 60.108 60.000 2.53 0.00 33.66 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 9.733556 TTAAGTTATATGTCCAAAGCTTCTTCA 57.266 29.630 0.00 0.00 0.00 3.02
41 42 7.617041 AGTTATATGTCCAAAGCTTCTTCAC 57.383 36.000 0.00 0.00 0.00 3.18
42 43 6.313905 AGTTATATGTCCAAAGCTTCTTCACG 59.686 38.462 0.00 0.00 0.00 4.35
43 44 0.944386 TGTCCAAAGCTTCTTCACGC 59.056 50.000 0.00 0.00 0.00 5.34
44 45 0.238553 GTCCAAAGCTTCTTCACGCC 59.761 55.000 0.00 0.00 0.00 5.68
45 46 0.108585 TCCAAAGCTTCTTCACGCCT 59.891 50.000 0.00 0.00 0.00 5.52
46 47 1.346395 TCCAAAGCTTCTTCACGCCTA 59.654 47.619 0.00 0.00 0.00 3.93
47 48 2.027192 TCCAAAGCTTCTTCACGCCTAT 60.027 45.455 0.00 0.00 0.00 2.57
48 49 2.749621 CCAAAGCTTCTTCACGCCTATT 59.250 45.455 0.00 0.00 0.00 1.73
49 50 3.191371 CCAAAGCTTCTTCACGCCTATTT 59.809 43.478 0.00 0.00 0.00 1.40
50 51 4.321230 CCAAAGCTTCTTCACGCCTATTTT 60.321 41.667 0.00 0.00 0.00 1.82
51 52 4.686839 AAGCTTCTTCACGCCTATTTTC 57.313 40.909 0.00 0.00 0.00 2.29
52 53 3.674997 AGCTTCTTCACGCCTATTTTCA 58.325 40.909 0.00 0.00 0.00 2.69
53 54 3.437049 AGCTTCTTCACGCCTATTTTCAC 59.563 43.478 0.00 0.00 0.00 3.18
54 55 3.437049 GCTTCTTCACGCCTATTTTCACT 59.563 43.478 0.00 0.00 0.00 3.41
55 56 4.630069 GCTTCTTCACGCCTATTTTCACTA 59.370 41.667 0.00 0.00 0.00 2.74
56 57 5.121768 GCTTCTTCACGCCTATTTTCACTAA 59.878 40.000 0.00 0.00 0.00 2.24
57 58 6.348213 GCTTCTTCACGCCTATTTTCACTAAA 60.348 38.462 0.00 0.00 0.00 1.85
58 59 7.499321 TTCTTCACGCCTATTTTCACTAAAA 57.501 32.000 0.00 0.00 38.87 1.52
59 60 7.129109 TCTTCACGCCTATTTTCACTAAAAG 57.871 36.000 0.00 0.00 37.97 2.27
60 61 5.291293 TCACGCCTATTTTCACTAAAAGC 57.709 39.130 0.00 0.00 37.97 3.51
61 62 4.155280 TCACGCCTATTTTCACTAAAAGCC 59.845 41.667 0.00 0.00 37.97 4.35
62 63 4.156008 CACGCCTATTTTCACTAAAAGCCT 59.844 41.667 0.00 0.00 37.97 4.58
63 64 4.156008 ACGCCTATTTTCACTAAAAGCCTG 59.844 41.667 0.00 0.00 37.97 4.85
64 65 4.156008 CGCCTATTTTCACTAAAAGCCTGT 59.844 41.667 0.00 0.00 37.97 4.00
65 66 5.335661 CGCCTATTTTCACTAAAAGCCTGTT 60.336 40.000 0.00 0.00 37.97 3.16
66 67 6.455647 GCCTATTTTCACTAAAAGCCTGTTT 58.544 36.000 0.00 0.00 37.97 2.83
67 68 6.929049 GCCTATTTTCACTAAAAGCCTGTTTT 59.071 34.615 0.00 0.00 37.97 2.43
68 69 7.116376 GCCTATTTTCACTAAAAGCCTGTTTTC 59.884 37.037 0.00 0.00 37.97 2.29
69 70 7.326063 CCTATTTTCACTAAAAGCCTGTTTTCG 59.674 37.037 0.00 0.00 37.97 3.46
70 71 5.821516 TTTCACTAAAAGCCTGTTTTCGA 57.178 34.783 0.00 0.00 0.00 3.71
71 72 4.806342 TCACTAAAAGCCTGTTTTCGAC 57.194 40.909 0.00 0.00 0.00 4.20
72 73 3.562557 TCACTAAAAGCCTGTTTTCGACC 59.437 43.478 0.00 0.00 0.00 4.79
73 74 3.314080 CACTAAAAGCCTGTTTTCGACCA 59.686 43.478 0.00 0.00 0.00 4.02
74 75 3.949113 ACTAAAAGCCTGTTTTCGACCAA 59.051 39.130 0.00 0.00 0.00 3.67
75 76 3.878160 AAAAGCCTGTTTTCGACCAAA 57.122 38.095 0.00 0.00 0.00 3.28
76 77 4.400529 AAAAGCCTGTTTTCGACCAAAT 57.599 36.364 0.00 0.00 0.00 2.32
77 78 5.523438 AAAAGCCTGTTTTCGACCAAATA 57.477 34.783 0.00 0.00 0.00 1.40
78 79 5.722021 AAAGCCTGTTTTCGACCAAATAT 57.278 34.783 0.00 0.00 0.00 1.28
79 80 6.827586 AAAGCCTGTTTTCGACCAAATATA 57.172 33.333 0.00 0.00 0.00 0.86
80 81 5.813080 AGCCTGTTTTCGACCAAATATAC 57.187 39.130 0.00 0.00 0.00 1.47
81 82 4.331717 AGCCTGTTTTCGACCAAATATACG 59.668 41.667 0.00 0.00 0.00 3.06
82 83 4.495184 GCCTGTTTTCGACCAAATATACGG 60.495 45.833 0.00 0.00 0.00 4.02
83 84 4.871557 CCTGTTTTCGACCAAATATACGGA 59.128 41.667 0.00 0.00 0.00 4.69
84 85 5.526111 CCTGTTTTCGACCAAATATACGGAT 59.474 40.000 0.00 0.00 0.00 4.18
85 86 6.702723 CCTGTTTTCGACCAAATATACGGATA 59.297 38.462 0.00 0.00 0.00 2.59
86 87 7.386848 CCTGTTTTCGACCAAATATACGGATAT 59.613 37.037 0.00 0.00 0.00 1.63
87 88 8.078959 TGTTTTCGACCAAATATACGGATATG 57.921 34.615 0.00 0.00 0.00 1.78
88 89 6.715344 TTTCGACCAAATATACGGATATGC 57.285 37.500 0.00 0.00 0.00 3.14
89 90 5.394224 TCGACCAAATATACGGATATGCA 57.606 39.130 0.00 0.00 0.00 3.96
90 91 5.972935 TCGACCAAATATACGGATATGCAT 58.027 37.500 3.79 3.79 0.00 3.96
91 92 5.810074 TCGACCAAATATACGGATATGCATG 59.190 40.000 10.16 1.52 0.00 4.06
92 93 5.502382 CGACCAAATATACGGATATGCATGC 60.502 44.000 11.82 11.82 0.00 4.06
93 94 5.252547 ACCAAATATACGGATATGCATGCA 58.747 37.500 25.04 25.04 0.00 3.96
94 95 5.887598 ACCAAATATACGGATATGCATGCAT 59.112 36.000 33.92 33.92 40.19 3.96
95 96 6.038603 ACCAAATATACGGATATGCATGCATC 59.961 38.462 35.35 23.21 37.82 3.91
96 97 6.261603 CCAAATATACGGATATGCATGCATCT 59.738 38.462 35.35 26.38 37.82 2.90
97 98 7.350467 CAAATATACGGATATGCATGCATCTC 58.650 38.462 35.35 31.61 37.82 2.75
98 99 2.845363 ACGGATATGCATGCATCTCA 57.155 45.000 33.89 21.92 37.82 3.27
99 100 3.130280 ACGGATATGCATGCATCTCAA 57.870 42.857 33.89 21.61 37.82 3.02
100 101 3.072211 ACGGATATGCATGCATCTCAAG 58.928 45.455 33.89 29.23 37.82 3.02
101 102 3.072211 CGGATATGCATGCATCTCAAGT 58.928 45.455 33.89 17.82 37.82 3.16
102 103 3.501062 CGGATATGCATGCATCTCAAGTT 59.499 43.478 33.89 17.18 37.82 2.66
103 104 4.692155 CGGATATGCATGCATCTCAAGTTA 59.308 41.667 33.89 19.43 37.82 2.24
104 105 5.163884 CGGATATGCATGCATCTCAAGTTAG 60.164 44.000 33.89 19.57 37.82 2.34
105 106 5.704515 GGATATGCATGCATCTCAAGTTAGT 59.295 40.000 33.89 15.48 37.82 2.24
106 107 4.895224 ATGCATGCATCTCAAGTTAGTG 57.105 40.909 27.46 0.00 29.42 2.74
107 108 3.678289 TGCATGCATCTCAAGTTAGTGT 58.322 40.909 18.46 0.00 0.00 3.55
108 109 4.074259 TGCATGCATCTCAAGTTAGTGTT 58.926 39.130 18.46 0.00 0.00 3.32
109 110 4.520111 TGCATGCATCTCAAGTTAGTGTTT 59.480 37.500 18.46 0.00 0.00 2.83
110 111 4.855388 GCATGCATCTCAAGTTAGTGTTTG 59.145 41.667 14.21 0.00 0.00 2.93
111 112 5.563475 GCATGCATCTCAAGTTAGTGTTTGT 60.563 40.000 14.21 0.00 0.00 2.83
112 113 5.673337 TGCATCTCAAGTTAGTGTTTGTC 57.327 39.130 0.00 0.00 0.00 3.18
113 114 5.122519 TGCATCTCAAGTTAGTGTTTGTCA 58.877 37.500 0.00 0.00 0.00 3.58
114 115 5.588246 TGCATCTCAAGTTAGTGTTTGTCAA 59.412 36.000 0.00 0.00 0.00 3.18
115 116 6.094742 TGCATCTCAAGTTAGTGTTTGTCAAA 59.905 34.615 0.00 0.00 0.00 2.69
116 117 6.972328 GCATCTCAAGTTAGTGTTTGTCAAAA 59.028 34.615 0.00 0.00 0.00 2.44
117 118 7.166473 GCATCTCAAGTTAGTGTTTGTCAAAAG 59.834 37.037 0.00 0.00 0.00 2.27
118 119 7.681939 TCTCAAGTTAGTGTTTGTCAAAAGT 57.318 32.000 0.00 0.00 0.00 2.66
119 120 8.106247 TCTCAAGTTAGTGTTTGTCAAAAGTT 57.894 30.769 0.00 0.00 0.00 2.66
120 121 8.234546 TCTCAAGTTAGTGTTTGTCAAAAGTTC 58.765 33.333 0.00 0.00 0.00 3.01
121 122 8.106247 TCAAGTTAGTGTTTGTCAAAAGTTCT 57.894 30.769 0.00 0.00 0.00 3.01
122 123 8.234546 TCAAGTTAGTGTTTGTCAAAAGTTCTC 58.765 33.333 0.00 0.00 0.00 2.87
123 124 7.681939 AGTTAGTGTTTGTCAAAAGTTCTCA 57.318 32.000 0.00 0.00 0.00 3.27
124 125 8.281212 AGTTAGTGTTTGTCAAAAGTTCTCAT 57.719 30.769 0.00 0.00 0.00 2.90
125 126 8.739972 AGTTAGTGTTTGTCAAAAGTTCTCATT 58.260 29.630 0.00 0.00 0.00 2.57
126 127 9.997482 GTTAGTGTTTGTCAAAAGTTCTCATTA 57.003 29.630 0.00 0.00 0.00 1.90
127 128 9.997482 TTAGTGTTTGTCAAAAGTTCTCATTAC 57.003 29.630 0.00 0.00 0.00 1.89
128 129 8.281212 AGTGTTTGTCAAAAGTTCTCATTACT 57.719 30.769 0.00 0.00 0.00 2.24
129 130 8.398665 AGTGTTTGTCAAAAGTTCTCATTACTC 58.601 33.333 0.00 0.00 0.00 2.59
130 131 7.644157 GTGTTTGTCAAAAGTTCTCATTACTCC 59.356 37.037 0.00 0.00 0.00 3.85
131 132 7.338196 TGTTTGTCAAAAGTTCTCATTACTCCA 59.662 33.333 0.00 0.00 0.00 3.86
132 133 7.873719 TTGTCAAAAGTTCTCATTACTCCAA 57.126 32.000 0.00 0.00 0.00 3.53
133 134 8.463930 TTGTCAAAAGTTCTCATTACTCCAAT 57.536 30.769 0.00 0.00 0.00 3.16
134 135 9.567776 TTGTCAAAAGTTCTCATTACTCCAATA 57.432 29.630 0.00 0.00 0.00 1.90
135 136 9.739276 TGTCAAAAGTTCTCATTACTCCAATAT 57.261 29.630 0.00 0.00 0.00 1.28
187 188 8.515473 GGAACGTGTAAGCAAGAAAAATATTT 57.485 30.769 0.00 0.00 0.00 1.40
188 189 8.635983 GGAACGTGTAAGCAAGAAAAATATTTC 58.364 33.333 0.10 0.00 44.34 2.17
206 207 9.971744 AAATATTTCTTGAAAATAATGCGCAAC 57.028 25.926 17.11 0.71 0.00 4.17
207 208 8.700722 ATATTTCTTGAAAATAATGCGCAACA 57.299 26.923 17.11 5.23 0.00 3.33
208 209 7.599630 ATTTCTTGAAAATAATGCGCAACAT 57.400 28.000 17.11 7.88 42.30 2.71
209 210 6.392353 TTCTTGAAAATAATGCGCAACATG 57.608 33.333 17.11 8.60 39.60 3.21
210 211 5.707931 TCTTGAAAATAATGCGCAACATGA 58.292 33.333 17.11 10.60 39.60 3.07
211 212 6.331845 TCTTGAAAATAATGCGCAACATGAT 58.668 32.000 17.11 0.00 39.60 2.45
212 213 5.952698 TGAAAATAATGCGCAACATGATG 57.047 34.783 17.11 0.00 39.60 3.07
213 214 4.804665 TGAAAATAATGCGCAACATGATGG 59.195 37.500 17.11 0.00 39.60 3.51
214 215 4.652421 AAATAATGCGCAACATGATGGA 57.348 36.364 17.11 0.00 39.60 3.41
215 216 4.652421 AATAATGCGCAACATGATGGAA 57.348 36.364 17.11 0.00 39.60 3.53
216 217 4.652421 ATAATGCGCAACATGATGGAAA 57.348 36.364 17.11 0.00 39.60 3.13
217 218 2.282701 ATGCGCAACATGATGGAAAC 57.717 45.000 17.11 0.00 37.70 2.78
218 219 1.545136 ATGCGCAACATGATGGAAACA 59.455 42.857 17.11 0.00 41.19 2.83
219 220 2.671914 ATGCGCAACATGATGGAAACAC 60.672 45.455 17.11 0.00 40.07 3.32
220 221 5.769762 ATGCGCAACATGATGGAAACACC 62.770 47.826 17.11 0.00 40.07 4.16
230 231 2.649531 TGGAAACACCGAGTTCCATT 57.350 45.000 1.01 0.00 40.26 3.16
231 232 2.938838 TGGAAACACCGAGTTCCATTT 58.061 42.857 1.01 0.00 40.26 2.32
232 233 2.882137 TGGAAACACCGAGTTCCATTTC 59.118 45.455 1.01 0.00 40.26 2.17
233 234 2.228103 GGAAACACCGAGTTCCATTTCC 59.772 50.000 0.00 0.00 40.26 3.13
234 235 1.905637 AACACCGAGTTCCATTTCCC 58.094 50.000 0.00 0.00 34.74 3.97
235 236 0.768622 ACACCGAGTTCCATTTCCCA 59.231 50.000 0.00 0.00 0.00 4.37
236 237 1.354368 ACACCGAGTTCCATTTCCCAT 59.646 47.619 0.00 0.00 0.00 4.00
237 238 2.017049 CACCGAGTTCCATTTCCCATC 58.983 52.381 0.00 0.00 0.00 3.51
238 239 1.299541 CCGAGTTCCATTTCCCATCG 58.700 55.000 0.00 0.00 0.00 3.84
239 240 0.657840 CGAGTTCCATTTCCCATCGC 59.342 55.000 0.00 0.00 0.00 4.58
240 241 1.750193 GAGTTCCATTTCCCATCGCA 58.250 50.000 0.00 0.00 0.00 5.10
241 242 1.401905 GAGTTCCATTTCCCATCGCAC 59.598 52.381 0.00 0.00 0.00 5.34
242 243 0.098728 GTTCCATTTCCCATCGCACG 59.901 55.000 0.00 0.00 0.00 5.34
243 244 0.035915 TTCCATTTCCCATCGCACGA 60.036 50.000 0.00 0.00 0.00 4.35
244 245 0.461870 TCCATTTCCCATCGCACGAG 60.462 55.000 0.00 0.00 0.00 4.18
245 246 1.439353 CCATTTCCCATCGCACGAGG 61.439 60.000 0.00 0.00 0.00 4.63
246 247 0.461870 CATTTCCCATCGCACGAGGA 60.462 55.000 6.24 1.50 0.00 3.71
247 248 0.179073 ATTTCCCATCGCACGAGGAG 60.179 55.000 6.24 0.00 0.00 3.69
248 249 1.254975 TTTCCCATCGCACGAGGAGA 61.255 55.000 6.24 0.00 0.00 3.71
249 250 1.254975 TTCCCATCGCACGAGGAGAA 61.255 55.000 6.24 1.64 0.00 2.87
250 251 1.218047 CCCATCGCACGAGGAGAAA 59.782 57.895 6.24 0.00 0.00 2.52
251 252 0.391130 CCCATCGCACGAGGAGAAAA 60.391 55.000 6.24 0.00 0.00 2.29
252 253 0.721718 CCATCGCACGAGGAGAAAAC 59.278 55.000 6.24 0.00 0.00 2.43
253 254 1.428448 CATCGCACGAGGAGAAAACA 58.572 50.000 0.00 0.00 0.00 2.83
254 255 1.391485 CATCGCACGAGGAGAAAACAG 59.609 52.381 0.00 0.00 0.00 3.16
255 256 0.671796 TCGCACGAGGAGAAAACAGA 59.328 50.000 0.00 0.00 0.00 3.41
256 257 0.784778 CGCACGAGGAGAAAACAGAC 59.215 55.000 0.00 0.00 0.00 3.51
257 258 0.784778 GCACGAGGAGAAAACAGACG 59.215 55.000 0.00 0.00 0.00 4.18
258 259 1.868519 GCACGAGGAGAAAACAGACGT 60.869 52.381 0.00 0.00 0.00 4.34
259 260 1.787155 CACGAGGAGAAAACAGACGTG 59.213 52.381 0.00 0.00 42.04 4.49
260 261 1.407979 ACGAGGAGAAAACAGACGTGT 59.592 47.619 0.00 0.00 39.19 4.49
261 262 1.787155 CGAGGAGAAAACAGACGTGTG 59.213 52.381 11.72 11.72 36.84 3.82
262 263 2.798499 CGAGGAGAAAACAGACGTGTGT 60.798 50.000 13.32 13.32 36.84 3.72
263 264 3.549423 CGAGGAGAAAACAGACGTGTGTA 60.549 47.826 19.62 0.00 36.84 2.90
264 265 4.365723 GAGGAGAAAACAGACGTGTGTAA 58.634 43.478 19.62 0.00 36.84 2.41
265 266 4.761975 AGGAGAAAACAGACGTGTGTAAA 58.238 39.130 19.62 0.00 36.84 2.01
266 267 5.365619 AGGAGAAAACAGACGTGTGTAAAT 58.634 37.500 19.62 8.15 36.84 1.40
267 268 5.820947 AGGAGAAAACAGACGTGTGTAAATT 59.179 36.000 19.62 13.99 36.84 1.82
268 269 6.018180 AGGAGAAAACAGACGTGTGTAAATTC 60.018 38.462 19.62 20.67 36.84 2.17
269 270 6.238266 GGAGAAAACAGACGTGTGTAAATTCA 60.238 38.462 26.20 0.00 36.84 2.57
270 271 7.079182 AGAAAACAGACGTGTGTAAATTCAA 57.921 32.000 26.20 0.00 36.84 2.69
271 272 7.531716 AGAAAACAGACGTGTGTAAATTCAAA 58.468 30.769 26.20 0.00 36.84 2.69
272 273 7.483691 AGAAAACAGACGTGTGTAAATTCAAAC 59.516 33.333 26.20 11.40 36.84 2.93
273 274 5.804692 ACAGACGTGTGTAAATTCAAACA 57.195 34.783 17.81 0.00 34.75 2.83
274 275 6.184580 ACAGACGTGTGTAAATTCAAACAA 57.815 33.333 17.81 0.00 34.75 2.83
275 276 6.613233 ACAGACGTGTGTAAATTCAAACAAA 58.387 32.000 17.81 0.00 34.75 2.83
276 277 7.254852 ACAGACGTGTGTAAATTCAAACAAAT 58.745 30.769 17.81 0.00 34.75 2.32
277 278 8.399425 ACAGACGTGTGTAAATTCAAACAAATA 58.601 29.630 17.81 0.00 34.75 1.40
278 279 8.678510 CAGACGTGTGTAAATTCAAACAAATAC 58.321 33.333 4.19 0.00 0.00 1.89
279 280 8.399425 AGACGTGTGTAAATTCAAACAAATACA 58.601 29.630 0.00 0.00 0.00 2.29
280 281 8.330302 ACGTGTGTAAATTCAAACAAATACAC 57.670 30.769 6.87 6.87 37.61 2.90
281 282 7.164498 ACGTGTGTAAATTCAAACAAATACACG 59.836 33.333 18.30 18.30 42.84 4.49
282 283 7.373703 CGTGTGTAAATTCAAACAAATACACGA 59.626 33.333 15.90 0.32 41.23 4.35
283 284 8.466026 GTGTGTAAATTCAAACAAATACACGAC 58.534 33.333 8.73 5.54 39.30 4.34
284 285 8.182227 TGTGTAAATTCAAACAAATACACGACA 58.818 29.630 8.73 0.00 39.30 4.35
285 286 9.176181 GTGTAAATTCAAACAAATACACGACAT 57.824 29.630 0.00 0.00 0.00 3.06
288 289 8.736751 AAATTCAAACAAATACACGACATACC 57.263 30.769 0.00 0.00 0.00 2.73
289 290 6.862711 TTCAAACAAATACACGACATACCA 57.137 33.333 0.00 0.00 0.00 3.25
290 291 6.230849 TCAAACAAATACACGACATACCAC 57.769 37.500 0.00 0.00 0.00 4.16
291 292 4.914312 AACAAATACACGACATACCACG 57.086 40.909 0.00 0.00 0.00 4.94
292 293 3.916761 ACAAATACACGACATACCACGT 58.083 40.909 0.00 0.00 43.50 4.49
296 297 2.263540 ACGACATACCACGTGGCC 59.736 61.111 34.26 16.46 41.17 5.36
297 298 2.263227 CGACATACCACGTGGCCA 59.737 61.111 34.26 22.51 39.32 5.36
298 299 1.809619 CGACATACCACGTGGCCAG 60.810 63.158 34.26 24.26 39.32 4.85
299 300 1.594833 GACATACCACGTGGCCAGA 59.405 57.895 34.26 17.39 39.32 3.86
300 301 0.460284 GACATACCACGTGGCCAGAG 60.460 60.000 34.26 20.76 39.32 3.35
301 302 1.815421 CATACCACGTGGCCAGAGC 60.815 63.158 34.26 0.00 39.32 4.09
302 303 2.290287 ATACCACGTGGCCAGAGCA 61.290 57.895 34.26 10.99 42.56 4.26
303 304 1.836999 ATACCACGTGGCCAGAGCAA 61.837 55.000 34.26 9.91 42.56 3.91
304 305 1.836999 TACCACGTGGCCAGAGCAAT 61.837 55.000 34.26 13.99 42.56 3.56
305 306 2.693762 CCACGTGGCCAGAGCAATG 61.694 63.158 24.02 0.00 42.56 2.82
306 307 2.360350 ACGTGGCCAGAGCAATGG 60.360 61.111 5.11 2.92 42.56 3.16
307 308 2.046023 CGTGGCCAGAGCAATGGA 60.046 61.111 5.11 0.00 43.57 3.41
308 309 1.452651 CGTGGCCAGAGCAATGGAT 60.453 57.895 5.11 0.00 43.57 3.41
309 310 1.721664 CGTGGCCAGAGCAATGGATG 61.722 60.000 5.11 0.00 43.57 3.51
317 318 3.204827 GCAATGGATGCGCCGACT 61.205 61.111 4.18 0.00 46.87 4.18
318 319 2.764314 GCAATGGATGCGCCGACTT 61.764 57.895 4.18 0.00 46.87 3.01
319 320 1.353103 CAATGGATGCGCCGACTTC 59.647 57.895 4.18 0.00 40.66 3.01
320 321 1.091771 CAATGGATGCGCCGACTTCT 61.092 55.000 4.18 0.00 40.66 2.85
321 322 0.464036 AATGGATGCGCCGACTTCTA 59.536 50.000 4.18 0.00 40.66 2.10
322 323 0.464036 ATGGATGCGCCGACTTCTAA 59.536 50.000 4.18 0.00 40.66 2.10
323 324 0.248012 TGGATGCGCCGACTTCTAAA 59.752 50.000 4.18 0.00 40.66 1.85
324 325 1.338294 TGGATGCGCCGACTTCTAAAA 60.338 47.619 4.18 0.00 40.66 1.52
325 326 1.940613 GGATGCGCCGACTTCTAAAAT 59.059 47.619 4.18 0.00 0.00 1.82
326 327 3.128349 GGATGCGCCGACTTCTAAAATA 58.872 45.455 4.18 0.00 0.00 1.40
327 328 3.558418 GGATGCGCCGACTTCTAAAATAA 59.442 43.478 4.18 0.00 0.00 1.40
328 329 4.034742 GGATGCGCCGACTTCTAAAATAAA 59.965 41.667 4.18 0.00 0.00 1.40
329 330 5.448089 GGATGCGCCGACTTCTAAAATAAAA 60.448 40.000 4.18 0.00 0.00 1.52
330 331 5.359716 TGCGCCGACTTCTAAAATAAAAA 57.640 34.783 4.18 0.00 0.00 1.94
377 378 8.642908 TCATATAACAGTATAGTTGTGTGTGC 57.357 34.615 0.00 0.00 34.78 4.57
378 379 8.254508 TCATATAACAGTATAGTTGTGTGTGCA 58.745 33.333 0.00 0.00 34.78 4.57
379 380 8.878769 CATATAACAGTATAGTTGTGTGTGCAA 58.121 33.333 0.00 0.00 30.81 4.08
401 402 0.683973 AAAAATCAATGCCGTGGCCA 59.316 45.000 0.00 0.00 41.09 5.36
409 410 0.546122 ATGCCGTGGCCAGAGATTTA 59.454 50.000 5.11 0.00 41.09 1.40
410 411 0.392461 TGCCGTGGCCAGAGATTTAC 60.392 55.000 5.11 0.00 41.09 2.01
413 414 0.463833 CGTGGCCAGAGATTTACCCC 60.464 60.000 5.11 0.00 0.00 4.95
420 421 3.622953 GCCAGAGATTTACCCCGGTTTTA 60.623 47.826 0.00 0.00 0.00 1.52
421 422 4.788679 CCAGAGATTTACCCCGGTTTTAT 58.211 43.478 0.00 0.00 0.00 1.40
422 423 5.198207 CCAGAGATTTACCCCGGTTTTATT 58.802 41.667 0.00 0.00 0.00 1.40
423 424 5.655090 CCAGAGATTTACCCCGGTTTTATTT 59.345 40.000 0.00 0.00 0.00 1.40
424 425 6.153851 CCAGAGATTTACCCCGGTTTTATTTT 59.846 38.462 0.00 0.00 0.00 1.82
425 426 7.255569 CAGAGATTTACCCCGGTTTTATTTTC 58.744 38.462 0.00 0.00 0.00 2.29
426 427 7.122204 CAGAGATTTACCCCGGTTTTATTTTCT 59.878 37.037 0.00 0.00 0.00 2.52
427 428 7.338703 AGAGATTTACCCCGGTTTTATTTTCTC 59.661 37.037 0.00 2.76 0.00 2.87
436 437 7.254624 CCCCGGTTTTATTTTCTCAAACAAAAG 60.255 37.037 0.00 0.00 32.92 2.27
452 453 3.324556 ACAAAAGTTCATGTCCCCATTGG 59.675 43.478 0.00 0.00 0.00 3.16
453 454 3.541242 AAAGTTCATGTCCCCATTGGA 57.459 42.857 3.62 0.00 42.41 3.53
499 507 3.057526 GTGATTCCACAAGTTAAGCCCAC 60.058 47.826 0.00 0.00 42.72 4.61
518 526 3.508840 CCGGGCCGAATTCAGCAC 61.509 66.667 30.79 10.87 0.00 4.40
521 529 3.508840 GGCCGAATTCAGCACCCG 61.509 66.667 15.31 0.00 0.00 5.28
578 586 1.670811 CCGTCGAGCTGCCAAATTTAT 59.329 47.619 0.00 0.00 0.00 1.40
579 587 2.286418 CCGTCGAGCTGCCAAATTTATC 60.286 50.000 0.00 0.00 0.00 1.75
580 588 2.609459 CGTCGAGCTGCCAAATTTATCT 59.391 45.455 0.00 0.00 0.00 1.98
581 589 3.802139 CGTCGAGCTGCCAAATTTATCTA 59.198 43.478 0.00 0.00 0.00 1.98
597 605 1.112113 TCTATCCCACGTTCCAGCTC 58.888 55.000 0.00 0.00 0.00 4.09
598 606 1.115467 CTATCCCACGTTCCAGCTCT 58.885 55.000 0.00 0.00 0.00 4.09
599 607 1.067821 CTATCCCACGTTCCAGCTCTC 59.932 57.143 0.00 0.00 0.00 3.20
601 609 2.286523 CCCACGTTCCAGCTCTCCT 61.287 63.158 0.00 0.00 0.00 3.69
748 771 4.825679 CCCCACCCCTCCTCCTCC 62.826 77.778 0.00 0.00 0.00 4.30
749 772 3.700350 CCCACCCCTCCTCCTCCT 61.700 72.222 0.00 0.00 0.00 3.69
750 773 2.041405 CCACCCCTCCTCCTCCTC 60.041 72.222 0.00 0.00 0.00 3.71
775 798 4.441695 TCCTCTTGCTGCTCGCCG 62.442 66.667 0.00 0.00 38.05 6.46
1272 1334 4.078516 GGGGTCCTCGACAACGGG 62.079 72.222 0.00 0.00 40.02 5.28
1305 1367 4.863984 GTCTCGTTCCTGGACGAC 57.136 61.111 14.47 7.70 46.09 4.34
1389 1451 2.512515 AAGAAGCTCATCGGCGGC 60.513 61.111 7.21 1.60 37.29 6.53
1578 1648 3.605895 GAGGTCCTCTCCGTCACC 58.394 66.667 12.02 0.00 36.52 4.02
1692 1768 2.997897 AGCTTCTCCGCCGTCCTT 60.998 61.111 0.00 0.00 0.00 3.36
1842 1918 2.750237 GGCAACGGGGTGGTGATC 60.750 66.667 0.00 0.00 0.00 2.92
1871 1947 2.163601 AACCTGAACCCGTACGAGCC 62.164 60.000 18.76 0.00 0.00 4.70
2127 2212 0.661780 CCGACGGCGAGAAGATCATC 60.662 60.000 15.16 0.00 40.82 2.92
2625 2710 3.467226 ATCCCCTACGTGTGCGGG 61.467 66.667 0.00 2.48 43.45 6.13
2802 2889 1.376812 GGTGACCAACATCGGGGAC 60.377 63.158 0.00 0.00 0.00 4.46
3021 3315 1.941734 GATCGCCGTGCTCTTCGAG 60.942 63.158 5.70 0.00 34.30 4.04
3050 3358 2.416431 CCAACTAACGAACCGACTAGGG 60.416 54.545 0.00 0.00 46.96 3.53
3077 3385 1.659794 GCCGAGCTCTCTCCTGATC 59.340 63.158 12.85 0.00 35.94 2.92
3123 3431 4.615588 GCTCTGTCAGATAGGGCTTAAT 57.384 45.455 11.74 0.00 38.62 1.40
3124 3432 4.967036 GCTCTGTCAGATAGGGCTTAATT 58.033 43.478 11.74 0.00 38.62 1.40
3125 3433 4.754114 GCTCTGTCAGATAGGGCTTAATTG 59.246 45.833 11.74 0.00 38.62 2.32
3162 3497 5.558818 AGATGACTGAAGATTGAACAGCTT 58.441 37.500 0.00 0.00 35.38 3.74
3163 3498 5.411977 AGATGACTGAAGATTGAACAGCTTG 59.588 40.000 0.00 0.00 35.38 4.01
3164 3499 3.817084 TGACTGAAGATTGAACAGCTTGG 59.183 43.478 0.00 0.00 35.38 3.61
3165 3500 2.555757 ACTGAAGATTGAACAGCTTGGC 59.444 45.455 0.00 0.00 35.38 4.52
3166 3501 2.555325 CTGAAGATTGAACAGCTTGGCA 59.445 45.455 0.00 0.00 0.00 4.92
3167 3502 2.957680 TGAAGATTGAACAGCTTGGCAA 59.042 40.909 0.00 0.00 0.00 4.52
3168 3503 3.243501 TGAAGATTGAACAGCTTGGCAAC 60.244 43.478 0.00 0.00 0.00 4.17
3169 3504 1.615392 AGATTGAACAGCTTGGCAACC 59.385 47.619 0.00 0.00 0.00 3.77
3176 3511 0.323725 CAGCTTGGCAACCCCTATGT 60.324 55.000 0.00 0.00 0.00 2.29
3192 3527 4.576463 CCCTATGTTGCTCAATACCTCAAC 59.424 45.833 0.00 0.00 39.23 3.18
3193 3528 5.431765 CCTATGTTGCTCAATACCTCAACT 58.568 41.667 0.00 0.00 39.44 3.16
3194 3529 5.295292 CCTATGTTGCTCAATACCTCAACTG 59.705 44.000 0.00 0.00 39.44 3.16
3195 3530 2.813754 TGTTGCTCAATACCTCAACTGC 59.186 45.455 0.00 0.00 39.44 4.40
3196 3531 3.077359 GTTGCTCAATACCTCAACTGCT 58.923 45.455 0.00 0.00 36.72 4.24
3197 3532 2.977914 TGCTCAATACCTCAACTGCTC 58.022 47.619 0.00 0.00 0.00 4.26
3198 3533 2.302733 TGCTCAATACCTCAACTGCTCA 59.697 45.455 0.00 0.00 0.00 4.26
3200 3535 3.373439 GCTCAATACCTCAACTGCTCAAG 59.627 47.826 0.00 0.00 0.00 3.02
3215 3857 6.595682 ACTGCTCAAGCCAAATGTATATACT 58.404 36.000 13.89 0.00 41.18 2.12
3216 3858 6.484643 ACTGCTCAAGCCAAATGTATATACTG 59.515 38.462 13.89 4.31 41.18 2.74
3257 3903 6.892658 TGTACTGCCATTTTACTGTCATTT 57.107 33.333 0.00 0.00 0.00 2.32
3297 3955 3.624861 GCTCAAGTATCCATGTTCCACAG 59.375 47.826 0.00 0.00 0.00 3.66
3298 3956 4.194640 CTCAAGTATCCATGTTCCACAGG 58.805 47.826 0.00 0.00 0.00 4.00
3299 3957 3.587061 TCAAGTATCCATGTTCCACAGGT 59.413 43.478 0.00 0.00 0.00 4.00
3302 3960 4.101114 AGTATCCATGTTCCACAGGTACA 58.899 43.478 0.00 0.00 37.39 2.90
3303 3961 4.721776 AGTATCCATGTTCCACAGGTACAT 59.278 41.667 2.88 2.88 42.88 2.29
3398 6494 5.401972 CAGAGATAGCAGTTTTCGCATCTAG 59.598 44.000 0.00 0.00 31.69 2.43
3402 6498 1.737838 CAGTTTTCGCATCTAGCCCA 58.262 50.000 0.00 0.00 41.38 5.36
3405 6501 2.945668 AGTTTTCGCATCTAGCCCAATC 59.054 45.455 0.00 0.00 41.38 2.67
3528 6625 0.676466 CAGGGTGGAAATGCGTGCTA 60.676 55.000 0.00 0.00 0.00 3.49
3605 6702 3.766691 GCTCCTGAACCCGCCGTA 61.767 66.667 0.00 0.00 0.00 4.02
3607 6704 2.036098 TCCTGAACCCGCCGTAGA 59.964 61.111 0.00 0.00 0.00 2.59
3608 6705 2.005960 CTCCTGAACCCGCCGTAGAG 62.006 65.000 0.00 0.00 0.00 2.43
3647 7189 8.659925 TTTTAGAACAGGTGATTTACGTAACA 57.340 30.769 7.70 0.61 0.00 2.41
3652 7194 7.660208 AGAACAGGTGATTTACGTAACATTTCT 59.340 33.333 7.70 7.93 0.00 2.52
3672 7214 9.991388 CATTTCTTGAATGTTCACAACAAAATT 57.009 25.926 0.00 0.00 45.86 1.82
3827 7384 2.765122 AGTGCAGAGAAAGAGAGCAAC 58.235 47.619 0.00 0.00 36.91 4.17
3830 7387 2.366590 TGCAGAGAAAGAGAGCAACTGA 59.633 45.455 0.00 0.00 31.42 3.41
3831 7388 2.736192 GCAGAGAAAGAGAGCAACTGAC 59.264 50.000 0.00 0.00 0.00 3.51
3832 7389 3.801638 GCAGAGAAAGAGAGCAACTGACA 60.802 47.826 0.00 0.00 0.00 3.58
3833 7390 4.567971 CAGAGAAAGAGAGCAACTGACAT 58.432 43.478 0.00 0.00 0.00 3.06
3879 7441 6.822667 AACATTTGCACATAGTCTCATCAA 57.177 33.333 0.00 0.00 0.00 2.57
3887 7449 6.656270 TGCACATAGTCTCATCAAGAAAACAT 59.344 34.615 0.00 0.00 35.21 2.71
3940 7502 6.927416 TCGGTAAAGCTCATCAACTTACTAA 58.073 36.000 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 9.733556 TGAAGAAGCTTTGGACATATAACTTAA 57.266 29.630 0.00 0.00 0.00 1.85
15 16 9.162764 GTGAAGAAGCTTTGGACATATAACTTA 57.837 33.333 0.00 0.00 0.00 2.24
16 17 7.148407 CGTGAAGAAGCTTTGGACATATAACTT 60.148 37.037 0.00 0.00 0.00 2.66
17 18 6.313905 CGTGAAGAAGCTTTGGACATATAACT 59.686 38.462 0.00 0.00 0.00 2.24
18 19 6.478588 CGTGAAGAAGCTTTGGACATATAAC 58.521 40.000 0.00 0.00 0.00 1.89
19 20 5.064707 GCGTGAAGAAGCTTTGGACATATAA 59.935 40.000 0.00 0.00 0.00 0.98
20 21 4.570772 GCGTGAAGAAGCTTTGGACATATA 59.429 41.667 0.00 0.00 0.00 0.86
21 22 3.375299 GCGTGAAGAAGCTTTGGACATAT 59.625 43.478 0.00 0.00 0.00 1.78
22 23 2.742053 GCGTGAAGAAGCTTTGGACATA 59.258 45.455 0.00 0.00 0.00 2.29
23 24 1.537202 GCGTGAAGAAGCTTTGGACAT 59.463 47.619 0.00 0.00 0.00 3.06
24 25 0.944386 GCGTGAAGAAGCTTTGGACA 59.056 50.000 0.00 0.00 0.00 4.02
25 26 0.238553 GGCGTGAAGAAGCTTTGGAC 59.761 55.000 0.00 0.00 0.00 4.02
26 27 0.108585 AGGCGTGAAGAAGCTTTGGA 59.891 50.000 0.00 0.00 0.00 3.53
27 28 1.808411 TAGGCGTGAAGAAGCTTTGG 58.192 50.000 0.00 0.00 0.00 3.28
28 29 4.425577 AAATAGGCGTGAAGAAGCTTTG 57.574 40.909 0.00 0.00 0.00 2.77
29 30 4.518970 TGAAAATAGGCGTGAAGAAGCTTT 59.481 37.500 0.00 0.00 0.00 3.51
30 31 4.072131 TGAAAATAGGCGTGAAGAAGCTT 58.928 39.130 0.00 0.00 0.00 3.74
31 32 3.437049 GTGAAAATAGGCGTGAAGAAGCT 59.563 43.478 0.00 0.00 0.00 3.74
32 33 3.437049 AGTGAAAATAGGCGTGAAGAAGC 59.563 43.478 0.00 0.00 0.00 3.86
33 34 6.721571 TTAGTGAAAATAGGCGTGAAGAAG 57.278 37.500 0.00 0.00 0.00 2.85
34 35 7.499321 TTTTAGTGAAAATAGGCGTGAAGAA 57.501 32.000 0.00 0.00 29.38 2.52
35 36 6.348213 GCTTTTAGTGAAAATAGGCGTGAAGA 60.348 38.462 0.00 0.00 34.08 2.87
36 37 5.795441 GCTTTTAGTGAAAATAGGCGTGAAG 59.205 40.000 0.00 0.00 34.08 3.02
37 38 5.335348 GGCTTTTAGTGAAAATAGGCGTGAA 60.335 40.000 0.00 0.00 34.08 3.18
38 39 4.155280 GGCTTTTAGTGAAAATAGGCGTGA 59.845 41.667 0.00 0.00 34.08 4.35
39 40 4.156008 AGGCTTTTAGTGAAAATAGGCGTG 59.844 41.667 0.00 0.00 36.64 5.34
40 41 4.156008 CAGGCTTTTAGTGAAAATAGGCGT 59.844 41.667 0.00 0.00 36.64 5.68
41 42 4.156008 ACAGGCTTTTAGTGAAAATAGGCG 59.844 41.667 0.00 0.00 36.64 5.52
42 43 5.644977 ACAGGCTTTTAGTGAAAATAGGC 57.355 39.130 0.00 0.00 34.08 3.93
43 44 7.326063 CGAAAACAGGCTTTTAGTGAAAATAGG 59.674 37.037 0.00 0.00 34.08 2.57
44 45 8.073768 TCGAAAACAGGCTTTTAGTGAAAATAG 58.926 33.333 0.00 0.00 34.08 1.73
45 46 7.858879 GTCGAAAACAGGCTTTTAGTGAAAATA 59.141 33.333 0.00 0.00 34.08 1.40
46 47 6.695713 GTCGAAAACAGGCTTTTAGTGAAAAT 59.304 34.615 0.00 0.00 34.08 1.82
47 48 6.031471 GTCGAAAACAGGCTTTTAGTGAAAA 58.969 36.000 0.00 0.00 33.48 2.29
48 49 5.449451 GGTCGAAAACAGGCTTTTAGTGAAA 60.449 40.000 0.00 0.00 0.00 2.69
49 50 4.035909 GGTCGAAAACAGGCTTTTAGTGAA 59.964 41.667 0.00 0.00 0.00 3.18
50 51 3.562557 GGTCGAAAACAGGCTTTTAGTGA 59.437 43.478 0.00 0.00 0.00 3.41
51 52 3.314080 TGGTCGAAAACAGGCTTTTAGTG 59.686 43.478 0.00 0.00 0.00 2.74
52 53 3.547746 TGGTCGAAAACAGGCTTTTAGT 58.452 40.909 0.00 0.00 0.00 2.24
53 54 4.561735 TTGGTCGAAAACAGGCTTTTAG 57.438 40.909 0.00 0.00 0.00 1.85
54 55 4.985538 TTTGGTCGAAAACAGGCTTTTA 57.014 36.364 0.00 0.00 0.00 1.52
55 56 3.878160 TTTGGTCGAAAACAGGCTTTT 57.122 38.095 0.00 0.00 0.00 2.27
56 57 5.722021 ATATTTGGTCGAAAACAGGCTTT 57.278 34.783 0.00 0.00 0.00 3.51
57 58 5.163794 CGTATATTTGGTCGAAAACAGGCTT 60.164 40.000 0.00 0.00 0.00 4.35
58 59 4.331717 CGTATATTTGGTCGAAAACAGGCT 59.668 41.667 0.00 0.00 0.00 4.58
59 60 4.495184 CCGTATATTTGGTCGAAAACAGGC 60.495 45.833 0.00 0.00 0.00 4.85
60 61 4.871557 TCCGTATATTTGGTCGAAAACAGG 59.128 41.667 0.00 0.00 0.00 4.00
61 62 6.598753 ATCCGTATATTTGGTCGAAAACAG 57.401 37.500 0.00 0.00 0.00 3.16
62 63 7.307514 GCATATCCGTATATTTGGTCGAAAACA 60.308 37.037 0.00 0.00 0.00 2.83
63 64 7.013529 GCATATCCGTATATTTGGTCGAAAAC 58.986 38.462 0.00 0.00 0.00 2.43
64 65 6.706716 TGCATATCCGTATATTTGGTCGAAAA 59.293 34.615 0.00 0.00 0.00 2.29
65 66 6.224584 TGCATATCCGTATATTTGGTCGAAA 58.775 36.000 0.00 0.00 0.00 3.46
66 67 5.785243 TGCATATCCGTATATTTGGTCGAA 58.215 37.500 0.00 0.00 0.00 3.71
67 68 5.394224 TGCATATCCGTATATTTGGTCGA 57.606 39.130 0.00 0.00 0.00 4.20
68 69 5.502382 GCATGCATATCCGTATATTTGGTCG 60.502 44.000 14.21 0.00 0.00 4.79
69 70 5.353956 TGCATGCATATCCGTATATTTGGTC 59.646 40.000 18.46 0.00 0.00 4.02
70 71 5.252547 TGCATGCATATCCGTATATTTGGT 58.747 37.500 18.46 0.00 0.00 3.67
71 72 5.816449 TGCATGCATATCCGTATATTTGG 57.184 39.130 18.46 0.00 0.00 3.28
72 73 7.011669 TGAGATGCATGCATATCCGTATATTTG 59.988 37.037 38.58 0.00 42.17 2.32
73 74 7.049754 TGAGATGCATGCATATCCGTATATTT 58.950 34.615 38.58 15.76 42.17 1.40
74 75 6.585416 TGAGATGCATGCATATCCGTATATT 58.415 36.000 38.58 15.95 42.17 1.28
75 76 6.165700 TGAGATGCATGCATATCCGTATAT 57.834 37.500 38.58 16.44 42.17 0.86
76 77 5.596836 TGAGATGCATGCATATCCGTATA 57.403 39.130 38.58 24.37 42.17 1.47
77 78 4.476628 TGAGATGCATGCATATCCGTAT 57.523 40.909 38.58 17.84 42.17 3.06
78 79 3.959535 TGAGATGCATGCATATCCGTA 57.040 42.857 38.58 24.98 42.17 4.02
79 80 2.845363 TGAGATGCATGCATATCCGT 57.155 45.000 38.58 19.24 42.17 4.69
80 81 3.072211 ACTTGAGATGCATGCATATCCG 58.928 45.455 38.58 32.21 42.17 4.18
81 82 5.704515 ACTAACTTGAGATGCATGCATATCC 59.295 40.000 38.58 27.02 42.17 2.59
82 83 6.204301 ACACTAACTTGAGATGCATGCATATC 59.796 38.462 36.79 36.79 42.89 1.63
83 84 6.060136 ACACTAACTTGAGATGCATGCATAT 58.940 36.000 32.27 29.62 36.70 1.78
84 85 5.430886 ACACTAACTTGAGATGCATGCATA 58.569 37.500 32.27 15.33 36.70 3.14
85 86 4.267536 ACACTAACTTGAGATGCATGCAT 58.732 39.130 32.66 32.66 39.69 3.96
86 87 3.678289 ACACTAACTTGAGATGCATGCA 58.322 40.909 25.04 25.04 0.00 3.96
87 88 4.691860 AACACTAACTTGAGATGCATGC 57.308 40.909 11.82 11.82 0.00 4.06
88 89 6.005583 ACAAACACTAACTTGAGATGCATG 57.994 37.500 2.46 0.00 0.00 4.06
89 90 5.764686 TGACAAACACTAACTTGAGATGCAT 59.235 36.000 0.00 0.00 0.00 3.96
90 91 5.122519 TGACAAACACTAACTTGAGATGCA 58.877 37.500 0.00 0.00 0.00 3.96
91 92 5.673337 TGACAAACACTAACTTGAGATGC 57.327 39.130 0.00 0.00 0.00 3.91
92 93 8.184192 ACTTTTGACAAACACTAACTTGAGATG 58.816 33.333 0.00 0.00 0.00 2.90
93 94 8.281212 ACTTTTGACAAACACTAACTTGAGAT 57.719 30.769 0.00 0.00 0.00 2.75
94 95 7.681939 ACTTTTGACAAACACTAACTTGAGA 57.318 32.000 0.00 0.00 0.00 3.27
95 96 8.237267 AGAACTTTTGACAAACACTAACTTGAG 58.763 33.333 0.00 0.00 0.00 3.02
96 97 8.106247 AGAACTTTTGACAAACACTAACTTGA 57.894 30.769 0.00 0.00 0.00 3.02
97 98 8.020819 TGAGAACTTTTGACAAACACTAACTTG 58.979 33.333 0.00 0.00 0.00 3.16
98 99 8.106247 TGAGAACTTTTGACAAACACTAACTT 57.894 30.769 0.00 0.00 0.00 2.66
99 100 7.681939 TGAGAACTTTTGACAAACACTAACT 57.318 32.000 0.00 0.00 0.00 2.24
100 101 8.911247 AATGAGAACTTTTGACAAACACTAAC 57.089 30.769 0.00 0.00 0.00 2.34
101 102 9.997482 GTAATGAGAACTTTTGACAAACACTAA 57.003 29.630 0.00 0.00 0.00 2.24
102 103 9.391006 AGTAATGAGAACTTTTGACAAACACTA 57.609 29.630 0.00 0.00 0.00 2.74
103 104 8.281212 AGTAATGAGAACTTTTGACAAACACT 57.719 30.769 0.00 0.00 0.00 3.55
104 105 7.644157 GGAGTAATGAGAACTTTTGACAAACAC 59.356 37.037 0.00 0.00 0.00 3.32
105 106 7.338196 TGGAGTAATGAGAACTTTTGACAAACA 59.662 33.333 0.00 0.00 0.00 2.83
106 107 7.703328 TGGAGTAATGAGAACTTTTGACAAAC 58.297 34.615 0.00 0.00 0.00 2.93
107 108 7.873719 TGGAGTAATGAGAACTTTTGACAAA 57.126 32.000 0.00 0.00 0.00 2.83
108 109 7.873719 TTGGAGTAATGAGAACTTTTGACAA 57.126 32.000 0.00 0.00 0.00 3.18
109 110 9.739276 ATATTGGAGTAATGAGAACTTTTGACA 57.261 29.630 0.00 0.00 0.00 3.58
142 143 9.537192 ACGTTCCGAAAATATGACTTATAATCA 57.463 29.630 0.00 0.00 0.00 2.57
143 144 9.793245 CACGTTCCGAAAATATGACTTATAATC 57.207 33.333 0.00 0.00 0.00 1.75
144 145 9.321562 ACACGTTCCGAAAATATGACTTATAAT 57.678 29.630 0.00 0.00 0.00 1.28
145 146 8.706492 ACACGTTCCGAAAATATGACTTATAA 57.294 30.769 0.00 0.00 0.00 0.98
146 147 9.800433 TTACACGTTCCGAAAATATGACTTATA 57.200 29.630 0.00 0.00 0.00 0.98
147 148 8.706492 TTACACGTTCCGAAAATATGACTTAT 57.294 30.769 0.00 0.00 0.00 1.73
148 149 7.201461 GCTTACACGTTCCGAAAATATGACTTA 60.201 37.037 0.00 0.00 0.00 2.24
149 150 6.401796 GCTTACACGTTCCGAAAATATGACTT 60.402 38.462 0.00 0.00 0.00 3.01
150 151 5.063060 GCTTACACGTTCCGAAAATATGACT 59.937 40.000 0.00 0.00 0.00 3.41
151 152 5.163933 TGCTTACACGTTCCGAAAATATGAC 60.164 40.000 0.00 0.00 0.00 3.06
152 153 4.930405 TGCTTACACGTTCCGAAAATATGA 59.070 37.500 0.00 0.00 0.00 2.15
153 154 5.211266 TGCTTACACGTTCCGAAAATATG 57.789 39.130 0.00 0.00 0.00 1.78
154 155 5.640357 TCTTGCTTACACGTTCCGAAAATAT 59.360 36.000 0.00 0.00 0.00 1.28
155 156 4.989797 TCTTGCTTACACGTTCCGAAAATA 59.010 37.500 0.00 0.00 0.00 1.40
156 157 3.810941 TCTTGCTTACACGTTCCGAAAAT 59.189 39.130 0.00 0.00 0.00 1.82
157 158 3.196463 TCTTGCTTACACGTTCCGAAAA 58.804 40.909 0.00 0.00 0.00 2.29
158 159 2.823984 TCTTGCTTACACGTTCCGAAA 58.176 42.857 0.00 0.00 0.00 3.46
159 160 2.512485 TCTTGCTTACACGTTCCGAA 57.488 45.000 0.00 0.00 0.00 4.30
160 161 2.512485 TTCTTGCTTACACGTTCCGA 57.488 45.000 0.00 0.00 0.00 4.55
161 162 3.595709 TTTTCTTGCTTACACGTTCCG 57.404 42.857 0.00 0.00 0.00 4.30
162 163 8.515473 AAATATTTTTCTTGCTTACACGTTCC 57.485 30.769 0.00 0.00 0.00 3.62
180 181 9.971744 GTTGCGCATTATTTTCAAGAAATATTT 57.028 25.926 12.75 0.00 0.00 1.40
181 182 9.149225 TGTTGCGCATTATTTTCAAGAAATATT 57.851 25.926 12.75 0.00 0.00 1.28
182 183 8.700722 TGTTGCGCATTATTTTCAAGAAATAT 57.299 26.923 12.75 0.00 0.00 1.28
183 184 8.593842 CATGTTGCGCATTATTTTCAAGAAATA 58.406 29.630 12.75 0.00 35.19 1.40
184 185 7.331440 TCATGTTGCGCATTATTTTCAAGAAAT 59.669 29.630 12.75 0.00 35.19 2.17
185 186 6.644181 TCATGTTGCGCATTATTTTCAAGAAA 59.356 30.769 12.75 0.00 35.19 2.52
186 187 6.155136 TCATGTTGCGCATTATTTTCAAGAA 58.845 32.000 12.75 0.00 35.19 2.52
187 188 5.707931 TCATGTTGCGCATTATTTTCAAGA 58.292 33.333 12.75 2.47 35.19 3.02
188 189 6.407623 CATCATGTTGCGCATTATTTTCAAG 58.592 36.000 12.75 0.09 35.19 3.02
189 190 5.291371 CCATCATGTTGCGCATTATTTTCAA 59.709 36.000 12.75 0.00 35.19 2.69
190 191 4.804665 CCATCATGTTGCGCATTATTTTCA 59.195 37.500 12.75 2.80 35.19 2.69
191 192 5.042593 TCCATCATGTTGCGCATTATTTTC 58.957 37.500 12.75 0.00 35.19 2.29
192 193 5.008619 TCCATCATGTTGCGCATTATTTT 57.991 34.783 12.75 0.00 35.19 1.82
193 194 4.652421 TCCATCATGTTGCGCATTATTT 57.348 36.364 12.75 0.00 35.19 1.40
194 195 4.652421 TTCCATCATGTTGCGCATTATT 57.348 36.364 12.75 0.00 35.19 1.40
195 196 4.142204 TGTTTCCATCATGTTGCGCATTAT 60.142 37.500 12.75 5.92 35.19 1.28
196 197 3.192212 TGTTTCCATCATGTTGCGCATTA 59.808 39.130 12.75 3.16 35.19 1.90
197 198 2.029200 TGTTTCCATCATGTTGCGCATT 60.029 40.909 12.75 0.00 35.19 3.56
198 199 1.545136 TGTTTCCATCATGTTGCGCAT 59.455 42.857 12.75 0.00 38.60 4.73
199 200 0.957362 TGTTTCCATCATGTTGCGCA 59.043 45.000 5.66 5.66 0.00 6.09
200 201 1.339711 GTGTTTCCATCATGTTGCGC 58.660 50.000 0.00 0.00 0.00 6.09
201 202 1.728825 CGGTGTTTCCATCATGTTGCG 60.729 52.381 0.00 0.00 35.57 4.85
202 203 1.539388 TCGGTGTTTCCATCATGTTGC 59.461 47.619 0.00 0.00 35.57 4.17
203 204 2.813754 ACTCGGTGTTTCCATCATGTTG 59.186 45.455 0.00 0.00 35.57 3.33
204 205 3.140325 ACTCGGTGTTTCCATCATGTT 57.860 42.857 0.00 0.00 35.57 2.71
205 206 2.859165 ACTCGGTGTTTCCATCATGT 57.141 45.000 0.00 0.00 35.57 3.21
206 207 2.420022 GGAACTCGGTGTTTCCATCATG 59.580 50.000 0.00 0.00 39.30 3.07
207 208 2.039746 TGGAACTCGGTGTTTCCATCAT 59.960 45.455 0.00 0.00 39.30 2.45
208 209 1.418264 TGGAACTCGGTGTTTCCATCA 59.582 47.619 0.00 0.00 39.30 3.07
209 210 2.178912 TGGAACTCGGTGTTTCCATC 57.821 50.000 0.00 0.00 39.30 3.51
210 211 2.879103 ATGGAACTCGGTGTTTCCAT 57.121 45.000 9.58 9.58 39.47 3.41
211 212 2.649531 AATGGAACTCGGTGTTTCCA 57.350 45.000 5.56 5.56 39.30 3.53
212 213 2.228103 GGAAATGGAACTCGGTGTTTCC 59.772 50.000 0.00 0.00 39.30 3.13
213 214 2.228103 GGGAAATGGAACTCGGTGTTTC 59.772 50.000 0.00 0.00 39.30 2.78
214 215 2.235891 GGGAAATGGAACTCGGTGTTT 58.764 47.619 0.00 0.00 39.30 2.83
215 216 1.144093 TGGGAAATGGAACTCGGTGTT 59.856 47.619 0.00 0.00 42.38 3.32
216 217 0.768622 TGGGAAATGGAACTCGGTGT 59.231 50.000 0.00 0.00 0.00 4.16
217 218 2.017049 GATGGGAAATGGAACTCGGTG 58.983 52.381 0.00 0.00 0.00 4.94
218 219 1.406887 CGATGGGAAATGGAACTCGGT 60.407 52.381 0.00 0.00 0.00 4.69
219 220 1.299541 CGATGGGAAATGGAACTCGG 58.700 55.000 0.00 0.00 0.00 4.63
220 221 0.657840 GCGATGGGAAATGGAACTCG 59.342 55.000 0.00 0.00 0.00 4.18
221 222 1.401905 GTGCGATGGGAAATGGAACTC 59.598 52.381 0.00 0.00 0.00 3.01
222 223 1.463674 GTGCGATGGGAAATGGAACT 58.536 50.000 0.00 0.00 0.00 3.01
223 224 0.098728 CGTGCGATGGGAAATGGAAC 59.901 55.000 0.00 0.00 0.00 3.62
224 225 0.035915 TCGTGCGATGGGAAATGGAA 60.036 50.000 0.00 0.00 0.00 3.53
225 226 0.461870 CTCGTGCGATGGGAAATGGA 60.462 55.000 0.00 0.00 0.00 3.41
226 227 1.439353 CCTCGTGCGATGGGAAATGG 61.439 60.000 0.00 0.00 0.00 3.16
227 228 0.461870 TCCTCGTGCGATGGGAAATG 60.462 55.000 0.00 0.00 0.00 2.32
228 229 0.179073 CTCCTCGTGCGATGGGAAAT 60.179 55.000 4.55 0.00 0.00 2.17
229 230 1.218047 CTCCTCGTGCGATGGGAAA 59.782 57.895 4.55 0.00 0.00 3.13
230 231 1.254975 TTCTCCTCGTGCGATGGGAA 61.255 55.000 7.83 7.83 29.09 3.97
231 232 1.254975 TTTCTCCTCGTGCGATGGGA 61.255 55.000 0.00 0.00 0.00 4.37
232 233 0.391130 TTTTCTCCTCGTGCGATGGG 60.391 55.000 0.00 0.00 0.00 4.00
233 234 0.721718 GTTTTCTCCTCGTGCGATGG 59.278 55.000 0.00 0.00 0.00 3.51
234 235 1.391485 CTGTTTTCTCCTCGTGCGATG 59.609 52.381 0.00 0.00 0.00 3.84
235 236 1.272490 TCTGTTTTCTCCTCGTGCGAT 59.728 47.619 0.00 0.00 0.00 4.58
236 237 0.671796 TCTGTTTTCTCCTCGTGCGA 59.328 50.000 0.00 0.00 0.00 5.10
237 238 0.784778 GTCTGTTTTCTCCTCGTGCG 59.215 55.000 0.00 0.00 0.00 5.34
238 239 0.784778 CGTCTGTTTTCTCCTCGTGC 59.215 55.000 0.00 0.00 0.00 5.34
239 240 1.787155 CACGTCTGTTTTCTCCTCGTG 59.213 52.381 0.00 0.00 40.33 4.35
240 241 1.407979 ACACGTCTGTTTTCTCCTCGT 59.592 47.619 0.00 0.00 0.00 4.18
241 242 1.787155 CACACGTCTGTTTTCTCCTCG 59.213 52.381 0.00 0.00 0.00 4.63
242 243 2.822764 ACACACGTCTGTTTTCTCCTC 58.177 47.619 0.00 0.00 0.00 3.71
243 244 2.981859 ACACACGTCTGTTTTCTCCT 57.018 45.000 0.00 0.00 0.00 3.69
244 245 5.668558 ATTTACACACGTCTGTTTTCTCC 57.331 39.130 0.65 0.00 0.00 3.71
245 246 6.711579 TGAATTTACACACGTCTGTTTTCTC 58.288 36.000 0.65 0.00 0.00 2.87
246 247 6.671614 TGAATTTACACACGTCTGTTTTCT 57.328 33.333 0.65 0.00 0.00 2.52
247 248 7.271653 TGTTTGAATTTACACACGTCTGTTTTC 59.728 33.333 0.65 4.74 0.00 2.29
248 249 7.085116 TGTTTGAATTTACACACGTCTGTTTT 58.915 30.769 0.65 0.00 0.00 2.43
249 250 6.613233 TGTTTGAATTTACACACGTCTGTTT 58.387 32.000 0.65 0.00 0.00 2.83
250 251 6.184580 TGTTTGAATTTACACACGTCTGTT 57.815 33.333 0.65 0.00 0.00 3.16
251 252 5.804692 TGTTTGAATTTACACACGTCTGT 57.195 34.783 1.15 1.15 0.00 3.41
252 253 7.678194 ATTTGTTTGAATTTACACACGTCTG 57.322 32.000 0.00 0.00 0.00 3.51
253 254 8.399425 TGTATTTGTTTGAATTTACACACGTCT 58.601 29.630 0.00 0.00 0.00 4.18
254 255 8.466026 GTGTATTTGTTTGAATTTACACACGTC 58.534 33.333 7.57 0.00 37.21 4.34
255 256 7.164498 CGTGTATTTGTTTGAATTTACACACGT 59.836 33.333 0.00 0.00 36.81 4.49
256 257 7.373703 TCGTGTATTTGTTTGAATTTACACACG 59.626 33.333 0.00 0.00 39.91 4.49
257 258 8.466026 GTCGTGTATTTGTTTGAATTTACACAC 58.534 33.333 11.37 0.00 37.12 3.82
258 259 8.182227 TGTCGTGTATTTGTTTGAATTTACACA 58.818 29.630 11.37 0.38 37.12 3.72
259 260 8.549777 TGTCGTGTATTTGTTTGAATTTACAC 57.450 30.769 0.00 0.00 34.83 2.90
262 263 9.828852 GGTATGTCGTGTATTTGTTTGAATTTA 57.171 29.630 0.00 0.00 0.00 1.40
263 264 8.353684 TGGTATGTCGTGTATTTGTTTGAATTT 58.646 29.630 0.00 0.00 0.00 1.82
264 265 7.806014 GTGGTATGTCGTGTATTTGTTTGAATT 59.194 33.333 0.00 0.00 0.00 2.17
265 266 7.302524 GTGGTATGTCGTGTATTTGTTTGAAT 58.697 34.615 0.00 0.00 0.00 2.57
266 267 6.564312 CGTGGTATGTCGTGTATTTGTTTGAA 60.564 38.462 0.00 0.00 0.00 2.69
267 268 5.107414 CGTGGTATGTCGTGTATTTGTTTGA 60.107 40.000 0.00 0.00 0.00 2.69
268 269 5.076765 CGTGGTATGTCGTGTATTTGTTTG 58.923 41.667 0.00 0.00 0.00 2.93
269 270 4.751098 ACGTGGTATGTCGTGTATTTGTTT 59.249 37.500 0.00 0.00 38.85 2.83
270 271 4.309099 ACGTGGTATGTCGTGTATTTGTT 58.691 39.130 0.00 0.00 38.85 2.83
271 272 3.916761 ACGTGGTATGTCGTGTATTTGT 58.083 40.909 0.00 0.00 38.85 2.83
279 280 2.263540 GGCCACGTGGTATGTCGT 59.736 61.111 33.92 0.00 40.99 4.34
280 281 1.809619 CTGGCCACGTGGTATGTCG 60.810 63.158 33.92 13.98 37.57 4.35
281 282 0.460284 CTCTGGCCACGTGGTATGTC 60.460 60.000 33.92 17.73 37.57 3.06
282 283 1.596934 CTCTGGCCACGTGGTATGT 59.403 57.895 33.92 0.00 37.57 2.29
283 284 1.815421 GCTCTGGCCACGTGGTATG 60.815 63.158 33.92 22.81 37.57 2.39
284 285 1.836999 TTGCTCTGGCCACGTGGTAT 61.837 55.000 33.92 0.00 37.74 2.73
285 286 1.836999 ATTGCTCTGGCCACGTGGTA 61.837 55.000 33.92 22.35 37.74 3.25
286 287 3.196207 ATTGCTCTGGCCACGTGGT 62.196 57.895 33.92 9.66 37.74 4.16
287 288 2.360350 ATTGCTCTGGCCACGTGG 60.360 61.111 30.66 30.66 37.74 4.94
288 289 2.693762 CCATTGCTCTGGCCACGTG 61.694 63.158 9.08 9.08 37.74 4.49
289 290 2.202236 ATCCATTGCTCTGGCCACGT 62.202 55.000 0.00 0.00 36.16 4.49
290 291 1.452651 ATCCATTGCTCTGGCCACG 60.453 57.895 0.00 0.00 36.16 4.94
291 292 2.112898 CATCCATTGCTCTGGCCAC 58.887 57.895 0.00 0.00 36.16 5.01
292 293 4.670199 CATCCATTGCTCTGGCCA 57.330 55.556 4.71 4.71 36.16 5.36
301 302 1.091771 AGAAGTCGGCGCATCCATTG 61.092 55.000 10.83 0.00 34.01 2.82
302 303 0.464036 TAGAAGTCGGCGCATCCATT 59.536 50.000 10.83 0.00 34.01 3.16
303 304 0.464036 TTAGAAGTCGGCGCATCCAT 59.536 50.000 10.83 0.00 34.01 3.41
304 305 0.248012 TTTAGAAGTCGGCGCATCCA 59.752 50.000 10.83 0.00 34.01 3.41
305 306 1.365699 TTTTAGAAGTCGGCGCATCC 58.634 50.000 10.83 0.00 0.00 3.51
306 307 4.789095 TTATTTTAGAAGTCGGCGCATC 57.211 40.909 10.83 0.00 0.00 3.91
307 308 5.554822 TTTTATTTTAGAAGTCGGCGCAT 57.445 34.783 10.83 0.00 0.00 4.73
308 309 5.359716 TTTTTATTTTAGAAGTCGGCGCA 57.640 34.783 10.83 0.00 0.00 6.09
351 352 9.261180 GCACACACAACTATACTGTTATATGAT 57.739 33.333 0.00 0.00 0.00 2.45
352 353 8.254508 TGCACACACAACTATACTGTTATATGA 58.745 33.333 0.00 0.00 0.00 2.15
353 354 8.419076 TGCACACACAACTATACTGTTATATG 57.581 34.615 0.00 0.00 0.00 1.78
354 355 9.443323 TTTGCACACACAACTATACTGTTATAT 57.557 29.630 0.00 0.00 0.00 0.86
355 356 8.834749 TTTGCACACACAACTATACTGTTATA 57.165 30.769 0.00 0.00 0.00 0.98
356 357 7.737972 TTTGCACACACAACTATACTGTTAT 57.262 32.000 0.00 0.00 0.00 1.89
357 358 7.555306 TTTTGCACACACAACTATACTGTTA 57.445 32.000 0.00 0.00 0.00 2.41
358 359 6.443934 TTTTGCACACACAACTATACTGTT 57.556 33.333 0.00 0.00 0.00 3.16
359 360 6.443934 TTTTTGCACACACAACTATACTGT 57.556 33.333 0.00 0.00 0.00 3.55
389 390 0.323725 AAATCTCTGGCCACGGCATT 60.324 50.000 0.00 0.00 44.11 3.56
394 395 0.463833 GGGGTAAATCTCTGGCCACG 60.464 60.000 0.00 0.00 0.00 4.94
396 397 1.632018 CCGGGGTAAATCTCTGGCCA 61.632 60.000 4.71 4.71 36.11 5.36
401 402 7.179966 AGAAAATAAAACCGGGGTAAATCTCT 58.820 34.615 6.32 0.00 0.00 3.10
409 410 4.650131 TGTTTGAGAAAATAAAACCGGGGT 59.350 37.500 6.32 0.00 33.76 4.95
410 411 5.203060 TGTTTGAGAAAATAAAACCGGGG 57.797 39.130 6.32 0.00 33.76 5.73
413 414 9.683651 GAACTTTTGTTTGAGAAAATAAAACCG 57.316 29.630 2.86 0.00 43.66 4.44
420 421 7.495606 GGGACATGAACTTTTGTTTGAGAAAAT 59.504 33.333 0.00 0.00 43.66 1.82
421 422 6.816140 GGGACATGAACTTTTGTTTGAGAAAA 59.184 34.615 0.00 0.00 43.66 2.29
422 423 6.337356 GGGACATGAACTTTTGTTTGAGAAA 58.663 36.000 0.00 0.00 43.66 2.52
423 424 5.163457 GGGGACATGAACTTTTGTTTGAGAA 60.163 40.000 0.00 0.00 43.66 2.87
424 425 4.340950 GGGGACATGAACTTTTGTTTGAGA 59.659 41.667 0.00 0.00 43.66 3.27
425 426 4.099266 TGGGGACATGAACTTTTGTTTGAG 59.901 41.667 0.00 0.00 38.02 3.02
426 427 4.026744 TGGGGACATGAACTTTTGTTTGA 58.973 39.130 0.00 0.00 38.02 2.69
427 428 4.399004 TGGGGACATGAACTTTTGTTTG 57.601 40.909 0.00 0.00 38.02 2.93
462 463 3.003689 GGAATCACAAGTTGAGGTGTGTG 59.996 47.826 10.54 0.00 44.45 3.82
477 478 3.057526 GTGGGCTTAACTTGTGGAATCAC 60.058 47.826 0.00 0.00 43.87 3.06
578 586 1.112113 GAGCTGGAACGTGGGATAGA 58.888 55.000 0.00 0.00 0.00 1.98
579 587 1.067821 GAGAGCTGGAACGTGGGATAG 59.932 57.143 0.00 0.00 0.00 2.08
580 588 1.112113 GAGAGCTGGAACGTGGGATA 58.888 55.000 0.00 0.00 0.00 2.59
581 589 1.617947 GGAGAGCTGGAACGTGGGAT 61.618 60.000 0.00 0.00 0.00 3.85
597 605 2.156343 GCTATGTTTAGCGGGAGGAG 57.844 55.000 0.00 0.00 41.38 3.69
673 681 0.317160 GGTGGTTGGCTGGCTTTAAC 59.683 55.000 2.00 0.00 0.00 2.01
868 927 0.386113 CCGGATTCCTCGAAGTCCTC 59.614 60.000 0.00 0.00 0.00 3.71
877 936 0.179070 GTCTTCAGGCCGGATTCCTC 60.179 60.000 5.05 0.00 0.00 3.71
883 942 2.345760 GGTACGTCTTCAGGCCGGA 61.346 63.158 5.05 0.00 0.00 5.14
884 943 2.183555 GGTACGTCTTCAGGCCGG 59.816 66.667 0.00 0.00 0.00 6.13
1158 1220 0.321298 GCGTGTAGGTGGTGGTGATT 60.321 55.000 0.00 0.00 0.00 2.57
1159 1221 1.295423 GCGTGTAGGTGGTGGTGAT 59.705 57.895 0.00 0.00 0.00 3.06
1239 1301 4.907034 CCGACGATGACGCCCTCG 62.907 72.222 0.00 0.00 43.96 4.63
1258 1320 1.226603 CGATCCCGTTGTCGAGGAC 60.227 63.158 0.00 0.00 40.11 3.85
1365 1427 1.129998 CCGATGAGCTTCTTGTTGCAG 59.870 52.381 0.00 0.00 0.00 4.41
1578 1648 4.735132 TGGAACGCGCCCTTCTCG 62.735 66.667 17.37 0.00 0.00 4.04
1692 1768 2.257371 CTGACGAAGACGCCGGAA 59.743 61.111 5.05 0.00 43.96 4.30
1842 1918 2.087009 GTTCAGGTTCTCGCCGTCG 61.087 63.158 0.00 0.00 0.00 5.12
2127 2212 2.423031 CGTGGAGTTGACGTACGCG 61.423 63.158 16.72 3.53 44.93 6.01
2568 2653 4.051167 TAGACGAGCCCCGGGTCA 62.051 66.667 21.85 0.00 43.93 4.02
2885 3167 1.905215 ACTCCATCCTCTGGTTCACTG 59.095 52.381 0.00 0.00 46.08 3.66
3021 3315 0.887387 TTCGTTAGTTGGGCAGTGGC 60.887 55.000 8.47 8.47 40.13 5.01
3056 3364 2.826738 AGGAGAGAGCTCGGCGAC 60.827 66.667 4.99 3.12 42.25 5.19
3077 3385 8.356657 GCTGCTTCTCCCTACATATATACATAG 58.643 40.741 0.00 0.00 0.00 2.23
3092 3400 0.108233 CTGACAGAGCTGCTTCTCCC 60.108 60.000 2.53 0.00 33.66 4.30
3122 3430 2.715749 TCTTCCATGGCATCGTCAAT 57.284 45.000 6.96 0.00 0.00 2.57
3123 3431 2.093021 TCATCTTCCATGGCATCGTCAA 60.093 45.455 6.96 0.00 0.00 3.18
3124 3432 1.485895 TCATCTTCCATGGCATCGTCA 59.514 47.619 6.96 0.00 0.00 4.35
3125 3433 1.869767 GTCATCTTCCATGGCATCGTC 59.130 52.381 6.96 0.00 0.00 4.20
3166 3501 3.527665 AGGTATTGAGCAACATAGGGGTT 59.472 43.478 0.00 0.00 0.00 4.11
3167 3502 3.123273 AGGTATTGAGCAACATAGGGGT 58.877 45.455 0.00 0.00 0.00 4.95
3168 3503 3.136443 TGAGGTATTGAGCAACATAGGGG 59.864 47.826 0.00 0.00 0.00 4.79
3169 3504 4.422073 TGAGGTATTGAGCAACATAGGG 57.578 45.455 0.00 0.00 0.00 3.53
3176 3511 3.244526 TGAGCAGTTGAGGTATTGAGCAA 60.245 43.478 0.00 0.00 0.00 3.91
3181 3516 2.421424 GGCTTGAGCAGTTGAGGTATTG 59.579 50.000 5.24 0.00 44.36 1.90
3184 3519 1.055849 TGGCTTGAGCAGTTGAGGTA 58.944 50.000 5.24 0.00 44.36 3.08
3192 3527 6.484643 ACAGTATATACATTTGGCTTGAGCAG 59.515 38.462 15.18 0.00 44.36 4.24
3193 3528 6.356556 ACAGTATATACATTTGGCTTGAGCA 58.643 36.000 15.18 0.00 44.36 4.26
3194 3529 6.867662 ACAGTATATACATTTGGCTTGAGC 57.132 37.500 15.18 0.00 41.14 4.26
3195 3530 8.887036 TGTACAGTATATACATTTGGCTTGAG 57.113 34.615 15.18 0.00 0.00 3.02
3196 3531 9.845740 ATTGTACAGTATATACATTTGGCTTGA 57.154 29.630 15.18 0.00 32.70 3.02
3398 6494 4.873827 TCAAACATTACTACTCGATTGGGC 59.126 41.667 0.00 0.00 0.00 5.36
3405 6501 9.737427 AGAGATTACATCAAACATTACTACTCG 57.263 33.333 0.00 0.00 0.00 4.18
3447 6543 0.539986 ATGAGAACCCGCCGTTGTAT 59.460 50.000 0.00 0.00 33.74 2.29
3528 6625 0.109272 TCTCGATCGCGTGCTTCTTT 60.109 50.000 11.09 0.00 38.98 2.52
3652 7194 9.311916 CTTCCTAATTTTGTTGTGAACATTCAA 57.688 29.630 0.00 0.00 41.79 2.69
3672 7214 9.734984 CAAATTACTTTCTTTAGGTCCTTCCTA 57.265 33.333 0.00 0.00 46.10 2.94
3705 7247 9.643693 AGTTCTTCATTGGTTATTGCTAAATTG 57.356 29.630 0.00 0.00 0.00 2.32
3781 7338 4.582701 TGGAAGGTGCAATTTACAGTTG 57.417 40.909 0.00 0.00 0.00 3.16
3827 7384 5.922053 TCTTCCCACAATAGATGATGTCAG 58.078 41.667 0.00 0.00 0.00 3.51
3830 7387 6.566079 TTCTCTTCCCACAATAGATGATGT 57.434 37.500 0.00 0.00 0.00 3.06
3831 7388 7.870509 TTTTCTCTTCCCACAATAGATGATG 57.129 36.000 0.00 0.00 0.00 3.07
3905 7467 7.441157 TGATGAGCTTTACCGATTTACTATTGG 59.559 37.037 0.00 0.00 0.00 3.16
3918 7480 7.104290 ACCTTAGTAAGTTGATGAGCTTTACC 58.896 38.462 9.05 0.00 0.00 2.85
3924 7486 6.426937 TGTTGAACCTTAGTAAGTTGATGAGC 59.573 38.462 9.05 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.