Multiple sequence alignment - TraesCS2B01G035000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G035000 chr2B 100.000 3965 0 0 1 3965 16908712 16904748 0.000000e+00 7323.0
1 TraesCS2B01G035000 chr2B 97.071 1912 56 0 367 2278 16931633 16929722 0.000000e+00 3221.0
2 TraesCS2B01G035000 chr2B 96.683 1869 62 0 1 1869 16933511 16931643 0.000000e+00 3109.0
3 TraesCS2B01G035000 chr2B 90.192 520 44 3 3448 3965 734783399 734783913 0.000000e+00 671.0
4 TraesCS2B01G035000 chr2B 83.571 560 67 18 1120 1675 88886302 88886840 5.920000e-138 501.0
5 TraesCS2B01G035000 chr2B 94.400 250 12 2 2276 2525 181755293 181755046 2.240000e-102 383.0
6 TraesCS2B01G035000 chr2B 92.453 265 17 3 2274 2537 202864073 202863811 3.740000e-100 375.0
7 TraesCS2B01G035000 chr2B 96.891 193 6 0 2513 2705 16929724 16929532 1.370000e-84 324.0
8 TraesCS2B01G035000 chr2B 87.097 186 24 0 2092 2277 38256045 38255860 1.120000e-50 211.0
9 TraesCS2B01G035000 chr4A 96.181 2278 84 3 1 2278 704480973 704478699 0.000000e+00 3722.0
10 TraesCS2B01G035000 chr4A 96.539 809 21 3 2513 3314 704478701 704477893 0.000000e+00 1332.0
11 TraesCS2B01G035000 chr4A 96.635 624 21 0 3342 3965 704477538 704476915 0.000000e+00 1037.0
12 TraesCS2B01G035000 chr4A 89.251 521 48 4 3448 3965 34538050 34538565 0.000000e+00 645.0
13 TraesCS2B01G035000 chr4A 85.556 270 18 4 1 270 473520758 473520510 3.040000e-66 263.0
14 TraesCS2B01G035000 chr4A 83.643 269 23 5 2 270 473522501 473522254 2.380000e-57 233.0
15 TraesCS2B01G035000 chr4A 92.857 42 3 0 390 431 733464737 733464696 1.190000e-05 62.1
16 TraesCS2B01G035000 chr5A 96.059 1903 72 3 378 2278 32103308 32105209 0.000000e+00 3096.0
17 TraesCS2B01G035000 chr5A 94.745 1903 66 12 378 2278 30784422 30782552 0.000000e+00 2929.0
18 TraesCS2B01G035000 chr5A 94.970 835 32 5 2513 3337 30782554 30781720 0.000000e+00 1301.0
19 TraesCS2B01G035000 chr5A 95.197 812 29 5 2513 3314 32105207 32106018 0.000000e+00 1275.0
20 TraesCS2B01G035000 chr5A 96.719 640 21 0 3326 3965 30780968 30780329 0.000000e+00 1066.0
21 TraesCS2B01G035000 chr5A 91.398 186 10 2 3158 3337 30781222 30781037 2.370000e-62 250.0
22 TraesCS2B01G035000 chr5A 90.608 181 10 2 90 270 680691426 680691253 2.380000e-57 233.0
23 TraesCS2B01G035000 chr5A 88.889 72 8 0 1 72 680691494 680691423 5.460000e-14 89.8
24 TraesCS2B01G035000 chr7B 88.966 1876 188 16 411 2278 606589022 606590886 0.000000e+00 2300.0
25 TraesCS2B01G035000 chr7B 90.476 399 27 7 2944 3332 606640454 606640851 2.110000e-142 516.0
26 TraesCS2B01G035000 chr7B 92.720 261 17 2 2275 2533 66852103 66851843 3.740000e-100 375.0
27 TraesCS2B01G035000 chr7B 92.720 261 17 2 2275 2533 563089763 563089503 3.740000e-100 375.0
28 TraesCS2B01G035000 chr7B 91.441 222 10 6 2711 2924 606591271 606591491 3.000000e-76 296.0
29 TraesCS2B01G035000 chr7B 82.759 145 19 4 2943 3083 706073453 706073311 1.500000e-24 124.0
30 TraesCS2B01G035000 chr7B 78.481 158 28 5 279 431 720709636 720709792 9.070000e-17 99.0
31 TraesCS2B01G035000 chr3B 81.090 1449 217 23 251 1663 397298327 397299754 0.000000e+00 1105.0
32 TraesCS2B01G035000 chr3B 89.825 855 56 18 2549 3390 817858009 817858845 0.000000e+00 1068.0
33 TraesCS2B01G035000 chr3B 89.838 433 42 1 1762 2194 397300444 397300874 4.480000e-154 555.0
34 TraesCS2B01G035000 chr3B 92.720 261 17 2 2275 2533 744785674 744785414 3.740000e-100 375.0
35 TraesCS2B01G035000 chr7A 89.038 821 86 4 1459 2278 143879807 143880624 0.000000e+00 1014.0
36 TraesCS2B01G035000 chr7A 85.958 819 107 5 1 813 143804754 143805570 0.000000e+00 869.0
37 TraesCS2B01G035000 chr7A 90.249 482 39 5 2513 2986 143880622 143881103 1.210000e-174 623.0
38 TraesCS2B01G035000 chr5D 92.870 575 35 4 3392 3965 433882193 433881624 0.000000e+00 830.0
39 TraesCS2B01G035000 chr2D 89.864 513 47 2 3453 3965 548455892 548455385 0.000000e+00 654.0
40 TraesCS2B01G035000 chr2D 91.837 49 3 1 3140 3188 72604970 72605017 2.560000e-07 67.6
41 TraesCS2B01G035000 chr1A 89.689 514 47 3 3453 3965 6075564 6075056 0.000000e+00 651.0
42 TraesCS2B01G035000 chr1A 89.689 514 47 3 3453 3965 560362266 560361758 0.000000e+00 651.0
43 TraesCS2B01G035000 chr1D 89.423 520 48 3 3448 3965 371669871 371670385 0.000000e+00 649.0
44 TraesCS2B01G035000 chr6D 89.362 517 52 2 1762 2278 122234233 122233720 0.000000e+00 647.0
45 TraesCS2B01G035000 chr6D 86.517 267 34 2 1308 1572 122235218 122235484 3.880000e-75 292.0
46 TraesCS2B01G035000 chr4B 83.942 548 66 15 1120 1663 475798156 475797627 4.570000e-139 505.0
47 TraesCS2B01G035000 chr4B 93.103 261 16 2 2275 2533 286644595 286644335 8.040000e-102 381.0
48 TraesCS2B01G035000 chr4B 92.105 266 18 3 2275 2540 359759723 359759461 4.840000e-99 372.0
49 TraesCS2B01G035000 chrUn 94.800 250 11 2 2276 2525 59805325 59805078 4.800000e-104 388.0
50 TraesCS2B01G035000 chrUn 92.830 265 16 3 2274 2537 119206051 119206313 8.040000e-102 381.0
51 TraesCS2B01G035000 chrUn 84.444 270 21 5 1 270 232355419 232355171 3.060000e-61 246.0
52 TraesCS2B01G035000 chr5B 86.296 270 16 6 1 270 203359974 203360222 1.400000e-69 274.0
53 TraesCS2B01G035000 chr3A 84.074 270 22 5 1 270 29162790 29162542 1.420000e-59 241.0
54 TraesCS2B01G035000 chr6A 80.488 246 32 13 3116 3354 222687313 222687077 1.460000e-39 174.0
55 TraesCS2B01G035000 chr6B 82.090 134 21 2 300 431 546655138 546655270 1.160000e-20 111.0
56 TraesCS2B01G035000 chr6B 95.349 43 2 0 3034 3076 584051504 584051546 7.110000e-08 69.4
57 TraesCS2B01G035000 chr4D 74.902 255 41 16 3109 3356 124012479 124012241 1.170000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G035000 chr2B 16904748 16908712 3964 True 7323.000000 7323 100.000000 1 3965 1 chr2B.!!$R1 3964
1 TraesCS2B01G035000 chr2B 16929532 16933511 3979 True 2218.000000 3221 96.881667 1 2705 3 chr2B.!!$R5 2704
2 TraesCS2B01G035000 chr2B 734783399 734783913 514 False 671.000000 671 90.192000 3448 3965 1 chr2B.!!$F2 517
3 TraesCS2B01G035000 chr2B 88886302 88886840 538 False 501.000000 501 83.571000 1120 1675 1 chr2B.!!$F1 555
4 TraesCS2B01G035000 chr4A 704476915 704480973 4058 True 2030.333333 3722 96.451667 1 3965 3 chr4A.!!$R3 3964
5 TraesCS2B01G035000 chr4A 34538050 34538565 515 False 645.000000 645 89.251000 3448 3965 1 chr4A.!!$F1 517
6 TraesCS2B01G035000 chr4A 473520510 473522501 1991 True 248.000000 263 84.599500 1 270 2 chr4A.!!$R2 269
7 TraesCS2B01G035000 chr5A 32103308 32106018 2710 False 2185.500000 3096 95.628000 378 3314 2 chr5A.!!$F1 2936
8 TraesCS2B01G035000 chr5A 30780329 30784422 4093 True 1386.500000 2929 94.458000 378 3965 4 chr5A.!!$R1 3587
9 TraesCS2B01G035000 chr7B 606589022 606591491 2469 False 1298.000000 2300 90.203500 411 2924 2 chr7B.!!$F3 2513
10 TraesCS2B01G035000 chr3B 817858009 817858845 836 False 1068.000000 1068 89.825000 2549 3390 1 chr3B.!!$F1 841
11 TraesCS2B01G035000 chr3B 397298327 397300874 2547 False 830.000000 1105 85.464000 251 2194 2 chr3B.!!$F2 1943
12 TraesCS2B01G035000 chr7A 143804754 143805570 816 False 869.000000 869 85.958000 1 813 1 chr7A.!!$F1 812
13 TraesCS2B01G035000 chr7A 143879807 143881103 1296 False 818.500000 1014 89.643500 1459 2986 2 chr7A.!!$F2 1527
14 TraesCS2B01G035000 chr5D 433881624 433882193 569 True 830.000000 830 92.870000 3392 3965 1 chr5D.!!$R1 573
15 TraesCS2B01G035000 chr2D 548455385 548455892 507 True 654.000000 654 89.864000 3453 3965 1 chr2D.!!$R1 512
16 TraesCS2B01G035000 chr1A 6075056 6075564 508 True 651.000000 651 89.689000 3453 3965 1 chr1A.!!$R1 512
17 TraesCS2B01G035000 chr1A 560361758 560362266 508 True 651.000000 651 89.689000 3453 3965 1 chr1A.!!$R2 512
18 TraesCS2B01G035000 chr1D 371669871 371670385 514 False 649.000000 649 89.423000 3448 3965 1 chr1D.!!$F1 517
19 TraesCS2B01G035000 chr6D 122233720 122234233 513 True 647.000000 647 89.362000 1762 2278 1 chr6D.!!$R1 516
20 TraesCS2B01G035000 chr4B 475797627 475798156 529 True 505.000000 505 83.942000 1120 1663 1 chr4B.!!$R3 543

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
136 137 0.101399 ACTGATGATCGTGTCGGCTC 59.899 55.0 0.00 0.00 0.00 4.70 F
615 2370 0.514255 CATGCACGTGAGTTGTCTGG 59.486 55.0 22.23 0.00 46.40 3.86 F
1482 3269 0.102481 GCTGCCTCAATGCTTGATGG 59.898 55.0 0.00 5.18 39.30 3.51 F
2292 6183 0.998145 ACTACTACCTCCGTCCTGGT 59.002 55.0 0.00 0.00 39.52 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1435 3222 1.648504 CCGGACCATTTTACGAGACC 58.351 55.000 0.0 0.0 0.0 3.85 R
2496 6387 0.700564 TGTACTACCTCCGTCTGGGT 59.299 55.000 0.0 0.0 39.4 4.51 R
2498 6389 1.067212 GCATGTACTACCTCCGTCTGG 59.933 57.143 0.0 0.0 0.0 3.86 R
3723 8835 1.078988 GCCCACATGCCAACCAATG 60.079 57.895 0.0 0.0 0.0 2.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 3.756963 CTGCTAGGGTTTAACCAAGAACC 59.243 47.826 16.58 0.00 41.02 3.62
96 97 0.836606 TGAATCCTATTCCGCTGCCA 59.163 50.000 0.00 0.00 0.00 4.92
136 137 0.101399 ACTGATGATCGTGTCGGCTC 59.899 55.000 0.00 0.00 0.00 4.70
152 155 1.919600 GCTCTGGCCATGTCCCTCTT 61.920 60.000 5.51 0.00 0.00 2.85
267 2014 2.685387 CTAGATCGCGCCTCGGCTTT 62.685 60.000 0.00 0.00 39.32 3.51
372 2122 1.087771 GCATGCAAATTGAGCTGCCC 61.088 55.000 14.21 0.00 37.79 5.36
474 2227 4.096003 CCACGACGGGCCTCCAAT 62.096 66.667 0.84 0.00 0.00 3.16
541 2294 2.267642 GTGCTGGACGGGCATACA 59.732 61.111 0.00 0.00 41.86 2.29
582 2335 2.291365 TGATGGCAATCGGAATCAGTG 58.709 47.619 0.00 0.00 35.37 3.66
615 2370 0.514255 CATGCACGTGAGTTGTCTGG 59.486 55.000 22.23 0.00 46.40 3.86
668 2423 3.120321 ACTTAAATGACTGCGGACACA 57.880 42.857 0.00 0.00 0.00 3.72
669 2424 3.067106 ACTTAAATGACTGCGGACACAG 58.933 45.455 0.00 0.00 43.59 3.66
767 2523 9.378551 GTGTCATAATGTACTATTCCTCAAACA 57.621 33.333 0.00 0.00 0.00 2.83
990 2770 4.740268 TGTATAGCTTGGTGACTGTTACG 58.260 43.478 0.00 0.00 0.00 3.18
1108 2890 5.053145 GGCTTCTTGAGTATAGTGGTGATG 58.947 45.833 0.00 0.00 0.00 3.07
1435 3222 1.078848 CTCCCTTGACGCCCTTGAG 60.079 63.158 0.00 0.00 0.00 3.02
1482 3269 0.102481 GCTGCCTCAATGCTTGATGG 59.898 55.000 0.00 5.18 39.30 3.51
1540 3329 3.620488 TCTGGTGCATAATCTGGGTTTC 58.380 45.455 0.00 0.00 0.00 2.78
1584 4884 4.306600 AGGCAACGATCAAAATGGTTTTC 58.693 39.130 0.00 0.00 46.39 2.29
1849 5740 6.935208 ACAGGTGACAGGTTTTACTAATCTTC 59.065 38.462 0.00 0.00 0.00 2.87
2231 6122 5.428253 GTGGTTTACAGGAGATAGATGCAA 58.572 41.667 0.00 0.00 0.00 4.08
2278 6169 3.057736 CAGCTGCTGCAAATTCAACTACT 60.058 43.478 17.73 0.00 42.74 2.57
2279 6170 4.154737 CAGCTGCTGCAAATTCAACTACTA 59.845 41.667 17.73 0.00 42.74 1.82
2280 6171 4.154918 AGCTGCTGCAAATTCAACTACTAC 59.845 41.667 18.42 0.00 42.74 2.73
2281 6172 4.672801 GCTGCTGCAAATTCAACTACTACC 60.673 45.833 11.11 0.00 39.41 3.18
2282 6173 4.651778 TGCTGCAAATTCAACTACTACCT 58.348 39.130 0.00 0.00 0.00 3.08
2283 6174 4.695455 TGCTGCAAATTCAACTACTACCTC 59.305 41.667 0.00 0.00 0.00 3.85
2284 6175 4.095036 GCTGCAAATTCAACTACTACCTCC 59.905 45.833 0.00 0.00 0.00 4.30
2285 6176 4.250464 TGCAAATTCAACTACTACCTCCG 58.750 43.478 0.00 0.00 0.00 4.63
2286 6177 4.251268 GCAAATTCAACTACTACCTCCGT 58.749 43.478 0.00 0.00 0.00 4.69
2287 6178 4.329256 GCAAATTCAACTACTACCTCCGTC 59.671 45.833 0.00 0.00 0.00 4.79
2288 6179 4.732672 AATTCAACTACTACCTCCGTCC 57.267 45.455 0.00 0.00 0.00 4.79
2289 6180 3.446442 TTCAACTACTACCTCCGTCCT 57.554 47.619 0.00 0.00 0.00 3.85
2290 6181 2.719739 TCAACTACTACCTCCGTCCTG 58.280 52.381 0.00 0.00 0.00 3.86
2291 6182 1.749634 CAACTACTACCTCCGTCCTGG 59.250 57.143 0.00 0.00 40.09 4.45
2292 6183 0.998145 ACTACTACCTCCGTCCTGGT 59.002 55.000 0.00 0.00 39.52 4.00
2293 6184 1.357079 ACTACTACCTCCGTCCTGGTT 59.643 52.381 0.00 0.00 39.52 3.67
2294 6185 2.225217 ACTACTACCTCCGTCCTGGTTT 60.225 50.000 0.00 0.00 39.52 3.27
2295 6186 2.610438 ACTACCTCCGTCCTGGTTTA 57.390 50.000 0.00 0.00 39.52 2.01
2296 6187 3.111741 ACTACCTCCGTCCTGGTTTAT 57.888 47.619 0.00 0.00 39.52 1.40
2297 6188 4.255510 ACTACCTCCGTCCTGGTTTATA 57.744 45.455 0.00 0.00 39.52 0.98
2298 6189 4.213513 ACTACCTCCGTCCTGGTTTATAG 58.786 47.826 0.00 0.00 39.52 1.31
2299 6190 2.395619 ACCTCCGTCCTGGTTTATAGG 58.604 52.381 0.00 0.00 39.52 2.57
2300 6191 2.292719 ACCTCCGTCCTGGTTTATAGGT 60.293 50.000 0.00 0.00 35.62 3.08
2301 6192 2.364647 CCTCCGTCCTGGTTTATAGGTC 59.635 54.545 0.00 0.00 39.52 3.85
2302 6193 2.364647 CTCCGTCCTGGTTTATAGGTCC 59.635 54.545 0.00 0.00 39.52 4.46
2303 6194 2.023695 TCCGTCCTGGTTTATAGGTCCT 60.024 50.000 0.00 0.00 39.52 3.85
2304 6195 2.364647 CCGTCCTGGTTTATAGGTCCTC 59.635 54.545 0.00 0.00 36.67 3.71
2305 6196 3.297736 CGTCCTGGTTTATAGGTCCTCT 58.702 50.000 0.00 0.00 36.67 3.69
2306 6197 3.705072 CGTCCTGGTTTATAGGTCCTCTT 59.295 47.826 0.00 0.00 36.67 2.85
2307 6198 4.161754 CGTCCTGGTTTATAGGTCCTCTTT 59.838 45.833 0.00 0.00 36.67 2.52
2308 6199 5.429130 GTCCTGGTTTATAGGTCCTCTTTG 58.571 45.833 0.00 0.00 36.67 2.77
2309 6200 5.045797 GTCCTGGTTTATAGGTCCTCTTTGT 60.046 44.000 0.00 0.00 36.67 2.83
2310 6201 5.550403 TCCTGGTTTATAGGTCCTCTTTGTT 59.450 40.000 0.00 0.00 36.67 2.83
2311 6202 6.045106 TCCTGGTTTATAGGTCCTCTTTGTTT 59.955 38.462 0.00 0.00 36.67 2.83
2312 6203 6.719829 CCTGGTTTATAGGTCCTCTTTGTTTT 59.280 38.462 0.00 0.00 0.00 2.43
2313 6204 7.232737 CCTGGTTTATAGGTCCTCTTTGTTTTT 59.767 37.037 0.00 0.00 0.00 1.94
2335 6226 8.553459 TTTTTGTGCCAAATTTTGACTAAAGA 57.447 26.923 10.72 0.00 0.00 2.52
2336 6227 8.729805 TTTTGTGCCAAATTTTGACTAAAGAT 57.270 26.923 10.72 0.00 0.00 2.40
2337 6228 9.823647 TTTTGTGCCAAATTTTGACTAAAGATA 57.176 25.926 10.72 0.00 0.00 1.98
2338 6229 9.995003 TTTGTGCCAAATTTTGACTAAAGATAT 57.005 25.926 10.72 0.00 0.00 1.63
2365 6256 9.539825 AACTAACAAAATGTTAATGCATGTCAA 57.460 25.926 0.00 0.00 41.70 3.18
2366 6257 9.195411 ACTAACAAAATGTTAATGCATGTCAAG 57.805 29.630 0.00 0.00 41.70 3.02
2367 6258 9.409312 CTAACAAAATGTTAATGCATGTCAAGA 57.591 29.630 0.00 0.00 41.70 3.02
2368 6259 8.659925 AACAAAATGTTAATGCATGTCAAGAA 57.340 26.923 0.00 0.00 39.09 2.52
2369 6260 8.659925 ACAAAATGTTAATGCATGTCAAGAAA 57.340 26.923 0.00 0.00 0.00 2.52
2370 6261 9.107177 ACAAAATGTTAATGCATGTCAAGAAAA 57.893 25.926 0.00 0.00 0.00 2.29
2371 6262 9.932699 CAAAATGTTAATGCATGTCAAGAAAAA 57.067 25.926 0.00 0.00 0.00 1.94
2382 6273 9.361315 TGCATGTCAAGAAAAATTATCTCATTG 57.639 29.630 0.00 0.00 0.00 2.82
2383 6274 8.814235 GCATGTCAAGAAAAATTATCTCATTGG 58.186 33.333 0.00 0.00 0.00 3.16
2389 6280 9.793252 CAAGAAAAATTATCTCATTGGATTCGT 57.207 29.630 0.00 0.00 0.00 3.85
2398 6289 7.864108 ATCTCATTGGATTCGTATTTGAACA 57.136 32.000 0.00 0.00 0.00 3.18
2399 6290 7.864108 TCTCATTGGATTCGTATTTGAACAT 57.136 32.000 0.00 0.00 0.00 2.71
2400 6291 8.956533 TCTCATTGGATTCGTATTTGAACATA 57.043 30.769 0.00 0.00 0.00 2.29
2401 6292 9.045223 TCTCATTGGATTCGTATTTGAACATAG 57.955 33.333 0.00 0.00 0.00 2.23
2402 6293 8.731275 TCATTGGATTCGTATTTGAACATAGT 57.269 30.769 0.00 0.00 0.00 2.12
2403 6294 9.173021 TCATTGGATTCGTATTTGAACATAGTT 57.827 29.630 0.00 0.00 0.00 2.24
2404 6295 9.787532 CATTGGATTCGTATTTGAACATAGTTT 57.212 29.630 0.00 0.00 0.00 2.66
2407 6298 9.619316 TGGATTCGTATTTGAACATAGTTTTTG 57.381 29.630 0.00 0.00 0.00 2.44
2408 6299 9.834628 GGATTCGTATTTGAACATAGTTTTTGA 57.165 29.630 0.00 0.00 0.00 2.69
2432 6323 8.858186 TGAAAATATAATGTTTGTTGACATGCG 58.142 29.630 0.00 0.00 40.03 4.73
2433 6324 8.755696 AAAATATAATGTTTGTTGACATGCGT 57.244 26.923 0.00 0.00 40.03 5.24
2434 6325 7.739022 AATATAATGTTTGTTGACATGCGTG 57.261 32.000 3.82 3.82 40.03 5.34
2435 6326 3.706802 AATGTTTGTTGACATGCGTGA 57.293 38.095 14.17 0.00 40.03 4.35
2436 6327 3.706802 ATGTTTGTTGACATGCGTGAA 57.293 38.095 14.17 0.00 38.75 3.18
2437 6328 3.494045 TGTTTGTTGACATGCGTGAAA 57.506 38.095 14.17 3.77 0.00 2.69
2438 6329 3.838120 TGTTTGTTGACATGCGTGAAAA 58.162 36.364 14.17 3.38 0.00 2.29
2439 6330 4.428209 TGTTTGTTGACATGCGTGAAAAT 58.572 34.783 14.17 0.00 0.00 1.82
2440 6331 4.867047 TGTTTGTTGACATGCGTGAAAATT 59.133 33.333 14.17 0.00 0.00 1.82
2441 6332 5.349817 TGTTTGTTGACATGCGTGAAAATTT 59.650 32.000 14.17 0.00 0.00 1.82
2442 6333 6.128445 TGTTTGTTGACATGCGTGAAAATTTT 60.128 30.769 14.17 2.28 0.00 1.82
2443 6334 5.386810 TGTTGACATGCGTGAAAATTTTG 57.613 34.783 14.17 0.00 0.00 2.44
2444 6335 4.867047 TGTTGACATGCGTGAAAATTTTGT 59.133 33.333 14.17 0.00 0.00 2.83
2445 6336 5.349817 TGTTGACATGCGTGAAAATTTTGTT 59.650 32.000 14.17 0.00 0.00 2.83
2446 6337 6.531594 TGTTGACATGCGTGAAAATTTTGTTA 59.468 30.769 14.17 0.00 0.00 2.41
2447 6338 6.746104 TGACATGCGTGAAAATTTTGTTAG 57.254 33.333 14.17 0.00 0.00 2.34
2448 6339 6.269315 TGACATGCGTGAAAATTTTGTTAGT 58.731 32.000 14.17 0.00 0.00 2.24
2449 6340 6.754209 TGACATGCGTGAAAATTTTGTTAGTT 59.246 30.769 14.17 0.00 0.00 2.24
2450 6341 7.276658 TGACATGCGTGAAAATTTTGTTAGTTT 59.723 29.630 14.17 0.00 0.00 2.66
2451 6342 8.635877 ACATGCGTGAAAATTTTGTTAGTTTA 57.364 26.923 14.17 0.00 0.00 2.01
2452 6343 9.088512 ACATGCGTGAAAATTTTGTTAGTTTAA 57.911 25.926 14.17 0.00 0.00 1.52
2455 6346 9.522804 TGCGTGAAAATTTTGTTAGTTTAATCT 57.477 25.926 8.47 0.00 0.00 2.40
2472 6363 8.592809 AGTTTAATCTATGGTCAAAATTTGGCA 58.407 29.630 12.62 0.00 36.88 4.92
2473 6364 8.655970 GTTTAATCTATGGTCAAAATTTGGCAC 58.344 33.333 12.62 1.03 36.88 5.01
2474 6365 4.433186 TCTATGGTCAAAATTTGGCACG 57.567 40.909 12.62 0.00 36.88 5.34
2475 6366 4.075682 TCTATGGTCAAAATTTGGCACGA 58.924 39.130 12.62 0.00 36.88 4.35
2476 6367 3.742433 ATGGTCAAAATTTGGCACGAA 57.258 38.095 12.62 0.00 36.88 3.85
2477 6368 3.526931 TGGTCAAAATTTGGCACGAAA 57.473 38.095 12.62 0.00 36.88 3.46
2478 6369 4.065321 TGGTCAAAATTTGGCACGAAAT 57.935 36.364 12.62 0.00 36.88 2.17
2479 6370 5.201713 TGGTCAAAATTTGGCACGAAATA 57.798 34.783 12.62 0.00 36.88 1.40
2480 6371 4.985409 TGGTCAAAATTTGGCACGAAATAC 59.015 37.500 12.62 0.00 36.88 1.89
2481 6372 4.985409 GGTCAAAATTTGGCACGAAATACA 59.015 37.500 12.62 0.00 36.88 2.29
2482 6373 5.463724 GGTCAAAATTTGGCACGAAATACAA 59.536 36.000 12.62 0.00 36.88 2.41
2483 6374 6.147000 GGTCAAAATTTGGCACGAAATACAAT 59.853 34.615 12.62 0.00 36.88 2.71
2484 6375 7.008859 GTCAAAATTTGGCACGAAATACAATG 58.991 34.615 5.33 0.00 34.79 2.82
2485 6376 6.925718 TCAAAATTTGGCACGAAATACAATGA 59.074 30.769 5.83 0.00 0.00 2.57
2486 6377 6.949578 AAATTTGGCACGAAATACAATGAG 57.050 33.333 0.00 0.00 0.00 2.90
2487 6378 4.433186 TTTGGCACGAAATACAATGAGG 57.567 40.909 0.00 0.00 0.00 3.86
2488 6379 3.342377 TGGCACGAAATACAATGAGGA 57.658 42.857 0.00 0.00 0.00 3.71
2489 6380 3.006940 TGGCACGAAATACAATGAGGAC 58.993 45.455 0.00 0.00 0.00 3.85
2490 6381 2.354821 GGCACGAAATACAATGAGGACC 59.645 50.000 0.00 0.00 0.00 4.46
2491 6382 3.006940 GCACGAAATACAATGAGGACCA 58.993 45.455 0.00 0.00 0.00 4.02
2492 6383 3.438781 GCACGAAATACAATGAGGACCAA 59.561 43.478 0.00 0.00 0.00 3.67
2493 6384 4.096382 GCACGAAATACAATGAGGACCAAT 59.904 41.667 0.00 0.00 0.00 3.16
2494 6385 5.295787 GCACGAAATACAATGAGGACCAATA 59.704 40.000 0.00 0.00 0.00 1.90
2495 6386 6.183360 GCACGAAATACAATGAGGACCAATAA 60.183 38.462 0.00 0.00 0.00 1.40
2496 6387 7.627513 GCACGAAATACAATGAGGACCAATAAA 60.628 37.037 0.00 0.00 0.00 1.40
2497 6388 7.696453 CACGAAATACAATGAGGACCAATAAAC 59.304 37.037 0.00 0.00 0.00 2.01
2498 6389 7.148137 ACGAAATACAATGAGGACCAATAAACC 60.148 37.037 0.00 0.00 0.00 3.27
2499 6390 7.418337 AAATACAATGAGGACCAATAAACCC 57.582 36.000 0.00 0.00 0.00 4.11
2500 6391 4.396357 ACAATGAGGACCAATAAACCCA 57.604 40.909 0.00 0.00 0.00 4.51
2501 6392 4.344104 ACAATGAGGACCAATAAACCCAG 58.656 43.478 0.00 0.00 0.00 4.45
2502 6393 4.044065 ACAATGAGGACCAATAAACCCAGA 59.956 41.667 0.00 0.00 0.00 3.86
2503 6394 3.713826 TGAGGACCAATAAACCCAGAC 57.286 47.619 0.00 0.00 0.00 3.51
2504 6395 2.027561 TGAGGACCAATAAACCCAGACG 60.028 50.000 0.00 0.00 0.00 4.18
2505 6396 1.280998 AGGACCAATAAACCCAGACGG 59.719 52.381 0.00 0.00 37.81 4.79
2506 6397 1.279846 GGACCAATAAACCCAGACGGA 59.720 52.381 0.00 0.00 34.64 4.69
2507 6398 2.629051 GACCAATAAACCCAGACGGAG 58.371 52.381 0.00 0.00 34.64 4.63
2508 6399 1.280998 ACCAATAAACCCAGACGGAGG 59.719 52.381 0.00 0.00 34.64 4.30
2509 6400 1.280998 CCAATAAACCCAGACGGAGGT 59.719 52.381 0.00 0.00 38.27 3.85
2510 6401 2.502538 CCAATAAACCCAGACGGAGGTA 59.497 50.000 0.00 0.00 34.45 3.08
2511 6402 3.431766 CCAATAAACCCAGACGGAGGTAG 60.432 52.174 0.00 0.00 34.45 3.18
2512 6403 2.610438 TAAACCCAGACGGAGGTAGT 57.390 50.000 0.00 0.00 34.45 2.73
2513 6404 2.610438 AAACCCAGACGGAGGTAGTA 57.390 50.000 0.00 0.00 34.45 1.82
2514 6405 1.844687 AACCCAGACGGAGGTAGTAC 58.155 55.000 0.00 0.00 34.45 2.73
2607 6498 9.774413 TCAATCTGATAGTATGTACTAACTCGA 57.226 33.333 4.18 4.16 41.64 4.04
2708 6599 3.302365 AGTGCACACCATTGTATTTGC 57.698 42.857 21.04 0.00 33.30 3.68
3189 7967 6.878923 CACATACCCTAACAAGTCATTTCTCA 59.121 38.462 0.00 0.00 0.00 3.27
3325 8109 1.571955 TCTAGCAGCTGACCAATGGA 58.428 50.000 20.43 1.61 0.00 3.41
3326 8110 2.121948 TCTAGCAGCTGACCAATGGAT 58.878 47.619 20.43 0.00 0.00 3.41
3327 8111 3.308401 TCTAGCAGCTGACCAATGGATA 58.692 45.455 20.43 0.00 0.00 2.59
3328 8112 3.906218 TCTAGCAGCTGACCAATGGATAT 59.094 43.478 20.43 0.00 0.00 1.63
3329 8113 5.086621 TCTAGCAGCTGACCAATGGATATA 58.913 41.667 20.43 0.00 0.00 0.86
3330 8114 4.923516 AGCAGCTGACCAATGGATATAT 57.076 40.909 20.43 0.00 0.00 0.86
3413 8524 6.739112 TGATATCACTTCTACCGTTCAGATG 58.261 40.000 0.00 0.00 0.00 2.90
3486 8597 8.972458 TTTTAGTATGCAAGTATGGAGCAATA 57.028 30.769 0.00 0.00 42.15 1.90
3627 8739 4.124851 ACCTCGGTTGTACTCATGATTC 57.875 45.455 0.00 0.00 0.00 2.52
3679 8791 8.812972 ACTGGACAACTTCTGAATATACTACAA 58.187 33.333 0.00 0.00 0.00 2.41
3723 8835 2.380084 TTGTGTTCGGGACTAGCATC 57.620 50.000 0.00 0.00 0.00 3.91
3727 8839 2.609459 GTGTTCGGGACTAGCATCATTG 59.391 50.000 0.00 0.00 0.00 2.82
3797 8909 1.304381 GGGGTCTGCAATGGAAGCA 60.304 57.895 0.00 0.00 40.19 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
96 97 3.063084 GGCGAGGTGGACGAGTCT 61.063 66.667 3.09 0.00 0.00 3.24
136 137 1.153289 CGAAGAGGGACATGGCCAG 60.153 63.158 22.13 6.08 0.00 4.85
152 155 1.141665 CATCATCACAGCCGTCCGA 59.858 57.895 0.00 0.00 0.00 4.55
267 2014 1.227764 CCGACGTCGAGGGATCCTA 60.228 63.158 37.65 0.00 43.02 2.94
310 2060 1.055551 AGAACCCACAACGTACCCCA 61.056 55.000 0.00 0.00 0.00 4.96
359 2109 1.829222 CCATTGAGGGCAGCTCAATTT 59.171 47.619 14.04 0.00 45.87 1.82
372 2122 4.501071 CAGGCTTCCAAAAATCCATTGAG 58.499 43.478 0.00 0.00 0.00 3.02
469 2222 1.469703 CAAGTCGATTGCTGCATTGGA 59.530 47.619 1.84 3.99 30.65 3.53
474 2227 0.250252 TGGACAAGTCGATTGCTGCA 60.250 50.000 0.00 0.00 43.15 4.41
541 2294 7.875041 CCATCAATTATGATTCTTCTCTACGGT 59.125 37.037 0.00 0.00 43.89 4.83
582 2335 2.565841 GTGCATGGTCTATTCCTCCAC 58.434 52.381 0.00 0.00 33.91 4.02
615 2370 6.423302 TGCCAAATTAATGTCACACATTTGAC 59.577 34.615 15.86 8.53 45.80 3.18
632 2387 7.173047 GTCATTTAAGTTCCAACATGCCAAATT 59.827 33.333 0.00 0.00 0.00 1.82
668 2423 3.228188 TGGTGAAAAGACATGGAAGCT 57.772 42.857 0.00 0.00 0.00 3.74
669 2424 4.240096 CATTGGTGAAAAGACATGGAAGC 58.760 43.478 0.00 0.00 0.00 3.86
825 2581 5.190726 TGGAAAGTTCTCCCCACAAAATTTT 59.809 36.000 0.00 0.00 34.22 1.82
990 2770 5.180868 ACTCTTCTCATTCATGTTCTGCAAC 59.819 40.000 0.00 0.00 0.00 4.17
1108 2890 3.945285 ACGTAATCCACAATGATCAACCC 59.055 43.478 0.00 0.00 0.00 4.11
1435 3222 1.648504 CCGGACCATTTTACGAGACC 58.351 55.000 0.00 0.00 0.00 3.85
1482 3269 4.192317 CCTTGGCCTCTTACAGAACATAC 58.808 47.826 3.32 0.00 0.00 2.39
1659 4959 9.435688 TGTGGATAATATGATTATGCAGTACAC 57.564 33.333 12.10 3.62 34.23 2.90
1700 5450 2.552599 TTCCACTTCGGCATGTGTTA 57.447 45.000 0.00 0.00 32.76 2.41
1789 5680 4.927782 TGACGCGGGCAAGCAAGT 62.928 61.111 12.47 0.00 36.85 3.16
1849 5740 2.767505 AGGAGCAAACGAACTTGTAGG 58.232 47.619 0.00 0.00 0.00 3.18
2231 6122 3.561725 CCGAAAGAAGAAAACAGAGCAGT 59.438 43.478 0.00 0.00 0.00 4.40
2278 6169 3.052642 ACCTATAAACCAGGACGGAGGTA 60.053 47.826 0.00 0.00 35.66 3.08
2279 6170 2.292719 ACCTATAAACCAGGACGGAGGT 60.293 50.000 0.00 0.00 40.61 3.85
2280 6171 2.364647 GACCTATAAACCAGGACGGAGG 59.635 54.545 0.00 0.00 38.63 4.30
2281 6172 2.364647 GGACCTATAAACCAGGACGGAG 59.635 54.545 0.00 0.00 38.63 4.63
2282 6173 2.023695 AGGACCTATAAACCAGGACGGA 60.024 50.000 0.00 0.00 38.63 4.69
2283 6174 2.364647 GAGGACCTATAAACCAGGACGG 59.635 54.545 0.00 0.00 42.50 4.79
2284 6175 3.297736 AGAGGACCTATAAACCAGGACG 58.702 50.000 0.00 0.00 36.61 4.79
2285 6176 5.045797 ACAAAGAGGACCTATAAACCAGGAC 60.046 44.000 0.00 0.00 36.61 3.85
2286 6177 5.098663 ACAAAGAGGACCTATAAACCAGGA 58.901 41.667 0.00 0.00 36.61 3.86
2287 6178 5.437191 ACAAAGAGGACCTATAAACCAGG 57.563 43.478 0.00 0.00 39.25 4.45
2288 6179 7.761038 AAAACAAAGAGGACCTATAAACCAG 57.239 36.000 0.00 0.00 0.00 4.00
2339 6230 9.539825 TTGACATGCATTAACATTTTGTTAGTT 57.460 25.926 0.00 0.00 42.93 2.24
2340 6231 9.195411 CTTGACATGCATTAACATTTTGTTAGT 57.805 29.630 0.00 0.00 42.93 2.24
2341 6232 9.409312 TCTTGACATGCATTAACATTTTGTTAG 57.591 29.630 0.00 0.00 42.93 2.34
2342 6233 9.755804 TTCTTGACATGCATTAACATTTTGTTA 57.244 25.926 0.00 0.00 41.45 2.41
2343 6234 8.659925 TTCTTGACATGCATTAACATTTTGTT 57.340 26.923 0.00 0.00 43.88 2.83
2344 6235 8.659925 TTTCTTGACATGCATTAACATTTTGT 57.340 26.923 0.00 0.00 0.00 2.83
2345 6236 9.932699 TTTTTCTTGACATGCATTAACATTTTG 57.067 25.926 0.00 0.00 0.00 2.44
2356 6247 9.361315 CAATGAGATAATTTTTCTTGACATGCA 57.639 29.630 0.00 0.00 0.00 3.96
2357 6248 8.814235 CCAATGAGATAATTTTTCTTGACATGC 58.186 33.333 0.00 0.00 0.00 4.06
2363 6254 9.793252 ACGAATCCAATGAGATAATTTTTCTTG 57.207 29.630 0.00 0.00 0.00 3.02
2372 6263 9.389755 TGTTCAAATACGAATCCAATGAGATAA 57.610 29.630 0.00 0.00 0.00 1.75
2373 6264 8.956533 TGTTCAAATACGAATCCAATGAGATA 57.043 30.769 0.00 0.00 0.00 1.98
2374 6265 7.864108 TGTTCAAATACGAATCCAATGAGAT 57.136 32.000 0.00 0.00 0.00 2.75
2375 6266 7.864108 ATGTTCAAATACGAATCCAATGAGA 57.136 32.000 0.00 0.00 0.00 3.27
2376 6267 8.830580 ACTATGTTCAAATACGAATCCAATGAG 58.169 33.333 0.00 0.00 0.00 2.90
2377 6268 8.731275 ACTATGTTCAAATACGAATCCAATGA 57.269 30.769 0.00 0.00 0.00 2.57
2378 6269 9.787532 AAACTATGTTCAAATACGAATCCAATG 57.212 29.630 0.00 0.00 0.00 2.82
2381 6272 9.619316 CAAAAACTATGTTCAAATACGAATCCA 57.381 29.630 0.00 0.00 0.00 3.41
2382 6273 9.834628 TCAAAAACTATGTTCAAATACGAATCC 57.165 29.630 0.00 0.00 0.00 3.01
2406 6297 8.858186 CGCATGTCAACAAACATTATATTTTCA 58.142 29.630 0.00 0.00 37.78 2.69
2407 6298 8.859156 ACGCATGTCAACAAACATTATATTTTC 58.141 29.630 0.00 0.00 37.78 2.29
2408 6299 8.646356 CACGCATGTCAACAAACATTATATTTT 58.354 29.630 0.00 0.00 37.78 1.82
2409 6300 8.026026 TCACGCATGTCAACAAACATTATATTT 58.974 29.630 0.00 0.00 37.78 1.40
2410 6301 7.534282 TCACGCATGTCAACAAACATTATATT 58.466 30.769 0.00 0.00 37.78 1.28
2411 6302 7.082700 TCACGCATGTCAACAAACATTATAT 57.917 32.000 0.00 0.00 37.78 0.86
2412 6303 6.487689 TCACGCATGTCAACAAACATTATA 57.512 33.333 0.00 0.00 37.78 0.98
2413 6304 5.369685 TCACGCATGTCAACAAACATTAT 57.630 34.783 0.00 0.00 37.78 1.28
2414 6305 4.820284 TCACGCATGTCAACAAACATTA 57.180 36.364 0.00 0.00 37.78 1.90
2415 6306 3.706802 TCACGCATGTCAACAAACATT 57.293 38.095 0.00 0.00 37.78 2.71
2416 6307 3.706802 TTCACGCATGTCAACAAACAT 57.293 38.095 0.00 0.00 40.49 2.71
2417 6308 3.494045 TTTCACGCATGTCAACAAACA 57.506 38.095 0.00 0.00 0.00 2.83
2418 6309 5.388225 AATTTTCACGCATGTCAACAAAC 57.612 34.783 0.00 0.00 0.00 2.93
2419 6310 6.128445 ACAAAATTTTCACGCATGTCAACAAA 60.128 30.769 0.00 0.00 0.00 2.83
2420 6311 5.349817 ACAAAATTTTCACGCATGTCAACAA 59.650 32.000 0.00 0.00 0.00 2.83
2421 6312 4.867047 ACAAAATTTTCACGCATGTCAACA 59.133 33.333 0.00 0.00 0.00 3.33
2422 6313 5.388225 ACAAAATTTTCACGCATGTCAAC 57.612 34.783 0.00 0.00 0.00 3.18
2423 6314 6.754209 ACTAACAAAATTTTCACGCATGTCAA 59.246 30.769 0.00 0.00 0.00 3.18
2424 6315 6.269315 ACTAACAAAATTTTCACGCATGTCA 58.731 32.000 0.00 0.00 0.00 3.58
2425 6316 6.747659 ACTAACAAAATTTTCACGCATGTC 57.252 33.333 0.00 0.00 0.00 3.06
2426 6317 7.532682 AAACTAACAAAATTTTCACGCATGT 57.467 28.000 0.00 0.00 0.00 3.21
2429 6320 9.522804 AGATTAAACTAACAAAATTTTCACGCA 57.477 25.926 0.00 0.00 0.00 5.24
2446 6337 8.592809 TGCCAAATTTTGACCATAGATTAAACT 58.407 29.630 10.72 0.00 0.00 2.66
2447 6338 8.655970 GTGCCAAATTTTGACCATAGATTAAAC 58.344 33.333 10.72 0.00 0.00 2.01
2448 6339 7.543868 CGTGCCAAATTTTGACCATAGATTAAA 59.456 33.333 10.72 0.00 0.00 1.52
2449 6340 7.032580 CGTGCCAAATTTTGACCATAGATTAA 58.967 34.615 10.72 0.00 0.00 1.40
2450 6341 6.375736 TCGTGCCAAATTTTGACCATAGATTA 59.624 34.615 10.72 0.00 0.00 1.75
2451 6342 5.184864 TCGTGCCAAATTTTGACCATAGATT 59.815 36.000 10.72 0.00 0.00 2.40
2452 6343 4.704540 TCGTGCCAAATTTTGACCATAGAT 59.295 37.500 10.72 0.00 0.00 1.98
2453 6344 4.075682 TCGTGCCAAATTTTGACCATAGA 58.924 39.130 10.72 8.13 0.00 1.98
2454 6345 4.433186 TCGTGCCAAATTTTGACCATAG 57.567 40.909 10.72 6.37 0.00 2.23
2455 6346 4.855715 TTCGTGCCAAATTTTGACCATA 57.144 36.364 10.72 0.00 0.00 2.74
2456 6347 3.742433 TTCGTGCCAAATTTTGACCAT 57.258 38.095 10.72 0.00 0.00 3.55
2457 6348 3.526931 TTTCGTGCCAAATTTTGACCA 57.473 38.095 10.72 4.80 0.00 4.02
2458 6349 4.985409 TGTATTTCGTGCCAAATTTTGACC 59.015 37.500 10.72 2.35 0.00 4.02
2459 6350 6.517914 TTGTATTTCGTGCCAAATTTTGAC 57.482 33.333 10.72 0.00 0.00 3.18
2460 6351 6.925718 TCATTGTATTTCGTGCCAAATTTTGA 59.074 30.769 10.72 0.00 0.00 2.69
2461 6352 7.114882 TCATTGTATTTCGTGCCAAATTTTG 57.885 32.000 1.99 1.99 0.00 2.44
2462 6353 6.368516 CCTCATTGTATTTCGTGCCAAATTTT 59.631 34.615 0.00 0.00 0.00 1.82
2463 6354 5.868801 CCTCATTGTATTTCGTGCCAAATTT 59.131 36.000 0.00 0.00 0.00 1.82
2464 6355 5.184864 TCCTCATTGTATTTCGTGCCAAATT 59.815 36.000 0.00 0.00 0.00 1.82
2465 6356 4.704540 TCCTCATTGTATTTCGTGCCAAAT 59.295 37.500 0.00 0.00 0.00 2.32
2466 6357 4.075682 TCCTCATTGTATTTCGTGCCAAA 58.924 39.130 0.00 0.00 0.00 3.28
2467 6358 3.438781 GTCCTCATTGTATTTCGTGCCAA 59.561 43.478 0.00 0.00 0.00 4.52
2468 6359 3.006940 GTCCTCATTGTATTTCGTGCCA 58.993 45.455 0.00 0.00 0.00 4.92
2469 6360 2.354821 GGTCCTCATTGTATTTCGTGCC 59.645 50.000 0.00 0.00 0.00 5.01
2470 6361 3.006940 TGGTCCTCATTGTATTTCGTGC 58.993 45.455 0.00 0.00 0.00 5.34
2471 6362 5.818136 ATTGGTCCTCATTGTATTTCGTG 57.182 39.130 0.00 0.00 0.00 4.35
2472 6363 7.148137 GGTTTATTGGTCCTCATTGTATTTCGT 60.148 37.037 0.00 0.00 0.00 3.85
2473 6364 7.193595 GGTTTATTGGTCCTCATTGTATTTCG 58.806 38.462 0.00 0.00 0.00 3.46
2474 6365 7.123547 TGGGTTTATTGGTCCTCATTGTATTTC 59.876 37.037 0.00 0.00 0.00 2.17
2475 6366 6.957020 TGGGTTTATTGGTCCTCATTGTATTT 59.043 34.615 0.00 0.00 0.00 1.40
2476 6367 6.498538 TGGGTTTATTGGTCCTCATTGTATT 58.501 36.000 0.00 0.00 0.00 1.89
2477 6368 6.069088 TCTGGGTTTATTGGTCCTCATTGTAT 60.069 38.462 0.00 0.00 0.00 2.29
2478 6369 5.251932 TCTGGGTTTATTGGTCCTCATTGTA 59.748 40.000 0.00 0.00 0.00 2.41
2479 6370 4.044065 TCTGGGTTTATTGGTCCTCATTGT 59.956 41.667 0.00 0.00 0.00 2.71
2480 6371 4.399303 GTCTGGGTTTATTGGTCCTCATTG 59.601 45.833 0.00 0.00 0.00 2.82
2481 6372 4.600062 GTCTGGGTTTATTGGTCCTCATT 58.400 43.478 0.00 0.00 0.00 2.57
2482 6373 3.370527 CGTCTGGGTTTATTGGTCCTCAT 60.371 47.826 0.00 0.00 0.00 2.90
2483 6374 2.027561 CGTCTGGGTTTATTGGTCCTCA 60.028 50.000 0.00 0.00 0.00 3.86
2484 6375 2.629051 CGTCTGGGTTTATTGGTCCTC 58.371 52.381 0.00 0.00 0.00 3.71
2485 6376 1.280998 CCGTCTGGGTTTATTGGTCCT 59.719 52.381 0.00 0.00 0.00 3.85
2486 6377 1.279846 TCCGTCTGGGTTTATTGGTCC 59.720 52.381 0.00 0.00 37.00 4.46
2487 6378 2.629051 CTCCGTCTGGGTTTATTGGTC 58.371 52.381 0.00 0.00 37.00 4.02
2488 6379 1.280998 CCTCCGTCTGGGTTTATTGGT 59.719 52.381 0.00 0.00 37.00 3.67
2489 6380 1.280998 ACCTCCGTCTGGGTTTATTGG 59.719 52.381 0.00 0.00 37.00 3.16
2490 6381 2.781681 ACCTCCGTCTGGGTTTATTG 57.218 50.000 0.00 0.00 37.00 1.90
2491 6382 3.447950 ACTACCTCCGTCTGGGTTTATT 58.552 45.455 0.00 0.00 37.07 1.40
2492 6383 3.111741 ACTACCTCCGTCTGGGTTTAT 57.888 47.619 0.00 0.00 37.07 1.40
2493 6384 2.610438 ACTACCTCCGTCTGGGTTTA 57.390 50.000 0.00 0.00 37.07 2.01
2494 6385 2.174360 GTACTACCTCCGTCTGGGTTT 58.826 52.381 0.00 0.00 37.07 3.27
2495 6386 1.076024 TGTACTACCTCCGTCTGGGTT 59.924 52.381 0.00 0.00 37.07 4.11
2496 6387 0.700564 TGTACTACCTCCGTCTGGGT 59.299 55.000 0.00 0.00 39.40 4.51
2497 6388 1.681793 CATGTACTACCTCCGTCTGGG 59.318 57.143 0.00 0.00 35.24 4.45
2498 6389 1.067212 GCATGTACTACCTCCGTCTGG 59.933 57.143 0.00 0.00 0.00 3.86
2499 6390 2.025155 AGCATGTACTACCTCCGTCTG 58.975 52.381 0.00 0.00 0.00 3.51
2500 6391 2.438800 AGCATGTACTACCTCCGTCT 57.561 50.000 0.00 0.00 0.00 4.18
2501 6392 3.631227 ACTTAGCATGTACTACCTCCGTC 59.369 47.826 0.00 0.00 0.00 4.79
2502 6393 3.629087 ACTTAGCATGTACTACCTCCGT 58.371 45.455 0.00 0.00 0.00 4.69
2503 6394 5.961396 ATACTTAGCATGTACTACCTCCG 57.039 43.478 0.00 0.00 0.00 4.63
2530 6421 5.523438 AAGTGGCGGAAAAAGAAACAATA 57.477 34.783 0.00 0.00 0.00 1.90
2542 6433 4.546829 AATTACAGTCTAAGTGGCGGAA 57.453 40.909 0.00 0.00 0.00 4.30
2653 6544 6.586844 GCGACCTGATATTCAAGTACTAATCC 59.413 42.308 0.00 0.00 0.00 3.01
2708 6599 8.873215 AGACTGACAACCATCTAATATTTACG 57.127 34.615 0.00 0.00 0.00 3.18
3189 7967 7.968405 GCGATCAGTTGTTGGTAAATTATTCTT 59.032 33.333 0.00 0.00 0.00 2.52
3359 8470 9.397280 TGAGCATATAGACATATACTCTGGTAC 57.603 37.037 6.48 0.00 37.97 3.34
3375 8486 9.926158 AGAAGTGATATCAAAGTGAGCATATAG 57.074 33.333 7.07 0.00 0.00 1.31
3413 8524 5.157781 GGTAGAAGCGATATGACATCAGAC 58.842 45.833 0.00 0.00 0.00 3.51
3451 8562 9.905713 ATACTTGCATACTAAAAGATCCTTCAA 57.094 29.630 0.00 0.00 0.00 2.69
3486 8597 5.135383 TCATGCAAGCTAGCCATTTTAGAT 58.865 37.500 12.13 0.00 0.00 1.98
3627 8739 5.426504 AGCTGTCAGATTAATGAGACAAGG 58.573 41.667 16.16 9.69 40.14 3.61
3679 8791 3.956848 GCTCCAGGAAGAAAGGCATTAAT 59.043 43.478 0.00 0.00 0.00 1.40
3723 8835 1.078988 GCCCACATGCCAACCAATG 60.079 57.895 0.00 0.00 0.00 2.82
3797 8909 8.199449 CCATAGATGACAAATAAAACCTGCAAT 58.801 33.333 0.00 0.00 0.00 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.