Multiple sequence alignment - TraesCS2B01G036800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G036800 chr2B 100.000 4147 0 0 1 4147 17430341 17434487 0.000000e+00 7659.0
1 TraesCS2B01G036800 chr2B 83.117 1078 153 20 1614 2675 17369580 17368516 0.000000e+00 955.0
2 TraesCS2B01G036800 chr2B 89.015 528 50 3 2725 3247 16857172 16857696 0.000000e+00 647.0
3 TraesCS2B01G036800 chr2B 85.243 515 73 3 2732 3245 16827863 16828375 1.020000e-145 527.0
4 TraesCS2B01G036800 chr2B 92.775 346 23 2 1198 1542 17370051 17369707 2.230000e-137 499.0
5 TraesCS2B01G036800 chr2B 93.808 323 20 0 3825 4147 17091464 17091786 1.730000e-133 486.0
6 TraesCS2B01G036800 chr2B 81.895 475 59 16 1071 1523 16855670 16856139 3.910000e-100 375.0
7 TraesCS2B01G036800 chr2B 86.478 318 37 6 3824 4138 17030194 17030508 1.100000e-90 344.0
8 TraesCS2B01G036800 chr2B 86.032 315 19 16 1 294 17027703 17028013 8.650000e-82 315.0
9 TraesCS2B01G036800 chr2B 79.254 429 66 14 2725 3135 17368523 17368100 1.140000e-70 278.0
10 TraesCS2B01G036800 chr2B 83.575 207 22 4 994 1196 16814188 16814386 2.550000e-42 183.0
11 TraesCS2B01G036800 chr2B 94.737 114 6 0 1071 1184 17370277 17370164 1.180000e-40 178.0
12 TraesCS2B01G036800 chr2B 86.869 99 9 4 3743 3838 16894390 16894487 1.580000e-19 108.0
13 TraesCS2B01G036800 chr2B 78.659 164 33 2 3985 4147 17584248 17584086 1.580000e-19 108.0
14 TraesCS2B01G036800 chr2B 92.105 76 4 1 3645 3718 16880483 16880558 5.670000e-19 106.0
15 TraesCS2B01G036800 chr2B 87.654 81 4 3 915 989 17370397 17370317 5.710000e-14 89.8
16 TraesCS2B01G036800 chr2B 80.808 99 17 2 3825 3922 17495283 17495380 4.450000e-10 76.8
17 TraesCS2B01G036800 chrUn 81.157 2144 296 50 1092 3164 12181198 12183304 0.000000e+00 1622.0
18 TraesCS2B01G036800 chrUn 91.894 1135 56 14 2246 3362 12636146 12635030 0.000000e+00 1554.0
19 TraesCS2B01G036800 chrUn 90.723 830 41 13 753 1559 321897598 321898414 0.000000e+00 1074.0
20 TraesCS2B01G036800 chrUn 90.723 830 41 13 753 1559 351861315 351862131 0.000000e+00 1074.0
21 TraesCS2B01G036800 chrUn 95.874 509 21 0 1726 2234 12636745 12636237 0.000000e+00 824.0
22 TraesCS2B01G036800 chrUn 88.351 558 43 10 91 637 321897051 321897597 0.000000e+00 651.0
23 TraesCS2B01G036800 chrUn 88.351 558 43 10 91 637 351860768 351861314 0.000000e+00 651.0
24 TraesCS2B01G036800 chrUn 86.025 322 39 5 3825 4143 313026973 313026655 1.430000e-89 340.0
25 TraesCS2B01G036800 chrUn 80.428 327 51 13 3825 4145 463211198 463210879 1.930000e-58 237.0
26 TraesCS2B01G036800 chrUn 79.817 327 53 13 3825 4145 403133137 403133456 4.170000e-55 226.0
27 TraesCS2B01G036800 chrUn 94.444 90 3 1 3631 3718 12634990 12634901 2.010000e-28 137.0
28 TraesCS2B01G036800 chrUn 93.750 64 4 0 400 463 321897395 321897458 3.410000e-16 97.1
29 TraesCS2B01G036800 chrUn 93.750 64 4 0 400 463 351861112 351861175 3.410000e-16 97.1
30 TraesCS2B01G036800 chr2A 80.227 1765 256 53 1586 3316 11916125 11914420 0.000000e+00 1240.0
31 TraesCS2B01G036800 chr2A 77.955 1320 218 50 1197 2490 11637868 11639140 0.000000e+00 758.0
32 TraesCS2B01G036800 chr2A 83.056 720 70 24 915 1606 11916875 11916180 1.270000e-169 606.0
33 TraesCS2B01G036800 chr2A 73.133 897 178 42 1738 2593 11620867 11621741 3.180000e-66 263.0
34 TraesCS2B01G036800 chr2A 76.534 277 59 5 3824 4097 11994375 11994102 3.340000e-31 147.0
35 TraesCS2B01G036800 chr2A 88.000 100 3 5 3739 3830 11901503 11901405 4.380000e-20 110.0
36 TraesCS2B01G036800 chr2A 81.818 99 16 2 3825 3922 11704966 11705063 9.560000e-12 82.4
37 TraesCS2B01G036800 chr2D 83.446 888 125 12 1659 2531 11214878 11215758 0.000000e+00 806.0
38 TraesCS2B01G036800 chr2D 78.241 1319 213 48 1197 2490 10975360 10976629 0.000000e+00 778.0
39 TraesCS2B01G036800 chr2D 85.116 692 61 17 933 1603 11038146 11038816 0.000000e+00 669.0
40 TraesCS2B01G036800 chr2D 82.857 735 103 17 1586 2310 11038870 11039591 4.520000e-179 638.0
41 TraesCS2B01G036800 chr2D 82.587 603 88 11 1425 2019 316147116 316146523 2.210000e-142 516.0
42 TraesCS2B01G036800 chr2D 82.587 603 88 11 1425 2019 616930700 616930107 2.210000e-142 516.0
43 TraesCS2B01G036800 chr2D 81.319 455 68 9 2725 3164 11040114 11040566 1.830000e-93 353.0
44 TraesCS2B01G036800 chr2D 86.604 321 41 2 3825 4144 11167544 11167863 1.830000e-93 353.0
45 TraesCS2B01G036800 chr2D 84.062 320 51 0 3828 4147 11392082 11391763 4.030000e-80 309.0
46 TraesCS2B01G036800 chr2D 76.364 275 63 2 3824 4097 11389132 11388859 3.340000e-31 147.0
47 TraesCS2B01G036800 chr3B 99.074 108 1 0 645 752 63469009 63469116 1.180000e-45 195.0
48 TraesCS2B01G036800 chr7B 98.182 110 2 0 646 755 548384353 548384244 4.230000e-45 193.0
49 TraesCS2B01G036800 chr7B 92.857 126 8 1 637 762 622241450 622241326 9.160000e-42 182.0
50 TraesCS2B01G036800 chr6B 98.182 110 2 0 646 755 214085049 214085158 4.230000e-45 193.0
51 TraesCS2B01G036800 chr6B 94.737 114 6 0 639 752 27997280 27997393 1.180000e-40 178.0
52 TraesCS2B01G036800 chr5B 97.321 112 2 1 645 755 9643308 9643419 5.470000e-44 189.0
53 TraesCS2B01G036800 chr4B 93.750 128 5 2 627 753 17258636 17258761 5.470000e-44 189.0
54 TraesCS2B01G036800 chr3A 94.915 118 6 0 645 762 707385860 707385977 7.080000e-43 185.0
55 TraesCS2B01G036800 chr6A 94.215 121 6 1 641 760 607450370 607450250 2.550000e-42 183.0
56 TraesCS2B01G036800 chr5D 77.228 303 53 9 2916 3205 24798895 24798596 3.320000e-36 163.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G036800 chr2B 17430341 17434487 4146 False 7659.000000 7659 100.000000 1 4147 1 chr2B.!!$F6 4146
1 TraesCS2B01G036800 chr2B 16827863 16828375 512 False 527.000000 527 85.243000 2732 3245 1 chr2B.!!$F2 513
2 TraesCS2B01G036800 chr2B 16855670 16857696 2026 False 511.000000 647 85.455000 1071 3247 2 chr2B.!!$F8 2176
3 TraesCS2B01G036800 chr2B 17368100 17370397 2297 True 399.960000 955 87.507400 915 3135 5 chr2B.!!$R2 2220
4 TraesCS2B01G036800 chr2B 17027703 17030508 2805 False 329.500000 344 86.255000 1 4138 2 chr2B.!!$F9 4137
5 TraesCS2B01G036800 chrUn 12181198 12183304 2106 False 1622.000000 1622 81.157000 1092 3164 1 chrUn.!!$F1 2072
6 TraesCS2B01G036800 chrUn 12634901 12636745 1844 True 838.333333 1554 94.070667 1726 3718 3 chrUn.!!$R3 1992
7 TraesCS2B01G036800 chrUn 321897051 321898414 1363 False 607.366667 1074 90.941333 91 1559 3 chrUn.!!$F3 1468
8 TraesCS2B01G036800 chrUn 351860768 351862131 1363 False 607.366667 1074 90.941333 91 1559 3 chrUn.!!$F4 1468
9 TraesCS2B01G036800 chr2A 11914420 11916875 2455 True 923.000000 1240 81.641500 915 3316 2 chr2A.!!$R3 2401
10 TraesCS2B01G036800 chr2A 11637868 11639140 1272 False 758.000000 758 77.955000 1197 2490 1 chr2A.!!$F2 1293
11 TraesCS2B01G036800 chr2A 11620867 11621741 874 False 263.000000 263 73.133000 1738 2593 1 chr2A.!!$F1 855
12 TraesCS2B01G036800 chr2D 11214878 11215758 880 False 806.000000 806 83.446000 1659 2531 1 chr2D.!!$F3 872
13 TraesCS2B01G036800 chr2D 10975360 10976629 1269 False 778.000000 778 78.241000 1197 2490 1 chr2D.!!$F1 1293
14 TraesCS2B01G036800 chr2D 11038146 11040566 2420 False 553.333333 669 83.097333 933 3164 3 chr2D.!!$F4 2231
15 TraesCS2B01G036800 chr2D 316146523 316147116 593 True 516.000000 516 82.587000 1425 2019 1 chr2D.!!$R1 594
16 TraesCS2B01G036800 chr2D 616930107 616930700 593 True 516.000000 516 82.587000 1425 2019 1 chr2D.!!$R2 594
17 TraesCS2B01G036800 chr2D 11388859 11392082 3223 True 228.000000 309 80.213000 3824 4147 2 chr2D.!!$R3 323

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
748 781 0.038744 AGTAGTTCCGAACGGAGGGA 59.961 55.0 15.34 0.0 46.06 4.20 F
2204 2529 0.034863 TGCCCCCGGAACAGTTTATC 60.035 55.0 0.73 0.0 0.00 1.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2744 3436 0.250597 TGTCACAGCTGCTCTGCAAT 60.251 50.0 15.27 0.0 46.76 3.56 R
3557 4323 0.030195 TCCAGTGCCCATCCTATCCA 60.030 55.0 0.00 0.0 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 5.046663 TGTGGGATTTTCTTTGCTATTTCCC 60.047 40.000 0.00 0.00 41.63 3.97
58 59 6.108687 GGGATTTTCTTTGCTATTTCCCTTG 58.891 40.000 0.00 0.00 38.81 3.61
72 73 5.350504 TTTCCCTTGCTTTTGATTCAACA 57.649 34.783 0.00 0.00 0.00 3.33
76 77 7.953005 TCCCTTGCTTTTGATTCAACATATA 57.047 32.000 0.00 0.00 0.00 0.86
146 168 7.801716 AATAGATAGATAGATGAGGAGCGTC 57.198 40.000 0.00 0.00 0.00 5.19
184 206 5.879223 TCGAAGAGTAGTACAAACTAGGAGG 59.121 44.000 2.52 0.00 38.89 4.30
197 219 2.785857 ACTAGGAGGCCCATATTTTGCT 59.214 45.455 0.00 0.00 33.88 3.91
222 244 2.815647 GTCTTCCTTCGGGCGCTG 60.816 66.667 7.64 0.00 34.44 5.18
256 278 1.297967 CTCCGCAGAGATGTCGACG 60.298 63.158 11.62 0.00 43.39 5.12
257 279 2.278206 CCGCAGAGATGTCGACGG 60.278 66.667 11.62 11.19 38.94 4.79
258 280 2.761195 CCGCAGAGATGTCGACGGA 61.761 63.158 17.88 0.00 44.41 4.69
259 281 1.136774 CGCAGAGATGTCGACGGAA 59.863 57.895 11.62 0.00 0.00 4.30
295 317 1.401905 CAGCGCATCCCTTTTTCCTAC 59.598 52.381 11.47 0.00 0.00 3.18
296 318 0.377203 GCGCATCCCTTTTTCCTACG 59.623 55.000 0.30 0.00 0.00 3.51
304 329 3.835978 TCCCTTTTTCCTACGACAGATCA 59.164 43.478 0.00 0.00 0.00 2.92
467 492 2.268920 GCTCCATCGTCTTGGCCA 59.731 61.111 0.00 0.00 36.66 5.36
470 495 2.184020 CTCCATCGTCTTGGCCACCA 62.184 60.000 3.88 0.00 36.66 4.17
511 536 0.471191 TGCATCATCGCCTTCCTCAT 59.529 50.000 0.00 0.00 0.00 2.90
518 543 0.895530 TCGCCTTCCTCATCTTCGTT 59.104 50.000 0.00 0.00 0.00 3.85
527 552 1.993370 CTCATCTTCGTTCGTTGTCCC 59.007 52.381 0.00 0.00 0.00 4.46
541 566 2.118732 TCCCGGTCAGTGGCACTA 59.881 61.111 21.59 6.27 0.00 2.74
586 618 0.443869 CAAGGAAATCACGCAGTCGG 59.556 55.000 0.00 0.00 41.61 4.79
592 624 0.606604 AATCACGCAGTCGGGTACTT 59.393 50.000 0.00 0.00 41.61 2.24
605 637 7.254353 GCAGTCGGGTACTTGATTTAGTAATTC 60.254 40.741 0.00 0.00 35.76 2.17
608 640 7.915397 GTCGGGTACTTGATTTAGTAATTCGTA 59.085 37.037 0.00 0.00 32.71 3.43
637 670 4.578928 TGAAACTTAGGGTCTGAAAGTTGC 59.421 41.667 6.09 5.23 41.36 4.17
638 671 4.439253 AACTTAGGGTCTGAAAGTTGCT 57.561 40.909 4.81 0.00 40.85 3.91
639 672 4.439253 ACTTAGGGTCTGAAAGTTGCTT 57.561 40.909 0.00 0.00 33.76 3.91
640 673 4.137543 ACTTAGGGTCTGAAAGTTGCTTG 58.862 43.478 0.00 0.00 33.76 4.01
641 674 1.322442 AGGGTCTGAAAGTTGCTTGC 58.678 50.000 0.00 0.00 33.76 4.01
642 675 1.133668 AGGGTCTGAAAGTTGCTTGCT 60.134 47.619 0.00 0.00 33.76 3.91
643 676 1.683385 GGGTCTGAAAGTTGCTTGCTT 59.317 47.619 0.00 0.00 33.76 3.91
644 677 2.287849 GGGTCTGAAAGTTGCTTGCTTC 60.288 50.000 0.00 0.00 33.76 3.86
645 678 2.620585 GGTCTGAAAGTTGCTTGCTTCT 59.379 45.455 0.00 0.00 33.76 2.85
646 679 3.815401 GGTCTGAAAGTTGCTTGCTTCTA 59.185 43.478 0.00 0.00 33.76 2.10
647 680 4.319839 GGTCTGAAAGTTGCTTGCTTCTAC 60.320 45.833 0.00 0.00 33.76 2.59
648 681 4.513318 GTCTGAAAGTTGCTTGCTTCTACT 59.487 41.667 0.00 0.00 33.76 2.57
649 682 4.752101 TCTGAAAGTTGCTTGCTTCTACTC 59.248 41.667 0.00 0.00 33.76 2.59
650 683 3.815401 TGAAAGTTGCTTGCTTCTACTCC 59.185 43.478 0.00 0.00 0.00 3.85
651 684 2.481289 AGTTGCTTGCTTCTACTCCC 57.519 50.000 0.00 0.00 0.00 4.30
652 685 1.981495 AGTTGCTTGCTTCTACTCCCT 59.019 47.619 0.00 0.00 0.00 4.20
653 686 2.027653 AGTTGCTTGCTTCTACTCCCTC 60.028 50.000 0.00 0.00 0.00 4.30
654 687 0.905357 TGCTTGCTTCTACTCCCTCC 59.095 55.000 0.00 0.00 0.00 4.30
655 688 0.179097 GCTTGCTTCTACTCCCTCCG 60.179 60.000 0.00 0.00 0.00 4.63
656 689 1.187087 CTTGCTTCTACTCCCTCCGT 58.813 55.000 0.00 0.00 0.00 4.69
657 690 1.550976 CTTGCTTCTACTCCCTCCGTT 59.449 52.381 0.00 0.00 0.00 4.44
658 691 1.183549 TGCTTCTACTCCCTCCGTTC 58.816 55.000 0.00 0.00 0.00 3.95
659 692 0.100861 GCTTCTACTCCCTCCGTTCG 59.899 60.000 0.00 0.00 0.00 3.95
660 693 0.739561 CTTCTACTCCCTCCGTTCGG 59.260 60.000 4.74 4.74 0.00 4.30
661 694 0.329261 TTCTACTCCCTCCGTTCGGA 59.671 55.000 13.34 13.34 0.00 4.55
662 695 0.329261 TCTACTCCCTCCGTTCGGAA 59.671 55.000 14.79 0.04 33.41 4.30
663 696 1.064166 TCTACTCCCTCCGTTCGGAAT 60.064 52.381 14.79 2.09 33.41 3.01
664 697 1.755380 CTACTCCCTCCGTTCGGAATT 59.245 52.381 14.79 0.00 33.41 2.17
665 698 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
666 699 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
667 700 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
668 701 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
669 702 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
670 703 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
671 704 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
672 705 3.581755 CTCCGTTCGGAATTACTTGTCA 58.418 45.455 14.79 0.00 33.41 3.58
673 706 4.181578 CTCCGTTCGGAATTACTTGTCAT 58.818 43.478 14.79 0.00 33.41 3.06
674 707 5.327616 TCCGTTCGGAATTACTTGTCATA 57.672 39.130 11.66 0.00 0.00 2.15
675 708 5.345702 TCCGTTCGGAATTACTTGTCATAG 58.654 41.667 11.66 0.00 0.00 2.23
676 709 5.125900 TCCGTTCGGAATTACTTGTCATAGA 59.874 40.000 11.66 0.00 0.00 1.98
677 710 5.808540 CCGTTCGGAATTACTTGTCATAGAA 59.191 40.000 5.19 0.00 0.00 2.10
678 711 6.311935 CCGTTCGGAATTACTTGTCATAGAAA 59.688 38.462 5.19 0.00 0.00 2.52
679 712 7.011109 CCGTTCGGAATTACTTGTCATAGAAAT 59.989 37.037 5.19 0.00 0.00 2.17
680 713 7.846107 CGTTCGGAATTACTTGTCATAGAAATG 59.154 37.037 0.00 0.00 0.00 2.32
681 714 7.786178 TCGGAATTACTTGTCATAGAAATGG 57.214 36.000 0.00 0.00 33.61 3.16
682 715 7.561251 TCGGAATTACTTGTCATAGAAATGGA 58.439 34.615 0.00 0.00 33.61 3.41
683 716 8.210946 TCGGAATTACTTGTCATAGAAATGGAT 58.789 33.333 0.00 0.00 33.61 3.41
684 717 8.285394 CGGAATTACTTGTCATAGAAATGGATG 58.715 37.037 0.00 0.00 33.61 3.51
685 718 9.125026 GGAATTACTTGTCATAGAAATGGATGT 57.875 33.333 0.00 0.00 33.61 3.06
725 758 9.967346 TTAGTTCTAGATACATCCATTTTCGAG 57.033 33.333 0.00 0.00 0.00 4.04
726 759 8.239038 AGTTCTAGATACATCCATTTTCGAGA 57.761 34.615 0.00 0.00 0.00 4.04
727 760 8.138712 AGTTCTAGATACATCCATTTTCGAGAC 58.861 37.037 0.00 0.00 0.00 3.36
728 761 7.582667 TCTAGATACATCCATTTTCGAGACA 57.417 36.000 0.00 0.00 0.00 3.41
729 762 8.007405 TCTAGATACATCCATTTTCGAGACAA 57.993 34.615 0.00 0.00 0.00 3.18
730 763 8.138074 TCTAGATACATCCATTTTCGAGACAAG 58.862 37.037 0.00 0.00 0.00 3.16
731 764 6.644347 AGATACATCCATTTTCGAGACAAGT 58.356 36.000 0.00 0.00 0.00 3.16
732 765 7.782049 AGATACATCCATTTTCGAGACAAGTA 58.218 34.615 0.00 0.00 0.00 2.24
733 766 7.923344 AGATACATCCATTTTCGAGACAAGTAG 59.077 37.037 0.00 0.00 0.00 2.57
734 767 5.794894 ACATCCATTTTCGAGACAAGTAGT 58.205 37.500 0.00 0.00 0.00 2.73
735 768 6.231211 ACATCCATTTTCGAGACAAGTAGTT 58.769 36.000 0.00 0.00 0.00 2.24
736 769 6.369065 ACATCCATTTTCGAGACAAGTAGTTC 59.631 38.462 0.00 0.00 0.00 3.01
737 770 5.235516 TCCATTTTCGAGACAAGTAGTTCC 58.764 41.667 0.00 0.00 0.00 3.62
738 771 4.091509 CCATTTTCGAGACAAGTAGTTCCG 59.908 45.833 0.00 0.00 0.00 4.30
739 772 4.572985 TTTTCGAGACAAGTAGTTCCGA 57.427 40.909 0.00 0.00 34.26 4.55
740 773 4.572985 TTTCGAGACAAGTAGTTCCGAA 57.427 40.909 0.00 0.00 40.20 4.30
741 774 3.549299 TCGAGACAAGTAGTTCCGAAC 57.451 47.619 2.81 2.81 33.55 3.95
742 775 2.096069 TCGAGACAAGTAGTTCCGAACG 60.096 50.000 5.62 0.00 33.55 3.95
743 776 2.593257 GAGACAAGTAGTTCCGAACGG 58.407 52.381 6.94 6.94 36.23 4.44
744 777 2.227388 GAGACAAGTAGTTCCGAACGGA 59.773 50.000 12.04 12.04 43.52 4.69
745 778 2.228343 AGACAAGTAGTTCCGAACGGAG 59.772 50.000 15.34 5.60 46.06 4.63
746 779 1.271656 ACAAGTAGTTCCGAACGGAGG 59.728 52.381 15.34 4.52 46.06 4.30
747 780 0.893447 AAGTAGTTCCGAACGGAGGG 59.107 55.000 15.34 0.00 46.06 4.30
748 781 0.038744 AGTAGTTCCGAACGGAGGGA 59.961 55.000 15.34 0.00 46.06 4.20
749 782 0.455005 GTAGTTCCGAACGGAGGGAG 59.545 60.000 15.34 0.00 46.06 4.30
750 783 0.038744 TAGTTCCGAACGGAGGGAGT 59.961 55.000 15.34 7.38 46.06 3.85
751 784 0.038744 AGTTCCGAACGGAGGGAGTA 59.961 55.000 15.34 0.00 46.06 2.59
768 801 7.726738 GGAGGGAGTAGTAATCTAGTCAAATCT 59.273 40.741 10.80 4.44 44.22 2.40
787 820 0.748367 TCTCTCCACCGTCGGATCTG 60.748 60.000 20.51 5.77 33.56 2.90
788 821 2.105128 CTCCACCGTCGGATCTGC 59.895 66.667 20.51 0.00 33.56 4.26
804 837 1.704628 TCTGCTTGATCCAAAGGTCCA 59.295 47.619 0.00 0.00 0.00 4.02
852 885 1.002888 CAGCCTTCTTCTTCCTCTGCA 59.997 52.381 0.00 0.00 0.00 4.41
871 904 0.615331 ATCTTCTTCTCCCGCAGCAA 59.385 50.000 0.00 0.00 0.00 3.91
876 909 1.301677 CTTCTCCCGCAGCAACCTTC 61.302 60.000 0.00 0.00 0.00 3.46
885 918 3.466836 CGCAGCAACCTTCATATTCCTA 58.533 45.455 0.00 0.00 0.00 2.94
893 926 6.205658 GCAACCTTCATATTCCTAGGATCAAC 59.794 42.308 13.57 0.00 0.00 3.18
911 944 2.722201 CCCTCTACCACGCCTCCAC 61.722 68.421 0.00 0.00 0.00 4.02
912 945 1.982395 CCTCTACCACGCCTCCACA 60.982 63.158 0.00 0.00 0.00 4.17
925 966 2.795329 CCTCCACACCAATAGCAAACT 58.205 47.619 0.00 0.00 0.00 2.66
928 969 3.561143 TCCACACCAATAGCAAACTTGT 58.439 40.909 0.00 0.00 0.00 3.16
935 976 5.003804 ACCAATAGCAAACTTGTAGTGGAG 58.996 41.667 17.48 0.00 35.50 3.86
1012 1059 0.801872 TTGACCGATGTTGCATTCCG 59.198 50.000 0.00 0.00 0.00 4.30
1016 1063 1.735571 ACCGATGTTGCATTCCGTTAC 59.264 47.619 0.00 0.00 0.00 2.50
1053 1105 2.364002 GGAAGAAGAAGAGGAGGATCGG 59.636 54.545 0.00 0.00 34.37 4.18
1065 1117 3.614399 GGATCGGCCTGTAATCCTG 57.386 57.895 0.00 0.00 36.76 3.86
1066 1118 0.603975 GGATCGGCCTGTAATCCTGC 60.604 60.000 0.00 0.00 36.76 4.85
1067 1119 0.394565 GATCGGCCTGTAATCCTGCT 59.605 55.000 0.00 0.00 0.00 4.24
1068 1120 0.394565 ATCGGCCTGTAATCCTGCTC 59.605 55.000 0.00 0.00 0.00 4.26
1069 1121 0.975556 TCGGCCTGTAATCCTGCTCA 60.976 55.000 0.00 0.00 0.00 4.26
1090 1142 2.659897 GCTGGGTGCGAGATAGCG 60.660 66.667 0.00 0.00 40.67 4.26
1233 1411 7.062322 TGTGCTTCCCTCAAATATAATCACAT 58.938 34.615 0.00 0.00 0.00 3.21
1544 1735 8.693625 ACATTCAAGGTAACCTATACTAGTGTC 58.306 37.037 5.39 0.00 31.13 3.67
1579 1789 5.429762 TCCTATATGCAGGGGATAGGATTTG 59.570 44.000 18.56 2.20 44.05 2.32
1584 1794 4.044308 TGCAGGGGATAGGATTTGAACTA 58.956 43.478 0.00 0.00 0.00 2.24
1588 1875 6.207614 GCAGGGGATAGGATTTGAACTATTTC 59.792 42.308 0.00 0.00 30.43 2.17
1608 1895 9.694520 CTATTTCGTAGTTGTTTCATCTTCATG 57.305 33.333 0.00 0.00 0.00 3.07
1612 1899 6.871492 TCGTAGTTGTTTCATCTTCATGCTAA 59.129 34.615 0.00 0.00 0.00 3.09
1636 1923 6.091076 TCAAATAATCAATGGAGGTTCCCT 57.909 37.500 0.00 0.00 35.03 4.20
1651 1941 9.640952 TGGAGGTTCCCTTTATCTTAAAATATG 57.359 33.333 0.00 0.00 35.03 1.78
1669 1961 1.904287 TGTATGGTTGACAGTTGGCC 58.096 50.000 0.00 0.00 0.00 5.36
1687 1992 2.757868 GGCCACATGTATTAGTTTGCCA 59.242 45.455 0.00 0.00 34.72 4.92
1695 2000 7.485913 CACATGTATTAGTTTGCCAATCAAGAC 59.514 37.037 0.00 0.00 35.84 3.01
1706 2011 4.641541 TGCCAATCAAGACGAATGATTCAT 59.358 37.500 5.95 0.00 43.72 2.57
1713 2018 7.008440 TCAAGACGAATGATTCATTAGCTTG 57.992 36.000 27.07 27.07 39.13 4.01
1848 2158 5.265989 TCCCAGGGAAAACATATTTACCAC 58.734 41.667 5.36 0.00 30.83 4.16
2174 2499 1.070289 GGGGCTAAGAACTACATCCGG 59.930 57.143 0.00 0.00 0.00 5.14
2192 2517 1.595093 GGTGTTCTGAAATGCCCCCG 61.595 60.000 0.00 0.00 0.00 5.73
2204 2529 0.034863 TGCCCCCGGAACAGTTTATC 60.035 55.000 0.73 0.00 0.00 1.75
2231 2562 4.074799 TGTAAGAGAAATCCCCTCTCCA 57.925 45.455 0.00 0.00 39.88 3.86
2234 2565 1.367848 AGAGAAATCCCCTCTCCAGGT 59.632 52.381 0.00 0.00 40.25 4.00
2235 2566 1.765904 GAGAAATCCCCTCTCCAGGTC 59.234 57.143 0.00 0.00 38.30 3.85
2236 2567 0.840617 GAAATCCCCTCTCCAGGTCC 59.159 60.000 0.00 0.00 38.30 4.46
2237 2568 0.423544 AAATCCCCTCTCCAGGTCCT 59.576 55.000 0.00 0.00 38.30 3.85
2238 2569 0.327000 AATCCCCTCTCCAGGTCCTG 60.327 60.000 12.40 12.40 38.30 3.86
2250 2659 4.824479 CCAGGTCCTGGCAAATAAAAAT 57.176 40.909 25.31 0.00 45.13 1.82
2252 2661 5.178061 CCAGGTCCTGGCAAATAAAAATTC 58.822 41.667 25.31 0.00 45.13 2.17
2253 2662 4.864247 CAGGTCCTGGCAAATAAAAATTCG 59.136 41.667 11.46 0.00 0.00 3.34
2327 2933 6.423302 CACTGCAAGCCATCTAGTATCTTTAG 59.577 42.308 0.00 0.00 37.60 1.85
2328 2934 5.300752 TGCAAGCCATCTAGTATCTTTAGC 58.699 41.667 0.00 0.00 0.00 3.09
2329 2935 4.693095 GCAAGCCATCTAGTATCTTTAGCC 59.307 45.833 0.00 0.00 0.00 3.93
2345 2959 2.134789 AGCCAGAGTTTAATGCCCTG 57.865 50.000 0.00 0.00 0.00 4.45
2397 3026 4.082463 ACGAAAAAGTTGCAGGAAAAGACA 60.082 37.500 0.00 0.00 0.00 3.41
2472 3110 1.602377 GCACTAAGGTGTGTGGACAAC 59.398 52.381 0.00 0.00 44.65 3.32
2499 3137 5.634859 CAGAAACAAAAGGCCATGTATCAAC 59.365 40.000 5.01 0.00 0.00 3.18
2508 3146 4.756642 AGGCCATGTATCAACGATATTGTG 59.243 41.667 5.01 0.00 0.00 3.33
2518 3156 5.729510 TCAACGATATTGTGGATGAACTGA 58.270 37.500 0.00 0.00 0.00 3.41
2532 3170 5.295540 GGATGAACTGAATCAACTAGAAGCC 59.704 44.000 0.00 0.00 32.06 4.35
2581 3219 4.129380 TGATGTGTCAAAAGACCTCACTG 58.871 43.478 0.00 0.00 0.00 3.66
2582 3220 2.288666 TGTGTCAAAAGACCTCACTGC 58.711 47.619 0.00 0.00 0.00 4.40
2583 3221 2.092968 TGTGTCAAAAGACCTCACTGCT 60.093 45.455 0.00 0.00 0.00 4.24
2594 3232 0.969149 CTCACTGCTGTCCAGGTACA 59.031 55.000 0.00 0.00 46.14 2.90
2629 3269 2.103042 GCATGCGTGTCACTCCTCC 61.103 63.158 0.00 0.00 0.00 4.30
2661 3301 6.716628 TCAGTATTTTGCAATCCTCTGTTTCT 59.283 34.615 0.00 0.00 0.00 2.52
2680 3320 4.098914 TCTACAGTTTTGGCCTGTCAAT 57.901 40.909 3.32 0.00 42.03 2.57
2744 3436 6.010219 CCAATTTACCTCTTCTTCTTTCCCA 58.990 40.000 0.00 0.00 0.00 4.37
2753 3445 2.440409 TCTTCTTTCCCATTGCAGAGC 58.560 47.619 0.00 0.00 0.00 4.09
2765 3457 2.665395 GCAGAGCAGCTGTGACACG 61.665 63.158 23.45 0.00 46.62 4.49
2806 3498 2.825836 CATGGAGCTGCGGTTCCC 60.826 66.667 24.11 9.20 41.37 3.97
2980 3672 2.358003 GCTGTCAGCGCAAGAGGT 60.358 61.111 11.47 0.00 43.02 3.85
2984 3676 3.939939 TCAGCGCAAGAGGTGGCA 61.940 61.111 11.47 0.00 39.81 4.92
3106 3842 1.678728 GGCGAATCAGGTGGTTGATGA 60.679 52.381 0.00 0.00 37.83 2.92
3226 3966 9.683069 AATTCAGATAAATGTTGAGTTGTTGTC 57.317 29.630 0.00 0.00 0.00 3.18
3265 4006 9.743057 TTGTTTTGAGGTCTGTTTAATTGTATG 57.257 29.630 0.00 0.00 0.00 2.39
3271 4012 9.349713 TGAGGTCTGTTTAATTGTATGTTCTTT 57.650 29.630 0.00 0.00 0.00 2.52
3297 4038 8.817100 TGATTATGTTGTCTTTGATTAGCTACG 58.183 33.333 0.00 0.00 0.00 3.51
3382 4148 1.677820 GGTGGGAGGTAACATGAACGG 60.678 57.143 0.00 0.00 41.41 4.44
3384 4150 1.087771 GGGAGGTAACATGAACGGCG 61.088 60.000 4.80 4.80 41.41 6.46
3385 4151 1.702491 GGAGGTAACATGAACGGCGC 61.702 60.000 6.90 0.00 41.41 6.53
3386 4152 0.739813 GAGGTAACATGAACGGCGCT 60.740 55.000 6.90 0.00 41.41 5.92
3387 4153 0.739813 AGGTAACATGAACGGCGCTC 60.740 55.000 6.90 4.64 41.41 5.03
3388 4154 0.739813 GGTAACATGAACGGCGCTCT 60.740 55.000 6.90 0.00 0.00 4.09
3389 4155 1.076332 GTAACATGAACGGCGCTCTT 58.924 50.000 6.90 0.00 0.00 2.85
3390 4156 1.075542 TAACATGAACGGCGCTCTTG 58.924 50.000 20.30 20.30 0.00 3.02
3391 4157 0.884704 AACATGAACGGCGCTCTTGT 60.885 50.000 21.43 21.43 33.84 3.16
3392 4158 0.884704 ACATGAACGGCGCTCTTGTT 60.885 50.000 21.43 7.49 29.53 2.83
3393 4159 0.238289 CATGAACGGCGCTCTTGTTT 59.762 50.000 15.50 0.00 0.00 2.83
3394 4160 0.517316 ATGAACGGCGCTCTTGTTTC 59.483 50.000 6.90 1.49 0.00 2.78
3395 4161 1.154654 GAACGGCGCTCTTGTTTCG 60.155 57.895 6.90 1.41 0.00 3.46
3396 4162 2.494504 GAACGGCGCTCTTGTTTCGG 62.495 60.000 6.90 0.00 0.00 4.30
3397 4163 3.041940 CGGCGCTCTTGTTTCGGT 61.042 61.111 7.64 0.00 0.00 4.69
3398 4164 2.861006 GGCGCTCTTGTTTCGGTC 59.139 61.111 7.64 0.00 0.00 4.79
3399 4165 1.959226 GGCGCTCTTGTTTCGGTCA 60.959 57.895 7.64 0.00 0.00 4.02
3400 4166 1.204312 GCGCTCTTGTTTCGGTCAC 59.796 57.895 0.00 0.00 0.00 3.67
3401 4167 1.495584 GCGCTCTTGTTTCGGTCACA 61.496 55.000 0.00 0.00 0.00 3.58
3402 4168 0.508641 CGCTCTTGTTTCGGTCACAG 59.491 55.000 0.00 0.00 0.00 3.66
3403 4169 1.865865 GCTCTTGTTTCGGTCACAGA 58.134 50.000 0.00 0.00 0.00 3.41
3404 4170 2.210116 GCTCTTGTTTCGGTCACAGAA 58.790 47.619 0.00 0.00 0.00 3.02
3405 4171 2.032808 GCTCTTGTTTCGGTCACAGAAC 60.033 50.000 0.00 0.00 0.00 3.01
3406 4172 3.194861 CTCTTGTTTCGGTCACAGAACA 58.805 45.455 0.00 0.00 0.00 3.18
3407 4173 2.933906 TCTTGTTTCGGTCACAGAACAC 59.066 45.455 0.00 0.00 0.00 3.32
3408 4174 2.684001 TGTTTCGGTCACAGAACACT 57.316 45.000 0.00 0.00 0.00 3.55
3409 4175 2.276201 TGTTTCGGTCACAGAACACTG 58.724 47.619 0.00 0.00 37.63 3.66
3410 4176 2.277084 GTTTCGGTCACAGAACACTGT 58.723 47.619 0.00 0.00 44.39 3.55
3411 4177 2.676342 GTTTCGGTCACAGAACACTGTT 59.324 45.455 0.00 0.00 42.09 3.16
3412 4178 1.934589 TCGGTCACAGAACACTGTTG 58.065 50.000 0.00 0.00 42.09 3.33
3413 4179 1.206132 TCGGTCACAGAACACTGTTGT 59.794 47.619 0.00 0.00 42.09 3.32
3415 4181 2.627945 GGTCACAGAACACTGTTGTGA 58.372 47.619 22.34 16.62 46.34 3.58
3417 4183 3.326836 TCACAGAACACTGTTGTGACA 57.673 42.857 22.34 7.96 44.39 3.58
3418 4184 3.000041 TCACAGAACACTGTTGTGACAC 59.000 45.455 22.34 0.00 44.39 3.67
3419 4185 1.999735 ACAGAACACTGTTGTGACACG 59.000 47.619 22.34 0.00 46.55 4.49
3420 4186 2.267426 CAGAACACTGTTGTGACACGA 58.733 47.619 12.66 0.00 46.55 4.35
3421 4187 2.670905 CAGAACACTGTTGTGACACGAA 59.329 45.455 12.66 0.00 46.55 3.85
3422 4188 3.309682 CAGAACACTGTTGTGACACGAAT 59.690 43.478 12.66 0.00 46.55 3.34
3423 4189 3.309682 AGAACACTGTTGTGACACGAATG 59.690 43.478 0.00 0.00 46.55 2.67
3424 4190 2.899976 ACACTGTTGTGACACGAATGA 58.100 42.857 0.00 0.00 46.55 2.57
3425 4191 3.466836 ACACTGTTGTGACACGAATGAT 58.533 40.909 0.00 0.00 46.55 2.45
3426 4192 3.494626 ACACTGTTGTGACACGAATGATC 59.505 43.478 0.00 0.00 46.55 2.92
3427 4193 3.742882 CACTGTTGTGACACGAATGATCT 59.257 43.478 0.00 0.00 46.55 2.75
3428 4194 3.990469 ACTGTTGTGACACGAATGATCTC 59.010 43.478 0.00 0.00 0.00 2.75
3429 4195 3.325870 TGTTGTGACACGAATGATCTCC 58.674 45.455 0.00 0.00 0.00 3.71
3430 4196 2.278026 TGTGACACGAATGATCTCCG 57.722 50.000 0.22 0.00 0.00 4.63
3431 4197 0.924090 GTGACACGAATGATCTCCGC 59.076 55.000 0.00 0.00 0.00 5.54
3432 4198 0.530288 TGACACGAATGATCTCCGCA 59.470 50.000 0.00 0.00 0.00 5.69
3433 4199 1.203928 GACACGAATGATCTCCGCAG 58.796 55.000 0.00 0.00 0.00 5.18
3465 4231 8.545229 AAAAGTTGTGACATGAATGAAAAACA 57.455 26.923 0.00 0.00 0.00 2.83
3466 4232 8.721019 AAAGTTGTGACATGAATGAAAAACAT 57.279 26.923 0.00 0.00 41.45 2.71
3467 4233 7.935338 AGTTGTGACATGAATGAAAAACATC 57.065 32.000 0.00 0.00 38.38 3.06
3468 4234 7.719483 AGTTGTGACATGAATGAAAAACATCT 58.281 30.769 0.00 0.00 38.38 2.90
3469 4235 7.864379 AGTTGTGACATGAATGAAAAACATCTC 59.136 33.333 0.00 0.00 38.38 2.75
3470 4236 7.274603 TGTGACATGAATGAAAAACATCTCA 57.725 32.000 0.00 0.00 38.38 3.27
3471 4237 7.140705 TGTGACATGAATGAAAAACATCTCAC 58.859 34.615 0.00 0.00 38.38 3.51
3472 4238 6.583806 GTGACATGAATGAAAAACATCTCACC 59.416 38.462 0.00 0.00 38.38 4.02
3473 4239 6.264970 TGACATGAATGAAAAACATCTCACCA 59.735 34.615 0.00 0.00 38.38 4.17
3474 4240 7.039574 TGACATGAATGAAAAACATCTCACCAT 60.040 33.333 0.00 0.00 38.38 3.55
3475 4241 7.318141 ACATGAATGAAAAACATCTCACCATC 58.682 34.615 0.00 0.00 38.38 3.51
3476 4242 7.177921 ACATGAATGAAAAACATCTCACCATCT 59.822 33.333 0.00 0.00 38.38 2.90
3477 4243 8.680001 CATGAATGAAAAACATCTCACCATCTA 58.320 33.333 0.00 0.00 38.38 1.98
3478 4244 8.044060 TGAATGAAAAACATCTCACCATCTAC 57.956 34.615 0.00 0.00 38.38 2.59
3479 4245 7.121168 TGAATGAAAAACATCTCACCATCTACC 59.879 37.037 0.00 0.00 38.38 3.18
3480 4246 4.935205 TGAAAAACATCTCACCATCTACCG 59.065 41.667 0.00 0.00 0.00 4.02
3481 4247 4.819105 AAAACATCTCACCATCTACCGA 57.181 40.909 0.00 0.00 0.00 4.69
3482 4248 3.802948 AACATCTCACCATCTACCGAC 57.197 47.619 0.00 0.00 0.00 4.79
3483 4249 1.676529 ACATCTCACCATCTACCGACG 59.323 52.381 0.00 0.00 0.00 5.12
3484 4250 1.001268 CATCTCACCATCTACCGACGG 60.001 57.143 13.61 13.61 0.00 4.79
3485 4251 1.065928 CTCACCATCTACCGACGGC 59.934 63.158 15.39 0.00 0.00 5.68
3486 4252 2.278596 CACCATCTACCGACGGCG 60.279 66.667 15.39 1.94 37.24 6.46
3487 4253 2.438975 ACCATCTACCGACGGCGA 60.439 61.111 15.16 11.51 40.82 5.54
3488 4254 2.025727 CCATCTACCGACGGCGAC 59.974 66.667 15.16 6.59 40.82 5.19
3489 4255 2.478890 CCATCTACCGACGGCGACT 61.479 63.158 15.16 0.00 40.82 4.18
3490 4256 1.432251 CATCTACCGACGGCGACTT 59.568 57.895 15.16 0.00 40.82 3.01
3491 4257 0.866061 CATCTACCGACGGCGACTTG 60.866 60.000 15.16 0.00 40.82 3.16
3492 4258 1.028330 ATCTACCGACGGCGACTTGA 61.028 55.000 15.16 4.97 40.82 3.02
3493 4259 1.513586 CTACCGACGGCGACTTGAC 60.514 63.158 15.16 0.00 40.82 3.18
3494 4260 2.862347 CTACCGACGGCGACTTGACC 62.862 65.000 15.16 0.00 40.82 4.02
3495 4261 4.052229 CCGACGGCGACTTGACCT 62.052 66.667 15.16 0.00 40.82 3.85
3496 4262 2.805353 CGACGGCGACTTGACCTG 60.805 66.667 16.62 0.00 40.82 4.00
3497 4263 2.649034 GACGGCGACTTGACCTGA 59.351 61.111 16.62 0.00 0.00 3.86
3498 4264 1.733399 GACGGCGACTTGACCTGAC 60.733 63.158 16.62 0.00 0.00 3.51
3499 4265 2.432628 CGGCGACTTGACCTGACC 60.433 66.667 0.00 0.00 0.00 4.02
3500 4266 2.432628 GGCGACTTGACCTGACCG 60.433 66.667 0.00 0.00 0.00 4.79
3501 4267 2.432628 GCGACTTGACCTGACCGG 60.433 66.667 0.00 0.00 39.35 5.28
3502 4268 2.432628 CGACTTGACCTGACCGGC 60.433 66.667 0.00 0.00 35.61 6.13
3503 4269 2.047179 GACTTGACCTGACCGGCC 60.047 66.667 0.00 0.00 35.61 6.13
3504 4270 2.847234 ACTTGACCTGACCGGCCA 60.847 61.111 0.00 0.00 35.61 5.36
3505 4271 2.046892 CTTGACCTGACCGGCCAG 60.047 66.667 11.38 11.38 35.61 4.85
3506 4272 4.329545 TTGACCTGACCGGCCAGC 62.330 66.667 13.04 0.00 35.61 4.85
3508 4274 4.767255 GACCTGACCGGCCAGCAG 62.767 72.222 13.04 9.56 35.61 4.24
3515 4281 4.767255 CCGGCCAGCAGGTCAGTC 62.767 72.222 2.24 0.00 40.51 3.51
3516 4282 3.699894 CGGCCAGCAGGTCAGTCT 61.700 66.667 2.24 0.00 40.51 3.24
3517 4283 2.267324 GGCCAGCAGGTCAGTCTC 59.733 66.667 0.00 0.00 40.10 3.36
3518 4284 2.267324 GCCAGCAGGTCAGTCTCC 59.733 66.667 0.00 0.00 37.19 3.71
3519 4285 2.575993 CCAGCAGGTCAGTCTCCG 59.424 66.667 0.00 0.00 0.00 4.63
3520 4286 2.279069 CCAGCAGGTCAGTCTCCGT 61.279 63.158 0.00 0.00 0.00 4.69
3521 4287 0.965866 CCAGCAGGTCAGTCTCCGTA 60.966 60.000 0.00 0.00 0.00 4.02
3522 4288 1.107114 CAGCAGGTCAGTCTCCGTAT 58.893 55.000 0.00 0.00 0.00 3.06
3523 4289 2.298610 CAGCAGGTCAGTCTCCGTATA 58.701 52.381 0.00 0.00 0.00 1.47
3524 4290 2.033550 CAGCAGGTCAGTCTCCGTATAC 59.966 54.545 0.00 0.00 0.00 1.47
3525 4291 1.337387 GCAGGTCAGTCTCCGTATACC 59.663 57.143 0.00 0.00 0.00 2.73
3526 4292 2.651455 CAGGTCAGTCTCCGTATACCA 58.349 52.381 0.00 0.00 0.00 3.25
3527 4293 3.021695 CAGGTCAGTCTCCGTATACCAA 58.978 50.000 0.00 0.00 0.00 3.67
3528 4294 3.022406 AGGTCAGTCTCCGTATACCAAC 58.978 50.000 0.00 0.00 0.00 3.77
3529 4295 2.223433 GGTCAGTCTCCGTATACCAACG 60.223 54.545 0.00 0.00 42.49 4.10
3530 4296 2.679837 GTCAGTCTCCGTATACCAACGA 59.320 50.000 0.00 0.00 45.68 3.85
3531 4297 3.127548 GTCAGTCTCCGTATACCAACGAA 59.872 47.826 0.00 0.00 45.68 3.85
3532 4298 3.758023 TCAGTCTCCGTATACCAACGAAA 59.242 43.478 0.00 0.00 45.68 3.46
3533 4299 4.218200 TCAGTCTCCGTATACCAACGAAAA 59.782 41.667 0.00 0.00 45.68 2.29
3534 4300 4.325472 CAGTCTCCGTATACCAACGAAAAC 59.675 45.833 0.00 0.00 45.68 2.43
3535 4301 4.219288 AGTCTCCGTATACCAACGAAAACT 59.781 41.667 0.00 0.00 45.68 2.66
3536 4302 4.325472 GTCTCCGTATACCAACGAAAACTG 59.675 45.833 0.00 0.00 45.68 3.16
3537 4303 2.995258 TCCGTATACCAACGAAAACTGC 59.005 45.455 0.00 0.00 45.68 4.40
3538 4304 2.094734 CCGTATACCAACGAAAACTGCC 59.905 50.000 0.00 0.00 45.68 4.85
3539 4305 2.094734 CGTATACCAACGAAAACTGCCC 59.905 50.000 0.00 0.00 45.68 5.36
3540 4306 2.579410 ATACCAACGAAAACTGCCCT 57.421 45.000 0.00 0.00 0.00 5.19
3541 4307 1.600023 TACCAACGAAAACTGCCCTG 58.400 50.000 0.00 0.00 0.00 4.45
3542 4308 1.007387 CCAACGAAAACTGCCCTGC 60.007 57.895 0.00 0.00 0.00 4.85
3543 4309 1.455383 CCAACGAAAACTGCCCTGCT 61.455 55.000 0.00 0.00 0.00 4.24
3544 4310 0.040067 CAACGAAAACTGCCCTGCTC 60.040 55.000 0.00 0.00 0.00 4.26
3545 4311 0.465460 AACGAAAACTGCCCTGCTCA 60.465 50.000 0.00 0.00 0.00 4.26
3546 4312 0.250901 ACGAAAACTGCCCTGCTCAT 60.251 50.000 0.00 0.00 0.00 2.90
3547 4313 0.883833 CGAAAACTGCCCTGCTCATT 59.116 50.000 0.00 0.00 0.00 2.57
3548 4314 1.401931 CGAAAACTGCCCTGCTCATTG 60.402 52.381 0.00 0.00 0.00 2.82
3549 4315 0.971386 AAAACTGCCCTGCTCATTGG 59.029 50.000 0.00 0.00 0.00 3.16
3550 4316 0.112995 AAACTGCCCTGCTCATTGGA 59.887 50.000 0.00 0.00 0.00 3.53
3551 4317 0.333993 AACTGCCCTGCTCATTGGAT 59.666 50.000 0.00 0.00 0.00 3.41
3552 4318 0.333993 ACTGCCCTGCTCATTGGATT 59.666 50.000 0.00 0.00 0.00 3.01
3553 4319 0.744874 CTGCCCTGCTCATTGGATTG 59.255 55.000 0.00 0.00 0.00 2.67
3554 4320 0.685131 TGCCCTGCTCATTGGATTGG 60.685 55.000 0.00 0.00 0.00 3.16
3555 4321 0.396139 GCCCTGCTCATTGGATTGGA 60.396 55.000 0.00 0.00 0.00 3.53
3556 4322 1.756690 GCCCTGCTCATTGGATTGGAT 60.757 52.381 0.00 0.00 0.00 3.41
3557 4323 2.674420 CCCTGCTCATTGGATTGGATT 58.326 47.619 0.00 0.00 0.00 3.01
3558 4324 2.364324 CCCTGCTCATTGGATTGGATTG 59.636 50.000 0.00 0.00 0.00 2.67
3559 4325 2.364324 CCTGCTCATTGGATTGGATTGG 59.636 50.000 0.00 0.00 0.00 3.16
3560 4326 3.293337 CTGCTCATTGGATTGGATTGGA 58.707 45.455 0.00 0.00 0.00 3.53
3561 4327 3.895656 CTGCTCATTGGATTGGATTGGAT 59.104 43.478 0.00 0.00 0.00 3.41
3562 4328 5.064314 TGCTCATTGGATTGGATTGGATA 57.936 39.130 0.00 0.00 0.00 2.59
3563 4329 5.074804 TGCTCATTGGATTGGATTGGATAG 58.925 41.667 0.00 0.00 0.00 2.08
3564 4330 4.461781 GCTCATTGGATTGGATTGGATAGG 59.538 45.833 0.00 0.00 0.00 2.57
3565 4331 5.749928 GCTCATTGGATTGGATTGGATAGGA 60.750 44.000 0.00 0.00 0.00 2.94
3566 4332 6.473429 TCATTGGATTGGATTGGATAGGAT 57.527 37.500 0.00 0.00 0.00 3.24
3567 4333 6.250711 TCATTGGATTGGATTGGATAGGATG 58.749 40.000 0.00 0.00 0.00 3.51
3568 4334 4.662966 TGGATTGGATTGGATAGGATGG 57.337 45.455 0.00 0.00 0.00 3.51
3569 4335 3.334581 TGGATTGGATTGGATAGGATGGG 59.665 47.826 0.00 0.00 0.00 4.00
3570 4336 2.978156 TTGGATTGGATAGGATGGGC 57.022 50.000 0.00 0.00 0.00 5.36
3571 4337 1.831835 TGGATTGGATAGGATGGGCA 58.168 50.000 0.00 0.00 0.00 5.36
3572 4338 1.425066 TGGATTGGATAGGATGGGCAC 59.575 52.381 0.00 0.00 0.00 5.01
3573 4339 1.707427 GGATTGGATAGGATGGGCACT 59.293 52.381 0.00 0.00 0.00 4.40
3574 4340 2.553904 GGATTGGATAGGATGGGCACTG 60.554 54.545 0.00 0.00 0.00 3.66
3575 4341 0.846015 TTGGATAGGATGGGCACTGG 59.154 55.000 0.00 0.00 0.00 4.00
3576 4342 0.030195 TGGATAGGATGGGCACTGGA 60.030 55.000 0.00 0.00 0.00 3.86
3577 4343 1.366319 GGATAGGATGGGCACTGGAT 58.634 55.000 0.00 0.00 0.00 3.41
3578 4344 1.004044 GGATAGGATGGGCACTGGATG 59.996 57.143 0.00 0.00 0.00 3.51
3579 4345 1.980765 GATAGGATGGGCACTGGATGA 59.019 52.381 0.00 0.00 0.00 2.92
3580 4346 1.427809 TAGGATGGGCACTGGATGAG 58.572 55.000 0.00 0.00 0.00 2.90
3581 4347 1.527844 GGATGGGCACTGGATGAGC 60.528 63.158 0.00 0.00 0.00 4.26
3582 4348 1.225426 GATGGGCACTGGATGAGCA 59.775 57.895 0.00 0.00 33.86 4.26
3583 4349 0.818445 GATGGGCACTGGATGAGCAG 60.818 60.000 0.00 0.00 33.86 4.24
3584 4350 2.827642 GGGCACTGGATGAGCAGC 60.828 66.667 0.00 0.00 33.86 5.25
3585 4351 2.271497 GGCACTGGATGAGCAGCT 59.729 61.111 0.00 0.00 33.86 4.24
3586 4352 1.524002 GGCACTGGATGAGCAGCTA 59.476 57.895 0.00 0.00 33.86 3.32
3587 4353 0.532417 GGCACTGGATGAGCAGCTAG 60.532 60.000 0.00 0.00 33.86 3.42
3588 4354 0.532417 GCACTGGATGAGCAGCTAGG 60.532 60.000 0.00 0.00 32.44 3.02
3589 4355 0.829333 CACTGGATGAGCAGCTAGGT 59.171 55.000 0.00 0.00 29.08 3.08
3590 4356 1.118838 ACTGGATGAGCAGCTAGGTC 58.881 55.000 0.00 7.99 44.96 3.85
3595 4361 2.202810 GAGCAGCTAGGTCACCGC 60.203 66.667 0.00 0.00 44.14 5.68
3596 4362 3.724914 GAGCAGCTAGGTCACCGCC 62.725 68.421 0.00 0.00 44.14 6.13
3598 4364 4.514577 CAGCTAGGTCACCGCCGG 62.515 72.222 0.00 0.00 0.00 6.13
3622 4388 3.892581 GGCATAAGGGCGCTGTGC 61.893 66.667 24.48 24.48 45.38 4.57
3668 4434 0.827368 GCCCTGGTTGGTTTTTGTGA 59.173 50.000 0.00 0.00 0.00 3.58
3669 4435 1.472552 GCCCTGGTTGGTTTTTGTGAC 60.473 52.381 0.00 0.00 0.00 3.67
3672 5873 3.118445 CCCTGGTTGGTTTTTGTGACATT 60.118 43.478 0.00 0.00 0.00 2.71
3724 5925 9.508642 TCAGTTCCATACATGTGTTTATTTACA 57.491 29.630 9.11 0.00 0.00 2.41
3731 5932 9.404348 CATACATGTGTTTATTTACAAAGCACA 57.596 29.630 9.11 7.73 35.70 4.57
3733 5934 8.709386 ACATGTGTTTATTTACAAAGCACAAA 57.291 26.923 0.00 0.00 35.31 2.83
3734 5935 8.816144 ACATGTGTTTATTTACAAAGCACAAAG 58.184 29.630 0.00 7.83 35.31 2.77
3735 5936 7.227992 TGTGTTTATTTACAAAGCACAAAGC 57.772 32.000 3.48 0.00 46.19 3.51
3781 5982 7.833285 AAGCAGGAGGAAAGTTTATTTACAA 57.167 32.000 0.00 0.00 0.00 2.41
3782 5983 7.833285 AGCAGGAGGAAAGTTTATTTACAAA 57.167 32.000 0.00 0.00 0.00 2.83
3783 5984 7.886338 AGCAGGAGGAAAGTTTATTTACAAAG 58.114 34.615 0.00 0.00 0.00 2.77
3784 5985 6.586463 GCAGGAGGAAAGTTTATTTACAAAGC 59.414 38.462 0.00 0.00 0.00 3.51
3785 5986 7.657336 CAGGAGGAAAGTTTATTTACAAAGCA 58.343 34.615 0.00 0.00 0.00 3.91
3786 5987 7.595130 CAGGAGGAAAGTTTATTTACAAAGCAC 59.405 37.037 0.00 0.00 0.00 4.40
3787 5988 7.286775 AGGAGGAAAGTTTATTTACAAAGCACA 59.713 33.333 0.00 0.00 0.00 4.57
3788 5989 7.923878 GGAGGAAAGTTTATTTACAAAGCACAA 59.076 33.333 0.00 0.00 0.00 3.33
3789 5990 9.308318 GAGGAAAGTTTATTTACAAAGCACAAA 57.692 29.630 0.00 0.00 0.00 2.83
3790 5991 9.313118 AGGAAAGTTTATTTACAAAGCACAAAG 57.687 29.630 0.00 0.00 0.00 2.77
3792 5993 7.477144 AAGTTTATTTACAAAGCACAAAGGC 57.523 32.000 0.00 0.00 0.00 4.35
3793 5994 6.578023 AGTTTATTTACAAAGCACAAAGGCA 58.422 32.000 0.00 0.00 35.83 4.75
3794 5995 6.478673 AGTTTATTTACAAAGCACAAAGGCAC 59.521 34.615 0.00 0.00 35.83 5.01
3795 5996 2.483583 TTACAAAGCACAAAGGCACG 57.516 45.000 0.00 0.00 35.83 5.34
3796 5997 1.384525 TACAAAGCACAAAGGCACGT 58.615 45.000 0.00 0.00 35.83 4.49
3797 5998 1.384525 ACAAAGCACAAAGGCACGTA 58.615 45.000 0.00 0.00 35.83 3.57
3798 5999 1.746220 ACAAAGCACAAAGGCACGTAA 59.254 42.857 0.00 0.00 35.83 3.18
3799 6000 2.360801 ACAAAGCACAAAGGCACGTAAT 59.639 40.909 0.00 0.00 35.83 1.89
3800 6001 2.979813 CAAAGCACAAAGGCACGTAATC 59.020 45.455 0.00 0.00 35.83 1.75
3803 6004 3.670625 AGCACAAAGGCACGTAATCTTA 58.329 40.909 0.00 0.00 35.83 2.10
3804 6005 3.684788 AGCACAAAGGCACGTAATCTTAG 59.315 43.478 0.00 0.00 35.83 2.18
3805 6006 3.682858 GCACAAAGGCACGTAATCTTAGA 59.317 43.478 0.00 0.00 0.00 2.10
3807 6008 5.618561 CACAAAGGCACGTAATCTTAGAAC 58.381 41.667 0.00 0.00 0.00 3.01
3808 6009 5.178623 CACAAAGGCACGTAATCTTAGAACA 59.821 40.000 0.00 0.00 0.00 3.18
3809 6010 5.178809 ACAAAGGCACGTAATCTTAGAACAC 59.821 40.000 0.00 0.00 0.00 3.32
3810 6011 4.803098 AGGCACGTAATCTTAGAACACT 57.197 40.909 0.00 0.00 0.00 3.55
3811 6012 5.148651 AGGCACGTAATCTTAGAACACTT 57.851 39.130 0.00 0.00 0.00 3.16
3812 6013 5.548406 AGGCACGTAATCTTAGAACACTTT 58.452 37.500 0.00 0.00 0.00 2.66
3814 6015 5.178809 GGCACGTAATCTTAGAACACTTTGT 59.821 40.000 0.00 0.00 0.00 2.83
3815 6016 6.366877 GGCACGTAATCTTAGAACACTTTGTA 59.633 38.462 0.00 0.00 0.00 2.41
3816 6017 7.064253 GGCACGTAATCTTAGAACACTTTGTAT 59.936 37.037 0.00 0.00 0.00 2.29
3817 6018 8.440833 GCACGTAATCTTAGAACACTTTGTATT 58.559 33.333 0.00 0.00 0.00 1.89
3818 6019 9.953825 CACGTAATCTTAGAACACTTTGTATTC 57.046 33.333 0.00 0.00 0.00 1.75
3819 6020 9.148104 ACGTAATCTTAGAACACTTTGTATTCC 57.852 33.333 0.00 0.00 0.00 3.01
3821 6022 9.148104 GTAATCTTAGAACACTTTGTATTCCGT 57.852 33.333 0.00 0.00 0.00 4.69
3823 6024 6.751157 TCTTAGAACACTTTGTATTCCGTGA 58.249 36.000 0.00 0.00 0.00 4.35
3826 6027 6.687081 AGAACACTTTGTATTCCGTGAAAA 57.313 33.333 0.00 0.00 0.00 2.29
3827 6028 6.725246 AGAACACTTTGTATTCCGTGAAAAG 58.275 36.000 0.00 0.00 34.70 2.27
3828 6029 4.855531 ACACTTTGTATTCCGTGAAAAGC 58.144 39.130 0.00 0.00 32.33 3.51
3829 6030 4.336993 ACACTTTGTATTCCGTGAAAAGCA 59.663 37.500 0.00 0.00 32.33 3.91
3830 6031 5.009610 ACACTTTGTATTCCGTGAAAAGCAT 59.990 36.000 0.00 0.00 32.33 3.79
3913 6221 1.677552 CCCTTGCTCGTTGTACCCT 59.322 57.895 0.00 0.00 0.00 4.34
3928 6236 2.053865 CCCTGCCGGCACAATGATT 61.054 57.895 29.03 0.00 0.00 2.57
3934 6242 1.434696 CGGCACAATGATTCCAGGC 59.565 57.895 0.00 0.00 0.00 4.85
3943 6251 3.267233 ATTCCAGGCTGGCCACCA 61.267 61.111 29.02 8.37 37.47 4.17
3961 6269 1.071385 CCAATGGCGAGAAGGCTAGAT 59.929 52.381 0.00 0.00 46.88 1.98
3964 6272 4.160439 CCAATGGCGAGAAGGCTAGATATA 59.840 45.833 0.00 0.00 46.88 0.86
3977 6285 4.098044 GGCTAGATATATCGCTGTTAGGCA 59.902 45.833 19.39 0.00 33.83 4.75
3988 6296 1.447140 GTTAGGCACCACGATCGCA 60.447 57.895 16.60 0.00 0.00 5.10
3994 6302 2.202932 ACCACGATCGCATCCAGC 60.203 61.111 16.60 0.00 40.87 4.85
4029 6337 2.960688 GCTTCTCCAGCCCTTCCGT 61.961 63.158 0.00 0.00 43.65 4.69
4032 6340 0.036306 TTCTCCAGCCCTTCCGTTTC 59.964 55.000 0.00 0.00 0.00 2.78
4067 6375 3.984749 GGATCGCGGCTCTCTCCC 61.985 72.222 6.13 0.00 0.00 4.30
4111 6419 2.499685 GCCGCGATAAGGTCAGGT 59.500 61.111 8.23 0.00 0.00 4.00
4114 6422 0.810031 CCGCGATAAGGTCAGGTTGG 60.810 60.000 8.23 0.00 0.00 3.77
4130 6438 3.903090 AGGTTGGCCAAAATCTTTCATCA 59.097 39.130 22.47 0.00 37.19 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
120 125 9.502091 GACGCTCCTCATCTATCTATCTATTAT 57.498 37.037 0.00 0.00 0.00 1.28
121 126 8.710239 AGACGCTCCTCATCTATCTATCTATTA 58.290 37.037 0.00 0.00 0.00 0.98
122 127 7.573710 AGACGCTCCTCATCTATCTATCTATT 58.426 38.462 0.00 0.00 0.00 1.73
129 134 2.790433 GGAGACGCTCCTCATCTATCT 58.210 52.381 15.90 0.00 46.41 1.98
146 168 2.010497 TCTTCGATCGTCAGAGTGGAG 58.990 52.381 15.94 1.34 0.00 3.86
155 177 5.867166 AGTTTGTACTACTCTTCGATCGTC 58.133 41.667 15.94 0.00 31.21 4.20
184 206 2.929398 CGGTTCAAAGCAAAATATGGGC 59.071 45.455 0.00 0.00 0.00 5.36
222 244 1.398832 CGGAGGAAACGCGTTTTAACC 60.399 52.381 35.06 30.85 32.11 2.85
244 266 0.888619 TGCTTTCCGTCGACATCTCT 59.111 50.000 17.16 0.00 0.00 3.10
295 317 0.898320 ACCTTGACCCTGATCTGTCG 59.102 55.000 0.00 0.00 34.18 4.35
296 318 1.902508 TGACCTTGACCCTGATCTGTC 59.097 52.381 0.00 0.00 0.00 3.51
304 329 1.366366 CGACGTTGACCTTGACCCT 59.634 57.895 0.00 0.00 0.00 4.34
439 464 1.221293 GATGGAGCAGCAGCAGAGT 59.779 57.895 3.17 0.00 45.49 3.24
467 492 0.687354 AGAGATGGTTGCTCGTTGGT 59.313 50.000 0.00 0.00 37.46 3.67
470 495 2.846371 GCAGAGATGGTTGCTCGTT 58.154 52.632 0.00 0.00 37.46 3.85
511 536 1.007038 CCGGGACAACGAACGAAGA 60.007 57.895 0.00 0.00 35.47 2.87
518 543 2.732016 CACTGACCGGGACAACGA 59.268 61.111 6.32 0.00 35.47 3.85
527 552 3.799753 GCATAGTGCCACTGACCG 58.200 61.111 7.83 0.00 37.42 4.79
551 576 0.674581 CTTGCCAGATGAAGCGACCA 60.675 55.000 0.00 0.00 0.00 4.02
552 577 1.372087 CCTTGCCAGATGAAGCGACC 61.372 60.000 0.00 0.00 0.00 4.79
553 578 0.391661 TCCTTGCCAGATGAAGCGAC 60.392 55.000 0.00 0.00 0.00 5.19
555 580 1.167851 TTTCCTTGCCAGATGAAGCG 58.832 50.000 0.00 0.00 0.00 4.68
592 624 8.914328 TTCACGTCATACGAATTACTAAATCA 57.086 30.769 6.44 0.00 46.05 2.57
608 640 3.576982 TCAGACCCTAAGTTTCACGTCAT 59.423 43.478 0.00 0.00 0.00 3.06
637 670 1.187087 ACGGAGGGAGTAGAAGCAAG 58.813 55.000 0.00 0.00 0.00 4.01
638 671 1.549170 GAACGGAGGGAGTAGAAGCAA 59.451 52.381 0.00 0.00 0.00 3.91
639 672 1.183549 GAACGGAGGGAGTAGAAGCA 58.816 55.000 0.00 0.00 0.00 3.91
640 673 0.100861 CGAACGGAGGGAGTAGAAGC 59.899 60.000 0.00 0.00 0.00 3.86
641 674 0.739561 CCGAACGGAGGGAGTAGAAG 59.260 60.000 7.53 0.00 37.50 2.85
642 675 0.329261 TCCGAACGGAGGGAGTAGAA 59.671 55.000 12.04 0.00 39.76 2.10
643 676 0.329261 TTCCGAACGGAGGGAGTAGA 59.671 55.000 15.34 0.00 46.06 2.59
644 677 1.400737 ATTCCGAACGGAGGGAGTAG 58.599 55.000 15.34 0.00 46.06 2.57
645 678 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
646 679 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
647 680 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
648 681 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
649 682 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
650 683 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
651 684 3.581755 TGACAAGTAATTCCGAACGGAG 58.418 45.455 15.34 5.60 46.06 4.63
652 685 3.663995 TGACAAGTAATTCCGAACGGA 57.336 42.857 12.04 12.04 43.52 4.69
653 686 5.345702 TCTATGACAAGTAATTCCGAACGG 58.654 41.667 6.94 6.94 0.00 4.44
654 687 6.880822 TTCTATGACAAGTAATTCCGAACG 57.119 37.500 0.00 0.00 0.00 3.95
655 688 8.122952 CCATTTCTATGACAAGTAATTCCGAAC 58.877 37.037 0.00 0.00 33.37 3.95
656 689 8.044309 TCCATTTCTATGACAAGTAATTCCGAA 58.956 33.333 0.00 0.00 33.37 4.30
657 690 7.561251 TCCATTTCTATGACAAGTAATTCCGA 58.439 34.615 0.00 0.00 33.37 4.55
658 691 7.786178 TCCATTTCTATGACAAGTAATTCCG 57.214 36.000 0.00 0.00 33.37 4.30
659 692 9.125026 ACATCCATTTCTATGACAAGTAATTCC 57.875 33.333 0.00 0.00 33.37 3.01
699 732 9.967346 CTCGAAAATGGATGTATCTAGAACTAA 57.033 33.333 0.00 0.00 0.00 2.24
700 733 9.350951 TCTCGAAAATGGATGTATCTAGAACTA 57.649 33.333 0.00 0.00 0.00 2.24
701 734 8.138712 GTCTCGAAAATGGATGTATCTAGAACT 58.861 37.037 0.00 0.00 0.00 3.01
702 735 7.921214 TGTCTCGAAAATGGATGTATCTAGAAC 59.079 37.037 0.00 0.00 0.00 3.01
703 736 8.007405 TGTCTCGAAAATGGATGTATCTAGAA 57.993 34.615 0.00 0.00 0.00 2.10
704 737 7.582667 TGTCTCGAAAATGGATGTATCTAGA 57.417 36.000 0.00 0.00 0.00 2.43
705 738 7.923344 ACTTGTCTCGAAAATGGATGTATCTAG 59.077 37.037 0.00 0.00 0.00 2.43
706 739 7.782049 ACTTGTCTCGAAAATGGATGTATCTA 58.218 34.615 0.00 0.00 0.00 1.98
707 740 6.644347 ACTTGTCTCGAAAATGGATGTATCT 58.356 36.000 0.00 0.00 0.00 1.98
708 741 6.910536 ACTTGTCTCGAAAATGGATGTATC 57.089 37.500 0.00 0.00 0.00 2.24
709 742 7.556844 ACTACTTGTCTCGAAAATGGATGTAT 58.443 34.615 0.00 0.00 0.00 2.29
710 743 6.931838 ACTACTTGTCTCGAAAATGGATGTA 58.068 36.000 0.00 0.00 0.00 2.29
711 744 5.794894 ACTACTTGTCTCGAAAATGGATGT 58.205 37.500 0.00 0.00 0.00 3.06
712 745 6.183360 GGAACTACTTGTCTCGAAAATGGATG 60.183 42.308 0.00 0.00 0.00 3.51
713 746 5.875359 GGAACTACTTGTCTCGAAAATGGAT 59.125 40.000 0.00 0.00 0.00 3.41
714 747 5.235516 GGAACTACTTGTCTCGAAAATGGA 58.764 41.667 0.00 0.00 0.00 3.41
715 748 4.091509 CGGAACTACTTGTCTCGAAAATGG 59.908 45.833 0.00 0.00 0.00 3.16
716 749 4.921515 TCGGAACTACTTGTCTCGAAAATG 59.078 41.667 0.00 0.00 32.89 2.32
717 750 5.130292 TCGGAACTACTTGTCTCGAAAAT 57.870 39.130 0.00 0.00 32.89 1.82
718 751 4.572985 TCGGAACTACTTGTCTCGAAAA 57.427 40.909 0.00 0.00 32.89 2.29
719 752 4.293415 GTTCGGAACTACTTGTCTCGAAA 58.707 43.478 13.49 0.00 41.13 3.46
720 753 3.607775 CGTTCGGAACTACTTGTCTCGAA 60.608 47.826 17.94 0.00 39.10 3.71
721 754 2.096069 CGTTCGGAACTACTTGTCTCGA 60.096 50.000 17.94 0.00 33.56 4.04
722 755 2.240040 CGTTCGGAACTACTTGTCTCG 58.760 52.381 17.94 0.00 0.00 4.04
723 756 2.227388 TCCGTTCGGAACTACTTGTCTC 59.773 50.000 17.94 0.00 0.00 3.36
724 757 2.228343 CTCCGTTCGGAACTACTTGTCT 59.772 50.000 17.94 0.00 33.41 3.41
725 758 2.593257 CTCCGTTCGGAACTACTTGTC 58.407 52.381 17.94 0.00 33.41 3.18
726 759 1.271656 CCTCCGTTCGGAACTACTTGT 59.728 52.381 17.94 0.00 33.41 3.16
727 760 1.403780 CCCTCCGTTCGGAACTACTTG 60.404 57.143 17.94 2.92 33.41 3.16
728 761 0.893447 CCCTCCGTTCGGAACTACTT 59.107 55.000 17.94 0.00 33.41 2.24
729 762 0.038744 TCCCTCCGTTCGGAACTACT 59.961 55.000 17.94 0.00 33.41 2.57
730 763 0.455005 CTCCCTCCGTTCGGAACTAC 59.545 60.000 17.94 0.00 33.41 2.73
731 764 0.038744 ACTCCCTCCGTTCGGAACTA 59.961 55.000 17.94 6.05 33.41 2.24
732 765 0.038744 TACTCCCTCCGTTCGGAACT 59.961 55.000 17.94 0.33 33.41 3.01
733 766 0.455005 CTACTCCCTCCGTTCGGAAC 59.545 60.000 14.79 10.83 33.41 3.62
734 767 0.038744 ACTACTCCCTCCGTTCGGAA 59.961 55.000 14.79 0.04 33.41 4.30
735 768 0.911769 TACTACTCCCTCCGTTCGGA 59.088 55.000 13.34 13.34 0.00 4.55
736 769 1.755179 TTACTACTCCCTCCGTTCGG 58.245 55.000 4.74 4.74 0.00 4.30
737 770 3.212685 AGATTACTACTCCCTCCGTTCG 58.787 50.000 0.00 0.00 0.00 3.95
738 771 5.375773 ACTAGATTACTACTCCCTCCGTTC 58.624 45.833 0.00 0.00 0.00 3.95
739 772 5.104193 TGACTAGATTACTACTCCCTCCGTT 60.104 44.000 0.00 0.00 0.00 4.44
740 773 4.411540 TGACTAGATTACTACTCCCTCCGT 59.588 45.833 0.00 0.00 0.00 4.69
741 774 4.970711 TGACTAGATTACTACTCCCTCCG 58.029 47.826 0.00 0.00 0.00 4.63
742 775 7.726738 AGATTTGACTAGATTACTACTCCCTCC 59.273 40.741 0.00 0.00 0.00 4.30
743 776 8.700439 AGATTTGACTAGATTACTACTCCCTC 57.300 38.462 0.00 0.00 0.00 4.30
744 777 8.507761 AGAGATTTGACTAGATTACTACTCCCT 58.492 37.037 0.00 0.00 0.00 4.20
745 778 8.700439 AGAGATTTGACTAGATTACTACTCCC 57.300 38.462 0.00 0.00 0.00 4.30
746 779 9.569122 AGAGAGATTTGACTAGATTACTACTCC 57.431 37.037 0.00 0.00 0.00 3.85
748 781 9.569122 GGAGAGAGATTTGACTAGATTACTACT 57.431 37.037 0.00 0.00 0.00 2.57
749 782 9.344772 TGGAGAGAGATTTGACTAGATTACTAC 57.655 37.037 0.00 0.00 0.00 2.73
750 783 9.344772 GTGGAGAGAGATTTGACTAGATTACTA 57.655 37.037 0.00 0.00 0.00 1.82
751 784 7.286775 GGTGGAGAGAGATTTGACTAGATTACT 59.713 40.741 0.00 0.00 0.00 2.24
768 801 0.748367 CAGATCCGACGGTGGAGAGA 60.748 60.000 14.79 0.00 42.45 3.10
787 820 0.813821 GCTGGACCTTTGGATCAAGC 59.186 55.000 0.00 0.00 0.00 4.01
788 821 2.089980 CTGCTGGACCTTTGGATCAAG 58.910 52.381 0.00 0.00 0.00 3.02
852 885 0.615331 TTGCTGCGGGAGAAGAAGAT 59.385 50.000 0.00 0.00 37.93 2.40
871 904 5.310857 GGGTTGATCCTAGGAATATGAAGGT 59.689 44.000 17.30 0.00 36.25 3.50
876 909 6.155393 GGTAGAGGGTTGATCCTAGGAATATG 59.845 46.154 17.30 0.00 37.25 1.78
885 918 1.486211 CGTGGTAGAGGGTTGATCCT 58.514 55.000 0.00 0.00 40.43 3.24
893 926 2.363795 TGGAGGCGTGGTAGAGGG 60.364 66.667 0.00 0.00 0.00 4.30
911 944 4.759693 TCCACTACAAGTTTGCTATTGGTG 59.240 41.667 0.00 0.00 0.00 4.17
912 945 4.980573 TCCACTACAAGTTTGCTATTGGT 58.019 39.130 0.00 0.00 0.00 3.67
925 966 5.780282 CCCATCCATATAGTCTCCACTACAA 59.220 44.000 0.00 0.00 37.97 2.41
928 969 5.878484 TCCCATCCATATAGTCTCCACTA 57.122 43.478 0.00 0.00 39.54 2.74
996 1043 1.735571 GTAACGGAATGCAACATCGGT 59.264 47.619 0.00 0.00 0.00 4.69
997 1044 2.006888 AGTAACGGAATGCAACATCGG 58.993 47.619 0.00 0.00 0.00 4.18
999 1046 7.247728 TGAAAATAGTAACGGAATGCAACATC 58.752 34.615 0.00 0.00 0.00 3.06
1053 1105 0.543749 AGGTGAGCAGGATTACAGGC 59.456 55.000 0.00 0.00 0.00 4.85
1056 1108 1.065926 CAGCAGGTGAGCAGGATTACA 60.066 52.381 0.00 0.00 36.85 2.41
1090 1142 1.064654 GAGTTCGAAATCCATGCTGCC 59.935 52.381 14.47 0.00 0.00 4.85
1233 1411 4.681074 TCAGTTGTCATGTGGTACAGAA 57.319 40.909 0.00 0.00 41.80 3.02
1514 1698 9.314321 CTAGTATAGGTTACCTTGAATGTGTTG 57.686 37.037 10.01 0.00 34.22 3.33
1557 1748 6.566079 TCAAATCCTATCCCCTGCATATAG 57.434 41.667 0.00 0.00 0.00 1.31
1584 1794 7.023575 GCATGAAGATGAAACAACTACGAAAT 58.976 34.615 0.00 0.00 0.00 2.17
1588 1875 5.536554 AGCATGAAGATGAAACAACTACG 57.463 39.130 0.00 0.00 0.00 3.51
1605 1892 8.582437 ACCTCCATTGATTATTTGATTAGCATG 58.418 33.333 0.00 0.00 0.00 4.06
1608 1895 8.084684 GGAACCTCCATTGATTATTTGATTAGC 58.915 37.037 0.00 0.00 36.28 3.09
1651 1941 1.539827 GTGGCCAACTGTCAACCATAC 59.460 52.381 7.24 0.00 31.99 2.39
1663 1955 4.173256 GCAAACTAATACATGTGGCCAAC 58.827 43.478 7.24 2.03 0.00 3.77
1669 1961 7.485913 GTCTTGATTGGCAAACTAATACATGTG 59.514 37.037 9.11 0.00 35.74 3.21
1687 1992 7.798596 AGCTAATGAATCATTCGTCTTGATT 57.201 32.000 12.23 9.04 44.40 2.57
1848 2158 8.753497 AAATATTTCCAGGCTTTAAGTCTAGG 57.247 34.615 0.00 3.90 0.00 3.02
1980 2290 6.436738 AATGTCTTAGAGCATGATCCATCT 57.563 37.500 7.49 0.00 0.00 2.90
2174 2499 1.595093 CCGGGGGCATTTCAGAACAC 61.595 60.000 0.00 0.00 0.00 3.32
2192 2517 5.938125 TCTTACAAGCTGGATAAACTGTTCC 59.062 40.000 0.00 0.00 0.00 3.62
2204 2529 3.054065 AGGGGATTTCTCTTACAAGCTGG 60.054 47.826 0.00 0.00 0.00 4.85
2231 2562 4.526650 ACGAATTTTTATTTGCCAGGACCT 59.473 37.500 0.00 0.00 0.00 3.85
2234 2565 6.754193 AGAAACGAATTTTTATTTGCCAGGA 58.246 32.000 0.00 0.00 0.00 3.86
2235 2566 6.868339 AGAGAAACGAATTTTTATTTGCCAGG 59.132 34.615 0.00 0.00 0.00 4.45
2236 2567 7.382218 ACAGAGAAACGAATTTTTATTTGCCAG 59.618 33.333 0.00 0.00 0.00 4.85
2237 2568 7.206687 ACAGAGAAACGAATTTTTATTTGCCA 58.793 30.769 0.00 0.00 0.00 4.92
2238 2569 7.637709 ACAGAGAAACGAATTTTTATTTGCC 57.362 32.000 0.00 0.00 0.00 4.52
2239 2570 9.356929 CAAACAGAGAAACGAATTTTTATTTGC 57.643 29.630 0.00 0.00 0.00 3.68
2243 2574 9.673454 GGTACAAACAGAGAAACGAATTTTTAT 57.327 29.630 0.00 0.00 0.00 1.40
2327 2933 2.128771 TCAGGGCATTAAACTCTGGC 57.871 50.000 8.45 1.04 37.22 4.85
2328 2934 5.413499 CAAAATCAGGGCATTAAACTCTGG 58.587 41.667 8.45 0.00 0.00 3.86
2329 2935 4.866486 GCAAAATCAGGGCATTAAACTCTG 59.134 41.667 2.95 2.95 0.00 3.35
2345 2959 2.229543 TCACTGACCTGCATGCAAAATC 59.770 45.455 22.88 18.37 0.00 2.17
2472 3110 2.034558 ACATGGCCTTTTGTTTCTGTCG 59.965 45.455 3.32 0.00 0.00 4.35
2499 3137 6.849588 TGATTCAGTTCATCCACAATATCG 57.150 37.500 0.00 0.00 0.00 2.92
2508 3146 5.295540 GGCTTCTAGTTGATTCAGTTCATCC 59.704 44.000 0.00 0.00 0.00 3.51
2518 3156 6.349694 GCTTTAAGCTTGGCTTCTAGTTGATT 60.350 38.462 9.86 0.00 46.77 2.57
2532 3170 5.091431 GCTAGTGACATTGCTTTAAGCTTG 58.909 41.667 18.20 16.48 42.97 4.01
2581 3219 1.204941 AGTCGAATGTACCTGGACAGC 59.795 52.381 0.00 0.00 31.51 4.40
2582 3220 3.695060 AGTAGTCGAATGTACCTGGACAG 59.305 47.826 0.00 0.00 31.51 3.51
2583 3221 3.442625 CAGTAGTCGAATGTACCTGGACA 59.557 47.826 0.00 0.64 0.00 4.02
2594 3232 1.320344 TGCCCTCGCAGTAGTCGAAT 61.320 55.000 0.00 0.00 41.12 3.34
2620 3260 2.317040 ACTGAAGAAACGGAGGAGTGA 58.683 47.619 0.00 0.00 0.00 3.41
2629 3269 6.381801 AGGATTGCAAAATACTGAAGAAACG 58.618 36.000 1.71 0.00 0.00 3.60
2721 3413 7.709149 ATGGGAAAGAAGAAGAGGTAAATTG 57.291 36.000 0.00 0.00 0.00 2.32
2744 3436 0.250597 TGTCACAGCTGCTCTGCAAT 60.251 50.000 15.27 0.00 46.76 3.56
2753 3445 3.433274 ACATAATGTTCGTGTCACAGCTG 59.567 43.478 13.48 13.48 0.00 4.24
2806 3498 2.682269 GCCTCCTTCCTTAGCTCAAAGG 60.682 54.545 8.77 8.77 46.35 3.11
2980 3672 3.195683 GCATGTATTGCGGTGCCA 58.804 55.556 0.00 0.00 42.54 4.92
2989 3681 1.202521 TGTCCTCGCATCGCATGTATT 60.203 47.619 0.00 0.00 0.00 1.89
3059 3795 6.368791 TGGTCGTCTTGAACAATTCTTGATAG 59.631 38.462 0.00 0.00 42.71 2.08
3081 3817 1.077501 CCACCTGATTCGCCATGGT 60.078 57.895 14.67 0.00 0.00 3.55
3106 3842 2.185350 CGATCGGCAGCTTCACCT 59.815 61.111 7.38 0.00 0.00 4.00
3226 3966 4.432712 CTCAAAACAACACCTTTTCCCAG 58.567 43.478 0.00 0.00 0.00 4.45
3271 4012 8.817100 CGTAGCTAATCAAAGACAACATAATCA 58.183 33.333 0.00 0.00 0.00 2.57
3366 4132 1.702491 GCGCCGTTCATGTTACCTCC 61.702 60.000 0.00 0.00 0.00 4.30
3382 4148 1.204312 GTGACCGAAACAAGAGCGC 59.796 57.895 0.00 0.00 0.00 5.92
3384 4150 1.865865 TCTGTGACCGAAACAAGAGC 58.134 50.000 0.00 0.00 0.00 4.09
3385 4151 3.001330 GTGTTCTGTGACCGAAACAAGAG 59.999 47.826 0.00 0.00 0.00 2.85
3386 4152 2.933906 GTGTTCTGTGACCGAAACAAGA 59.066 45.455 0.00 0.00 0.00 3.02
3387 4153 2.936498 AGTGTTCTGTGACCGAAACAAG 59.064 45.455 0.00 0.00 0.00 3.16
3388 4154 2.675844 CAGTGTTCTGTGACCGAAACAA 59.324 45.455 0.00 0.00 36.97 2.83
3389 4155 2.276201 CAGTGTTCTGTGACCGAAACA 58.724 47.619 0.00 0.00 36.97 2.83
3400 4166 2.267426 TCGTGTCACAACAGTGTTCTG 58.733 47.619 5.27 5.12 46.18 3.02
3401 4167 2.665649 TCGTGTCACAACAGTGTTCT 57.334 45.000 5.27 0.00 35.07 3.01
3402 4168 3.308595 TCATTCGTGTCACAACAGTGTTC 59.691 43.478 5.27 0.00 35.07 3.18
3403 4169 3.266636 TCATTCGTGTCACAACAGTGTT 58.733 40.909 1.64 1.64 35.07 3.32
3404 4170 2.899976 TCATTCGTGTCACAACAGTGT 58.100 42.857 3.42 0.00 39.07 3.55
3405 4171 3.742882 AGATCATTCGTGTCACAACAGTG 59.257 43.478 3.42 0.00 35.64 3.66
3406 4172 3.990469 GAGATCATTCGTGTCACAACAGT 59.010 43.478 3.42 0.00 35.64 3.55
3407 4173 3.369147 GGAGATCATTCGTGTCACAACAG 59.631 47.826 3.42 0.00 35.64 3.16
3408 4174 3.325870 GGAGATCATTCGTGTCACAACA 58.674 45.455 3.42 0.00 0.00 3.33
3409 4175 2.345641 CGGAGATCATTCGTGTCACAAC 59.654 50.000 3.42 0.00 0.00 3.32
3410 4176 2.606108 CGGAGATCATTCGTGTCACAA 58.394 47.619 3.42 0.00 0.00 3.33
3411 4177 1.735700 GCGGAGATCATTCGTGTCACA 60.736 52.381 3.42 0.00 0.00 3.58
3412 4178 0.924090 GCGGAGATCATTCGTGTCAC 59.076 55.000 0.00 0.00 0.00 3.67
3413 4179 0.530288 TGCGGAGATCATTCGTGTCA 59.470 50.000 0.00 0.00 0.00 3.58
3414 4180 1.203928 CTGCGGAGATCATTCGTGTC 58.796 55.000 0.00 0.00 0.00 3.67
3415 4181 0.179100 CCTGCGGAGATCATTCGTGT 60.179 55.000 5.10 0.00 0.00 4.49
3416 4182 0.103026 TCCTGCGGAGATCATTCGTG 59.897 55.000 5.10 0.00 0.00 4.35
3417 4183 0.824109 TTCCTGCGGAGATCATTCGT 59.176 50.000 5.10 0.00 31.21 3.85
3418 4184 1.939974 TTTCCTGCGGAGATCATTCG 58.060 50.000 5.10 0.00 31.21 3.34
3439 4205 8.997323 TGTTTTTCATTCATGTCACAACTTTTT 58.003 25.926 0.00 0.00 0.00 1.94
3440 4206 8.545229 TGTTTTTCATTCATGTCACAACTTTT 57.455 26.923 0.00 0.00 0.00 2.27
3441 4207 8.721019 ATGTTTTTCATTCATGTCACAACTTT 57.279 26.923 0.00 0.00 32.08 2.66
3442 4208 8.199449 AGATGTTTTTCATTCATGTCACAACTT 58.801 29.630 0.00 0.00 36.83 2.66
3443 4209 7.719483 AGATGTTTTTCATTCATGTCACAACT 58.281 30.769 0.00 0.00 36.83 3.16
3444 4210 7.648908 TGAGATGTTTTTCATTCATGTCACAAC 59.351 33.333 0.00 0.00 37.10 3.32
3445 4211 7.714703 TGAGATGTTTTTCATTCATGTCACAA 58.285 30.769 0.00 0.00 37.10 3.33
3446 4212 7.274603 TGAGATGTTTTTCATTCATGTCACA 57.725 32.000 0.00 0.00 37.10 3.58
3447 4213 7.558435 GTGAGATGTTTTTCATTCATGTCAC 57.442 36.000 15.04 15.04 46.82 3.67
3448 4214 6.264970 TGGTGAGATGTTTTTCATTCATGTCA 59.735 34.615 0.00 0.00 38.75 3.58
3449 4215 6.680810 TGGTGAGATGTTTTTCATTCATGTC 58.319 36.000 0.00 0.00 36.83 3.06
3450 4216 6.653526 TGGTGAGATGTTTTTCATTCATGT 57.346 33.333 0.00 0.00 36.83 3.21
3451 4217 7.544622 AGATGGTGAGATGTTTTTCATTCATG 58.455 34.615 0.00 0.00 36.83 3.07
3452 4218 7.713734 AGATGGTGAGATGTTTTTCATTCAT 57.286 32.000 0.00 0.00 36.83 2.57
3453 4219 7.121168 GGTAGATGGTGAGATGTTTTTCATTCA 59.879 37.037 0.00 0.00 36.83 2.57
3454 4220 7.475840 GGTAGATGGTGAGATGTTTTTCATTC 58.524 38.462 0.00 0.00 36.83 2.67
3455 4221 6.094048 CGGTAGATGGTGAGATGTTTTTCATT 59.906 38.462 0.00 0.00 36.83 2.57
3456 4222 5.586243 CGGTAGATGGTGAGATGTTTTTCAT 59.414 40.000 0.00 0.00 39.77 2.57
3457 4223 4.935205 CGGTAGATGGTGAGATGTTTTTCA 59.065 41.667 0.00 0.00 0.00 2.69
3458 4224 5.063564 GTCGGTAGATGGTGAGATGTTTTTC 59.936 44.000 0.00 0.00 0.00 2.29
3459 4225 4.935808 GTCGGTAGATGGTGAGATGTTTTT 59.064 41.667 0.00 0.00 0.00 1.94
3460 4226 4.504858 GTCGGTAGATGGTGAGATGTTTT 58.495 43.478 0.00 0.00 0.00 2.43
3461 4227 3.428999 CGTCGGTAGATGGTGAGATGTTT 60.429 47.826 0.00 0.00 0.00 2.83
3462 4228 2.099263 CGTCGGTAGATGGTGAGATGTT 59.901 50.000 0.00 0.00 0.00 2.71
3463 4229 1.676529 CGTCGGTAGATGGTGAGATGT 59.323 52.381 0.00 0.00 0.00 3.06
3464 4230 1.001268 CCGTCGGTAGATGGTGAGATG 60.001 57.143 2.08 0.00 46.15 2.90
3465 4231 1.319541 CCGTCGGTAGATGGTGAGAT 58.680 55.000 2.08 0.00 46.15 2.75
3466 4232 2.789842 CCGTCGGTAGATGGTGAGA 58.210 57.895 2.08 0.00 46.15 3.27
3472 4238 0.866061 CAAGTCGCCGTCGGTAGATG 60.866 60.000 13.94 5.74 36.13 2.90
3473 4239 1.028330 TCAAGTCGCCGTCGGTAGAT 61.028 55.000 13.94 0.00 36.13 1.98
3474 4240 1.672030 TCAAGTCGCCGTCGGTAGA 60.672 57.895 13.94 10.21 36.13 2.59
3475 4241 1.513586 GTCAAGTCGCCGTCGGTAG 60.514 63.158 13.94 7.84 36.13 3.18
3476 4242 2.562912 GTCAAGTCGCCGTCGGTA 59.437 61.111 13.94 0.00 36.13 4.02
3477 4243 4.353437 GGTCAAGTCGCCGTCGGT 62.353 66.667 13.94 0.00 36.13 4.69
3478 4244 4.052229 AGGTCAAGTCGCCGTCGG 62.052 66.667 6.99 6.99 36.13 4.79
3479 4245 2.805353 CAGGTCAAGTCGCCGTCG 60.805 66.667 0.00 0.00 0.00 5.12
3480 4246 1.733399 GTCAGGTCAAGTCGCCGTC 60.733 63.158 0.00 0.00 0.00 4.79
3481 4247 2.338984 GTCAGGTCAAGTCGCCGT 59.661 61.111 0.00 0.00 0.00 5.68
3482 4248 2.432628 GGTCAGGTCAAGTCGCCG 60.433 66.667 0.00 0.00 0.00 6.46
3483 4249 2.432628 CGGTCAGGTCAAGTCGCC 60.433 66.667 0.00 0.00 0.00 5.54
3484 4250 2.432628 CCGGTCAGGTCAAGTCGC 60.433 66.667 0.00 0.00 34.51 5.19
3485 4251 2.432628 GCCGGTCAGGTCAAGTCG 60.433 66.667 1.90 0.00 43.70 4.18
3486 4252 2.047179 GGCCGGTCAGGTCAAGTC 60.047 66.667 0.00 0.00 46.14 3.01
3494 4260 4.767255 GACCTGCTGGCCGGTCAG 62.767 72.222 31.91 31.91 46.98 3.51
3498 4264 4.767255 GACTGACCTGCTGGCCGG 62.767 72.222 7.41 7.41 36.63 6.13
3499 4265 3.655810 GAGACTGACCTGCTGGCCG 62.656 68.421 9.95 0.78 36.63 6.13
3500 4266 2.267324 GAGACTGACCTGCTGGCC 59.733 66.667 9.95 0.00 36.63 5.36
3501 4267 2.267324 GGAGACTGACCTGCTGGC 59.733 66.667 9.95 3.40 36.63 4.85
3502 4268 0.965866 TACGGAGACTGACCTGCTGG 60.966 60.000 8.29 8.29 39.83 4.85
3503 4269 1.107114 ATACGGAGACTGACCTGCTG 58.893 55.000 0.00 0.00 0.00 4.41
3504 4270 2.299521 GTATACGGAGACTGACCTGCT 58.700 52.381 0.00 0.00 0.00 4.24
3505 4271 1.337387 GGTATACGGAGACTGACCTGC 59.663 57.143 0.00 0.00 0.00 4.85
3506 4272 2.651455 TGGTATACGGAGACTGACCTG 58.349 52.381 0.00 0.00 0.00 4.00
3507 4273 3.022406 GTTGGTATACGGAGACTGACCT 58.978 50.000 0.00 0.00 0.00 3.85
3508 4274 2.223433 CGTTGGTATACGGAGACTGACC 60.223 54.545 0.00 0.00 37.86 4.02
3509 4275 2.679837 TCGTTGGTATACGGAGACTGAC 59.320 50.000 0.00 0.00 41.67 3.51
3510 4276 2.989909 TCGTTGGTATACGGAGACTGA 58.010 47.619 0.00 0.00 41.67 3.41
3511 4277 3.770263 TTCGTTGGTATACGGAGACTG 57.230 47.619 0.00 0.00 41.67 3.51
3512 4278 4.219288 AGTTTTCGTTGGTATACGGAGACT 59.781 41.667 0.00 0.00 39.02 3.24
3513 4279 4.325472 CAGTTTTCGTTGGTATACGGAGAC 59.675 45.833 0.00 0.00 41.67 3.36
3514 4280 4.487948 CAGTTTTCGTTGGTATACGGAGA 58.512 43.478 0.00 0.00 41.67 3.71
3515 4281 3.061697 GCAGTTTTCGTTGGTATACGGAG 59.938 47.826 0.00 0.00 41.67 4.63
3516 4282 2.995258 GCAGTTTTCGTTGGTATACGGA 59.005 45.455 0.00 0.00 41.67 4.69
3517 4283 2.094734 GGCAGTTTTCGTTGGTATACGG 59.905 50.000 0.00 0.00 41.67 4.02
3518 4284 2.094734 GGGCAGTTTTCGTTGGTATACG 59.905 50.000 0.00 0.00 42.68 3.06
3519 4285 3.126343 CAGGGCAGTTTTCGTTGGTATAC 59.874 47.826 0.00 0.00 0.00 1.47
3520 4286 3.340034 CAGGGCAGTTTTCGTTGGTATA 58.660 45.455 0.00 0.00 0.00 1.47
3521 4287 2.159382 CAGGGCAGTTTTCGTTGGTAT 58.841 47.619 0.00 0.00 0.00 2.73
3522 4288 1.600023 CAGGGCAGTTTTCGTTGGTA 58.400 50.000 0.00 0.00 0.00 3.25
3523 4289 1.734388 GCAGGGCAGTTTTCGTTGGT 61.734 55.000 0.00 0.00 0.00 3.67
3524 4290 1.007387 GCAGGGCAGTTTTCGTTGG 60.007 57.895 0.00 0.00 0.00 3.77
3525 4291 0.040067 GAGCAGGGCAGTTTTCGTTG 60.040 55.000 0.00 0.00 0.00 4.10
3526 4292 0.465460 TGAGCAGGGCAGTTTTCGTT 60.465 50.000 0.00 0.00 0.00 3.85
3527 4293 0.250901 ATGAGCAGGGCAGTTTTCGT 60.251 50.000 0.00 0.00 0.00 3.85
3528 4294 0.883833 AATGAGCAGGGCAGTTTTCG 59.116 50.000 0.00 0.00 0.00 3.46
3529 4295 1.067354 CCAATGAGCAGGGCAGTTTTC 60.067 52.381 0.00 0.00 0.00 2.29
3530 4296 0.971386 CCAATGAGCAGGGCAGTTTT 59.029 50.000 0.00 0.00 0.00 2.43
3531 4297 0.112995 TCCAATGAGCAGGGCAGTTT 59.887 50.000 0.00 0.00 0.00 2.66
3532 4298 0.333993 ATCCAATGAGCAGGGCAGTT 59.666 50.000 0.00 0.00 0.00 3.16
3533 4299 0.333993 AATCCAATGAGCAGGGCAGT 59.666 50.000 0.00 0.00 0.00 4.40
3534 4300 0.744874 CAATCCAATGAGCAGGGCAG 59.255 55.000 0.00 0.00 0.00 4.85
3535 4301 0.685131 CCAATCCAATGAGCAGGGCA 60.685 55.000 0.00 0.00 0.00 5.36
3536 4302 0.396139 TCCAATCCAATGAGCAGGGC 60.396 55.000 0.00 0.00 0.00 5.19
3537 4303 2.364324 CAATCCAATCCAATGAGCAGGG 59.636 50.000 0.00 0.00 0.00 4.45
3538 4304 2.364324 CCAATCCAATCCAATGAGCAGG 59.636 50.000 0.00 0.00 0.00 4.85
3539 4305 3.293337 TCCAATCCAATCCAATGAGCAG 58.707 45.455 0.00 0.00 0.00 4.24
3540 4306 3.385314 TCCAATCCAATCCAATGAGCA 57.615 42.857 0.00 0.00 0.00 4.26
3541 4307 4.461781 CCTATCCAATCCAATCCAATGAGC 59.538 45.833 0.00 0.00 0.00 4.26
3542 4308 5.884322 TCCTATCCAATCCAATCCAATGAG 58.116 41.667 0.00 0.00 0.00 2.90
3543 4309 5.928394 TCCTATCCAATCCAATCCAATGA 57.072 39.130 0.00 0.00 0.00 2.57
3544 4310 5.421056 CCATCCTATCCAATCCAATCCAATG 59.579 44.000 0.00 0.00 0.00 2.82
3545 4311 5.519622 CCCATCCTATCCAATCCAATCCAAT 60.520 44.000 0.00 0.00 0.00 3.16
3546 4312 4.202706 CCCATCCTATCCAATCCAATCCAA 60.203 45.833 0.00 0.00 0.00 3.53
3547 4313 3.334581 CCCATCCTATCCAATCCAATCCA 59.665 47.826 0.00 0.00 0.00 3.41
3548 4314 3.879321 GCCCATCCTATCCAATCCAATCC 60.879 52.174 0.00 0.00 0.00 3.01
3549 4315 3.245371 TGCCCATCCTATCCAATCCAATC 60.245 47.826 0.00 0.00 0.00 2.67
3550 4316 2.723563 TGCCCATCCTATCCAATCCAAT 59.276 45.455 0.00 0.00 0.00 3.16
3551 4317 2.142756 TGCCCATCCTATCCAATCCAA 58.857 47.619 0.00 0.00 0.00 3.53
3552 4318 1.425066 GTGCCCATCCTATCCAATCCA 59.575 52.381 0.00 0.00 0.00 3.41
3553 4319 1.707427 AGTGCCCATCCTATCCAATCC 59.293 52.381 0.00 0.00 0.00 3.01
3554 4320 2.553904 CCAGTGCCCATCCTATCCAATC 60.554 54.545 0.00 0.00 0.00 2.67
3555 4321 1.426598 CCAGTGCCCATCCTATCCAAT 59.573 52.381 0.00 0.00 0.00 3.16
3556 4322 0.846015 CCAGTGCCCATCCTATCCAA 59.154 55.000 0.00 0.00 0.00 3.53
3557 4323 0.030195 TCCAGTGCCCATCCTATCCA 60.030 55.000 0.00 0.00 0.00 3.41
3558 4324 1.004044 CATCCAGTGCCCATCCTATCC 59.996 57.143 0.00 0.00 0.00 2.59
3559 4325 1.980765 TCATCCAGTGCCCATCCTATC 59.019 52.381 0.00 0.00 0.00 2.08
3560 4326 1.983691 CTCATCCAGTGCCCATCCTAT 59.016 52.381 0.00 0.00 0.00 2.57
3561 4327 1.427809 CTCATCCAGTGCCCATCCTA 58.572 55.000 0.00 0.00 0.00 2.94
3562 4328 1.992519 GCTCATCCAGTGCCCATCCT 61.993 60.000 0.00 0.00 0.00 3.24
3563 4329 1.527844 GCTCATCCAGTGCCCATCC 60.528 63.158 0.00 0.00 0.00 3.51
3564 4330 0.818445 CTGCTCATCCAGTGCCCATC 60.818 60.000 0.00 0.00 35.92 3.51
3565 4331 1.226542 CTGCTCATCCAGTGCCCAT 59.773 57.895 0.00 0.00 35.92 4.00
3566 4332 2.672908 CTGCTCATCCAGTGCCCA 59.327 61.111 0.00 0.00 35.92 5.36
3567 4333 1.976132 TAGCTGCTCATCCAGTGCCC 61.976 60.000 4.91 0.00 35.92 5.36
3568 4334 0.532417 CTAGCTGCTCATCCAGTGCC 60.532 60.000 4.91 0.00 35.92 5.01
3569 4335 0.532417 CCTAGCTGCTCATCCAGTGC 60.532 60.000 4.91 0.00 35.28 4.40
3570 4336 0.829333 ACCTAGCTGCTCATCCAGTG 59.171 55.000 4.91 0.00 35.28 3.66
3571 4337 1.118838 GACCTAGCTGCTCATCCAGT 58.881 55.000 4.91 0.00 35.28 4.00
3572 4338 1.117994 TGACCTAGCTGCTCATCCAG 58.882 55.000 4.91 0.00 35.93 3.86
3573 4339 0.826715 GTGACCTAGCTGCTCATCCA 59.173 55.000 4.91 0.00 0.00 3.41
3574 4340 0.105778 GGTGACCTAGCTGCTCATCC 59.894 60.000 4.91 0.00 0.00 3.51
3575 4341 0.249238 CGGTGACCTAGCTGCTCATC 60.249 60.000 4.91 2.97 0.00 2.92
3576 4342 1.819229 CGGTGACCTAGCTGCTCAT 59.181 57.895 4.91 0.00 0.00 2.90
3577 4343 3.006756 GCGGTGACCTAGCTGCTCA 62.007 63.158 4.91 0.00 0.00 4.26
3578 4344 2.202810 GCGGTGACCTAGCTGCTC 60.203 66.667 4.91 0.00 0.00 4.26
3579 4345 3.775654 GGCGGTGACCTAGCTGCT 61.776 66.667 7.57 7.57 0.00 4.24
3581 4347 4.514577 CCGGCGGTGACCTAGCTG 62.515 72.222 19.97 1.29 37.04 4.24
3604 4370 3.576356 CACAGCGCCCTTATGCCG 61.576 66.667 2.29 0.00 0.00 5.69
3605 4371 3.892581 GCACAGCGCCCTTATGCC 61.893 66.667 2.29 0.00 32.94 4.40
3710 5911 7.493971 TGCTTTGTGCTTTGTAAATAAACACAT 59.506 29.630 0.00 0.00 43.37 3.21
3712 5913 7.116819 GTGCTTTGTGCTTTGTAAATAAACAC 58.883 34.615 0.00 0.00 43.37 3.32
3718 5919 5.358922 ACATGTGCTTTGTGCTTTGTAAAT 58.641 33.333 0.00 0.00 43.37 1.40
3721 5922 5.703978 ATACATGTGCTTTGTGCTTTGTA 57.296 34.783 9.11 0.00 43.37 2.41
3723 5924 4.376615 GCAATACATGTGCTTTGTGCTTTG 60.377 41.667 9.11 0.00 43.37 2.77
3724 5925 3.742369 GCAATACATGTGCTTTGTGCTTT 59.258 39.130 9.11 0.00 43.37 3.51
3725 5926 3.319755 GCAATACATGTGCTTTGTGCTT 58.680 40.909 9.11 0.00 43.37 3.91
3755 5956 8.927675 TGTAAATAAACTTTCCTCCTGCTTTA 57.072 30.769 0.00 0.00 0.00 1.85
3756 5957 7.833285 TGTAAATAAACTTTCCTCCTGCTTT 57.167 32.000 0.00 0.00 0.00 3.51
3757 5958 7.833285 TTGTAAATAAACTTTCCTCCTGCTT 57.167 32.000 0.00 0.00 0.00 3.91
3758 5959 7.523873 GCTTTGTAAATAAACTTTCCTCCTGCT 60.524 37.037 0.00 0.00 0.00 4.24
3759 5960 6.586463 GCTTTGTAAATAAACTTTCCTCCTGC 59.414 38.462 0.00 0.00 0.00 4.85
3760 5961 7.595130 GTGCTTTGTAAATAAACTTTCCTCCTG 59.405 37.037 0.00 0.00 0.00 3.86
3761 5962 7.286775 TGTGCTTTGTAAATAAACTTTCCTCCT 59.713 33.333 0.00 0.00 0.00 3.69
3763 5964 8.865590 TTGTGCTTTGTAAATAAACTTTCCTC 57.134 30.769 0.00 0.00 0.00 3.71
3764 5965 9.313118 CTTTGTGCTTTGTAAATAAACTTTCCT 57.687 29.630 0.00 0.00 0.00 3.36
3766 5967 8.061857 GCCTTTGTGCTTTGTAAATAAACTTTC 58.938 33.333 0.00 0.00 0.00 2.62
3767 5968 7.550906 TGCCTTTGTGCTTTGTAAATAAACTTT 59.449 29.630 0.00 0.00 0.00 2.66
3768 5969 7.011016 GTGCCTTTGTGCTTTGTAAATAAACTT 59.989 33.333 0.00 0.00 0.00 2.66
3769 5970 6.478673 GTGCCTTTGTGCTTTGTAAATAAACT 59.521 34.615 0.00 0.00 0.00 2.66
3770 5971 6.561350 CGTGCCTTTGTGCTTTGTAAATAAAC 60.561 38.462 0.00 0.00 0.00 2.01
3771 5972 5.460419 CGTGCCTTTGTGCTTTGTAAATAAA 59.540 36.000 0.00 0.00 0.00 1.40
3772 5973 4.979197 CGTGCCTTTGTGCTTTGTAAATAA 59.021 37.500 0.00 0.00 0.00 1.40
3773 5974 4.036971 ACGTGCCTTTGTGCTTTGTAAATA 59.963 37.500 0.00 0.00 0.00 1.40
3775 5976 2.164624 ACGTGCCTTTGTGCTTTGTAAA 59.835 40.909 0.00 0.00 0.00 2.01
3777 5978 1.384525 ACGTGCCTTTGTGCTTTGTA 58.615 45.000 0.00 0.00 0.00 2.41
3781 5982 2.504367 AGATTACGTGCCTTTGTGCTT 58.496 42.857 0.00 0.00 0.00 3.91
3782 5983 2.185004 AGATTACGTGCCTTTGTGCT 57.815 45.000 0.00 0.00 0.00 4.40
3783 5984 2.989422 AAGATTACGTGCCTTTGTGC 57.011 45.000 0.00 0.00 0.00 4.57
3784 5985 5.178623 TGTTCTAAGATTACGTGCCTTTGTG 59.821 40.000 0.00 0.00 0.00 3.33
3785 5986 5.178809 GTGTTCTAAGATTACGTGCCTTTGT 59.821 40.000 0.00 0.00 0.00 2.83
3786 5987 5.408604 AGTGTTCTAAGATTACGTGCCTTTG 59.591 40.000 0.00 0.16 0.00 2.77
3787 5988 5.548406 AGTGTTCTAAGATTACGTGCCTTT 58.452 37.500 0.00 0.00 0.00 3.11
3788 5989 5.148651 AGTGTTCTAAGATTACGTGCCTT 57.851 39.130 0.00 1.07 0.00 4.35
3789 5990 4.803098 AGTGTTCTAAGATTACGTGCCT 57.197 40.909 0.00 0.00 0.00 4.75
3790 5991 5.178809 ACAAAGTGTTCTAAGATTACGTGCC 59.821 40.000 0.00 0.00 0.00 5.01
3792 5993 9.953825 GAATACAAAGTGTTCTAAGATTACGTG 57.046 33.333 0.00 0.00 32.31 4.49
3793 5994 9.148104 GGAATACAAAGTGTTCTAAGATTACGT 57.852 33.333 0.00 0.00 34.77 3.57
3794 5995 8.318876 CGGAATACAAAGTGTTCTAAGATTACG 58.681 37.037 6.60 0.00 34.77 3.18
3795 5996 9.148104 ACGGAATACAAAGTGTTCTAAGATTAC 57.852 33.333 6.60 0.00 34.77 1.89
3796 5997 9.146984 CACGGAATACAAAGTGTTCTAAGATTA 57.853 33.333 6.60 0.00 34.77 1.75
3797 5998 7.876068 TCACGGAATACAAAGTGTTCTAAGATT 59.124 33.333 6.60 0.00 34.77 2.40
3798 5999 7.383687 TCACGGAATACAAAGTGTTCTAAGAT 58.616 34.615 6.60 0.00 34.77 2.40
3799 6000 6.751157 TCACGGAATACAAAGTGTTCTAAGA 58.249 36.000 6.60 1.03 34.77 2.10
3800 6001 7.416154 TTCACGGAATACAAAGTGTTCTAAG 57.584 36.000 6.60 2.71 34.77 2.18
3803 6004 6.687081 TTTTCACGGAATACAAAGTGTTCT 57.313 33.333 6.60 0.00 34.77 3.01
3804 6005 5.398416 GCTTTTCACGGAATACAAAGTGTTC 59.602 40.000 0.00 0.00 36.16 3.18
3805 6006 5.163602 TGCTTTTCACGGAATACAAAGTGTT 60.164 36.000 0.00 0.00 36.16 3.32
3807 6008 4.854399 TGCTTTTCACGGAATACAAAGTG 58.146 39.130 0.00 0.00 36.06 3.16
3808 6009 5.705609 ATGCTTTTCACGGAATACAAAGT 57.294 34.783 0.00 0.00 0.00 2.66
3809 6010 5.732647 CGTATGCTTTTCACGGAATACAAAG 59.267 40.000 0.00 0.00 32.19 2.77
3810 6011 5.623335 CGTATGCTTTTCACGGAATACAAA 58.377 37.500 0.00 0.00 32.19 2.83
3811 6012 4.436317 GCGTATGCTTTTCACGGAATACAA 60.436 41.667 0.00 0.00 38.39 2.41
3812 6013 3.062909 GCGTATGCTTTTCACGGAATACA 59.937 43.478 0.00 0.00 38.39 2.29
3814 6015 2.610374 GGCGTATGCTTTTCACGGAATA 59.390 45.455 6.92 0.00 42.25 1.75
3815 6016 1.400494 GGCGTATGCTTTTCACGGAAT 59.600 47.619 6.92 0.00 42.25 3.01
3816 6017 0.800012 GGCGTATGCTTTTCACGGAA 59.200 50.000 6.92 0.00 42.25 4.30
3817 6018 0.320858 TGGCGTATGCTTTTCACGGA 60.321 50.000 6.92 0.00 42.25 4.69
3818 6019 0.732571 ATGGCGTATGCTTTTCACGG 59.267 50.000 6.92 0.00 42.25 4.94
3819 6020 1.665679 AGATGGCGTATGCTTTTCACG 59.334 47.619 6.92 0.00 42.25 4.35
3821 6022 1.933181 CGAGATGGCGTATGCTTTTCA 59.067 47.619 6.92 0.00 42.25 2.69
3823 6024 2.309528 TCGAGATGGCGTATGCTTTT 57.690 45.000 6.92 0.00 42.25 2.27
3826 6027 0.961753 TGATCGAGATGGCGTATGCT 59.038 50.000 6.92 0.00 42.25 3.79
3827 6028 1.344458 CTGATCGAGATGGCGTATGC 58.656 55.000 0.00 0.00 41.71 3.14
3828 6029 1.344458 GCTGATCGAGATGGCGTATG 58.656 55.000 0.00 0.00 0.00 2.39
3829 6030 0.244994 GGCTGATCGAGATGGCGTAT 59.755 55.000 0.00 0.00 0.00 3.06
3830 6031 0.823769 AGGCTGATCGAGATGGCGTA 60.824 55.000 0.00 0.00 0.00 4.42
3913 6221 1.303970 TGGAATCATTGTGCCGGCA 60.304 52.632 29.03 29.03 0.00 5.69
3928 6236 3.267233 ATTGGTGGCCAGCCTGGA 61.267 61.111 31.12 15.20 40.96 3.86
3943 6251 5.221145 CGATATATCTAGCCTTCTCGCCATT 60.221 44.000 10.93 0.00 0.00 3.16
3977 6285 2.202932 GCTGGATGCGATCGTGGT 60.203 61.111 17.81 2.70 0.00 4.16
3994 6302 0.252479 AGCTGATGAAGGAGCACCAG 59.748 55.000 2.07 0.00 37.70 4.00
4024 6332 0.762418 TGAAGGAGCTGGAAACGGAA 59.238 50.000 0.00 0.00 39.98 4.30
4026 6334 1.301677 GCTGAAGGAGCTGGAAACGG 61.302 60.000 0.00 0.00 45.21 4.44
4049 6357 3.219928 GGAGAGAGCCGCGATCCA 61.220 66.667 8.23 0.00 0.00 3.41
4111 6419 3.579586 AGCTGATGAAAGATTTTGGCCAA 59.420 39.130 16.05 16.05 0.00 4.52
4114 6422 3.446516 AGGAGCTGATGAAAGATTTTGGC 59.553 43.478 0.00 0.00 0.00 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.