Multiple sequence alignment - TraesCS2B01G036100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G036100 chr2B 100.000 2876 0 0 1 2876 17201168 17204043 0.000000e+00 5312
1 TraesCS2B01G036100 chr2B 98.352 546 9 0 1496 2041 16969436 16968891 0.000000e+00 959
2 TraesCS2B01G036100 chr2B 96.791 561 16 2 2037 2597 16968833 16968275 0.000000e+00 935
3 TraesCS2B01G036100 chr2B 97.732 441 9 1 973 1412 16969892 16969452 0.000000e+00 758
4 TraesCS2B01G036100 chr2B 96.714 426 14 0 1 426 17192321 17192746 0.000000e+00 710
5 TraesCS2B01G036100 chr2B 88.514 592 59 7 1434 2020 17030589 17030002 0.000000e+00 708
6 TraesCS2B01G036100 chr2B 89.781 548 54 2 427 973 67546949 67547495 0.000000e+00 701
7 TraesCS2B01G036100 chr2B 87.778 450 48 7 1502 1946 17091792 17091345 1.180000e-143 520
8 TraesCS2B01G036100 chr2B 87.273 440 52 3 1438 1876 17171801 17172237 1.540000e-137 499
9 TraesCS2B01G036100 chr2B 82.463 268 35 9 2138 2394 140745488 140745222 1.040000e-54 224
10 TraesCS2B01G036100 chr2B 80.952 315 31 13 2104 2394 566618239 566617930 3.730000e-54 222
11 TraesCS2B01G036100 chr2B 82.464 211 37 0 1123 1333 17529609 17529819 4.890000e-43 185
12 TraesCS2B01G036100 chr2B 76.720 378 53 16 977 1341 17434947 17434592 8.190000e-41 178
13 TraesCS2B01G036100 chr2D 90.708 1087 71 10 973 2041 11168411 11167337 0.000000e+00 1421
14 TraesCS2B01G036100 chr2D 95.346 838 34 4 2040 2876 11131250 11130417 0.000000e+00 1327
15 TraesCS2B01G036100 chr2D 92.453 848 34 11 2030 2876 11167285 11166467 0.000000e+00 1184
16 TraesCS2B01G036100 chr2D 93.906 640 24 3 1402 2041 11131935 11131311 0.000000e+00 952
17 TraesCS2B01G036100 chr2D 84.825 659 85 12 1391 2041 26354440 26353789 0.000000e+00 649
18 TraesCS2B01G036100 chr2D 81.638 403 40 12 973 1341 26364923 26364521 1.290000e-78 303
19 TraesCS2B01G036100 chr2D 81.279 219 41 0 1123 1341 11391366 11391584 8.190000e-41 178
20 TraesCS2B01G036100 chr2D 85.083 181 17 7 2706 2876 26353444 26353264 2.950000e-40 176
21 TraesCS2B01G036100 chrUn 93.787 676 32 6 2037 2709 12509553 12508885 0.000000e+00 1007
22 TraesCS2B01G036100 chrUn 96.244 426 16 0 1 426 77633786 77634211 0.000000e+00 699
23 TraesCS2B01G036100 chrUn 89.888 534 50 1 1508 2041 12510140 12509611 0.000000e+00 684
24 TraesCS2B01G036100 chrUn 88.377 499 53 5 1508 2002 313026651 313027148 1.910000e-166 595
25 TraesCS2B01G036100 chrUn 90.212 378 26 9 973 1346 12511090 12510720 1.550000e-132 483
26 TraesCS2B01G036100 chrUn 89.323 384 24 6 973 1340 313026001 313026383 1.560000e-127 466
27 TraesCS2B01G036100 chr1B 92.460 557 37 4 427 982 113813661 113814213 0.000000e+00 791
28 TraesCS2B01G036100 chr1B 96.714 426 14 0 1 426 518359395 518359820 0.000000e+00 710
29 TraesCS2B01G036100 chr1B 96.462 424 15 0 1 424 518366417 518366840 0.000000e+00 701
30 TraesCS2B01G036100 chr5B 90.710 549 49 2 427 974 540697777 540698324 0.000000e+00 730
31 TraesCS2B01G036100 chr5B 96.744 430 14 0 1 430 207643025 207643454 0.000000e+00 717
32 TraesCS2B01G036100 chr5B 96.536 433 14 1 1 432 10080505 10080073 0.000000e+00 715
33 TraesCS2B01G036100 chr5B 96.253 427 16 0 1 427 452617806 452618232 0.000000e+00 701
34 TraesCS2B01G036100 chr5B 76.687 326 44 19 2101 2401 130453934 130453616 4.960000e-33 152
35 TraesCS2B01G036100 chr6D 90.528 549 50 2 427 974 78337502 78338049 0.000000e+00 725
36 TraesCS2B01G036100 chr6D 90.528 549 50 2 427 974 82651253 82650706 0.000000e+00 725
37 TraesCS2B01G036100 chr6D 89.981 539 47 3 436 973 335040059 335039527 0.000000e+00 689
38 TraesCS2B01G036100 chr7B 90.528 549 47 3 427 974 609746495 609745951 0.000000e+00 721
39 TraesCS2B01G036100 chr7B 96.744 430 13 1 1 430 469788620 469789048 0.000000e+00 715
40 TraesCS2B01G036100 chr7B 96.479 426 15 0 1 426 469781639 469782064 0.000000e+00 704
41 TraesCS2B01G036100 chr2A 89.982 549 53 2 427 974 468491767 468492314 0.000000e+00 708
42 TraesCS2B01G036100 chr2A 83.408 669 92 15 1387 2041 28675377 28674714 1.140000e-168 603
43 TraesCS2B01G036100 chr2A 83.377 385 42 15 973 1346 28675925 28675552 1.280000e-88 337
44 TraesCS2B01G036100 chr2A 86.740 181 14 7 2706 2876 28674421 28674241 2.920000e-45 193
45 TraesCS2B01G036100 chr3B 89.435 549 56 2 427 974 18390221 18390768 0.000000e+00 691
46 TraesCS2B01G036100 chr3D 84.422 398 37 8 973 1346 478539044 478538648 4.530000e-98 368
47 TraesCS2B01G036100 chr4D 81.787 291 36 13 2099 2377 414346546 414346261 8.020000e-56 228
48 TraesCS2B01G036100 chr5D 82.143 280 34 12 2110 2377 413078847 413079122 2.880000e-55 226
49 TraesCS2B01G036100 chr4A 81.164 292 37 14 2100 2378 463545726 463545440 4.820000e-53 219
50 TraesCS2B01G036100 chr4A 76.730 318 46 16 2101 2394 629142185 629141872 4.960000e-33 152
51 TraesCS2B01G036100 chr6A 76.730 318 47 19 2100 2394 467576993 467577306 4.960000e-33 152
52 TraesCS2B01G036100 chr6A 76.341 317 46 18 2102 2394 552747914 552747603 2.990000e-30 143


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G036100 chr2B 17201168 17204043 2875 False 5312.000000 5312 100.000000 1 2876 1 chr2B.!!$F3 2875
1 TraesCS2B01G036100 chr2B 16968275 16969892 1617 True 884.000000 959 97.625000 973 2597 3 chr2B.!!$R6 1624
2 TraesCS2B01G036100 chr2B 17030002 17030589 587 True 708.000000 708 88.514000 1434 2020 1 chr2B.!!$R1 586
3 TraesCS2B01G036100 chr2B 67546949 67547495 546 False 701.000000 701 89.781000 427 973 1 chr2B.!!$F5 546
4 TraesCS2B01G036100 chr2D 11166467 11168411 1944 True 1302.500000 1421 91.580500 973 2876 2 chr2D.!!$R3 1903
5 TraesCS2B01G036100 chr2D 11130417 11131935 1518 True 1139.500000 1327 94.626000 1402 2876 2 chr2D.!!$R2 1474
6 TraesCS2B01G036100 chr2D 26353264 26354440 1176 True 412.500000 649 84.954000 1391 2876 2 chr2D.!!$R4 1485
7 TraesCS2B01G036100 chrUn 12508885 12511090 2205 True 724.666667 1007 91.295667 973 2709 3 chrUn.!!$R1 1736
8 TraesCS2B01G036100 chrUn 313026001 313027148 1147 False 530.500000 595 88.850000 973 2002 2 chrUn.!!$F2 1029
9 TraesCS2B01G036100 chr1B 113813661 113814213 552 False 791.000000 791 92.460000 427 982 1 chr1B.!!$F1 555
10 TraesCS2B01G036100 chr5B 540697777 540698324 547 False 730.000000 730 90.710000 427 974 1 chr5B.!!$F3 547
11 TraesCS2B01G036100 chr6D 78337502 78338049 547 False 725.000000 725 90.528000 427 974 1 chr6D.!!$F1 547
12 TraesCS2B01G036100 chr6D 82650706 82651253 547 True 725.000000 725 90.528000 427 974 1 chr6D.!!$R1 547
13 TraesCS2B01G036100 chr6D 335039527 335040059 532 True 689.000000 689 89.981000 436 973 1 chr6D.!!$R2 537
14 TraesCS2B01G036100 chr7B 609745951 609746495 544 True 721.000000 721 90.528000 427 974 1 chr7B.!!$R1 547
15 TraesCS2B01G036100 chr2A 468491767 468492314 547 False 708.000000 708 89.982000 427 974 1 chr2A.!!$F1 547
16 TraesCS2B01G036100 chr2A 28674241 28675925 1684 True 377.666667 603 84.508333 973 2876 3 chr2A.!!$R1 1903
17 TraesCS2B01G036100 chr3B 18390221 18390768 547 False 691.000000 691 89.435000 427 974 1 chr3B.!!$F1 547

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
299 300 0.036875 CCCTTCCCTTGAACGCTTCT 59.963 55.0 0.0 0.0 0.0 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2021 2780 2.584835 TGCTTCACCTTTAGTGCCAT 57.415 45.0 0.0 0.0 46.81 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.668386 GGGCTGCTGTACACAACC 58.332 61.111 0.00 0.51 0.00 3.77
18 19 1.971695 GGGCTGCTGTACACAACCC 60.972 63.158 16.22 16.22 0.00 4.11
19 20 1.228124 GGCTGCTGTACACAACCCA 60.228 57.895 0.00 0.00 0.00 4.51
20 21 0.821711 GGCTGCTGTACACAACCCAA 60.822 55.000 0.00 0.00 0.00 4.12
21 22 0.593128 GCTGCTGTACACAACCCAAG 59.407 55.000 0.00 0.00 0.00 3.61
22 23 1.238439 CTGCTGTACACAACCCAAGG 58.762 55.000 0.00 0.00 0.00 3.61
23 24 0.821711 TGCTGTACACAACCCAAGGC 60.822 55.000 0.00 0.00 0.00 4.35
24 25 1.852067 GCTGTACACAACCCAAGGCG 61.852 60.000 0.00 0.00 0.00 5.52
25 26 1.852067 CTGTACACAACCCAAGGCGC 61.852 60.000 0.00 0.00 0.00 6.53
26 27 1.894756 GTACACAACCCAAGGCGCA 60.895 57.895 10.83 0.00 0.00 6.09
27 28 1.599518 TACACAACCCAAGGCGCAG 60.600 57.895 10.83 0.00 0.00 5.18
42 43 4.421554 CAGCCCCTCCTCTCCCCA 62.422 72.222 0.00 0.00 0.00 4.96
43 44 3.626596 AGCCCCTCCTCTCCCCAA 61.627 66.667 0.00 0.00 0.00 4.12
44 45 3.412408 GCCCCTCCTCTCCCCAAC 61.412 72.222 0.00 0.00 0.00 3.77
45 46 2.124996 CCCCTCCTCTCCCCAACA 59.875 66.667 0.00 0.00 0.00 3.33
46 47 2.301738 CCCCTCCTCTCCCCAACAC 61.302 68.421 0.00 0.00 0.00 3.32
47 48 2.301738 CCCTCCTCTCCCCAACACC 61.302 68.421 0.00 0.00 0.00 4.16
48 49 1.229658 CCTCCTCTCCCCAACACCT 60.230 63.158 0.00 0.00 0.00 4.00
49 50 1.268283 CCTCCTCTCCCCAACACCTC 61.268 65.000 0.00 0.00 0.00 3.85
50 51 0.252467 CTCCTCTCCCCAACACCTCT 60.252 60.000 0.00 0.00 0.00 3.69
51 52 0.252284 TCCTCTCCCCAACACCTCTC 60.252 60.000 0.00 0.00 0.00 3.20
52 53 1.268283 CCTCTCCCCAACACCTCTCC 61.268 65.000 0.00 0.00 0.00 3.71
53 54 0.252467 CTCTCCCCAACACCTCTCCT 60.252 60.000 0.00 0.00 0.00 3.69
54 55 0.252284 TCTCCCCAACACCTCTCCTC 60.252 60.000 0.00 0.00 0.00 3.71
55 56 1.229529 TCCCCAACACCTCTCCTCC 60.230 63.158 0.00 0.00 0.00 4.30
56 57 1.229658 CCCCAACACCTCTCCTCCT 60.230 63.158 0.00 0.00 0.00 3.69
57 58 1.268283 CCCCAACACCTCTCCTCCTC 61.268 65.000 0.00 0.00 0.00 3.71
58 59 1.268283 CCCAACACCTCTCCTCCTCC 61.268 65.000 0.00 0.00 0.00 4.30
59 60 1.608717 CCAACACCTCTCCTCCTCCG 61.609 65.000 0.00 0.00 0.00 4.63
60 61 0.900647 CAACACCTCTCCTCCTCCGT 60.901 60.000 0.00 0.00 0.00 4.69
61 62 0.178929 AACACCTCTCCTCCTCCGTT 60.179 55.000 0.00 0.00 0.00 4.44
62 63 0.702902 ACACCTCTCCTCCTCCGTTA 59.297 55.000 0.00 0.00 0.00 3.18
63 64 1.104630 CACCTCTCCTCCTCCGTTAC 58.895 60.000 0.00 0.00 0.00 2.50
64 65 0.394080 ACCTCTCCTCCTCCGTTACG 60.394 60.000 0.00 0.00 0.00 3.18
65 66 0.394080 CCTCTCCTCCTCCGTTACGT 60.394 60.000 3.52 0.00 0.00 3.57
66 67 0.733729 CTCTCCTCCTCCGTTACGTG 59.266 60.000 3.52 0.00 0.00 4.49
67 68 1.139095 CTCCTCCTCCGTTACGTGC 59.861 63.158 3.52 0.00 0.00 5.34
68 69 1.303888 TCCTCCTCCGTTACGTGCT 60.304 57.895 3.52 0.00 0.00 4.40
69 70 0.896940 TCCTCCTCCGTTACGTGCTT 60.897 55.000 3.52 0.00 0.00 3.91
70 71 0.736325 CCTCCTCCGTTACGTGCTTG 60.736 60.000 3.52 0.00 0.00 4.01
71 72 0.736325 CTCCTCCGTTACGTGCTTGG 60.736 60.000 3.52 0.00 0.00 3.61
72 73 2.388232 CCTCCGTTACGTGCTTGGC 61.388 63.158 3.52 0.00 0.00 4.52
73 74 2.726691 CTCCGTTACGTGCTTGGCG 61.727 63.158 3.52 0.00 0.00 5.69
74 75 2.735478 CCGTTACGTGCTTGGCGA 60.735 61.111 3.52 0.00 0.00 5.54
75 76 2.311701 CCGTTACGTGCTTGGCGAA 61.312 57.895 3.52 0.00 0.00 4.70
76 77 1.129809 CGTTACGTGCTTGGCGAAG 59.870 57.895 3.77 3.77 0.00 3.79
89 90 3.599584 CGAAGCCCTGTCGGAGTA 58.400 61.111 0.00 0.00 34.85 2.59
90 91 1.139095 CGAAGCCCTGTCGGAGTAC 59.861 63.158 0.00 0.00 34.85 2.73
91 92 1.313812 CGAAGCCCTGTCGGAGTACT 61.314 60.000 0.00 0.00 34.85 2.73
92 93 0.173708 GAAGCCCTGTCGGAGTACTG 59.826 60.000 0.00 0.00 0.00 2.74
93 94 1.889530 AAGCCCTGTCGGAGTACTGC 61.890 60.000 0.00 0.73 0.00 4.40
94 95 2.352032 GCCCTGTCGGAGTACTGCT 61.352 63.158 12.91 0.00 0.00 4.24
95 96 1.513158 CCCTGTCGGAGTACTGCTG 59.487 63.158 12.91 6.38 0.00 4.41
96 97 1.153745 CCTGTCGGAGTACTGCTGC 60.154 63.158 12.91 5.56 0.00 5.25
97 98 1.586541 CTGTCGGAGTACTGCTGCA 59.413 57.895 12.91 0.88 35.02 4.41
98 99 0.734253 CTGTCGGAGTACTGCTGCAC 60.734 60.000 12.91 6.89 35.02 4.57
99 100 1.446272 GTCGGAGTACTGCTGCACC 60.446 63.158 12.91 0.00 35.02 5.01
100 101 1.906333 TCGGAGTACTGCTGCACCA 60.906 57.895 12.91 0.00 35.02 4.17
101 102 1.005037 CGGAGTACTGCTGCACCAA 60.005 57.895 12.91 0.00 35.02 3.67
102 103 1.291877 CGGAGTACTGCTGCACCAAC 61.292 60.000 12.91 0.00 35.02 3.77
103 104 0.250295 GGAGTACTGCTGCACCAACA 60.250 55.000 7.20 0.00 35.45 3.33
104 105 0.868406 GAGTACTGCTGCACCAACAC 59.132 55.000 0.00 0.00 0.00 3.32
105 106 0.535102 AGTACTGCTGCACCAACACC 60.535 55.000 0.00 0.00 0.00 4.16
106 107 0.817634 GTACTGCTGCACCAACACCA 60.818 55.000 0.00 0.00 0.00 4.17
107 108 0.817634 TACTGCTGCACCAACACCAC 60.818 55.000 0.00 0.00 0.00 4.16
108 109 2.832661 TGCTGCACCAACACCACC 60.833 61.111 0.00 0.00 0.00 4.61
109 110 2.832661 GCTGCACCAACACCACCA 60.833 61.111 0.00 0.00 0.00 4.17
110 111 3.119193 CTGCACCAACACCACCAC 58.881 61.111 0.00 0.00 0.00 4.16
111 112 2.826287 TGCACCAACACCACCACG 60.826 61.111 0.00 0.00 0.00 4.94
112 113 4.264638 GCACCAACACCACCACGC 62.265 66.667 0.00 0.00 0.00 5.34
113 114 3.591835 CACCAACACCACCACGCC 61.592 66.667 0.00 0.00 0.00 5.68
116 117 3.645975 CAACACCACCACGCCGTC 61.646 66.667 0.00 0.00 0.00 4.79
131 132 3.414700 GTCGTGCTGCGGTTGGAG 61.415 66.667 0.00 0.00 41.72 3.86
137 138 4.308526 CTGCGGTTGGAGCAATCT 57.691 55.556 0.00 0.00 44.67 2.40
138 139 2.559785 CTGCGGTTGGAGCAATCTT 58.440 52.632 0.00 0.00 44.67 2.40
139 140 0.449388 CTGCGGTTGGAGCAATCTTC 59.551 55.000 0.00 0.00 44.67 2.87
140 141 0.960364 TGCGGTTGGAGCAATCTTCC 60.960 55.000 0.00 0.00 42.18 3.46
141 142 0.678048 GCGGTTGGAGCAATCTTCCT 60.678 55.000 0.00 0.00 34.19 3.36
142 143 1.373570 CGGTTGGAGCAATCTTCCTC 58.626 55.000 0.00 0.00 0.00 3.71
143 144 1.339055 CGGTTGGAGCAATCTTCCTCA 60.339 52.381 0.00 0.00 0.00 3.86
144 145 2.795329 GGTTGGAGCAATCTTCCTCAA 58.205 47.619 0.00 0.00 0.00 3.02
145 146 2.489722 GGTTGGAGCAATCTTCCTCAAC 59.510 50.000 0.00 0.00 0.00 3.18
146 147 2.489722 GTTGGAGCAATCTTCCTCAACC 59.510 50.000 0.00 0.00 0.00 3.77
147 148 1.988107 TGGAGCAATCTTCCTCAACCT 59.012 47.619 0.00 0.00 0.00 3.50
148 149 2.026822 TGGAGCAATCTTCCTCAACCTC 60.027 50.000 0.00 0.00 0.00 3.85
149 150 2.238395 GGAGCAATCTTCCTCAACCTCT 59.762 50.000 0.00 0.00 0.00 3.69
150 151 3.530535 GAGCAATCTTCCTCAACCTCTC 58.469 50.000 0.00 0.00 0.00 3.20
151 152 2.238395 AGCAATCTTCCTCAACCTCTCC 59.762 50.000 0.00 0.00 0.00 3.71
152 153 2.238395 GCAATCTTCCTCAACCTCTCCT 59.762 50.000 0.00 0.00 0.00 3.69
153 154 3.308046 GCAATCTTCCTCAACCTCTCCTT 60.308 47.826 0.00 0.00 0.00 3.36
154 155 4.512484 CAATCTTCCTCAACCTCTCCTTC 58.488 47.826 0.00 0.00 0.00 3.46
155 156 2.541466 TCTTCCTCAACCTCTCCTTCC 58.459 52.381 0.00 0.00 0.00 3.46
156 157 2.112691 TCTTCCTCAACCTCTCCTTCCT 59.887 50.000 0.00 0.00 0.00 3.36
157 158 2.239681 TCCTCAACCTCTCCTTCCTC 57.760 55.000 0.00 0.00 0.00 3.71
158 159 1.199615 CCTCAACCTCTCCTTCCTCC 58.800 60.000 0.00 0.00 0.00 4.30
159 160 1.273552 CCTCAACCTCTCCTTCCTCCT 60.274 57.143 0.00 0.00 0.00 3.69
160 161 2.545810 CTCAACCTCTCCTTCCTCCTT 58.454 52.381 0.00 0.00 0.00 3.36
161 162 2.235898 CTCAACCTCTCCTTCCTCCTTG 59.764 54.545 0.00 0.00 0.00 3.61
162 163 0.988063 AACCTCTCCTTCCTCCTTGC 59.012 55.000 0.00 0.00 0.00 4.01
163 164 0.118144 ACCTCTCCTTCCTCCTTGCT 59.882 55.000 0.00 0.00 0.00 3.91
164 165 0.540923 CCTCTCCTTCCTCCTTGCTG 59.459 60.000 0.00 0.00 0.00 4.41
165 166 0.540923 CTCTCCTTCCTCCTTGCTGG 59.459 60.000 0.00 0.00 37.10 4.85
166 167 0.117140 TCTCCTTCCTCCTTGCTGGA 59.883 55.000 0.00 0.00 43.86 3.86
167 168 1.211456 CTCCTTCCTCCTTGCTGGAT 58.789 55.000 0.00 0.00 45.16 3.41
168 169 1.140652 CTCCTTCCTCCTTGCTGGATC 59.859 57.143 0.00 0.00 45.16 3.36
169 170 0.914644 CCTTCCTCCTTGCTGGATCA 59.085 55.000 0.00 0.00 45.16 2.92
170 171 1.283029 CCTTCCTCCTTGCTGGATCAA 59.717 52.381 0.00 0.00 45.16 2.57
171 172 2.641305 CTTCCTCCTTGCTGGATCAAG 58.359 52.381 0.00 0.00 45.16 3.02
172 173 1.956869 TCCTCCTTGCTGGATCAAGA 58.043 50.000 0.00 0.00 45.16 3.02
173 174 1.556911 TCCTCCTTGCTGGATCAAGAC 59.443 52.381 0.00 0.00 45.16 3.01
174 175 1.280133 CCTCCTTGCTGGATCAAGACA 59.720 52.381 0.00 0.00 45.16 3.41
175 176 2.630158 CTCCTTGCTGGATCAAGACAG 58.370 52.381 0.00 0.00 45.16 3.51
176 177 2.235650 CTCCTTGCTGGATCAAGACAGA 59.764 50.000 0.00 0.00 45.16 3.41
177 178 2.235650 TCCTTGCTGGATCAAGACAGAG 59.764 50.000 0.00 0.48 44.61 3.35
178 179 2.630158 CTTGCTGGATCAAGACAGAGG 58.370 52.381 0.00 0.00 44.61 3.69
179 180 1.942776 TGCTGGATCAAGACAGAGGA 58.057 50.000 0.00 0.00 36.86 3.71
180 181 1.829849 TGCTGGATCAAGACAGAGGAG 59.170 52.381 0.00 0.00 36.86 3.69
181 182 2.106566 GCTGGATCAAGACAGAGGAGA 58.893 52.381 0.00 0.00 36.86 3.71
182 183 2.159114 GCTGGATCAAGACAGAGGAGAC 60.159 54.545 0.00 0.00 36.86 3.36
183 184 2.095461 TGGATCAAGACAGAGGAGACG 58.905 52.381 0.00 0.00 0.00 4.18
184 185 2.096248 GGATCAAGACAGAGGAGACGT 58.904 52.381 0.00 0.00 0.00 4.34
185 186 2.098443 GGATCAAGACAGAGGAGACGTC 59.902 54.545 7.70 7.70 0.00 4.34
186 187 1.157585 TCAAGACAGAGGAGACGTCG 58.842 55.000 10.46 0.00 34.80 5.12
187 188 0.875728 CAAGACAGAGGAGACGTCGT 59.124 55.000 10.46 0.00 34.80 4.34
188 189 1.135916 CAAGACAGAGGAGACGTCGTC 60.136 57.143 17.70 17.70 37.78 4.20
189 190 0.674269 AGACAGAGGAGACGTCGTCC 60.674 60.000 21.40 20.13 38.19 4.79
190 191 1.968703 GACAGAGGAGACGTCGTCCG 61.969 65.000 21.40 13.41 38.19 4.79
206 207 3.529504 CGTCCCGTACGTGTGTTG 58.470 61.111 15.21 0.00 46.72 3.33
207 208 1.008652 CGTCCCGTACGTGTGTTGA 60.009 57.895 15.21 0.00 46.72 3.18
208 209 0.594540 CGTCCCGTACGTGTGTTGAA 60.595 55.000 15.21 0.00 46.72 2.69
209 210 0.854705 GTCCCGTACGTGTGTTGAAC 59.145 55.000 15.21 0.00 0.00 3.18
210 211 0.594540 TCCCGTACGTGTGTTGAACG 60.595 55.000 15.21 0.00 46.32 3.95
211 212 1.199859 CCGTACGTGTGTTGAACGC 59.800 57.895 15.21 1.20 44.80 4.84
216 217 2.935955 GTGTGTTGAACGCGGAGG 59.064 61.111 12.47 0.00 0.00 4.30
217 218 1.885850 GTGTGTTGAACGCGGAGGT 60.886 57.895 12.47 0.00 0.00 3.85
218 219 1.885388 TGTGTTGAACGCGGAGGTG 60.885 57.895 12.47 0.00 0.00 4.00
219 220 2.970324 TGTTGAACGCGGAGGTGC 60.970 61.111 12.47 0.00 0.00 5.01
220 221 2.665185 GTTGAACGCGGAGGTGCT 60.665 61.111 12.47 0.00 0.00 4.40
221 222 2.664851 TTGAACGCGGAGGTGCTG 60.665 61.111 12.47 0.00 0.00 4.41
222 223 3.454587 TTGAACGCGGAGGTGCTGT 62.455 57.895 12.47 0.00 0.00 4.40
223 224 3.112709 GAACGCGGAGGTGCTGTC 61.113 66.667 12.47 0.00 0.00 3.51
224 225 4.681978 AACGCGGAGGTGCTGTCC 62.682 66.667 12.47 0.00 0.00 4.02
226 227 4.379243 CGCGGAGGTGCTGTCCTT 62.379 66.667 0.00 0.00 38.02 3.36
227 228 2.032681 GCGGAGGTGCTGTCCTTT 59.967 61.111 0.00 0.00 38.02 3.11
228 229 2.035442 GCGGAGGTGCTGTCCTTTC 61.035 63.158 0.00 0.00 38.02 2.62
229 230 1.371183 CGGAGGTGCTGTCCTTTCA 59.629 57.895 0.00 0.00 38.02 2.69
230 231 0.671781 CGGAGGTGCTGTCCTTTCAG 60.672 60.000 0.00 0.00 38.02 3.02
238 239 1.972872 CTGTCCTTTCAGCACTTGGT 58.027 50.000 0.00 0.00 0.00 3.67
239 240 1.876156 CTGTCCTTTCAGCACTTGGTC 59.124 52.381 0.00 0.00 0.00 4.02
240 241 1.211703 TGTCCTTTCAGCACTTGGTCA 59.788 47.619 0.00 0.00 0.00 4.02
241 242 2.158623 TGTCCTTTCAGCACTTGGTCAT 60.159 45.455 0.00 0.00 0.00 3.06
242 243 2.485814 GTCCTTTCAGCACTTGGTCATC 59.514 50.000 0.00 0.00 0.00 2.92
243 244 1.466167 CCTTTCAGCACTTGGTCATCG 59.534 52.381 0.00 0.00 0.00 3.84
244 245 1.466167 CTTTCAGCACTTGGTCATCGG 59.534 52.381 0.00 0.00 0.00 4.18
245 246 0.396435 TTCAGCACTTGGTCATCGGT 59.604 50.000 0.00 0.00 0.00 4.69
246 247 0.320683 TCAGCACTTGGTCATCGGTG 60.321 55.000 0.00 0.00 0.00 4.94
247 248 0.320683 CAGCACTTGGTCATCGGTGA 60.321 55.000 0.00 0.00 32.12 4.02
248 249 0.615331 AGCACTTGGTCATCGGTGAT 59.385 50.000 0.00 0.00 36.60 3.06
249 250 1.009829 GCACTTGGTCATCGGTGATC 58.990 55.000 0.00 0.12 36.60 2.92
250 251 1.406069 GCACTTGGTCATCGGTGATCT 60.406 52.381 10.89 0.00 36.40 2.75
251 252 2.274437 CACTTGGTCATCGGTGATCTG 58.726 52.381 10.89 5.77 36.40 2.90
252 253 2.094026 CACTTGGTCATCGGTGATCTGA 60.094 50.000 10.89 0.00 36.40 3.27
253 254 2.567169 ACTTGGTCATCGGTGATCTGAA 59.433 45.455 10.89 0.00 36.40 3.02
254 255 3.198635 ACTTGGTCATCGGTGATCTGAAT 59.801 43.478 10.89 0.00 36.40 2.57
255 256 3.459232 TGGTCATCGGTGATCTGAATC 57.541 47.619 10.89 0.00 36.40 2.52
256 257 2.765699 TGGTCATCGGTGATCTGAATCA 59.234 45.455 10.89 0.00 39.63 2.57
263 264 3.648528 TGATCTGAATCACGGCGAG 57.351 52.632 16.62 5.72 36.98 5.03
264 265 0.817654 TGATCTGAATCACGGCGAGT 59.182 50.000 16.62 0.00 36.98 4.18
265 266 2.021457 TGATCTGAATCACGGCGAGTA 58.979 47.619 16.62 0.00 36.98 2.59
266 267 2.223502 TGATCTGAATCACGGCGAGTAC 60.224 50.000 16.62 2.58 36.98 2.73
267 268 0.098200 TCTGAATCACGGCGAGTACG 59.902 55.000 16.62 0.00 42.93 3.67
268 269 0.098200 CTGAATCACGGCGAGTACGA 59.902 55.000 16.62 1.74 42.66 3.43
269 270 0.179181 TGAATCACGGCGAGTACGAC 60.179 55.000 16.62 0.00 45.02 4.34
270 271 0.098376 GAATCACGGCGAGTACGACT 59.902 55.000 16.62 0.00 46.46 4.18
271 272 0.098376 AATCACGGCGAGTACGACTC 59.902 55.000 16.62 0.00 46.46 3.36
272 273 1.712977 ATCACGGCGAGTACGACTCC 61.713 60.000 16.62 0.00 46.46 3.85
273 274 2.359107 ACGGCGAGTACGACTCCA 60.359 61.111 16.62 0.00 46.46 3.86
274 275 1.748122 ACGGCGAGTACGACTCCAT 60.748 57.895 16.62 0.00 46.46 3.41
275 276 1.009900 CGGCGAGTACGACTCCATC 60.010 63.158 0.00 1.13 46.46 3.51
276 277 1.712018 CGGCGAGTACGACTCCATCA 61.712 60.000 0.00 0.00 46.46 3.07
277 278 0.669077 GGCGAGTACGACTCCATCAT 59.331 55.000 8.73 0.00 45.04 2.45
278 279 1.335142 GGCGAGTACGACTCCATCATC 60.335 57.143 8.73 0.00 45.04 2.92
279 280 1.333931 GCGAGTACGACTCCATCATCA 59.666 52.381 8.73 0.00 42.12 3.07
280 281 2.855187 GCGAGTACGACTCCATCATCAC 60.855 54.545 8.73 0.00 42.12 3.06
281 282 2.287069 CGAGTACGACTCCATCATCACC 60.287 54.545 8.73 0.00 42.12 4.02
282 283 2.032620 AGTACGACTCCATCATCACCC 58.967 52.381 0.00 0.00 0.00 4.61
283 284 2.032620 GTACGACTCCATCATCACCCT 58.967 52.381 0.00 0.00 0.00 4.34
284 285 1.573108 ACGACTCCATCATCACCCTT 58.427 50.000 0.00 0.00 0.00 3.95
285 286 1.482593 ACGACTCCATCATCACCCTTC 59.517 52.381 0.00 0.00 0.00 3.46
286 287 1.202580 CGACTCCATCATCACCCTTCC 60.203 57.143 0.00 0.00 0.00 3.46
287 288 1.141858 GACTCCATCATCACCCTTCCC 59.858 57.143 0.00 0.00 0.00 3.97
288 289 1.274650 ACTCCATCATCACCCTTCCCT 60.275 52.381 0.00 0.00 0.00 4.20
289 290 1.849039 CTCCATCATCACCCTTCCCTT 59.151 52.381 0.00 0.00 0.00 3.95
290 291 1.565759 TCCATCATCACCCTTCCCTTG 59.434 52.381 0.00 0.00 0.00 3.61
291 292 1.565759 CCATCATCACCCTTCCCTTGA 59.434 52.381 0.00 0.00 0.00 3.02
292 293 2.025037 CCATCATCACCCTTCCCTTGAA 60.025 50.000 0.00 0.00 0.00 2.69
293 294 2.879103 TCATCACCCTTCCCTTGAAC 57.121 50.000 0.00 0.00 0.00 3.18
294 295 1.003118 TCATCACCCTTCCCTTGAACG 59.997 52.381 0.00 0.00 0.00 3.95
295 296 0.322546 ATCACCCTTCCCTTGAACGC 60.323 55.000 0.00 0.00 0.00 4.84
296 297 1.073199 CACCCTTCCCTTGAACGCT 59.927 57.895 0.00 0.00 0.00 5.07
297 298 0.537371 CACCCTTCCCTTGAACGCTT 60.537 55.000 0.00 0.00 0.00 4.68
298 299 0.250770 ACCCTTCCCTTGAACGCTTC 60.251 55.000 0.00 0.00 0.00 3.86
299 300 0.036875 CCCTTCCCTTGAACGCTTCT 59.963 55.000 0.00 0.00 0.00 2.85
300 301 1.160137 CCTTCCCTTGAACGCTTCTG 58.840 55.000 0.00 0.00 0.00 3.02
301 302 0.519077 CTTCCCTTGAACGCTTCTGC 59.481 55.000 0.00 0.00 0.00 4.26
302 303 0.179032 TTCCCTTGAACGCTTCTGCA 60.179 50.000 0.00 0.00 39.64 4.41
303 304 0.884704 TCCCTTGAACGCTTCTGCAC 60.885 55.000 0.00 0.00 39.64 4.57
304 305 1.205064 CCTTGAACGCTTCTGCACG 59.795 57.895 0.00 0.00 39.64 5.34
305 306 1.439365 CTTGAACGCTTCTGCACGC 60.439 57.895 0.00 0.00 39.64 5.34
311 312 4.402192 GCTTCTGCACGCGATCTA 57.598 55.556 15.93 0.00 39.41 1.98
312 313 1.920762 GCTTCTGCACGCGATCTAC 59.079 57.895 15.93 0.00 39.41 2.59
313 314 0.802222 GCTTCTGCACGCGATCTACA 60.802 55.000 15.93 1.81 39.41 2.74
314 315 1.629013 CTTCTGCACGCGATCTACAA 58.371 50.000 15.93 0.00 0.00 2.41
315 316 1.585668 CTTCTGCACGCGATCTACAAG 59.414 52.381 15.93 3.51 0.00 3.16
316 317 0.526211 TCTGCACGCGATCTACAAGT 59.474 50.000 15.93 0.00 0.00 3.16
317 318 0.642291 CTGCACGCGATCTACAAGTG 59.358 55.000 15.93 0.00 36.05 3.16
318 319 0.735978 TGCACGCGATCTACAAGTGG 60.736 55.000 15.93 0.00 33.80 4.00
319 320 0.736325 GCACGCGATCTACAAGTGGT 60.736 55.000 15.93 0.00 33.80 4.16
320 321 1.468565 GCACGCGATCTACAAGTGGTA 60.469 52.381 15.93 0.00 33.80 3.25
321 322 2.798499 GCACGCGATCTACAAGTGGTAT 60.798 50.000 15.93 0.00 33.80 2.73
322 323 2.789339 CACGCGATCTACAAGTGGTATG 59.211 50.000 15.93 0.00 0.00 2.39
323 324 2.426024 ACGCGATCTACAAGTGGTATGT 59.574 45.455 15.93 0.00 34.81 2.29
324 325 3.628942 ACGCGATCTACAAGTGGTATGTA 59.371 43.478 15.93 0.00 32.27 2.29
333 334 5.880054 ACAAGTGGTATGTAGATGCAAAC 57.120 39.130 0.00 0.00 0.00 2.93
334 335 5.560724 ACAAGTGGTATGTAGATGCAAACT 58.439 37.500 0.00 0.00 0.00 2.66
335 336 5.643777 ACAAGTGGTATGTAGATGCAAACTC 59.356 40.000 0.00 0.00 0.00 3.01
336 337 5.420725 AGTGGTATGTAGATGCAAACTCA 57.579 39.130 0.00 0.00 0.00 3.41
337 338 5.178797 AGTGGTATGTAGATGCAAACTCAC 58.821 41.667 0.00 0.00 0.00 3.51
338 339 5.046304 AGTGGTATGTAGATGCAAACTCACT 60.046 40.000 0.00 0.00 0.00 3.41
339 340 5.292101 GTGGTATGTAGATGCAAACTCACTC 59.708 44.000 0.00 0.00 0.00 3.51
340 341 4.811557 GGTATGTAGATGCAAACTCACTCC 59.188 45.833 0.00 0.00 0.00 3.85
341 342 3.334583 TGTAGATGCAAACTCACTCCC 57.665 47.619 0.00 0.00 0.00 4.30
342 343 2.906389 TGTAGATGCAAACTCACTCCCT 59.094 45.455 0.00 0.00 0.00 4.20
343 344 3.327757 TGTAGATGCAAACTCACTCCCTT 59.672 43.478 0.00 0.00 0.00 3.95
344 345 2.787994 AGATGCAAACTCACTCCCTTG 58.212 47.619 0.00 0.00 0.00 3.61
345 346 2.373169 AGATGCAAACTCACTCCCTTGA 59.627 45.455 0.00 0.00 0.00 3.02
346 347 1.967319 TGCAAACTCACTCCCTTGAC 58.033 50.000 0.00 0.00 0.00 3.18
347 348 1.490490 TGCAAACTCACTCCCTTGACT 59.510 47.619 0.00 0.00 0.00 3.41
348 349 2.147150 GCAAACTCACTCCCTTGACTC 58.853 52.381 0.00 0.00 0.00 3.36
349 350 2.408050 CAAACTCACTCCCTTGACTCG 58.592 52.381 0.00 0.00 0.00 4.18
350 351 1.705873 AACTCACTCCCTTGACTCGT 58.294 50.000 0.00 0.00 0.00 4.18
351 352 1.705873 ACTCACTCCCTTGACTCGTT 58.294 50.000 0.00 0.00 0.00 3.85
352 353 1.341531 ACTCACTCCCTTGACTCGTTG 59.658 52.381 0.00 0.00 0.00 4.10
353 354 1.613925 CTCACTCCCTTGACTCGTTGA 59.386 52.381 0.00 0.00 0.00 3.18
354 355 2.232452 CTCACTCCCTTGACTCGTTGAT 59.768 50.000 0.00 0.00 0.00 2.57
355 356 2.632996 TCACTCCCTTGACTCGTTGATT 59.367 45.455 0.00 0.00 0.00 2.57
356 357 3.830178 TCACTCCCTTGACTCGTTGATTA 59.170 43.478 0.00 0.00 0.00 1.75
357 358 4.082190 TCACTCCCTTGACTCGTTGATTAG 60.082 45.833 0.00 0.00 0.00 1.73
358 359 4.082190 CACTCCCTTGACTCGTTGATTAGA 60.082 45.833 0.00 0.00 0.00 2.10
359 360 4.712337 ACTCCCTTGACTCGTTGATTAGAT 59.288 41.667 0.00 0.00 0.00 1.98
360 361 5.011090 TCCCTTGACTCGTTGATTAGATG 57.989 43.478 0.00 0.00 0.00 2.90
361 362 4.709886 TCCCTTGACTCGTTGATTAGATGA 59.290 41.667 0.00 0.00 0.00 2.92
362 363 5.186992 TCCCTTGACTCGTTGATTAGATGAA 59.813 40.000 0.00 0.00 0.00 2.57
363 364 5.292101 CCCTTGACTCGTTGATTAGATGAAC 59.708 44.000 0.00 0.00 0.00 3.18
364 365 6.102663 CCTTGACTCGTTGATTAGATGAACT 58.897 40.000 0.00 0.00 0.00 3.01
365 366 6.254589 CCTTGACTCGTTGATTAGATGAACTC 59.745 42.308 0.00 0.00 0.00 3.01
366 367 6.267496 TGACTCGTTGATTAGATGAACTCA 57.733 37.500 0.00 0.00 0.00 3.41
367 368 6.867550 TGACTCGTTGATTAGATGAACTCAT 58.132 36.000 0.00 0.00 39.70 2.90
368 369 7.996385 TGACTCGTTGATTAGATGAACTCATA 58.004 34.615 0.00 0.00 36.57 2.15
369 370 8.131731 TGACTCGTTGATTAGATGAACTCATAG 58.868 37.037 0.00 0.00 36.57 2.23
370 371 8.226819 ACTCGTTGATTAGATGAACTCATAGA 57.773 34.615 0.00 0.00 36.57 1.98
371 372 8.855110 ACTCGTTGATTAGATGAACTCATAGAT 58.145 33.333 0.00 0.00 36.57 1.98
372 373 9.127006 CTCGTTGATTAGATGAACTCATAGATG 57.873 37.037 0.00 0.00 36.57 2.90
373 374 8.084684 TCGTTGATTAGATGAACTCATAGATGG 58.915 37.037 0.00 0.00 36.57 3.51
374 375 8.084684 CGTTGATTAGATGAACTCATAGATGGA 58.915 37.037 0.00 0.00 36.57 3.41
375 376 9.941325 GTTGATTAGATGAACTCATAGATGGAT 57.059 33.333 0.00 0.00 36.57 3.41
377 378 9.544579 TGATTAGATGAACTCATAGATGGATCT 57.455 33.333 0.00 0.00 40.86 2.75
380 381 7.006865 AGATGAACTCATAGATGGATCTTGG 57.993 40.000 0.00 0.00 38.32 3.61
381 382 6.558014 AGATGAACTCATAGATGGATCTTGGT 59.442 38.462 0.00 0.00 38.32 3.67
382 383 5.922053 TGAACTCATAGATGGATCTTGGTG 58.078 41.667 0.00 0.00 38.32 4.17
383 384 5.662657 TGAACTCATAGATGGATCTTGGTGA 59.337 40.000 0.00 0.00 38.32 4.02
384 385 6.156775 TGAACTCATAGATGGATCTTGGTGAA 59.843 38.462 0.00 0.00 38.32 3.18
385 386 6.566079 ACTCATAGATGGATCTTGGTGAAA 57.434 37.500 0.00 0.00 38.32 2.69
386 387 6.352516 ACTCATAGATGGATCTTGGTGAAAC 58.647 40.000 0.00 0.00 38.32 2.78
422 423 7.814264 TTTTAATTTACTACAACGTTCCCCA 57.186 32.000 0.00 0.00 0.00 4.96
423 424 7.814264 TTTAATTTACTACAACGTTCCCCAA 57.186 32.000 0.00 0.00 0.00 4.12
424 425 5.694231 AATTTACTACAACGTTCCCCAAC 57.306 39.130 0.00 0.00 0.00 3.77
425 426 3.834489 TTACTACAACGTTCCCCAACA 57.166 42.857 0.00 0.00 32.14 3.33
434 435 0.179040 GTTCCCCAACACTTCCGTCA 60.179 55.000 0.00 0.00 32.14 4.35
448 449 2.777972 CGTCATACCTTCGGGGCGA 61.778 63.158 0.00 0.00 40.03 5.54
460 461 2.586792 GGGCGATGGAGCTCAAGT 59.413 61.111 17.19 0.00 37.60 3.16
468 469 3.737850 GATGGAGCTCAAGTAATGGGAG 58.262 50.000 17.19 0.00 0.00 4.30
499 500 1.656587 AGTGTATTGCCCTCCACTCA 58.343 50.000 0.00 0.00 32.97 3.41
515 516 0.325671 CTCACCCTCCCTTGAGCCTA 60.326 60.000 0.00 0.00 37.29 3.93
519 520 2.024941 CACCCTCCCTTGAGCCTAATTT 60.025 50.000 0.00 0.00 37.29 1.82
778 780 1.056660 ACCACATCTTCTTCCGGTGT 58.943 50.000 0.00 0.00 0.00 4.16
782 784 2.496070 CACATCTTCTTCCGGTGTCCTA 59.504 50.000 0.00 0.00 0.00 2.94
801 803 2.347490 GGCGCAGTTCCTCTGGAA 59.653 61.111 10.83 0.00 43.78 3.53
846 849 0.467290 ATTGGTGCCACGACAACCTT 60.467 50.000 0.00 0.00 0.00 3.50
862 865 0.179001 CCTTCCGGACTTGTTTGGGT 60.179 55.000 1.83 0.00 0.00 4.51
962 965 3.118884 ACCCGCAATAAACTAGTCATCGT 60.119 43.478 0.00 0.00 0.00 3.73
1002 1005 2.950309 CCAATGGCTTCTTCCAGAGATG 59.050 50.000 0.00 0.00 39.89 2.90
1188 1237 0.602638 ACGTCGCTGCCAATTTGAGA 60.603 50.000 0.00 0.00 0.00 3.27
1421 2160 2.486592 TGTTGCAGTGATCATGAAGCAG 59.513 45.455 0.00 0.00 33.14 4.24
1467 2210 2.264005 ACACACGGCAGTTAATGGAA 57.736 45.000 0.00 0.00 0.00 3.53
1468 2211 1.877443 ACACACGGCAGTTAATGGAAC 59.123 47.619 0.00 0.00 38.44 3.62
1956 2704 8.603242 TCCACTTACACTTTTATGTCTTCTTC 57.397 34.615 0.00 0.00 33.85 2.87
2002 2757 7.961326 ATTATTTCTTGGTCCAGCAAGTAAT 57.039 32.000 20.28 20.28 34.44 1.89
2021 2780 8.988934 CAAGTAATTCTGAGTAAACTAGCAACA 58.011 33.333 0.00 0.00 0.00 3.33
2125 2946 1.134068 GCCTCCTTTGGTCATAGGGTC 60.134 57.143 7.44 0.00 31.49 4.46
2192 3016 8.198807 TGAGCATCTCAAATCCTATGAATAGA 57.801 34.615 0.00 0.00 37.57 1.98
2457 3282 0.764369 TTCCTCTCACACCAGCACCT 60.764 55.000 0.00 0.00 0.00 4.00
2472 3298 4.021719 CCAGCACCTGTTTGATTCTTCATT 60.022 41.667 0.00 0.00 0.00 2.57
2520 3349 3.149196 TCAGCTCCCAGTTTCATTTGAC 58.851 45.455 0.00 0.00 0.00 3.18
2639 3468 5.423015 TCTGAGTTTCATCATACAAGGCTC 58.577 41.667 0.00 0.00 0.00 4.70
2679 3508 4.799564 ACAAACAGAAAGCAGGACAAAA 57.200 36.364 0.00 0.00 0.00 2.44
2700 3529 4.255510 ACTGCCCAACCAATATCAATCT 57.744 40.909 0.00 0.00 0.00 2.40
2742 3571 1.084289 GGCTTCTAAACAACGGCGAT 58.916 50.000 16.62 0.00 0.00 4.58
2873 3712 7.901029 TGGATAAACCATTCTTGTATTTTGCA 58.099 30.769 0.00 0.00 44.64 4.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.668386 GGTTGTGTACAGCAGCCC 58.332 61.111 15.54 8.98 32.10 5.19
1 2 0.821711 TTGGGTTGTGTACAGCAGCC 60.822 55.000 17.14 17.14 36.64 4.85
2 3 0.593128 CTTGGGTTGTGTACAGCAGC 59.407 55.000 0.00 0.00 0.00 5.25
3 4 1.238439 CCTTGGGTTGTGTACAGCAG 58.762 55.000 0.00 0.00 0.00 4.24
4 5 0.821711 GCCTTGGGTTGTGTACAGCA 60.822 55.000 0.00 0.00 0.00 4.41
5 6 1.852067 CGCCTTGGGTTGTGTACAGC 61.852 60.000 0.00 0.00 0.00 4.40
6 7 1.852067 GCGCCTTGGGTTGTGTACAG 61.852 60.000 0.00 0.00 0.00 2.74
7 8 1.894756 GCGCCTTGGGTTGTGTACA 60.895 57.895 0.00 0.00 0.00 2.90
8 9 1.852067 CTGCGCCTTGGGTTGTGTAC 61.852 60.000 4.18 0.00 0.00 2.90
9 10 1.599518 CTGCGCCTTGGGTTGTGTA 60.600 57.895 4.18 0.00 0.00 2.90
10 11 2.906897 CTGCGCCTTGGGTTGTGT 60.907 61.111 4.18 0.00 0.00 3.72
11 12 4.347453 GCTGCGCCTTGGGTTGTG 62.347 66.667 4.18 0.00 0.00 3.33
25 26 3.950861 TTGGGGAGAGGAGGGGCTG 62.951 68.421 0.00 0.00 0.00 4.85
26 27 3.626596 TTGGGGAGAGGAGGGGCT 61.627 66.667 0.00 0.00 0.00 5.19
27 28 3.412408 GTTGGGGAGAGGAGGGGC 61.412 72.222 0.00 0.00 0.00 5.80
28 29 2.124996 TGTTGGGGAGAGGAGGGG 59.875 66.667 0.00 0.00 0.00 4.79
29 30 2.301738 GGTGTTGGGGAGAGGAGGG 61.302 68.421 0.00 0.00 0.00 4.30
30 31 1.229658 AGGTGTTGGGGAGAGGAGG 60.230 63.158 0.00 0.00 0.00 4.30
31 32 0.252467 AGAGGTGTTGGGGAGAGGAG 60.252 60.000 0.00 0.00 0.00 3.69
32 33 0.252284 GAGAGGTGTTGGGGAGAGGA 60.252 60.000 0.00 0.00 0.00 3.71
33 34 1.268283 GGAGAGGTGTTGGGGAGAGG 61.268 65.000 0.00 0.00 0.00 3.69
34 35 0.252467 AGGAGAGGTGTTGGGGAGAG 60.252 60.000 0.00 0.00 0.00 3.20
35 36 0.252284 GAGGAGAGGTGTTGGGGAGA 60.252 60.000 0.00 0.00 0.00 3.71
36 37 1.268283 GGAGGAGAGGTGTTGGGGAG 61.268 65.000 0.00 0.00 0.00 4.30
37 38 1.229529 GGAGGAGAGGTGTTGGGGA 60.230 63.158 0.00 0.00 0.00 4.81
38 39 1.229658 AGGAGGAGAGGTGTTGGGG 60.230 63.158 0.00 0.00 0.00 4.96
39 40 1.268283 GGAGGAGGAGAGGTGTTGGG 61.268 65.000 0.00 0.00 0.00 4.12
40 41 1.608717 CGGAGGAGGAGAGGTGTTGG 61.609 65.000 0.00 0.00 0.00 3.77
41 42 0.900647 ACGGAGGAGGAGAGGTGTTG 60.901 60.000 0.00 0.00 0.00 3.33
42 43 0.178929 AACGGAGGAGGAGAGGTGTT 60.179 55.000 0.00 0.00 0.00 3.32
43 44 0.702902 TAACGGAGGAGGAGAGGTGT 59.297 55.000 0.00 0.00 0.00 4.16
44 45 1.104630 GTAACGGAGGAGGAGAGGTG 58.895 60.000 0.00 0.00 0.00 4.00
45 46 0.394080 CGTAACGGAGGAGGAGAGGT 60.394 60.000 0.00 0.00 0.00 3.85
46 47 0.394080 ACGTAACGGAGGAGGAGAGG 60.394 60.000 0.00 0.00 0.00 3.69
47 48 0.733729 CACGTAACGGAGGAGGAGAG 59.266 60.000 0.00 0.00 0.00 3.20
48 49 1.310933 GCACGTAACGGAGGAGGAGA 61.311 60.000 0.00 0.00 0.00 3.71
49 50 1.139095 GCACGTAACGGAGGAGGAG 59.861 63.158 0.00 0.00 0.00 3.69
50 51 0.896940 AAGCACGTAACGGAGGAGGA 60.897 55.000 0.00 0.00 0.00 3.71
51 52 0.736325 CAAGCACGTAACGGAGGAGG 60.736 60.000 0.00 0.00 0.00 4.30
52 53 0.736325 CCAAGCACGTAACGGAGGAG 60.736 60.000 0.00 0.00 0.00 3.69
53 54 1.290955 CCAAGCACGTAACGGAGGA 59.709 57.895 0.00 0.00 0.00 3.71
54 55 2.388232 GCCAAGCACGTAACGGAGG 61.388 63.158 0.00 0.00 0.00 4.30
55 56 2.726691 CGCCAAGCACGTAACGGAG 61.727 63.158 0.00 0.00 0.00 4.63
56 57 2.696409 TTCGCCAAGCACGTAACGGA 62.696 55.000 0.00 0.00 0.00 4.69
57 58 2.222953 CTTCGCCAAGCACGTAACGG 62.223 60.000 0.00 0.00 0.00 4.44
58 59 1.129809 CTTCGCCAAGCACGTAACG 59.870 57.895 0.00 0.00 0.00 3.18
71 72 2.707849 TACTCCGACAGGGCTTCGC 61.708 63.158 0.00 0.00 38.33 4.70
72 73 1.139095 GTACTCCGACAGGGCTTCG 59.861 63.158 0.00 0.00 38.33 3.79
73 74 0.173708 CAGTACTCCGACAGGGCTTC 59.826 60.000 0.00 0.00 38.33 3.86
74 75 1.889530 GCAGTACTCCGACAGGGCTT 61.890 60.000 0.00 0.00 38.33 4.35
75 76 2.352032 GCAGTACTCCGACAGGGCT 61.352 63.158 0.00 0.00 38.33 5.19
76 77 2.184579 GCAGTACTCCGACAGGGC 59.815 66.667 0.00 0.00 38.33 5.19
77 78 1.513158 CAGCAGTACTCCGACAGGG 59.487 63.158 0.00 0.00 38.33 4.45
78 79 1.153745 GCAGCAGTACTCCGACAGG 60.154 63.158 0.00 0.00 39.46 4.00
79 80 0.734253 GTGCAGCAGTACTCCGACAG 60.734 60.000 0.00 0.00 0.00 3.51
80 81 1.289066 GTGCAGCAGTACTCCGACA 59.711 57.895 0.00 0.00 0.00 4.35
81 82 1.446272 GGTGCAGCAGTACTCCGAC 60.446 63.158 11.86 0.00 0.00 4.79
82 83 1.468506 TTGGTGCAGCAGTACTCCGA 61.469 55.000 19.25 0.00 0.00 4.55
83 84 1.005037 TTGGTGCAGCAGTACTCCG 60.005 57.895 19.25 0.00 0.00 4.63
84 85 0.250295 TGTTGGTGCAGCAGTACTCC 60.250 55.000 19.25 0.00 0.00 3.85
85 86 0.868406 GTGTTGGTGCAGCAGTACTC 59.132 55.000 19.25 12.22 0.00 2.59
86 87 0.535102 GGTGTTGGTGCAGCAGTACT 60.535 55.000 24.29 0.00 36.91 2.73
87 88 0.817634 TGGTGTTGGTGCAGCAGTAC 60.818 55.000 19.25 19.69 41.24 2.73
88 89 0.817634 GTGGTGTTGGTGCAGCAGTA 60.818 55.000 19.25 9.29 45.78 2.74
89 90 2.120909 GTGGTGTTGGTGCAGCAGT 61.121 57.895 19.25 0.00 45.78 4.40
90 91 2.723746 GTGGTGTTGGTGCAGCAG 59.276 61.111 19.25 0.00 45.78 4.24
91 92 2.832661 GGTGGTGTTGGTGCAGCA 60.833 61.111 15.99 15.99 43.46 4.41
92 93 2.832661 TGGTGGTGTTGGTGCAGC 60.833 61.111 9.47 9.47 37.38 5.25
93 94 2.833533 CGTGGTGGTGTTGGTGCAG 61.834 63.158 0.00 0.00 0.00 4.41
94 95 2.826287 CGTGGTGGTGTTGGTGCA 60.826 61.111 0.00 0.00 0.00 4.57
95 96 4.264638 GCGTGGTGGTGTTGGTGC 62.265 66.667 0.00 0.00 0.00 5.01
96 97 3.591835 GGCGTGGTGGTGTTGGTG 61.592 66.667 0.00 0.00 0.00 4.17
99 100 3.645975 GACGGCGTGGTGGTGTTG 61.646 66.667 21.19 0.00 0.00 3.33
117 118 2.533391 GATTGCTCCAACCGCAGCAC 62.533 60.000 0.00 0.00 45.37 4.40
118 119 2.282391 ATTGCTCCAACCGCAGCA 60.282 55.556 0.00 0.00 44.02 4.41
119 120 1.589716 AAGATTGCTCCAACCGCAGC 61.590 55.000 0.00 0.00 38.80 5.25
120 121 0.449388 GAAGATTGCTCCAACCGCAG 59.551 55.000 0.00 0.00 38.80 5.18
121 122 0.960364 GGAAGATTGCTCCAACCGCA 60.960 55.000 0.00 0.00 35.22 5.69
122 123 0.678048 AGGAAGATTGCTCCAACCGC 60.678 55.000 0.00 0.00 0.00 5.68
123 124 1.339055 TGAGGAAGATTGCTCCAACCG 60.339 52.381 11.02 0.00 44.00 4.44
124 125 2.489722 GTTGAGGAAGATTGCTCCAACC 59.510 50.000 11.02 0.00 44.00 3.77
125 126 2.489722 GGTTGAGGAAGATTGCTCCAAC 59.510 50.000 11.02 13.29 44.00 3.77
126 127 2.376518 AGGTTGAGGAAGATTGCTCCAA 59.623 45.455 11.02 3.97 44.00 3.53
127 128 1.988107 AGGTTGAGGAAGATTGCTCCA 59.012 47.619 11.02 0.00 44.00 3.86
128 129 2.238395 AGAGGTTGAGGAAGATTGCTCC 59.762 50.000 11.02 0.00 44.00 4.70
129 130 3.530535 GAGAGGTTGAGGAAGATTGCTC 58.469 50.000 7.11 7.11 44.76 4.26
130 131 2.238395 GGAGAGGTTGAGGAAGATTGCT 59.762 50.000 0.00 0.00 0.00 3.91
131 132 2.238395 AGGAGAGGTTGAGGAAGATTGC 59.762 50.000 0.00 0.00 0.00 3.56
132 133 4.512484 GAAGGAGAGGTTGAGGAAGATTG 58.488 47.826 0.00 0.00 0.00 2.67
133 134 3.521531 GGAAGGAGAGGTTGAGGAAGATT 59.478 47.826 0.00 0.00 0.00 2.40
134 135 3.111484 GGAAGGAGAGGTTGAGGAAGAT 58.889 50.000 0.00 0.00 0.00 2.40
135 136 2.112691 AGGAAGGAGAGGTTGAGGAAGA 59.887 50.000 0.00 0.00 0.00 2.87
136 137 2.499693 GAGGAAGGAGAGGTTGAGGAAG 59.500 54.545 0.00 0.00 0.00 3.46
137 138 2.541466 GAGGAAGGAGAGGTTGAGGAA 58.459 52.381 0.00 0.00 0.00 3.36
138 139 1.273324 GGAGGAAGGAGAGGTTGAGGA 60.273 57.143 0.00 0.00 0.00 3.71
139 140 1.199615 GGAGGAAGGAGAGGTTGAGG 58.800 60.000 0.00 0.00 0.00 3.86
140 141 2.235898 CAAGGAGGAAGGAGAGGTTGAG 59.764 54.545 0.00 0.00 0.00 3.02
141 142 2.260822 CAAGGAGGAAGGAGAGGTTGA 58.739 52.381 0.00 0.00 0.00 3.18
142 143 1.339535 GCAAGGAGGAAGGAGAGGTTG 60.340 57.143 0.00 0.00 0.00 3.77
143 144 0.988063 GCAAGGAGGAAGGAGAGGTT 59.012 55.000 0.00 0.00 0.00 3.50
144 145 0.118144 AGCAAGGAGGAAGGAGAGGT 59.882 55.000 0.00 0.00 0.00 3.85
145 146 0.540923 CAGCAAGGAGGAAGGAGAGG 59.459 60.000 0.00 0.00 0.00 3.69
146 147 0.540923 CCAGCAAGGAGGAAGGAGAG 59.459 60.000 0.00 0.00 41.22 3.20
147 148 0.117140 TCCAGCAAGGAGGAAGGAGA 59.883 55.000 0.00 0.00 43.07 3.71
148 149 2.689073 TCCAGCAAGGAGGAAGGAG 58.311 57.895 0.00 0.00 43.07 3.69
149 150 4.998839 TCCAGCAAGGAGGAAGGA 57.001 55.556 0.00 0.00 43.07 3.36
157 158 2.630158 CTCTGTCTTGATCCAGCAAGG 58.370 52.381 4.79 0.00 44.14 3.61
158 159 2.235650 TCCTCTGTCTTGATCCAGCAAG 59.764 50.000 0.00 0.00 45.10 4.01
159 160 2.235650 CTCCTCTGTCTTGATCCAGCAA 59.764 50.000 0.00 0.00 0.00 3.91
160 161 1.829849 CTCCTCTGTCTTGATCCAGCA 59.170 52.381 0.00 0.00 0.00 4.41
161 162 2.106566 TCTCCTCTGTCTTGATCCAGC 58.893 52.381 0.00 0.00 0.00 4.85
162 163 2.098934 CGTCTCCTCTGTCTTGATCCAG 59.901 54.545 0.00 0.00 0.00 3.86
163 164 2.095461 CGTCTCCTCTGTCTTGATCCA 58.905 52.381 0.00 0.00 0.00 3.41
164 165 2.096248 ACGTCTCCTCTGTCTTGATCC 58.904 52.381 0.00 0.00 0.00 3.36
165 166 2.223157 CGACGTCTCCTCTGTCTTGATC 60.223 54.545 14.70 0.00 0.00 2.92
166 167 1.740585 CGACGTCTCCTCTGTCTTGAT 59.259 52.381 14.70 0.00 0.00 2.57
167 168 1.157585 CGACGTCTCCTCTGTCTTGA 58.842 55.000 14.70 0.00 0.00 3.02
168 169 0.875728 ACGACGTCTCCTCTGTCTTG 59.124 55.000 14.70 0.00 0.00 3.02
169 170 1.158434 GACGACGTCTCCTCTGTCTT 58.842 55.000 20.52 0.00 0.00 3.01
170 171 0.674269 GGACGACGTCTCCTCTGTCT 60.674 60.000 25.87 0.00 32.47 3.41
171 172 1.795507 GGACGACGTCTCCTCTGTC 59.204 63.158 25.87 15.39 32.47 3.51
172 173 2.033755 CGGACGACGTCTCCTCTGT 61.034 63.158 25.87 10.79 37.93 3.41
173 174 2.785921 CGGACGACGTCTCCTCTG 59.214 66.667 25.87 13.11 37.93 3.35
190 191 0.854705 GTTCAACACACGTACGGGAC 59.145 55.000 27.01 6.79 0.00 4.46
191 192 0.594540 CGTTCAACACACGTACGGGA 60.595 55.000 27.01 6.23 32.80 5.14
192 193 1.847975 CGTTCAACACACGTACGGG 59.152 57.895 17.69 17.69 32.80 5.28
193 194 1.199859 GCGTTCAACACACGTACGG 59.800 57.895 21.06 11.05 39.92 4.02
194 195 1.155158 CGCGTTCAACACACGTACG 60.155 57.895 15.01 15.01 39.92 3.67
195 196 1.199859 CCGCGTTCAACACACGTAC 59.800 57.895 4.92 0.00 39.92 3.67
196 197 0.935831 CTCCGCGTTCAACACACGTA 60.936 55.000 4.92 0.00 39.92 3.57
197 198 2.202770 TCCGCGTTCAACACACGT 60.203 55.556 4.92 0.00 39.92 4.49
198 199 2.544359 CTCCGCGTTCAACACACG 59.456 61.111 4.92 0.00 40.75 4.49
199 200 1.885850 ACCTCCGCGTTCAACACAC 60.886 57.895 4.92 0.00 0.00 3.82
200 201 1.885388 CACCTCCGCGTTCAACACA 60.885 57.895 4.92 0.00 0.00 3.72
201 202 2.935955 CACCTCCGCGTTCAACAC 59.064 61.111 4.92 0.00 0.00 3.32
202 203 2.970324 GCACCTCCGCGTTCAACA 60.970 61.111 4.92 0.00 0.00 3.33
203 204 2.665185 AGCACCTCCGCGTTCAAC 60.665 61.111 4.92 0.00 36.85 3.18
204 205 2.664851 CAGCACCTCCGCGTTCAA 60.665 61.111 4.92 0.00 36.85 2.69
205 206 3.858868 GACAGCACCTCCGCGTTCA 62.859 63.158 4.92 0.00 36.85 3.18
206 207 3.112709 GACAGCACCTCCGCGTTC 61.113 66.667 4.92 0.00 36.85 3.95
207 208 4.681978 GGACAGCACCTCCGCGTT 62.682 66.667 4.92 0.00 36.85 4.84
209 210 3.883744 AAAGGACAGCACCTCCGCG 62.884 63.158 0.00 0.00 39.62 6.46
210 211 2.032681 AAAGGACAGCACCTCCGC 59.967 61.111 0.00 0.00 39.62 5.54
211 212 0.671781 CTGAAAGGACAGCACCTCCG 60.672 60.000 0.00 0.00 39.62 4.63
212 213 3.239861 CTGAAAGGACAGCACCTCC 57.760 57.895 0.00 0.00 39.62 4.30
222 223 2.783135 GATGACCAAGTGCTGAAAGGA 58.217 47.619 0.00 0.00 0.00 3.36
223 224 1.466167 CGATGACCAAGTGCTGAAAGG 59.534 52.381 0.00 0.00 0.00 3.11
224 225 1.466167 CCGATGACCAAGTGCTGAAAG 59.534 52.381 0.00 0.00 0.00 2.62
225 226 1.202758 ACCGATGACCAAGTGCTGAAA 60.203 47.619 0.00 0.00 0.00 2.69
226 227 0.396435 ACCGATGACCAAGTGCTGAA 59.604 50.000 0.00 0.00 0.00 3.02
227 228 0.320683 CACCGATGACCAAGTGCTGA 60.321 55.000 0.00 0.00 0.00 4.26
228 229 0.320683 TCACCGATGACCAAGTGCTG 60.321 55.000 0.00 0.00 0.00 4.41
229 230 0.615331 ATCACCGATGACCAAGTGCT 59.385 50.000 0.00 0.00 37.79 4.40
230 231 1.009829 GATCACCGATGACCAAGTGC 58.990 55.000 0.00 0.00 37.79 4.40
231 232 2.094026 TCAGATCACCGATGACCAAGTG 60.094 50.000 0.00 0.00 37.79 3.16
232 233 2.179427 TCAGATCACCGATGACCAAGT 58.821 47.619 0.00 0.00 37.79 3.16
233 234 2.967599 TCAGATCACCGATGACCAAG 57.032 50.000 0.00 0.00 37.79 3.61
234 235 3.197549 TGATTCAGATCACCGATGACCAA 59.802 43.478 0.00 0.00 37.37 3.67
235 236 2.765699 TGATTCAGATCACCGATGACCA 59.234 45.455 0.00 0.00 37.37 4.02
236 237 3.459232 TGATTCAGATCACCGATGACC 57.541 47.619 0.00 0.00 37.37 4.02
245 246 0.817654 ACTCGCCGTGATTCAGATCA 59.182 50.000 0.00 0.00 39.92 2.92
246 247 2.386249 GTACTCGCCGTGATTCAGATC 58.614 52.381 0.00 0.00 0.00 2.75
247 248 1.268589 CGTACTCGCCGTGATTCAGAT 60.269 52.381 0.00 0.00 0.00 2.90
248 249 0.098200 CGTACTCGCCGTGATTCAGA 59.902 55.000 0.00 0.00 0.00 3.27
249 250 0.098200 TCGTACTCGCCGTGATTCAG 59.902 55.000 0.00 0.00 36.96 3.02
250 251 0.179181 GTCGTACTCGCCGTGATTCA 60.179 55.000 0.00 0.00 36.96 2.57
251 252 0.098376 AGTCGTACTCGCCGTGATTC 59.902 55.000 0.00 0.00 36.96 2.52
252 253 0.098376 GAGTCGTACTCGCCGTGATT 59.902 55.000 0.00 0.00 35.28 2.57
253 254 1.712977 GGAGTCGTACTCGCCGTGAT 61.713 60.000 8.33 0.00 45.96 3.06
254 255 2.393768 GGAGTCGTACTCGCCGTGA 61.394 63.158 8.33 0.00 45.96 4.35
255 256 1.989966 ATGGAGTCGTACTCGCCGTG 61.990 60.000 8.33 0.00 45.96 4.94
256 257 1.712977 GATGGAGTCGTACTCGCCGT 61.713 60.000 8.33 3.07 45.96 5.68
257 258 1.009900 GATGGAGTCGTACTCGCCG 60.010 63.158 8.33 0.00 45.96 6.46
258 259 0.669077 ATGATGGAGTCGTACTCGCC 59.331 55.000 8.33 0.00 45.96 5.54
259 260 1.333931 TGATGATGGAGTCGTACTCGC 59.666 52.381 8.33 3.96 45.96 5.03
260 261 2.287069 GGTGATGATGGAGTCGTACTCG 60.287 54.545 8.33 0.00 45.96 4.18
261 262 2.034812 GGGTGATGATGGAGTCGTACTC 59.965 54.545 6.50 6.50 44.32 2.59
262 263 2.032620 GGGTGATGATGGAGTCGTACT 58.967 52.381 0.00 0.00 0.00 2.73
263 264 2.032620 AGGGTGATGATGGAGTCGTAC 58.967 52.381 0.00 0.00 0.00 3.67
264 265 2.454336 AGGGTGATGATGGAGTCGTA 57.546 50.000 0.00 0.00 0.00 3.43
265 266 1.482593 GAAGGGTGATGATGGAGTCGT 59.517 52.381 0.00 0.00 0.00 4.34
266 267 1.202580 GGAAGGGTGATGATGGAGTCG 60.203 57.143 0.00 0.00 0.00 4.18
267 268 1.141858 GGGAAGGGTGATGATGGAGTC 59.858 57.143 0.00 0.00 0.00 3.36
268 269 1.216990 GGGAAGGGTGATGATGGAGT 58.783 55.000 0.00 0.00 0.00 3.85
269 270 1.516110 AGGGAAGGGTGATGATGGAG 58.484 55.000 0.00 0.00 0.00 3.86
270 271 1.565759 CAAGGGAAGGGTGATGATGGA 59.434 52.381 0.00 0.00 0.00 3.41
271 272 1.565759 TCAAGGGAAGGGTGATGATGG 59.434 52.381 0.00 0.00 0.00 3.51
272 273 3.019564 GTTCAAGGGAAGGGTGATGATG 58.980 50.000 0.00 0.00 32.62 3.07
273 274 2.356125 CGTTCAAGGGAAGGGTGATGAT 60.356 50.000 0.00 0.00 35.73 2.45
274 275 1.003118 CGTTCAAGGGAAGGGTGATGA 59.997 52.381 0.00 0.00 35.73 2.92
275 276 1.453155 CGTTCAAGGGAAGGGTGATG 58.547 55.000 0.00 0.00 35.73 3.07
276 277 0.322546 GCGTTCAAGGGAAGGGTGAT 60.323 55.000 0.00 0.00 38.89 3.06
277 278 1.072505 GCGTTCAAGGGAAGGGTGA 59.927 57.895 0.00 0.00 38.89 4.02
278 279 0.537371 AAGCGTTCAAGGGAAGGGTG 60.537 55.000 3.10 0.00 45.66 4.61
279 280 3.576232 AGCGTTCAAGGGAAGGGT 58.424 55.556 0.00 0.00 42.75 4.34
280 281 0.036875 AGAAGCGTTCAAGGGAAGGG 59.963 55.000 0.00 0.00 38.89 3.95
281 282 1.160137 CAGAAGCGTTCAAGGGAAGG 58.840 55.000 0.00 0.00 40.86 3.46
282 283 0.519077 GCAGAAGCGTTCAAGGGAAG 59.481 55.000 1.58 0.00 32.62 3.46
283 284 0.179032 TGCAGAAGCGTTCAAGGGAA 60.179 50.000 0.00 0.00 46.23 3.97
284 285 0.884704 GTGCAGAAGCGTTCAAGGGA 60.885 55.000 0.00 0.00 46.23 4.20
285 286 1.576421 GTGCAGAAGCGTTCAAGGG 59.424 57.895 0.00 0.00 46.23 3.95
286 287 1.205064 CGTGCAGAAGCGTTCAAGG 59.795 57.895 0.00 0.00 46.23 3.61
287 288 1.439365 GCGTGCAGAAGCGTTCAAG 60.439 57.895 0.00 0.00 46.23 3.02
288 289 2.631428 GCGTGCAGAAGCGTTCAA 59.369 55.556 0.00 0.00 46.23 2.69
294 295 0.802222 TGTAGATCGCGTGCAGAAGC 60.802 55.000 5.77 0.00 42.57 3.86
295 296 1.585668 CTTGTAGATCGCGTGCAGAAG 59.414 52.381 5.77 0.76 0.00 2.85
296 297 1.067846 ACTTGTAGATCGCGTGCAGAA 60.068 47.619 5.77 0.00 0.00 3.02
297 298 0.526211 ACTTGTAGATCGCGTGCAGA 59.474 50.000 5.77 0.00 0.00 4.26
298 299 0.642291 CACTTGTAGATCGCGTGCAG 59.358 55.000 5.77 0.00 0.00 4.41
299 300 0.735978 CCACTTGTAGATCGCGTGCA 60.736 55.000 5.77 0.00 0.00 4.57
300 301 0.736325 ACCACTTGTAGATCGCGTGC 60.736 55.000 5.77 0.00 0.00 5.34
301 302 2.554806 TACCACTTGTAGATCGCGTG 57.445 50.000 5.77 0.00 0.00 5.34
302 303 2.426024 ACATACCACTTGTAGATCGCGT 59.574 45.455 5.77 0.00 31.61 6.01
303 304 3.079960 ACATACCACTTGTAGATCGCG 57.920 47.619 0.00 0.00 31.61 5.87
304 305 5.434352 TCTACATACCACTTGTAGATCGC 57.566 43.478 8.96 0.00 46.52 4.58
309 310 6.818644 AGTTTGCATCTACATACCACTTGTAG 59.181 38.462 4.81 4.81 45.12 2.74
310 311 6.707290 AGTTTGCATCTACATACCACTTGTA 58.293 36.000 0.00 0.00 0.00 2.41
311 312 5.560724 AGTTTGCATCTACATACCACTTGT 58.439 37.500 0.00 0.00 0.00 3.16
312 313 5.643348 TGAGTTTGCATCTACATACCACTTG 59.357 40.000 0.00 0.00 0.00 3.16
313 314 5.643777 GTGAGTTTGCATCTACATACCACTT 59.356 40.000 0.00 0.00 0.00 3.16
314 315 5.046304 AGTGAGTTTGCATCTACATACCACT 60.046 40.000 0.00 0.00 33.12 4.00
315 316 5.178797 AGTGAGTTTGCATCTACATACCAC 58.821 41.667 0.00 0.00 0.00 4.16
316 317 5.419542 GAGTGAGTTTGCATCTACATACCA 58.580 41.667 0.00 0.00 0.00 3.25
317 318 4.811557 GGAGTGAGTTTGCATCTACATACC 59.188 45.833 0.00 0.00 0.00 2.73
318 319 4.811557 GGGAGTGAGTTTGCATCTACATAC 59.188 45.833 0.00 0.00 0.00 2.39
319 320 4.716784 AGGGAGTGAGTTTGCATCTACATA 59.283 41.667 0.00 0.00 0.00 2.29
320 321 3.521126 AGGGAGTGAGTTTGCATCTACAT 59.479 43.478 0.00 0.00 0.00 2.29
321 322 2.906389 AGGGAGTGAGTTTGCATCTACA 59.094 45.455 0.00 0.00 0.00 2.74
322 323 3.618690 AGGGAGTGAGTTTGCATCTAC 57.381 47.619 0.00 0.00 0.00 2.59
323 324 3.582647 TCAAGGGAGTGAGTTTGCATCTA 59.417 43.478 0.00 0.00 0.00 1.98
324 325 2.373169 TCAAGGGAGTGAGTTTGCATCT 59.627 45.455 0.00 0.00 0.00 2.90
325 326 2.485814 GTCAAGGGAGTGAGTTTGCATC 59.514 50.000 0.00 0.00 0.00 3.91
326 327 2.107204 AGTCAAGGGAGTGAGTTTGCAT 59.893 45.455 0.00 0.00 0.00 3.96
327 328 1.490490 AGTCAAGGGAGTGAGTTTGCA 59.510 47.619 0.00 0.00 0.00 4.08
328 329 2.147150 GAGTCAAGGGAGTGAGTTTGC 58.853 52.381 0.00 0.00 31.14 3.68
329 330 2.224066 ACGAGTCAAGGGAGTGAGTTTG 60.224 50.000 0.00 0.00 31.14 2.93
330 331 2.040178 ACGAGTCAAGGGAGTGAGTTT 58.960 47.619 0.00 0.00 31.14 2.66
331 332 1.705873 ACGAGTCAAGGGAGTGAGTT 58.294 50.000 0.00 0.00 31.14 3.01
332 333 1.341531 CAACGAGTCAAGGGAGTGAGT 59.658 52.381 0.00 0.00 33.76 3.41
333 334 1.613925 TCAACGAGTCAAGGGAGTGAG 59.386 52.381 0.00 0.00 0.00 3.51
334 335 1.699730 TCAACGAGTCAAGGGAGTGA 58.300 50.000 0.00 0.00 0.00 3.41
335 336 2.751166 ATCAACGAGTCAAGGGAGTG 57.249 50.000 0.00 0.00 0.00 3.51
336 337 4.087182 TCTAATCAACGAGTCAAGGGAGT 58.913 43.478 0.00 0.00 0.00 3.85
337 338 4.720649 TCTAATCAACGAGTCAAGGGAG 57.279 45.455 0.00 0.00 0.00 4.30
338 339 4.709886 TCATCTAATCAACGAGTCAAGGGA 59.290 41.667 0.00 0.00 0.00 4.20
339 340 5.011090 TCATCTAATCAACGAGTCAAGGG 57.989 43.478 0.00 0.00 0.00 3.95
340 341 6.102663 AGTTCATCTAATCAACGAGTCAAGG 58.897 40.000 0.00 0.00 0.00 3.61
341 342 6.808704 TGAGTTCATCTAATCAACGAGTCAAG 59.191 38.462 0.00 0.00 0.00 3.02
342 343 6.687604 TGAGTTCATCTAATCAACGAGTCAA 58.312 36.000 0.00 0.00 0.00 3.18
343 344 6.267496 TGAGTTCATCTAATCAACGAGTCA 57.733 37.500 0.00 0.00 0.00 3.41
344 345 8.346300 TCTATGAGTTCATCTAATCAACGAGTC 58.654 37.037 0.00 0.00 37.76 3.36
345 346 8.226819 TCTATGAGTTCATCTAATCAACGAGT 57.773 34.615 0.00 0.00 37.76 4.18
346 347 9.127006 CATCTATGAGTTCATCTAATCAACGAG 57.873 37.037 0.00 0.00 37.76 4.18
347 348 8.084684 CCATCTATGAGTTCATCTAATCAACGA 58.915 37.037 0.00 0.00 37.76 3.85
348 349 8.084684 TCCATCTATGAGTTCATCTAATCAACG 58.915 37.037 0.00 0.00 37.76 4.10
349 350 9.941325 ATCCATCTATGAGTTCATCTAATCAAC 57.059 33.333 0.00 0.00 37.76 3.18
351 352 9.544579 AGATCCATCTATGAGTTCATCTAATCA 57.455 33.333 0.00 0.00 37.76 2.57
354 355 8.591940 CCAAGATCCATCTATGAGTTCATCTAA 58.408 37.037 0.00 0.00 35.76 2.10
355 356 7.732140 ACCAAGATCCATCTATGAGTTCATCTA 59.268 37.037 0.00 0.00 35.76 1.98
356 357 6.558014 ACCAAGATCCATCTATGAGTTCATCT 59.442 38.462 0.00 0.00 35.76 2.90
357 358 6.649973 CACCAAGATCCATCTATGAGTTCATC 59.350 42.308 0.00 0.00 35.76 2.92
358 359 6.328410 TCACCAAGATCCATCTATGAGTTCAT 59.672 38.462 0.00 0.00 35.76 2.57
359 360 5.662657 TCACCAAGATCCATCTATGAGTTCA 59.337 40.000 0.00 0.00 35.76 3.18
360 361 6.166984 TCACCAAGATCCATCTATGAGTTC 57.833 41.667 0.00 0.00 35.76 3.01
361 362 6.566079 TTCACCAAGATCCATCTATGAGTT 57.434 37.500 0.00 0.00 35.76 3.01
362 363 6.352516 GTTTCACCAAGATCCATCTATGAGT 58.647 40.000 0.00 0.00 35.76 3.41
363 364 5.762218 GGTTTCACCAAGATCCATCTATGAG 59.238 44.000 0.00 0.00 38.42 2.90
364 365 5.684704 GGTTTCACCAAGATCCATCTATGA 58.315 41.667 0.00 0.00 38.42 2.15
365 366 4.512944 CGGTTTCACCAAGATCCATCTATG 59.487 45.833 0.00 0.00 38.47 2.23
366 367 4.164221 ACGGTTTCACCAAGATCCATCTAT 59.836 41.667 0.00 0.00 38.47 1.98
367 368 3.517901 ACGGTTTCACCAAGATCCATCTA 59.482 43.478 0.00 0.00 38.47 1.98
368 369 2.305927 ACGGTTTCACCAAGATCCATCT 59.694 45.455 0.00 0.00 38.47 2.90
369 370 2.711542 ACGGTTTCACCAAGATCCATC 58.288 47.619 0.00 0.00 38.47 3.51
370 371 2.879103 ACGGTTTCACCAAGATCCAT 57.121 45.000 0.00 0.00 38.47 3.41
371 372 2.901192 TCTACGGTTTCACCAAGATCCA 59.099 45.455 0.00 0.00 38.47 3.41
372 373 3.604875 TCTACGGTTTCACCAAGATCC 57.395 47.619 0.00 0.00 38.47 3.36
373 374 5.934935 TTTTCTACGGTTTCACCAAGATC 57.065 39.130 0.00 0.00 38.47 2.75
374 375 6.894339 AATTTTCTACGGTTTCACCAAGAT 57.106 33.333 0.00 0.00 38.47 2.40
375 376 6.702716 AAATTTTCTACGGTTTCACCAAGA 57.297 33.333 0.00 0.00 38.47 3.02
376 377 7.764695 AAAAATTTTCTACGGTTTCACCAAG 57.235 32.000 3.41 0.00 38.47 3.61
397 398 8.230472 TGGGGAACGTTGTAGTAAATTAAAAA 57.770 30.769 5.00 0.00 0.00 1.94
398 399 7.814264 TGGGGAACGTTGTAGTAAATTAAAA 57.186 32.000 5.00 0.00 0.00 1.52
399 400 7.284034 TGTTGGGGAACGTTGTAGTAAATTAAA 59.716 33.333 5.00 0.00 0.00 1.52
400 401 6.769822 TGTTGGGGAACGTTGTAGTAAATTAA 59.230 34.615 5.00 0.00 0.00 1.40
401 402 6.204495 GTGTTGGGGAACGTTGTAGTAAATTA 59.796 38.462 5.00 0.00 0.00 1.40
402 403 5.008911 GTGTTGGGGAACGTTGTAGTAAATT 59.991 40.000 5.00 0.00 0.00 1.82
403 404 4.516321 GTGTTGGGGAACGTTGTAGTAAAT 59.484 41.667 5.00 0.00 0.00 1.40
404 405 3.876320 GTGTTGGGGAACGTTGTAGTAAA 59.124 43.478 5.00 0.00 0.00 2.01
405 406 3.134442 AGTGTTGGGGAACGTTGTAGTAA 59.866 43.478 5.00 0.00 0.00 2.24
406 407 2.699846 AGTGTTGGGGAACGTTGTAGTA 59.300 45.455 5.00 0.00 0.00 1.82
407 408 1.487558 AGTGTTGGGGAACGTTGTAGT 59.512 47.619 5.00 0.00 0.00 2.73
408 409 2.249844 AGTGTTGGGGAACGTTGTAG 57.750 50.000 5.00 0.00 0.00 2.74
409 410 2.563702 GAAGTGTTGGGGAACGTTGTA 58.436 47.619 5.00 0.00 0.00 2.41
410 411 1.385528 GAAGTGTTGGGGAACGTTGT 58.614 50.000 5.00 0.00 0.00 3.32
411 412 0.666374 GGAAGTGTTGGGGAACGTTG 59.334 55.000 5.00 0.00 0.00 4.10
412 413 0.816421 CGGAAGTGTTGGGGAACGTT 60.816 55.000 0.00 0.00 0.00 3.99
413 414 1.227734 CGGAAGTGTTGGGGAACGT 60.228 57.895 0.00 0.00 0.00 3.99
414 415 1.227734 ACGGAAGTGTTGGGGAACG 60.228 57.895 0.00 0.00 46.97 3.95
415 416 4.892002 ACGGAAGTGTTGGGGAAC 57.108 55.556 0.00 0.00 46.97 3.62
421 422 4.465673 CCGAAGGTATGACGGAAGTGTTG 61.466 52.174 0.00 0.00 46.29 3.33
422 423 2.353406 CCGAAGGTATGACGGAAGTGTT 60.353 50.000 0.00 0.00 46.29 3.32
423 424 1.203994 CCGAAGGTATGACGGAAGTGT 59.796 52.381 0.00 0.00 46.29 3.55
424 425 1.922570 CCGAAGGTATGACGGAAGTG 58.077 55.000 0.00 0.00 46.29 3.16
448 449 3.118112 CACTCCCATTACTTGAGCTCCAT 60.118 47.826 12.15 0.00 0.00 3.41
460 461 4.701651 CACTCAAGCAATTCACTCCCATTA 59.298 41.667 0.00 0.00 0.00 1.90
468 469 4.168760 GGCAATACACTCAAGCAATTCAC 58.831 43.478 0.00 0.00 0.00 3.18
499 500 1.987080 AATTAGGCTCAAGGGAGGGT 58.013 50.000 0.00 0.00 41.67 4.34
515 516 2.163010 CGAGATGCCAAGACAGCAAATT 59.837 45.455 0.00 0.00 44.83 1.82
519 520 0.108472 CTCGAGATGCCAAGACAGCA 60.108 55.000 6.58 0.00 45.94 4.41
605 607 2.158957 TGATCTCCCAAAGCACCGATAC 60.159 50.000 0.00 0.00 0.00 2.24
726 728 1.275010 GTACCAAACAAATGGGGCAGG 59.725 52.381 0.00 0.00 45.18 4.85
782 784 4.379243 CCAGAGGAACTGCGCCGT 62.379 66.667 4.18 0.00 44.52 5.68
801 803 2.231380 AACCACCTCCCGGAAGCAT 61.231 57.895 0.73 0.00 0.00 3.79
846 849 0.688487 CCTACCCAAACAAGTCCGGA 59.312 55.000 0.00 0.00 0.00 5.14
862 865 0.264955 CTGGGGAGCCTAAGGACCTA 59.735 60.000 0.00 0.00 0.00 3.08
1002 1005 2.037136 ATTCAGCTGCGTCTGCCAC 61.037 57.895 9.47 0.00 41.78 5.01
1188 1237 5.455899 GGAACCAATCTCATCCAATAGAGCT 60.456 44.000 0.00 0.00 32.08 4.09
1467 2210 9.587772 CTAACAGCATACATAAAGACTAAGTGT 57.412 33.333 0.00 0.00 0.00 3.55
1468 2211 9.803315 TCTAACAGCATACATAAAGACTAAGTG 57.197 33.333 0.00 0.00 0.00 3.16
1966 2717 9.847224 GGACCAAGAAATAATACTTCCAGATTA 57.153 33.333 0.00 0.00 0.00 1.75
2002 2757 4.695455 GCCATGTTGCTAGTTTACTCAGAA 59.305 41.667 0.00 0.00 0.00 3.02
2021 2780 2.584835 TGCTTCACCTTTAGTGCCAT 57.415 45.000 0.00 0.00 46.81 4.40
2192 3016 7.451255 TGATGTGAACCAATGAATACCTCTTTT 59.549 33.333 0.00 0.00 0.00 2.27
2201 3025 7.121382 AGTTCCTATGATGTGAACCAATGAAT 58.879 34.615 5.61 0.00 39.30 2.57
2520 3349 6.271488 TCTGGTTGGCTTATCAATTTCAAG 57.729 37.500 0.00 0.00 0.00 3.02
2590 3419 5.104900 ACTGTAATAAGCAGGTAGAGTTGGG 60.105 44.000 0.00 0.00 38.22 4.12
2639 3468 6.036300 TGTTTGTTTGTACGTAGAAGAGTTGG 59.964 38.462 5.23 0.00 0.00 3.77
2679 3508 3.956199 CAGATTGATATTGGTTGGGCAGT 59.044 43.478 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.