Multiple sequence alignment - TraesCS2B01G032200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G032200 chr2B 100.000 2264 0 0 1 2264 15208505 15206242 0.000000e+00 4181
1 TraesCS2B01G032200 chr2B 90.118 1103 102 5 785 1880 71642695 71641593 0.000000e+00 1426
2 TraesCS2B01G032200 chr2B 89.792 1107 92 13 785 1876 292848192 292849292 0.000000e+00 1399
3 TraesCS2B01G032200 chr3B 90.958 1106 83 7 785 1877 548879875 548880976 0.000000e+00 1472
4 TraesCS2B01G032200 chr3B 93.766 786 46 3 1 785 364465703 364466486 0.000000e+00 1177
5 TraesCS2B01G032200 chr3B 93.622 784 49 1 1 784 376326733 376327515 0.000000e+00 1170
6 TraesCS2B01G032200 chr3B 93.020 788 53 2 1 788 303025983 303025198 0.000000e+00 1149
7 TraesCS2B01G032200 chr3B 85.128 390 57 1 1875 2264 665655591 665655979 4.530000e-107 398
8 TraesCS2B01G032200 chr1B 92.149 1019 75 3 785 1798 449941677 449942695 0.000000e+00 1434
9 TraesCS2B01G032200 chr1B 94.275 786 44 1 1 785 282352870 282352085 0.000000e+00 1201
10 TraesCS2B01G032200 chr1B 93.376 785 51 1 1 784 267083201 267082417 0.000000e+00 1160
11 TraesCS2B01G032200 chr6A 89.526 1117 95 11 785 1880 607999726 607998611 0.000000e+00 1395
12 TraesCS2B01G032200 chr6A 89.087 449 48 1 1227 1674 466145689 466146137 7.060000e-155 556
13 TraesCS2B01G032200 chr1D 92.181 972 69 5 785 1750 198509368 198510338 0.000000e+00 1367
14 TraesCS2B01G032200 chr1D 87.565 386 47 1 1875 2260 38421158 38420774 1.600000e-121 446
15 TraesCS2B01G032200 chr6B 88.949 1113 100 10 787 1877 702946706 702945595 0.000000e+00 1352
16 TraesCS2B01G032200 chr6B 90.099 909 77 6 814 1716 281222604 281221703 0.000000e+00 1168
17 TraesCS2B01G032200 chr5D 91.950 969 70 5 785 1749 358005899 358004935 0.000000e+00 1351
18 TraesCS2B01G032200 chr3D 91.349 971 70 8 785 1750 116062307 116063268 0.000000e+00 1315
19 TraesCS2B01G032200 chr7B 93.790 789 48 1 1 788 172386870 172387658 0.000000e+00 1184
20 TraesCS2B01G032200 chr7B 93.300 791 51 2 1 791 415187553 415186765 0.000000e+00 1166
21 TraesCS2B01G032200 chr7B 93.130 786 54 0 1 786 548678658 548679443 0.000000e+00 1153
22 TraesCS2B01G032200 chr7B 87.661 389 47 1 1875 2263 372352538 372352151 3.430000e-123 451
23 TraesCS2B01G032200 chr7B 85.897 390 54 1 1875 2264 106178880 106178492 4.500000e-112 414
24 TraesCS2B01G032200 chr5B 93.147 788 53 1 1 787 240545088 240544301 0.000000e+00 1155
25 TraesCS2B01G032200 chr5B 87.949 390 45 2 1875 2264 661365517 661365130 2.050000e-125 459
26 TraesCS2B01G032200 chr5B 87.887 388 45 2 1877 2264 602062165 602062550 2.650000e-124 455
27 TraesCS2B01G032200 chr5B 86.154 390 52 2 1875 2263 187007781 187008169 9.670000e-114 420
28 TraesCS2B01G032200 chr2D 86.118 389 53 1 1875 2263 400155197 400155584 3.480000e-113 418
29 TraesCS2B01G032200 chr4B 85.279 394 50 5 1875 2264 244558777 244558388 1.260000e-107 399


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G032200 chr2B 15206242 15208505 2263 True 4181 4181 100.000 1 2264 1 chr2B.!!$R1 2263
1 TraesCS2B01G032200 chr2B 71641593 71642695 1102 True 1426 1426 90.118 785 1880 1 chr2B.!!$R2 1095
2 TraesCS2B01G032200 chr2B 292848192 292849292 1100 False 1399 1399 89.792 785 1876 1 chr2B.!!$F1 1091
3 TraesCS2B01G032200 chr3B 548879875 548880976 1101 False 1472 1472 90.958 785 1877 1 chr3B.!!$F3 1092
4 TraesCS2B01G032200 chr3B 364465703 364466486 783 False 1177 1177 93.766 1 785 1 chr3B.!!$F1 784
5 TraesCS2B01G032200 chr3B 376326733 376327515 782 False 1170 1170 93.622 1 784 1 chr3B.!!$F2 783
6 TraesCS2B01G032200 chr3B 303025198 303025983 785 True 1149 1149 93.020 1 788 1 chr3B.!!$R1 787
7 TraesCS2B01G032200 chr1B 449941677 449942695 1018 False 1434 1434 92.149 785 1798 1 chr1B.!!$F1 1013
8 TraesCS2B01G032200 chr1B 282352085 282352870 785 True 1201 1201 94.275 1 785 1 chr1B.!!$R2 784
9 TraesCS2B01G032200 chr1B 267082417 267083201 784 True 1160 1160 93.376 1 784 1 chr1B.!!$R1 783
10 TraesCS2B01G032200 chr6A 607998611 607999726 1115 True 1395 1395 89.526 785 1880 1 chr6A.!!$R1 1095
11 TraesCS2B01G032200 chr1D 198509368 198510338 970 False 1367 1367 92.181 785 1750 1 chr1D.!!$F1 965
12 TraesCS2B01G032200 chr6B 702945595 702946706 1111 True 1352 1352 88.949 787 1877 1 chr6B.!!$R2 1090
13 TraesCS2B01G032200 chr6B 281221703 281222604 901 True 1168 1168 90.099 814 1716 1 chr6B.!!$R1 902
14 TraesCS2B01G032200 chr5D 358004935 358005899 964 True 1351 1351 91.950 785 1749 1 chr5D.!!$R1 964
15 TraesCS2B01G032200 chr3D 116062307 116063268 961 False 1315 1315 91.349 785 1750 1 chr3D.!!$F1 965
16 TraesCS2B01G032200 chr7B 172386870 172387658 788 False 1184 1184 93.790 1 788 1 chr7B.!!$F1 787
17 TraesCS2B01G032200 chr7B 415186765 415187553 788 True 1166 1166 93.300 1 791 1 chr7B.!!$R3 790
18 TraesCS2B01G032200 chr7B 548678658 548679443 785 False 1153 1153 93.130 1 786 1 chr7B.!!$F2 785
19 TraesCS2B01G032200 chr5B 240544301 240545088 787 True 1155 1155 93.147 1 787 1 chr5B.!!$R1 786

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
799 801 0.250513 GACAGCCGTGGAGGAAGAAT 59.749 55.0 0.0 0.0 45.0 2.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1964 1992 0.035739 TTTGCCTCCGAACTACACCC 59.964 55.0 0.0 0.0 0.0 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
114 115 2.047655 CAGGCCACGGCGTAAGAA 60.048 61.111 14.22 0.00 43.06 2.52
173 175 3.210232 AGTGCTATGCTCTCTACGGTA 57.790 47.619 0.00 0.00 0.00 4.02
188 190 2.340337 ACGGTAGTGTGCGGAAATTAC 58.660 47.619 0.00 0.00 0.00 1.89
244 246 2.966516 GGAGTATTCGGAGATGGAACCT 59.033 50.000 0.00 0.00 35.04 3.50
272 274 1.317613 ATGCCGAAGACAAACTGCAA 58.682 45.000 0.00 0.00 30.86 4.08
408 410 4.762289 ACAAGACTCAAGACTTTGTCCT 57.238 40.909 12.11 0.77 35.73 3.85
455 457 2.887152 GTGGAAGACAAGCTTGGTGATT 59.113 45.455 29.18 17.30 36.83 2.57
576 578 9.828039 CAATCATAATCATCATAGGCTAGCTTA 57.172 33.333 15.72 12.40 0.00 3.09
587 589 7.246763 TCATAGGCTAGCTTATAGGGTTTAGT 58.753 38.462 18.03 0.00 0.00 2.24
590 592 6.144625 AGGCTAGCTTATAGGGTTTAGTCTT 58.855 40.000 15.72 0.00 0.00 3.01
592 594 7.127493 AGGCTAGCTTATAGGGTTTAGTCTTTT 59.873 37.037 15.72 0.00 0.00 2.27
799 801 0.250513 GACAGCCGTGGAGGAAGAAT 59.749 55.000 0.00 0.00 45.00 2.40
812 814 7.230913 CGTGGAGGAAGAATAATACTTAGAGGA 59.769 40.741 0.00 0.00 0.00 3.71
843 845 2.104967 CCGGTGGTTCTAGGACACATA 58.895 52.381 2.92 0.00 36.87 2.29
866 868 2.716969 GGTTGATAGGGGAAGGCCTATT 59.283 50.000 5.16 0.00 30.45 1.73
881 883 2.412847 GCCTATTGACGTGTTGCTCAAC 60.413 50.000 0.00 5.84 41.50 3.18
904 906 6.147864 CCCGAATGGTTGAAATAATGTGAT 57.852 37.500 0.00 0.00 0.00 3.06
968 972 7.231317 ACCTCTTTACATGTCAATGTGTTCATT 59.769 33.333 0.00 0.00 46.66 2.57
1013 1017 1.839354 TGTAGGCATGGCTTCATCTGA 59.161 47.619 28.30 4.07 0.00 3.27
1023 1027 3.054213 TGGCTTCATCTGATTCCATGACA 60.054 43.478 0.00 0.00 0.00 3.58
1072 1076 1.768275 TGCTTCACAAGAGGGAGAACA 59.232 47.619 0.00 0.00 0.00 3.18
1073 1077 2.172505 TGCTTCACAAGAGGGAGAACAA 59.827 45.455 0.00 0.00 0.00 2.83
1122 1127 1.812571 GTGAAGATTCCGCCATGTTGT 59.187 47.619 0.00 0.00 0.00 3.32
1222 1227 4.562757 GCCCCAACTATGCTTATGATCGTA 60.563 45.833 0.00 0.00 0.00 3.43
1225 1230 6.166279 CCCAACTATGCTTATGATCGTACAT 58.834 40.000 0.00 0.00 0.00 2.29
1240 1245 1.127951 GTACATTTCCAACTCACGCCG 59.872 52.381 0.00 0.00 0.00 6.46
1253 1258 2.047274 CGCCGATGACCAACCACT 60.047 61.111 0.00 0.00 0.00 4.00
1348 1355 4.739137 GCCTCCTCTATGCAAGTACTTCAG 60.739 50.000 4.77 0.00 0.00 3.02
1351 1358 4.402793 TCCTCTATGCAAGTACTTCAGGTC 59.597 45.833 4.77 0.00 0.00 3.85
1383 1390 2.191128 AGTGCCAGAAGATGTCCAAC 57.809 50.000 0.00 0.00 0.00 3.77
1402 1409 7.054124 GTCCAACAGGACCAATATGAAGATTA 58.946 38.462 3.27 0.00 44.97 1.75
1470 1478 2.425312 GAGGAAGAGCATCGTCAGAAGA 59.575 50.000 0.00 0.00 45.79 2.87
1484 1492 3.026694 TCAGAAGAAGATGATGGAGCGA 58.973 45.455 0.00 0.00 0.00 4.93
1488 1496 4.161189 AGAAGAAGATGATGGAGCGAAAGA 59.839 41.667 0.00 0.00 0.00 2.52
1533 1541 4.251760 CGAAGCTTGCTCGTGAGT 57.748 55.556 2.10 0.00 0.00 3.41
1577 1588 1.294659 CTCGCAAGGCACAAGAGGAC 61.295 60.000 0.00 0.00 38.47 3.85
1657 1668 3.154710 TCAGTGGACTCGTCATGTAACT 58.845 45.455 0.00 0.00 0.00 2.24
1666 1677 4.220821 ACTCGTCATGTAACTGGATGAAGT 59.779 41.667 0.00 0.00 32.07 3.01
1731 1743 6.130582 CGCAAGAAGACATGTGTCGTGAAT 62.131 45.833 19.68 0.00 45.60 2.57
1740 1752 1.595328 TGTGTCGTGAATTTGTCGTGG 59.405 47.619 0.00 0.00 0.00 4.94
1741 1753 1.070175 GTGTCGTGAATTTGTCGTGGG 60.070 52.381 0.00 0.00 0.00 4.61
1760 1779 7.383843 GTCGTGGGTGAATTTGTATTGAATTTT 59.616 33.333 0.00 0.00 0.00 1.82
1810 1829 8.339714 CAATTTCTGTGATTTGTCAGCAATTTT 58.660 29.630 0.00 0.00 36.17 1.82
1843 1871 1.277273 CTGTTGTGCTGAGATGAGGGA 59.723 52.381 0.00 0.00 0.00 4.20
1848 1876 3.229293 TGTGCTGAGATGAGGGATAGAG 58.771 50.000 0.00 0.00 0.00 2.43
1854 1882 3.139957 TGAGATGAGGGATAGAGCAGAGT 59.860 47.826 0.00 0.00 0.00 3.24
1859 1887 4.211125 TGAGGGATAGAGCAGAGTAAGTG 58.789 47.826 0.00 0.00 0.00 3.16
1877 1905 6.935208 AGTAAGTGCTCTGTTTTAAACCCTAG 59.065 38.462 5.32 1.77 0.00 3.02
1880 1908 4.459337 GTGCTCTGTTTTAAACCCTAGCAT 59.541 41.667 22.22 0.00 39.72 3.79
1881 1909 4.458989 TGCTCTGTTTTAAACCCTAGCATG 59.541 41.667 18.27 0.00 35.70 4.06
1882 1910 4.459337 GCTCTGTTTTAAACCCTAGCATGT 59.541 41.667 16.04 0.00 32.75 3.21
1883 1911 5.646360 GCTCTGTTTTAAACCCTAGCATGTA 59.354 40.000 16.04 0.00 32.75 2.29
1884 1912 6.183360 GCTCTGTTTTAAACCCTAGCATGTAG 60.183 42.308 16.04 0.00 32.75 2.74
1885 1913 6.177610 TCTGTTTTAAACCCTAGCATGTAGG 58.822 40.000 5.32 12.08 34.52 3.18
1886 1914 5.883180 TGTTTTAAACCCTAGCATGTAGGT 58.117 37.500 15.76 6.48 32.88 3.08
1887 1915 5.708230 TGTTTTAAACCCTAGCATGTAGGTG 59.292 40.000 15.76 11.40 32.88 4.00
1888 1916 5.765576 TTTAAACCCTAGCATGTAGGTGA 57.234 39.130 15.76 0.86 32.88 4.02
1889 1917 3.914426 AAACCCTAGCATGTAGGTGAG 57.086 47.619 15.76 7.24 32.88 3.51
1890 1918 2.848678 ACCCTAGCATGTAGGTGAGA 57.151 50.000 15.76 0.00 32.88 3.27
1891 1919 3.336509 ACCCTAGCATGTAGGTGAGAT 57.663 47.619 15.76 0.33 32.88 2.75
1892 1920 3.235200 ACCCTAGCATGTAGGTGAGATC 58.765 50.000 15.76 0.00 32.88 2.75
1893 1921 2.564947 CCCTAGCATGTAGGTGAGATCC 59.435 54.545 15.76 0.00 32.88 3.36
1894 1922 3.505386 CCTAGCATGTAGGTGAGATCCT 58.495 50.000 11.23 0.00 41.20 3.24
1895 1923 3.900601 CCTAGCATGTAGGTGAGATCCTT 59.099 47.826 11.23 0.00 38.86 3.36
1896 1924 3.834489 AGCATGTAGGTGAGATCCTTG 57.166 47.619 0.00 0.00 38.86 3.61
1897 1925 3.378512 AGCATGTAGGTGAGATCCTTGA 58.621 45.455 0.00 0.00 38.86 3.02
1898 1926 3.133721 AGCATGTAGGTGAGATCCTTGAC 59.866 47.826 0.00 0.00 38.86 3.18
1899 1927 3.118629 GCATGTAGGTGAGATCCTTGACA 60.119 47.826 0.00 0.00 38.86 3.58
1900 1928 4.691175 CATGTAGGTGAGATCCTTGACAG 58.309 47.826 0.00 0.00 38.86 3.51
1901 1929 3.779444 TGTAGGTGAGATCCTTGACAGT 58.221 45.455 0.00 0.00 38.86 3.55
1902 1930 3.511540 TGTAGGTGAGATCCTTGACAGTG 59.488 47.826 0.00 0.00 38.86 3.66
1903 1931 1.905215 AGGTGAGATCCTTGACAGTGG 59.095 52.381 0.00 0.00 33.52 4.00
1904 1932 1.677217 GGTGAGATCCTTGACAGTGGC 60.677 57.143 0.00 0.00 0.00 5.01
1905 1933 1.277557 GTGAGATCCTTGACAGTGGCT 59.722 52.381 0.00 0.00 0.00 4.75
1906 1934 2.497675 GTGAGATCCTTGACAGTGGCTA 59.502 50.000 0.00 0.00 0.00 3.93
1907 1935 3.133721 GTGAGATCCTTGACAGTGGCTAT 59.866 47.826 0.00 0.00 0.00 2.97
1908 1936 3.776969 TGAGATCCTTGACAGTGGCTATT 59.223 43.478 0.00 0.00 0.00 1.73
1909 1937 4.962362 TGAGATCCTTGACAGTGGCTATTA 59.038 41.667 0.00 0.00 0.00 0.98
1910 1938 5.425217 TGAGATCCTTGACAGTGGCTATTAA 59.575 40.000 0.00 0.00 0.00 1.40
1911 1939 5.923204 AGATCCTTGACAGTGGCTATTAAG 58.077 41.667 0.00 0.00 0.00 1.85
1912 1940 5.426833 AGATCCTTGACAGTGGCTATTAAGT 59.573 40.000 0.00 0.00 0.00 2.24
1913 1941 4.832248 TCCTTGACAGTGGCTATTAAGTG 58.168 43.478 0.00 0.00 0.00 3.16
1914 1942 3.941483 CCTTGACAGTGGCTATTAAGTGG 59.059 47.826 0.00 0.00 0.00 4.00
1915 1943 4.323485 CCTTGACAGTGGCTATTAAGTGGA 60.323 45.833 0.00 0.00 0.00 4.02
1916 1944 5.431765 CTTGACAGTGGCTATTAAGTGGAT 58.568 41.667 0.00 0.00 0.00 3.41
1917 1945 4.769688 TGACAGTGGCTATTAAGTGGATG 58.230 43.478 0.00 0.00 0.00 3.51
1918 1946 4.130118 GACAGTGGCTATTAAGTGGATGG 58.870 47.826 0.00 0.00 0.00 3.51
1919 1947 3.523564 ACAGTGGCTATTAAGTGGATGGT 59.476 43.478 0.00 0.00 0.00 3.55
1920 1948 3.879295 CAGTGGCTATTAAGTGGATGGTG 59.121 47.826 0.00 0.00 0.00 4.17
1921 1949 3.117888 AGTGGCTATTAAGTGGATGGTGG 60.118 47.826 0.00 0.00 0.00 4.61
1922 1950 2.849943 TGGCTATTAAGTGGATGGTGGT 59.150 45.455 0.00 0.00 0.00 4.16
1923 1951 3.268334 TGGCTATTAAGTGGATGGTGGTT 59.732 43.478 0.00 0.00 0.00 3.67
1924 1952 3.632145 GGCTATTAAGTGGATGGTGGTTG 59.368 47.826 0.00 0.00 0.00 3.77
1925 1953 3.632145 GCTATTAAGTGGATGGTGGTTGG 59.368 47.826 0.00 0.00 0.00 3.77
1926 1954 2.595750 TTAAGTGGATGGTGGTTGGG 57.404 50.000 0.00 0.00 0.00 4.12
1927 1955 0.701731 TAAGTGGATGGTGGTTGGGG 59.298 55.000 0.00 0.00 0.00 4.96
1928 1956 2.679996 GTGGATGGTGGTTGGGGC 60.680 66.667 0.00 0.00 0.00 5.80
1929 1957 3.188903 TGGATGGTGGTTGGGGCA 61.189 61.111 0.00 0.00 0.00 5.36
1930 1958 2.364160 GGATGGTGGTTGGGGCAT 59.636 61.111 0.00 0.00 0.00 4.40
1931 1959 1.217747 TGGATGGTGGTTGGGGCATA 61.218 55.000 0.00 0.00 0.00 3.14
1932 1960 0.188342 GGATGGTGGTTGGGGCATAT 59.812 55.000 0.00 0.00 0.00 1.78
1933 1961 1.427368 GGATGGTGGTTGGGGCATATA 59.573 52.381 0.00 0.00 0.00 0.86
1934 1962 2.158385 GGATGGTGGTTGGGGCATATAA 60.158 50.000 0.00 0.00 0.00 0.98
1935 1963 3.502119 GGATGGTGGTTGGGGCATATAAT 60.502 47.826 0.00 0.00 0.00 1.28
1936 1964 3.697190 TGGTGGTTGGGGCATATAATT 57.303 42.857 0.00 0.00 0.00 1.40
1937 1965 3.571590 TGGTGGTTGGGGCATATAATTC 58.428 45.455 0.00 0.00 0.00 2.17
1938 1966 2.897326 GGTGGTTGGGGCATATAATTCC 59.103 50.000 0.00 0.00 0.00 3.01
1939 1967 2.897326 GTGGTTGGGGCATATAATTCCC 59.103 50.000 0.00 0.00 39.81 3.97
1943 1971 3.978876 GGGCATATAATTCCCCGCT 57.021 52.632 0.00 0.00 33.91 5.52
1944 1972 2.215942 GGGCATATAATTCCCCGCTT 57.784 50.000 0.00 0.00 33.91 4.68
1945 1973 2.525368 GGGCATATAATTCCCCGCTTT 58.475 47.619 0.00 0.00 33.91 3.51
1946 1974 2.492088 GGGCATATAATTCCCCGCTTTC 59.508 50.000 0.00 0.00 33.91 2.62
1947 1975 3.153919 GGCATATAATTCCCCGCTTTCA 58.846 45.455 0.00 0.00 0.00 2.69
1948 1976 3.191371 GGCATATAATTCCCCGCTTTCAG 59.809 47.826 0.00 0.00 0.00 3.02
1949 1977 3.366374 GCATATAATTCCCCGCTTTCAGC 60.366 47.826 0.00 0.00 38.02 4.26
1950 1978 1.692411 ATAATTCCCCGCTTTCAGCC 58.308 50.000 0.00 0.00 38.18 4.85
1951 1979 0.395173 TAATTCCCCGCTTTCAGCCC 60.395 55.000 0.00 0.00 38.18 5.19
1952 1980 3.662117 ATTCCCCGCTTTCAGCCCC 62.662 63.158 0.00 0.00 38.18 5.80
1955 1983 4.676951 CCCGCTTTCAGCCCCCAA 62.677 66.667 0.00 0.00 38.18 4.12
1956 1984 3.373565 CCGCTTTCAGCCCCCAAC 61.374 66.667 0.00 0.00 38.18 3.77
1957 1985 3.373565 CGCTTTCAGCCCCCAACC 61.374 66.667 0.00 0.00 38.18 3.77
1958 1986 2.997315 GCTTTCAGCCCCCAACCC 60.997 66.667 0.00 0.00 34.48 4.11
1959 1987 2.525592 CTTTCAGCCCCCAACCCA 59.474 61.111 0.00 0.00 0.00 4.51
1960 1988 1.607467 CTTTCAGCCCCCAACCCAG 60.607 63.158 0.00 0.00 0.00 4.45
1961 1989 3.159104 TTTCAGCCCCCAACCCAGG 62.159 63.158 0.00 0.00 0.00 4.45
1975 2003 1.079127 CCAGGCTGGGTGTAGTTCG 60.079 63.158 26.34 0.00 32.67 3.95
1976 2004 1.079127 CAGGCTGGGTGTAGTTCGG 60.079 63.158 6.61 0.00 0.00 4.30
1977 2005 1.229082 AGGCTGGGTGTAGTTCGGA 60.229 57.895 0.00 0.00 0.00 4.55
1978 2006 1.218316 GGCTGGGTGTAGTTCGGAG 59.782 63.158 0.00 0.00 0.00 4.63
1979 2007 1.218316 GCTGGGTGTAGTTCGGAGG 59.782 63.158 0.00 0.00 0.00 4.30
1980 2008 1.218316 CTGGGTGTAGTTCGGAGGC 59.782 63.158 0.00 0.00 0.00 4.70
1981 2009 1.534476 TGGGTGTAGTTCGGAGGCA 60.534 57.895 0.00 0.00 0.00 4.75
1982 2010 1.122632 TGGGTGTAGTTCGGAGGCAA 61.123 55.000 0.00 0.00 0.00 4.52
1983 2011 0.035739 GGGTGTAGTTCGGAGGCAAA 59.964 55.000 0.00 0.00 0.00 3.68
1984 2012 1.439679 GGTGTAGTTCGGAGGCAAAG 58.560 55.000 0.00 0.00 0.00 2.77
1985 2013 0.796927 GTGTAGTTCGGAGGCAAAGC 59.203 55.000 0.00 0.00 0.00 3.51
1986 2014 0.685097 TGTAGTTCGGAGGCAAAGCT 59.315 50.000 0.00 0.00 0.00 3.74
1987 2015 1.071699 TGTAGTTCGGAGGCAAAGCTT 59.928 47.619 0.00 0.00 0.00 3.74
1988 2016 1.732809 GTAGTTCGGAGGCAAAGCTTC 59.267 52.381 0.00 0.00 33.80 3.86
1992 2020 3.267974 GGAGGCAAAGCTTCCGTG 58.732 61.111 0.00 0.00 44.41 4.94
1993 2021 1.302511 GGAGGCAAAGCTTCCGTGA 60.303 57.895 0.00 0.00 44.41 4.35
1994 2022 0.678048 GGAGGCAAAGCTTCCGTGAT 60.678 55.000 0.00 0.00 44.41 3.06
1995 2023 0.449388 GAGGCAAAGCTTCCGTGATG 59.551 55.000 0.00 0.00 0.00 3.07
1996 2024 0.962356 AGGCAAAGCTTCCGTGATGG 60.962 55.000 0.00 0.00 40.09 3.51
1997 2025 1.153958 GCAAAGCTTCCGTGATGGC 60.154 57.895 0.00 0.00 37.80 4.40
1998 2026 1.135315 CAAAGCTTCCGTGATGGCG 59.865 57.895 0.00 0.00 37.80 5.69
1999 2027 1.003839 AAAGCTTCCGTGATGGCGA 60.004 52.632 0.00 0.00 37.80 5.54
2000 2028 1.021390 AAAGCTTCCGTGATGGCGAG 61.021 55.000 0.00 0.00 37.80 5.03
2001 2029 1.888436 AAGCTTCCGTGATGGCGAGA 61.888 55.000 0.00 0.00 37.80 4.04
2002 2030 1.880340 GCTTCCGTGATGGCGAGAG 60.880 63.158 0.00 0.00 37.80 3.20
2003 2031 1.809869 CTTCCGTGATGGCGAGAGA 59.190 57.895 0.00 0.00 37.80 3.10
2004 2032 0.526524 CTTCCGTGATGGCGAGAGAC 60.527 60.000 0.00 0.00 42.12 3.36
2005 2033 0.965866 TTCCGTGATGGCGAGAGACT 60.966 55.000 0.00 0.00 42.42 3.24
2006 2034 1.226802 CCGTGATGGCGAGAGACTG 60.227 63.158 0.00 0.00 42.42 3.51
2007 2035 1.875813 CGTGATGGCGAGAGACTGC 60.876 63.158 0.00 0.00 42.42 4.40
2008 2036 1.216444 GTGATGGCGAGAGACTGCA 59.784 57.895 0.00 0.00 42.42 4.41
2009 2037 0.179089 GTGATGGCGAGAGACTGCAT 60.179 55.000 0.00 0.00 42.42 3.96
2010 2038 0.538584 TGATGGCGAGAGACTGCATT 59.461 50.000 0.00 0.00 42.42 3.56
2011 2039 1.756538 TGATGGCGAGAGACTGCATTA 59.243 47.619 0.00 0.00 42.42 1.90
2012 2040 2.168313 TGATGGCGAGAGACTGCATTAA 59.832 45.455 0.00 0.00 42.42 1.40
2013 2041 2.299993 TGGCGAGAGACTGCATTAAG 57.700 50.000 0.00 0.00 42.42 1.85
2014 2042 0.933796 GGCGAGAGACTGCATTAAGC 59.066 55.000 0.00 0.00 45.96 3.09
2015 2043 0.933796 GCGAGAGACTGCATTAAGCC 59.066 55.000 0.00 0.00 44.83 4.35
2016 2044 1.576356 CGAGAGACTGCATTAAGCCC 58.424 55.000 0.00 0.00 44.83 5.19
2017 2045 1.134699 CGAGAGACTGCATTAAGCCCA 60.135 52.381 0.00 0.00 44.83 5.36
2018 2046 2.677902 CGAGAGACTGCATTAAGCCCAA 60.678 50.000 0.00 0.00 44.83 4.12
2019 2047 3.549794 GAGAGACTGCATTAAGCCCAAT 58.450 45.455 0.00 0.00 44.83 3.16
2020 2048 3.285484 AGAGACTGCATTAAGCCCAATG 58.715 45.455 3.97 3.97 44.83 2.82
2021 2049 3.019564 GAGACTGCATTAAGCCCAATGT 58.980 45.455 9.04 0.00 44.83 2.71
2022 2050 3.434309 AGACTGCATTAAGCCCAATGTT 58.566 40.909 9.04 0.00 44.83 2.71
2023 2051 3.834231 AGACTGCATTAAGCCCAATGTTT 59.166 39.130 9.04 0.00 44.83 2.83
2024 2052 4.082026 AGACTGCATTAAGCCCAATGTTTC 60.082 41.667 9.04 4.51 44.83 2.78
2025 2053 3.181397 CTGCATTAAGCCCAATGTTTCG 58.819 45.455 9.04 0.00 44.83 3.46
2026 2054 2.560542 TGCATTAAGCCCAATGTTTCGT 59.439 40.909 9.04 0.00 44.83 3.85
2027 2055 3.179048 GCATTAAGCCCAATGTTTCGTC 58.821 45.455 9.04 0.00 38.04 4.20
2028 2056 3.119495 GCATTAAGCCCAATGTTTCGTCT 60.119 43.478 9.04 0.00 38.04 4.18
2029 2057 4.095782 GCATTAAGCCCAATGTTTCGTCTA 59.904 41.667 9.04 0.00 38.04 2.59
2030 2058 5.392595 GCATTAAGCCCAATGTTTCGTCTAA 60.393 40.000 9.04 0.00 38.04 2.10
2031 2059 5.873179 TTAAGCCCAATGTTTCGTCTAAG 57.127 39.130 0.00 0.00 0.00 2.18
2032 2060 3.695830 AGCCCAATGTTTCGTCTAAGA 57.304 42.857 0.00 0.00 0.00 2.10
2033 2061 3.600388 AGCCCAATGTTTCGTCTAAGAG 58.400 45.455 0.00 0.00 0.00 2.85
2034 2062 2.096013 GCCCAATGTTTCGTCTAAGAGC 59.904 50.000 0.00 0.00 0.00 4.09
2035 2063 2.348666 CCCAATGTTTCGTCTAAGAGCG 59.651 50.000 0.00 0.00 0.00 5.03
2036 2064 3.250744 CCAATGTTTCGTCTAAGAGCGA 58.749 45.455 0.00 0.00 35.17 4.93
2037 2065 3.678072 CCAATGTTTCGTCTAAGAGCGAA 59.322 43.478 0.00 0.00 43.98 4.70
2053 2081 2.474410 CGAAAGCTGGGTAGGAGTTT 57.526 50.000 0.00 0.00 0.00 2.66
2054 2082 2.076863 CGAAAGCTGGGTAGGAGTTTG 58.923 52.381 0.00 0.00 0.00 2.93
2055 2083 2.550208 CGAAAGCTGGGTAGGAGTTTGT 60.550 50.000 0.00 0.00 0.00 2.83
2056 2084 2.568623 AAGCTGGGTAGGAGTTTGTG 57.431 50.000 0.00 0.00 0.00 3.33
2057 2085 0.693049 AGCTGGGTAGGAGTTTGTGG 59.307 55.000 0.00 0.00 0.00 4.17
2058 2086 0.690762 GCTGGGTAGGAGTTTGTGGA 59.309 55.000 0.00 0.00 0.00 4.02
2059 2087 1.282157 GCTGGGTAGGAGTTTGTGGAT 59.718 52.381 0.00 0.00 0.00 3.41
2060 2088 2.681097 GCTGGGTAGGAGTTTGTGGATC 60.681 54.545 0.00 0.00 0.00 3.36
2061 2089 2.840651 CTGGGTAGGAGTTTGTGGATCT 59.159 50.000 0.00 0.00 0.00 2.75
2062 2090 2.571653 TGGGTAGGAGTTTGTGGATCTG 59.428 50.000 0.00 0.00 0.00 2.90
2063 2091 2.633488 GGTAGGAGTTTGTGGATCTGC 58.367 52.381 0.00 0.00 0.00 4.26
2064 2092 2.027192 GGTAGGAGTTTGTGGATCTGCA 60.027 50.000 0.00 0.00 0.00 4.41
2065 2093 2.486472 AGGAGTTTGTGGATCTGCAG 57.514 50.000 7.63 7.63 0.00 4.41
2066 2094 1.004044 AGGAGTTTGTGGATCTGCAGG 59.996 52.381 15.13 0.00 0.00 4.85
2067 2095 1.457346 GAGTTTGTGGATCTGCAGGG 58.543 55.000 15.13 0.00 0.00 4.45
2068 2096 0.610232 AGTTTGTGGATCTGCAGGGC 60.610 55.000 15.13 6.01 0.00 5.19
2069 2097 0.610232 GTTTGTGGATCTGCAGGGCT 60.610 55.000 15.13 0.00 0.00 5.19
2070 2098 0.609957 TTTGTGGATCTGCAGGGCTG 60.610 55.000 15.13 0.00 0.00 4.85
2071 2099 2.124403 GTGGATCTGCAGGGCTGG 60.124 66.667 15.13 0.00 0.00 4.85
2072 2100 3.414193 TGGATCTGCAGGGCTGGG 61.414 66.667 15.13 0.00 0.00 4.45
2073 2101 4.891037 GGATCTGCAGGGCTGGGC 62.891 72.222 15.13 0.00 0.00 5.36
2074 2102 3.806667 GATCTGCAGGGCTGGGCT 61.807 66.667 15.13 0.00 0.00 5.19
2075 2103 3.771110 GATCTGCAGGGCTGGGCTC 62.771 68.421 15.13 0.00 0.00 4.70
2082 2110 3.161450 GGGCTGGGCTCGGTGATA 61.161 66.667 0.00 0.00 0.00 2.15
2083 2111 2.423446 GGCTGGGCTCGGTGATAG 59.577 66.667 0.00 0.00 0.00 2.08
2084 2112 2.134287 GGCTGGGCTCGGTGATAGA 61.134 63.158 0.00 0.00 0.00 1.98
2085 2113 1.068250 GCTGGGCTCGGTGATAGAC 59.932 63.158 0.00 0.00 0.00 2.59
2086 2114 1.676678 GCTGGGCTCGGTGATAGACA 61.677 60.000 0.00 0.00 0.00 3.41
2096 2124 2.802787 GTGATAGACACCTGATCGGG 57.197 55.000 19.66 19.66 43.05 5.14
2097 2125 2.032620 GTGATAGACACCTGATCGGGT 58.967 52.381 21.21 21.21 43.05 5.28
2098 2126 2.034812 GTGATAGACACCTGATCGGGTC 59.965 54.545 24.03 13.54 43.05 4.46
2099 2127 1.614413 GATAGACACCTGATCGGGTCC 59.386 57.143 24.03 17.42 37.52 4.46
2100 2128 0.750546 TAGACACCTGATCGGGTCCG 60.751 60.000 24.03 15.78 37.52 4.79
2109 2137 2.831284 TCGGGTCCGATCGATGCA 60.831 61.111 18.66 0.00 44.01 3.96
2110 2138 2.355126 CGGGTCCGATCGATGCAG 60.355 66.667 18.66 0.00 42.83 4.41
2111 2139 2.845550 CGGGTCCGATCGATGCAGA 61.846 63.158 18.66 1.16 42.83 4.26
2112 2140 1.300233 GGGTCCGATCGATGCAGAC 60.300 63.158 18.66 14.37 0.00 3.51
2113 2141 1.300233 GGTCCGATCGATGCAGACC 60.300 63.158 18.66 19.47 40.21 3.85
2114 2142 1.736586 GTCCGATCGATGCAGACCT 59.263 57.895 18.66 0.00 0.00 3.85
2115 2143 0.103208 GTCCGATCGATGCAGACCTT 59.897 55.000 18.66 0.00 0.00 3.50
2116 2144 0.103026 TCCGATCGATGCAGACCTTG 59.897 55.000 18.66 0.00 0.00 3.61
2117 2145 0.103026 CCGATCGATGCAGACCTTGA 59.897 55.000 18.66 0.00 0.00 3.02
2118 2146 1.203928 CGATCGATGCAGACCTTGAC 58.796 55.000 10.26 0.00 0.00 3.18
2119 2147 1.203928 GATCGATGCAGACCTTGACG 58.796 55.000 0.54 0.00 0.00 4.35
2120 2148 0.179100 ATCGATGCAGACCTTGACGG 60.179 55.000 0.00 0.00 39.35 4.79
2128 2156 3.866539 ACCTTGACGGTTCGGAGT 58.133 55.556 0.00 0.00 46.37 3.85
2129 2157 2.130512 ACCTTGACGGTTCGGAGTT 58.869 52.632 0.00 0.00 46.37 3.01
2130 2158 0.249741 ACCTTGACGGTTCGGAGTTG 60.250 55.000 0.00 0.00 46.37 3.16
2131 2159 0.249741 CCTTGACGGTTCGGAGTTGT 60.250 55.000 0.00 0.00 0.00 3.32
2132 2160 1.137513 CTTGACGGTTCGGAGTTGTC 58.862 55.000 0.00 0.00 0.00 3.18
2133 2161 0.595567 TTGACGGTTCGGAGTTGTCG 60.596 55.000 0.00 0.00 32.32 4.35
2134 2162 1.008079 GACGGTTCGGAGTTGTCGT 60.008 57.895 0.00 0.00 0.00 4.34
2135 2163 1.000736 GACGGTTCGGAGTTGTCGTC 61.001 60.000 0.00 0.00 39.73 4.20
2136 2164 1.731969 CGGTTCGGAGTTGTCGTCC 60.732 63.158 0.00 0.00 0.00 4.79
2137 2165 1.364901 GGTTCGGAGTTGTCGTCCA 59.635 57.895 0.00 0.00 33.14 4.02
2138 2166 0.666577 GGTTCGGAGTTGTCGTCCAG 60.667 60.000 0.00 0.00 33.14 3.86
2139 2167 0.313043 GTTCGGAGTTGTCGTCCAGA 59.687 55.000 0.00 0.00 33.14 3.86
2140 2168 0.596577 TTCGGAGTTGTCGTCCAGAG 59.403 55.000 0.00 0.00 33.14 3.35
2141 2169 1.213013 CGGAGTTGTCGTCCAGAGG 59.787 63.158 0.00 0.00 33.14 3.69
2142 2170 1.079750 GGAGTTGTCGTCCAGAGGC 60.080 63.158 0.00 0.00 33.84 4.70
2143 2171 1.444553 GAGTTGTCGTCCAGAGGCG 60.445 63.158 0.00 0.00 0.00 5.52
2144 2172 1.863662 GAGTTGTCGTCCAGAGGCGA 61.864 60.000 0.00 0.00 34.54 5.54
2145 2173 1.444553 GTTGTCGTCCAGAGGCGAG 60.445 63.158 0.00 0.00 37.82 5.03
2146 2174 1.901948 TTGTCGTCCAGAGGCGAGT 60.902 57.895 0.00 0.00 37.82 4.18
2147 2175 1.863662 TTGTCGTCCAGAGGCGAGTC 61.864 60.000 0.00 0.00 37.82 3.36
2148 2176 2.750637 TCGTCCAGAGGCGAGTCC 60.751 66.667 0.00 0.00 32.98 3.85
2149 2177 3.062466 CGTCCAGAGGCGAGTCCA 61.062 66.667 0.00 0.00 37.29 4.02
2150 2178 2.636412 CGTCCAGAGGCGAGTCCAA 61.636 63.158 0.00 0.00 37.29 3.53
2151 2179 1.216710 GTCCAGAGGCGAGTCCAAG 59.783 63.158 0.00 0.00 37.29 3.61
2152 2180 1.076727 TCCAGAGGCGAGTCCAAGA 59.923 57.895 0.00 0.00 37.29 3.02
2153 2181 0.324738 TCCAGAGGCGAGTCCAAGAT 60.325 55.000 0.00 0.00 37.29 2.40
2154 2182 0.539051 CCAGAGGCGAGTCCAAGATT 59.461 55.000 0.00 0.00 37.29 2.40
2155 2183 1.649664 CAGAGGCGAGTCCAAGATTG 58.350 55.000 0.00 0.00 37.29 2.67
2156 2184 0.107945 AGAGGCGAGTCCAAGATTGC 60.108 55.000 0.00 0.00 37.29 3.56
2157 2185 0.391661 GAGGCGAGTCCAAGATTGCA 60.392 55.000 0.00 0.00 37.29 4.08
2158 2186 0.254178 AGGCGAGTCCAAGATTGCAT 59.746 50.000 0.00 0.00 37.29 3.96
2159 2187 0.659957 GGCGAGTCCAAGATTGCATC 59.340 55.000 0.00 0.00 34.01 3.91
2160 2188 1.661341 GCGAGTCCAAGATTGCATCT 58.339 50.000 0.00 0.00 42.61 2.90
2161 2189 1.329906 GCGAGTCCAAGATTGCATCTG 59.670 52.381 0.00 0.00 40.13 2.90
2162 2190 1.938577 CGAGTCCAAGATTGCATCTGG 59.061 52.381 0.00 0.00 40.13 3.86
2166 2194 2.431954 CCAAGATTGCATCTGGGTCT 57.568 50.000 10.05 0.00 44.19 3.85
2167 2195 2.295885 CCAAGATTGCATCTGGGTCTC 58.704 52.381 10.05 0.00 44.19 3.36
2168 2196 2.295885 CAAGATTGCATCTGGGTCTCC 58.704 52.381 0.00 0.00 40.13 3.71
2169 2197 0.467384 AGATTGCATCTGGGTCTCCG 59.533 55.000 0.00 0.00 38.44 4.63
2170 2198 0.465705 GATTGCATCTGGGTCTCCGA 59.534 55.000 0.00 0.00 35.24 4.55
2171 2199 1.071385 GATTGCATCTGGGTCTCCGAT 59.929 52.381 0.00 0.00 35.24 4.18
2172 2200 0.465705 TTGCATCTGGGTCTCCGATC 59.534 55.000 0.00 0.00 35.24 3.69
2173 2201 1.006805 GCATCTGGGTCTCCGATCG 60.007 63.158 8.51 8.51 35.24 3.69
2174 2202 1.456196 GCATCTGGGTCTCCGATCGA 61.456 60.000 18.66 1.60 35.24 3.59
2175 2203 1.032794 CATCTGGGTCTCCGATCGAA 58.967 55.000 18.66 0.00 35.24 3.71
2176 2204 1.409064 CATCTGGGTCTCCGATCGAAA 59.591 52.381 18.66 3.09 35.24 3.46
2177 2205 1.103803 TCTGGGTCTCCGATCGAAAG 58.896 55.000 18.66 13.61 35.24 2.62
2178 2206 0.818296 CTGGGTCTCCGATCGAAAGT 59.182 55.000 18.66 0.00 35.24 2.66
2179 2207 1.204941 CTGGGTCTCCGATCGAAAGTT 59.795 52.381 18.66 0.00 35.24 2.66
2180 2208 1.203994 TGGGTCTCCGATCGAAAGTTC 59.796 52.381 18.66 10.67 35.24 3.01
2181 2209 1.471153 GGGTCTCCGATCGAAAGTTCC 60.471 57.143 18.66 17.41 0.00 3.62
2182 2210 1.203994 GGTCTCCGATCGAAAGTTCCA 59.796 52.381 18.66 0.00 0.00 3.53
2183 2211 2.159085 GGTCTCCGATCGAAAGTTCCAT 60.159 50.000 18.66 0.00 0.00 3.41
2184 2212 2.860735 GTCTCCGATCGAAAGTTCCATG 59.139 50.000 18.66 0.00 0.00 3.66
2185 2213 2.758423 TCTCCGATCGAAAGTTCCATGA 59.242 45.455 18.66 0.00 0.00 3.07
2186 2214 3.384789 TCTCCGATCGAAAGTTCCATGAT 59.615 43.478 18.66 0.00 0.00 2.45
2187 2215 4.583073 TCTCCGATCGAAAGTTCCATGATA 59.417 41.667 18.66 0.00 0.00 2.15
2188 2216 4.871513 TCCGATCGAAAGTTCCATGATAG 58.128 43.478 18.66 0.00 0.00 2.08
2189 2217 4.583073 TCCGATCGAAAGTTCCATGATAGA 59.417 41.667 18.66 0.00 0.00 1.98
2190 2218 5.068591 TCCGATCGAAAGTTCCATGATAGAA 59.931 40.000 18.66 0.00 0.00 2.10
2191 2219 5.753438 CCGATCGAAAGTTCCATGATAGAAA 59.247 40.000 18.66 0.00 0.00 2.52
2192 2220 6.257849 CCGATCGAAAGTTCCATGATAGAAAA 59.742 38.462 18.66 0.00 0.00 2.29
2193 2221 7.340699 CGATCGAAAGTTCCATGATAGAAAAG 58.659 38.462 10.26 0.00 0.00 2.27
2194 2222 7.222805 CGATCGAAAGTTCCATGATAGAAAAGA 59.777 37.037 10.26 0.00 0.00 2.52
2195 2223 7.834068 TCGAAAGTTCCATGATAGAAAAGAG 57.166 36.000 0.00 0.00 0.00 2.85
2196 2224 7.386851 TCGAAAGTTCCATGATAGAAAAGAGT 58.613 34.615 0.00 0.00 0.00 3.24
2197 2225 7.545965 TCGAAAGTTCCATGATAGAAAAGAGTC 59.454 37.037 0.00 0.00 0.00 3.36
2198 2226 7.201565 CGAAAGTTCCATGATAGAAAAGAGTCC 60.202 40.741 0.00 0.00 0.00 3.85
2199 2227 5.665459 AGTTCCATGATAGAAAAGAGTCCG 58.335 41.667 0.00 0.00 0.00 4.79
2200 2228 4.672587 TCCATGATAGAAAAGAGTCCGG 57.327 45.455 0.00 0.00 0.00 5.14
2201 2229 3.134458 CCATGATAGAAAAGAGTCCGGC 58.866 50.000 0.00 0.00 0.00 6.13
2202 2230 2.579207 TGATAGAAAAGAGTCCGGCG 57.421 50.000 0.00 0.00 0.00 6.46
2203 2231 1.136305 TGATAGAAAAGAGTCCGGCGG 59.864 52.381 22.51 22.51 0.00 6.13
2204 2232 0.464452 ATAGAAAAGAGTCCGGCGGG 59.536 55.000 27.98 7.65 0.00 6.13
2205 2233 1.610554 TAGAAAAGAGTCCGGCGGGG 61.611 60.000 27.98 0.32 37.02 5.73
2206 2234 3.971109 GAAAAGAGTCCGGCGGGGG 62.971 68.421 27.98 0.00 36.01 5.40
2208 2236 4.798682 AAGAGTCCGGCGGGGGAT 62.799 66.667 27.98 9.57 38.61 3.85
2211 2239 4.880426 AGTCCGGCGGGGGATGAT 62.880 66.667 27.98 1.18 38.61 2.45
2212 2240 4.315941 GTCCGGCGGGGGATGATC 62.316 72.222 27.98 3.07 38.61 2.92
2215 2243 4.008933 CGGCGGGGGATGATCCTC 62.009 72.222 11.87 7.21 35.85 3.71
2221 2249 3.971894 GGGATGATCCTCCCGTGT 58.028 61.111 19.08 0.00 45.41 4.49
2222 2250 2.221918 GGGATGATCCTCCCGTGTT 58.778 57.895 19.08 0.00 45.41 3.32
2223 2251 0.106894 GGGATGATCCTCCCGTGTTC 59.893 60.000 19.08 0.00 45.41 3.18
2224 2252 0.830648 GGATGATCCTCCCGTGTTCA 59.169 55.000 3.71 0.00 32.53 3.18
2225 2253 1.202580 GGATGATCCTCCCGTGTTCAG 60.203 57.143 3.71 0.00 32.53 3.02
2226 2254 1.757118 GATGATCCTCCCGTGTTCAGA 59.243 52.381 0.00 0.00 0.00 3.27
2227 2255 0.895530 TGATCCTCCCGTGTTCAGAC 59.104 55.000 0.00 0.00 0.00 3.51
2228 2256 0.179134 GATCCTCCCGTGTTCAGACG 60.179 60.000 0.00 0.00 39.13 4.18
2229 2257 0.611062 ATCCTCCCGTGTTCAGACGA 60.611 55.000 0.00 0.00 42.10 4.20
2230 2258 0.611062 TCCTCCCGTGTTCAGACGAT 60.611 55.000 0.00 0.00 42.10 3.73
2231 2259 1.100510 CCTCCCGTGTTCAGACGATA 58.899 55.000 0.00 0.00 42.10 2.92
2232 2260 1.202268 CCTCCCGTGTTCAGACGATAC 60.202 57.143 0.00 0.00 42.10 2.24
2233 2261 0.448990 TCCCGTGTTCAGACGATACG 59.551 55.000 0.00 0.00 42.10 3.06
2234 2262 0.448990 CCCGTGTTCAGACGATACGA 59.551 55.000 0.00 0.00 42.10 3.43
2235 2263 1.531912 CCGTGTTCAGACGATACGAC 58.468 55.000 0.00 0.00 42.10 4.34
2236 2264 1.531912 CGTGTTCAGACGATACGACC 58.468 55.000 0.00 0.00 42.10 4.79
2237 2265 1.129998 CGTGTTCAGACGATACGACCT 59.870 52.381 0.00 0.00 42.10 3.85
2238 2266 2.516923 GTGTTCAGACGATACGACCTG 58.483 52.381 0.00 0.00 34.59 4.00
2239 2267 1.135489 TGTTCAGACGATACGACCTGC 60.135 52.381 0.00 0.00 33.87 4.85
2240 2268 1.132643 GTTCAGACGATACGACCTGCT 59.867 52.381 0.00 0.00 33.87 4.24
2241 2269 1.460504 TCAGACGATACGACCTGCTT 58.539 50.000 0.00 0.00 33.87 3.91
2242 2270 1.400846 TCAGACGATACGACCTGCTTC 59.599 52.381 0.00 0.00 33.87 3.86
2243 2271 0.377554 AGACGATACGACCTGCTTCG 59.622 55.000 0.00 2.03 44.87 3.79
2244 2272 0.591741 GACGATACGACCTGCTTCGG 60.592 60.000 7.66 0.00 43.58 4.30
2245 2273 1.028330 ACGATACGACCTGCTTCGGA 61.028 55.000 7.66 0.00 43.58 4.55
2246 2274 0.311165 CGATACGACCTGCTTCGGAT 59.689 55.000 0.92 0.92 45.56 4.18
2248 2276 1.693627 ATACGACCTGCTTCGGATCT 58.306 50.000 7.66 0.00 38.17 2.75
2249 2277 2.336945 TACGACCTGCTTCGGATCTA 57.663 50.000 7.66 0.00 43.58 1.98
2250 2278 1.025812 ACGACCTGCTTCGGATCTAG 58.974 55.000 7.66 0.00 43.58 2.43
2251 2279 0.312416 CGACCTGCTTCGGATCTAGG 59.688 60.000 0.00 0.00 35.26 3.02
2252 2280 0.676736 GACCTGCTTCGGATCTAGGG 59.323 60.000 0.00 0.00 32.81 3.53
2253 2281 1.369321 CCTGCTTCGGATCTAGGGC 59.631 63.158 0.00 0.00 0.00 5.19
2254 2282 1.369321 CTGCTTCGGATCTAGGGCC 59.631 63.158 0.00 0.00 0.00 5.80
2260 2288 3.686045 GGATCTAGGGCCGAGGCG 61.686 72.222 14.03 0.00 43.06 5.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 4.611807 CGCGTTGTGAGGCAGTTTTATTAA 60.612 41.667 0.00 0.00 36.48 1.40
36 37 3.120477 CGCGTTGTGAGGCAGTTTTATTA 60.120 43.478 0.00 0.00 36.48 0.98
114 115 4.732355 GCTGACAATTTTTGTACGGTGTGT 60.732 41.667 0.00 0.00 45.52 3.72
173 175 1.722011 CGAGGTAATTTCCGCACACT 58.278 50.000 5.74 0.00 0.00 3.55
188 190 1.165907 TTGTGTCCAGCTTTGCGAGG 61.166 55.000 0.00 0.00 0.00 4.63
244 246 1.603171 TCTTCGGCATTGCAAGGCA 60.603 52.632 33.92 14.95 37.46 4.75
357 359 2.644992 CAACAGTCCGGCCAAAGC 59.355 61.111 2.24 0.00 38.76 3.51
576 578 7.549488 CACGAGATCAAAAAGACTAAACCCTAT 59.451 37.037 0.00 0.00 0.00 2.57
799 801 3.117398 TCCACGGCCTCCTCTAAGTATTA 60.117 47.826 0.00 0.00 0.00 0.98
843 845 0.994050 GGCCTTCCCCTATCAACCCT 60.994 60.000 0.00 0.00 0.00 4.34
866 868 4.134623 GGGTTGAGCAACACGTCA 57.865 55.556 14.55 0.00 42.85 4.35
881 883 5.574891 TCACATTATTTCAACCATTCGGG 57.425 39.130 0.00 0.00 44.81 5.14
942 945 6.061441 TGAACACATTGACATGTAAAGAGGT 58.939 36.000 0.00 0.00 42.14 3.85
1013 1017 0.680921 CGGTGGCCTTGTCATGGAAT 60.681 55.000 3.32 0.00 0.00 3.01
1023 1027 1.599797 GTTAGCACACGGTGGCCTT 60.600 57.895 13.48 1.54 33.64 4.35
1063 1067 4.453480 TGTCCAAAGATTTGTTCTCCCT 57.547 40.909 4.71 0.00 36.45 4.20
1072 1076 4.803452 TCCTTCACCTTGTCCAAAGATTT 58.197 39.130 0.00 0.00 0.00 2.17
1073 1077 4.104738 TCTCCTTCACCTTGTCCAAAGATT 59.895 41.667 0.00 0.00 0.00 2.40
1122 1127 2.361757 CACCTTGCAAACATCTCCACAA 59.638 45.455 0.00 0.00 0.00 3.33
1222 1227 0.250124 TCGGCGTGAGTTGGAAATGT 60.250 50.000 6.85 0.00 0.00 2.71
1225 1230 0.034198 TCATCGGCGTGAGTTGGAAA 59.966 50.000 6.85 0.00 0.00 3.13
1253 1258 6.791867 ACATGTTACTTCTCTAGCATACCA 57.208 37.500 0.00 0.00 0.00 3.25
1286 1292 2.206750 GGAGTTAGTGTTGACGCACAA 58.793 47.619 0.00 0.00 41.52 3.33
1291 1297 5.418310 ACAAAATGGAGTTAGTGTTGACG 57.582 39.130 0.00 0.00 0.00 4.35
1348 1355 3.243873 TGGCACTTCATGATCTATCGACC 60.244 47.826 0.00 0.00 0.00 4.79
1351 1358 4.248691 TCTGGCACTTCATGATCTATCG 57.751 45.455 0.00 0.00 0.00 2.92
1383 1390 9.664332 CCTAAGATAATCTTCATATTGGTCCTG 57.336 37.037 0.00 0.00 37.89 3.86
1402 1409 3.031417 AACCGCTGGCGCCTAAGAT 62.031 57.895 29.70 7.70 38.24 2.40
1445 1452 1.066858 TGACGATGCTCTTCCTCCAAC 60.067 52.381 0.00 0.00 0.00 3.77
1470 1478 3.372206 CGTTTCTTTCGCTCCATCATCTT 59.628 43.478 0.00 0.00 0.00 2.40
1484 1492 0.966920 TCTCCTCCTCGCGTTTCTTT 59.033 50.000 5.77 0.00 0.00 2.52
1488 1496 2.352032 CCCTCTCCTCCTCGCGTTT 61.352 63.158 5.77 0.00 0.00 3.60
1577 1588 0.388520 TCTTGTCACGTGCCTCATCG 60.389 55.000 11.67 5.03 0.00 3.84
1657 1668 2.812836 ATGTGGCATGACTTCATCCA 57.187 45.000 0.00 6.39 33.61 3.41
1666 1677 9.080097 TCATGATAAATGATAAATGTGGCATGA 57.920 29.630 0.00 0.00 36.05 3.07
1708 1720 1.136529 CACGACACATGTCTTCTTGCG 60.137 52.381 10.18 0.00 42.66 4.85
1731 1743 5.299531 TCAATACAAATTCACCCACGACAAA 59.700 36.000 0.00 0.00 0.00 2.83
1760 1779 7.542890 TGCTGAAAAACTTTAGTTGTCATGAA 58.457 30.769 0.00 0.00 38.44 2.57
1767 1786 8.872845 ACAGAAATTGCTGAAAAACTTTAGTTG 58.127 29.630 20.85 0.00 37.55 3.16
1779 1798 6.146601 TGACAAATCACAGAAATTGCTGAA 57.853 33.333 20.85 8.00 39.20 3.02
1810 1829 7.823799 TCTCAGCACAACAGATTATAATCACAA 59.176 33.333 24.00 1.16 37.89 3.33
1822 1850 1.277273 CCCTCATCTCAGCACAACAGA 59.723 52.381 0.00 0.00 0.00 3.41
1854 1882 5.704053 GCTAGGGTTTAAAACAGAGCACTTA 59.296 40.000 18.70 0.00 34.19 2.24
1859 1887 4.459337 ACATGCTAGGGTTTAAAACAGAGC 59.541 41.667 17.41 17.41 34.44 4.09
1869 1897 3.450904 TCTCACCTACATGCTAGGGTTT 58.549 45.455 19.30 3.17 39.00 3.27
1877 1905 3.118629 TGTCAAGGATCTCACCTACATGC 60.119 47.826 0.00 0.00 39.62 4.06
1880 1908 3.511540 CACTGTCAAGGATCTCACCTACA 59.488 47.826 0.00 0.00 39.62 2.74
1881 1909 3.118956 CCACTGTCAAGGATCTCACCTAC 60.119 52.174 0.00 0.00 39.62 3.18
1882 1910 3.099905 CCACTGTCAAGGATCTCACCTA 58.900 50.000 0.00 0.00 39.62 3.08
1883 1911 1.905215 CCACTGTCAAGGATCTCACCT 59.095 52.381 0.00 0.00 42.69 4.00
1884 1912 1.677217 GCCACTGTCAAGGATCTCACC 60.677 57.143 0.00 0.00 0.00 4.02
1885 1913 1.277557 AGCCACTGTCAAGGATCTCAC 59.722 52.381 0.00 0.00 0.00 3.51
1886 1914 1.649321 AGCCACTGTCAAGGATCTCA 58.351 50.000 0.00 0.00 0.00 3.27
1887 1915 4.414337 AATAGCCACTGTCAAGGATCTC 57.586 45.455 0.00 0.00 0.00 2.75
1888 1916 5.426833 ACTTAATAGCCACTGTCAAGGATCT 59.573 40.000 0.00 0.00 0.00 2.75
1889 1917 5.525378 CACTTAATAGCCACTGTCAAGGATC 59.475 44.000 0.00 0.00 0.00 3.36
1890 1918 5.431765 CACTTAATAGCCACTGTCAAGGAT 58.568 41.667 0.00 0.00 0.00 3.24
1891 1919 4.323485 CCACTTAATAGCCACTGTCAAGGA 60.323 45.833 0.00 0.00 0.00 3.36
1892 1920 3.941483 CCACTTAATAGCCACTGTCAAGG 59.059 47.826 0.00 0.00 0.00 3.61
1893 1921 4.832248 TCCACTTAATAGCCACTGTCAAG 58.168 43.478 0.00 0.00 0.00 3.02
1894 1922 4.901197 TCCACTTAATAGCCACTGTCAA 57.099 40.909 0.00 0.00 0.00 3.18
1895 1923 4.384098 CCATCCACTTAATAGCCACTGTCA 60.384 45.833 0.00 0.00 0.00 3.58
1896 1924 4.130118 CCATCCACTTAATAGCCACTGTC 58.870 47.826 0.00 0.00 0.00 3.51
1897 1925 3.523564 ACCATCCACTTAATAGCCACTGT 59.476 43.478 0.00 0.00 0.00 3.55
1898 1926 3.879295 CACCATCCACTTAATAGCCACTG 59.121 47.826 0.00 0.00 0.00 3.66
1899 1927 3.117888 CCACCATCCACTTAATAGCCACT 60.118 47.826 0.00 0.00 0.00 4.00
1900 1928 3.214328 CCACCATCCACTTAATAGCCAC 58.786 50.000 0.00 0.00 0.00 5.01
1901 1929 2.849943 ACCACCATCCACTTAATAGCCA 59.150 45.455 0.00 0.00 0.00 4.75
1902 1930 3.577805 ACCACCATCCACTTAATAGCC 57.422 47.619 0.00 0.00 0.00 3.93
1903 1931 3.632145 CCAACCACCATCCACTTAATAGC 59.368 47.826 0.00 0.00 0.00 2.97
1904 1932 4.207165 CCCAACCACCATCCACTTAATAG 58.793 47.826 0.00 0.00 0.00 1.73
1905 1933 3.053245 CCCCAACCACCATCCACTTAATA 60.053 47.826 0.00 0.00 0.00 0.98
1906 1934 2.292192 CCCCAACCACCATCCACTTAAT 60.292 50.000 0.00 0.00 0.00 1.40
1907 1935 1.076350 CCCCAACCACCATCCACTTAA 59.924 52.381 0.00 0.00 0.00 1.85
1908 1936 0.701731 CCCCAACCACCATCCACTTA 59.298 55.000 0.00 0.00 0.00 2.24
1909 1937 1.464722 CCCCAACCACCATCCACTT 59.535 57.895 0.00 0.00 0.00 3.16
1910 1938 3.180282 CCCCAACCACCATCCACT 58.820 61.111 0.00 0.00 0.00 4.00
1911 1939 2.679996 GCCCCAACCACCATCCAC 60.680 66.667 0.00 0.00 0.00 4.02
1912 1940 1.217747 TATGCCCCAACCACCATCCA 61.218 55.000 0.00 0.00 0.00 3.41
1913 1941 0.188342 ATATGCCCCAACCACCATCC 59.812 55.000 0.00 0.00 0.00 3.51
1914 1942 2.969821 TATATGCCCCAACCACCATC 57.030 50.000 0.00 0.00 0.00 3.51
1915 1943 3.921287 ATTATATGCCCCAACCACCAT 57.079 42.857 0.00 0.00 0.00 3.55
1916 1944 3.571590 GAATTATATGCCCCAACCACCA 58.428 45.455 0.00 0.00 0.00 4.17
1917 1945 2.897326 GGAATTATATGCCCCAACCACC 59.103 50.000 0.00 0.00 0.00 4.61
1918 1946 2.897326 GGGAATTATATGCCCCAACCAC 59.103 50.000 0.00 0.00 38.69 4.16
1919 1947 3.252554 GGGAATTATATGCCCCAACCA 57.747 47.619 0.00 0.00 38.69 3.67
1925 1953 2.215942 AAGCGGGGAATTATATGCCC 57.784 50.000 0.00 0.00 46.91 5.36
1926 1954 3.153919 TGAAAGCGGGGAATTATATGCC 58.846 45.455 0.00 0.00 0.00 4.40
1927 1955 4.425577 CTGAAAGCGGGGAATTATATGC 57.574 45.455 0.00 0.00 0.00 3.14
1942 1970 1.607467 CTGGGTTGGGGGCTGAAAG 60.607 63.158 0.00 0.00 0.00 2.62
1943 1971 2.525592 CTGGGTTGGGGGCTGAAA 59.474 61.111 0.00 0.00 0.00 2.69
1944 1972 3.589542 CCTGGGTTGGGGGCTGAA 61.590 66.667 0.00 0.00 0.00 3.02
1957 1985 1.079127 CGAACTACACCCAGCCTGG 60.079 63.158 2.91 2.91 37.25 4.45
1958 1986 1.079127 CCGAACTACACCCAGCCTG 60.079 63.158 0.00 0.00 0.00 4.85
1959 1987 1.229082 TCCGAACTACACCCAGCCT 60.229 57.895 0.00 0.00 0.00 4.58
1960 1988 1.218316 CTCCGAACTACACCCAGCC 59.782 63.158 0.00 0.00 0.00 4.85
1961 1989 1.218316 CCTCCGAACTACACCCAGC 59.782 63.158 0.00 0.00 0.00 4.85
1962 1990 1.218316 GCCTCCGAACTACACCCAG 59.782 63.158 0.00 0.00 0.00 4.45
1963 1991 1.122632 TTGCCTCCGAACTACACCCA 61.123 55.000 0.00 0.00 0.00 4.51
1964 1992 0.035739 TTTGCCTCCGAACTACACCC 59.964 55.000 0.00 0.00 0.00 4.61
1965 1993 1.439679 CTTTGCCTCCGAACTACACC 58.560 55.000 0.00 0.00 0.00 4.16
1966 1994 0.796927 GCTTTGCCTCCGAACTACAC 59.203 55.000 0.00 0.00 0.00 2.90
1967 1995 0.685097 AGCTTTGCCTCCGAACTACA 59.315 50.000 0.00 0.00 0.00 2.74
1968 1996 1.732809 GAAGCTTTGCCTCCGAACTAC 59.267 52.381 0.00 0.00 0.00 2.73
1969 1997 1.338769 GGAAGCTTTGCCTCCGAACTA 60.339 52.381 0.00 0.00 29.04 2.24
1970 1998 0.606673 GGAAGCTTTGCCTCCGAACT 60.607 55.000 0.00 0.00 29.04 3.01
1971 1999 1.876664 GGAAGCTTTGCCTCCGAAC 59.123 57.895 0.00 0.00 29.04 3.95
1972 2000 4.397348 GGAAGCTTTGCCTCCGAA 57.603 55.556 0.00 0.00 29.04 4.30
1975 2003 0.678048 ATCACGGAAGCTTTGCCTCC 60.678 55.000 0.00 0.00 35.94 4.30
1976 2004 0.449388 CATCACGGAAGCTTTGCCTC 59.551 55.000 0.00 0.00 0.00 4.70
1977 2005 0.962356 CCATCACGGAAGCTTTGCCT 60.962 55.000 0.00 0.00 36.56 4.75
1978 2006 1.508088 CCATCACGGAAGCTTTGCC 59.492 57.895 0.00 0.00 36.56 4.52
1979 2007 1.153958 GCCATCACGGAAGCTTTGC 60.154 57.895 0.00 0.00 36.56 3.68
1980 2008 1.135315 CGCCATCACGGAAGCTTTG 59.865 57.895 0.00 0.00 36.56 2.77
1981 2009 1.003839 TCGCCATCACGGAAGCTTT 60.004 52.632 0.00 0.00 36.56 3.51
1982 2010 1.448540 CTCGCCATCACGGAAGCTT 60.449 57.895 0.00 0.00 36.56 3.74
1983 2011 2.185350 CTCGCCATCACGGAAGCT 59.815 61.111 0.00 0.00 36.56 3.74
1984 2012 1.880340 CTCTCGCCATCACGGAAGC 60.880 63.158 0.00 0.00 36.56 3.86
1985 2013 0.526524 GTCTCTCGCCATCACGGAAG 60.527 60.000 0.00 0.00 36.56 3.46
1986 2014 0.965866 AGTCTCTCGCCATCACGGAA 60.966 55.000 0.00 0.00 36.56 4.30
1987 2015 1.378646 AGTCTCTCGCCATCACGGA 60.379 57.895 0.00 0.00 36.56 4.69
1988 2016 1.226802 CAGTCTCTCGCCATCACGG 60.227 63.158 0.00 0.00 38.11 4.94
1989 2017 1.875813 GCAGTCTCTCGCCATCACG 60.876 63.158 0.00 0.00 0.00 4.35
1990 2018 0.179089 ATGCAGTCTCTCGCCATCAC 60.179 55.000 0.00 0.00 0.00 3.06
1991 2019 0.538584 AATGCAGTCTCTCGCCATCA 59.461 50.000 0.00 0.00 0.00 3.07
1992 2020 2.515926 TAATGCAGTCTCTCGCCATC 57.484 50.000 0.00 0.00 0.00 3.51
1993 2021 2.831333 CTTAATGCAGTCTCTCGCCAT 58.169 47.619 0.00 0.00 0.00 4.40
1994 2022 1.740380 GCTTAATGCAGTCTCTCGCCA 60.740 52.381 0.00 0.00 42.31 5.69
1995 2023 0.933796 GCTTAATGCAGTCTCTCGCC 59.066 55.000 0.00 0.00 42.31 5.54
1996 2024 0.933796 GGCTTAATGCAGTCTCTCGC 59.066 55.000 0.00 0.00 45.15 5.03
1997 2025 1.134699 TGGGCTTAATGCAGTCTCTCG 60.135 52.381 0.00 0.00 45.15 4.04
1998 2026 2.698855 TGGGCTTAATGCAGTCTCTC 57.301 50.000 0.00 0.00 45.15 3.20
1999 2027 3.285484 CATTGGGCTTAATGCAGTCTCT 58.715 45.455 0.00 0.00 45.15 3.10
2000 2028 3.019564 ACATTGGGCTTAATGCAGTCTC 58.980 45.455 12.65 0.00 45.15 3.36
2001 2029 3.091633 ACATTGGGCTTAATGCAGTCT 57.908 42.857 12.65 0.00 45.15 3.24
2002 2030 3.874392 AACATTGGGCTTAATGCAGTC 57.126 42.857 12.65 0.00 45.15 3.51
2003 2031 3.367292 CGAAACATTGGGCTTAATGCAGT 60.367 43.478 12.65 0.00 45.15 4.40
2004 2032 3.181397 CGAAACATTGGGCTTAATGCAG 58.819 45.455 12.65 0.00 45.15 4.41
2005 2033 2.560542 ACGAAACATTGGGCTTAATGCA 59.439 40.909 12.65 0.00 45.15 3.96
2006 2034 3.119495 AGACGAAACATTGGGCTTAATGC 60.119 43.478 12.65 0.00 40.80 3.56
2007 2035 4.701956 AGACGAAACATTGGGCTTAATG 57.298 40.909 11.59 11.59 42.38 1.90
2008 2036 6.177610 TCTTAGACGAAACATTGGGCTTAAT 58.822 36.000 0.00 0.00 0.00 1.40
2009 2037 5.553123 TCTTAGACGAAACATTGGGCTTAA 58.447 37.500 0.00 0.00 0.00 1.85
2010 2038 5.155278 TCTTAGACGAAACATTGGGCTTA 57.845 39.130 0.00 0.00 0.00 3.09
2011 2039 4.003648 CTCTTAGACGAAACATTGGGCTT 58.996 43.478 0.00 0.00 0.00 4.35
2012 2040 3.600388 CTCTTAGACGAAACATTGGGCT 58.400 45.455 0.00 0.00 0.00 5.19
2013 2041 2.096013 GCTCTTAGACGAAACATTGGGC 59.904 50.000 0.00 0.00 0.00 5.36
2014 2042 2.348666 CGCTCTTAGACGAAACATTGGG 59.651 50.000 0.00 0.00 0.00 4.12
2015 2043 3.250744 TCGCTCTTAGACGAAACATTGG 58.749 45.455 0.00 0.00 34.93 3.16
2016 2044 4.903638 TTCGCTCTTAGACGAAACATTG 57.096 40.909 13.90 0.00 44.57 2.82
2022 2050 2.596452 CAGCTTTCGCTCTTAGACGAA 58.404 47.619 12.82 12.82 45.15 3.85
2023 2051 1.135373 CCAGCTTTCGCTCTTAGACGA 60.135 52.381 0.00 3.57 45.15 4.20
2024 2052 1.272781 CCAGCTTTCGCTCTTAGACG 58.727 55.000 0.00 0.00 45.15 4.18
2025 2053 1.066787 ACCCAGCTTTCGCTCTTAGAC 60.067 52.381 0.00 0.00 45.15 2.59
2026 2054 1.267121 ACCCAGCTTTCGCTCTTAGA 58.733 50.000 0.00 0.00 45.15 2.10
2027 2055 2.482142 CCTACCCAGCTTTCGCTCTTAG 60.482 54.545 0.00 0.00 45.15 2.18
2028 2056 1.480954 CCTACCCAGCTTTCGCTCTTA 59.519 52.381 0.00 0.00 45.15 2.10
2029 2057 0.250513 CCTACCCAGCTTTCGCTCTT 59.749 55.000 0.00 0.00 45.15 2.85
2030 2058 0.614979 TCCTACCCAGCTTTCGCTCT 60.615 55.000 0.00 0.00 45.15 4.09
2031 2059 0.179097 CTCCTACCCAGCTTTCGCTC 60.179 60.000 0.00 0.00 45.15 5.03
2033 2061 0.036294 AACTCCTACCCAGCTTTCGC 60.036 55.000 0.00 0.00 0.00 4.70
2034 2062 2.076863 CAAACTCCTACCCAGCTTTCG 58.923 52.381 0.00 0.00 0.00 3.46
2035 2063 2.814336 CACAAACTCCTACCCAGCTTTC 59.186 50.000 0.00 0.00 0.00 2.62
2036 2064 2.489073 CCACAAACTCCTACCCAGCTTT 60.489 50.000 0.00 0.00 0.00 3.51
2037 2065 1.073923 CCACAAACTCCTACCCAGCTT 59.926 52.381 0.00 0.00 0.00 3.74
2038 2066 0.693049 CCACAAACTCCTACCCAGCT 59.307 55.000 0.00 0.00 0.00 4.24
2039 2067 0.690762 TCCACAAACTCCTACCCAGC 59.309 55.000 0.00 0.00 0.00 4.85
2040 2068 2.840651 AGATCCACAAACTCCTACCCAG 59.159 50.000 0.00 0.00 0.00 4.45
2041 2069 2.571653 CAGATCCACAAACTCCTACCCA 59.428 50.000 0.00 0.00 0.00 4.51
2042 2070 2.681097 GCAGATCCACAAACTCCTACCC 60.681 54.545 0.00 0.00 0.00 3.69
2043 2071 2.027192 TGCAGATCCACAAACTCCTACC 60.027 50.000 0.00 0.00 0.00 3.18
2044 2072 3.265791 CTGCAGATCCACAAACTCCTAC 58.734 50.000 8.42 0.00 0.00 3.18
2045 2073 2.237143 CCTGCAGATCCACAAACTCCTA 59.763 50.000 17.39 0.00 0.00 2.94
2046 2074 1.004044 CCTGCAGATCCACAAACTCCT 59.996 52.381 17.39 0.00 0.00 3.69
2047 2075 1.457346 CCTGCAGATCCACAAACTCC 58.543 55.000 17.39 0.00 0.00 3.85
2048 2076 1.457346 CCCTGCAGATCCACAAACTC 58.543 55.000 17.39 0.00 0.00 3.01
2049 2077 0.610232 GCCCTGCAGATCCACAAACT 60.610 55.000 17.39 0.00 0.00 2.66
2050 2078 0.610232 AGCCCTGCAGATCCACAAAC 60.610 55.000 17.39 0.00 0.00 2.93
2051 2079 0.609957 CAGCCCTGCAGATCCACAAA 60.610 55.000 17.39 0.00 0.00 2.83
2052 2080 1.001764 CAGCCCTGCAGATCCACAA 60.002 57.895 17.39 0.00 0.00 3.33
2053 2081 2.672908 CAGCCCTGCAGATCCACA 59.327 61.111 17.39 0.00 0.00 4.17
2054 2082 2.124403 CCAGCCCTGCAGATCCAC 60.124 66.667 17.39 0.00 0.00 4.02
2055 2083 3.414193 CCCAGCCCTGCAGATCCA 61.414 66.667 17.39 0.00 0.00 3.41
2056 2084 4.891037 GCCCAGCCCTGCAGATCC 62.891 72.222 17.39 2.46 0.00 3.36
2057 2085 3.771110 GAGCCCAGCCCTGCAGATC 62.771 68.421 17.39 6.15 0.00 2.75
2058 2086 3.806667 GAGCCCAGCCCTGCAGAT 61.807 66.667 17.39 0.00 0.00 2.90
2064 2092 3.696518 TATCACCGAGCCCAGCCCT 62.697 63.158 0.00 0.00 0.00 5.19
2065 2093 3.161450 TATCACCGAGCCCAGCCC 61.161 66.667 0.00 0.00 0.00 5.19
2066 2094 2.134287 TCTATCACCGAGCCCAGCC 61.134 63.158 0.00 0.00 0.00 4.85
2067 2095 1.068250 GTCTATCACCGAGCCCAGC 59.932 63.158 0.00 0.00 0.00 4.85
2068 2096 0.103208 GTGTCTATCACCGAGCCCAG 59.897 60.000 0.00 0.00 40.84 4.45
2069 2097 2.199117 GTGTCTATCACCGAGCCCA 58.801 57.895 0.00 0.00 40.84 5.36
2077 2105 2.032620 ACCCGATCAGGTGTCTATCAC 58.967 52.381 0.00 0.00 45.47 3.06
2078 2106 2.307768 GACCCGATCAGGTGTCTATCA 58.692 52.381 5.02 0.00 41.42 2.15
2079 2107 1.614413 GGACCCGATCAGGTGTCTATC 59.386 57.143 5.02 0.00 41.42 2.08
2080 2108 1.705873 GGACCCGATCAGGTGTCTAT 58.294 55.000 5.02 0.00 41.42 1.98
2081 2109 0.750546 CGGACCCGATCAGGTGTCTA 60.751 60.000 5.02 0.00 41.42 2.59
2082 2110 2.052690 CGGACCCGATCAGGTGTCT 61.053 63.158 5.02 0.00 41.42 3.41
2083 2111 2.050350 TCGGACCCGATCAGGTGTC 61.050 63.158 5.02 10.07 44.01 3.67
2084 2112 2.036731 TCGGACCCGATCAGGTGT 59.963 61.111 5.02 1.88 44.01 4.16
2093 2121 2.355126 CTGCATCGATCGGACCCG 60.355 66.667 16.41 1.31 41.35 5.28
2094 2122 1.300233 GTCTGCATCGATCGGACCC 60.300 63.158 16.41 2.28 34.58 4.46
2095 2123 4.327885 GTCTGCATCGATCGGACC 57.672 61.111 16.41 4.13 34.58 4.46
2096 2124 0.103208 AAGGTCTGCATCGATCGGAC 59.897 55.000 16.41 19.94 38.71 4.79
2097 2125 0.103026 CAAGGTCTGCATCGATCGGA 59.897 55.000 16.41 0.52 0.00 4.55
2098 2126 0.103026 TCAAGGTCTGCATCGATCGG 59.897 55.000 16.41 0.48 0.00 4.18
2099 2127 1.203928 GTCAAGGTCTGCATCGATCG 58.796 55.000 9.36 9.36 0.00 3.69
2100 2128 1.203928 CGTCAAGGTCTGCATCGATC 58.796 55.000 0.00 0.00 0.00 3.69
2101 2129 0.179100 CCGTCAAGGTCTGCATCGAT 60.179 55.000 0.00 0.00 34.51 3.59
2102 2130 1.215382 CCGTCAAGGTCTGCATCGA 59.785 57.895 0.00 0.00 34.51 3.59
2103 2131 3.786101 CCGTCAAGGTCTGCATCG 58.214 61.111 0.00 0.00 34.51 3.84
2113 2141 1.137513 GACAACTCCGAACCGTCAAG 58.862 55.000 0.00 0.00 0.00 3.02
2114 2142 0.595567 CGACAACTCCGAACCGTCAA 60.596 55.000 0.00 0.00 0.00 3.18
2115 2143 1.008194 CGACAACTCCGAACCGTCA 60.008 57.895 0.00 0.00 0.00 4.35
2116 2144 1.000736 GACGACAACTCCGAACCGTC 61.001 60.000 0.00 0.00 39.32 4.79
2117 2145 1.008079 GACGACAACTCCGAACCGT 60.008 57.895 0.00 0.00 0.00 4.83
2118 2146 1.731969 GGACGACAACTCCGAACCG 60.732 63.158 0.00 0.00 0.00 4.44
2119 2147 0.666577 CTGGACGACAACTCCGAACC 60.667 60.000 0.00 0.00 0.00 3.62
2120 2148 0.313043 TCTGGACGACAACTCCGAAC 59.687 55.000 0.00 0.00 0.00 3.95
2121 2149 0.596577 CTCTGGACGACAACTCCGAA 59.403 55.000 0.00 0.00 0.00 4.30
2122 2150 1.241990 CCTCTGGACGACAACTCCGA 61.242 60.000 0.00 0.00 0.00 4.55
2123 2151 1.213013 CCTCTGGACGACAACTCCG 59.787 63.158 0.00 0.00 0.00 4.63
2124 2152 1.079750 GCCTCTGGACGACAACTCC 60.080 63.158 0.00 0.00 0.00 3.85
2125 2153 1.444553 CGCCTCTGGACGACAACTC 60.445 63.158 0.00 0.00 0.00 3.01
2126 2154 1.867919 CTCGCCTCTGGACGACAACT 61.868 60.000 0.00 0.00 34.08 3.16
2127 2155 1.444553 CTCGCCTCTGGACGACAAC 60.445 63.158 0.00 0.00 34.08 3.32
2128 2156 1.863662 GACTCGCCTCTGGACGACAA 61.864 60.000 0.00 0.00 34.08 3.18
2129 2157 2.282251 ACTCGCCTCTGGACGACA 60.282 61.111 0.00 0.00 34.08 4.35
2130 2158 2.486042 GACTCGCCTCTGGACGAC 59.514 66.667 0.00 0.00 34.08 4.34
2131 2159 2.750637 GGACTCGCCTCTGGACGA 60.751 66.667 0.00 0.00 36.73 4.20
2132 2160 2.549611 CTTGGACTCGCCTCTGGACG 62.550 65.000 0.00 0.00 37.63 4.79
2133 2161 1.216710 CTTGGACTCGCCTCTGGAC 59.783 63.158 0.00 0.00 37.63 4.02
2134 2162 0.324738 ATCTTGGACTCGCCTCTGGA 60.325 55.000 0.00 0.00 37.63 3.86
2135 2163 0.539051 AATCTTGGACTCGCCTCTGG 59.461 55.000 0.00 0.00 37.63 3.86
2136 2164 1.649664 CAATCTTGGACTCGCCTCTG 58.350 55.000 0.00 0.00 37.63 3.35
2137 2165 0.107945 GCAATCTTGGACTCGCCTCT 60.108 55.000 0.00 0.00 37.63 3.69
2138 2166 0.391661 TGCAATCTTGGACTCGCCTC 60.392 55.000 0.00 0.00 37.63 4.70
2139 2167 0.254178 ATGCAATCTTGGACTCGCCT 59.746 50.000 0.00 0.00 37.63 5.52
2140 2168 0.659957 GATGCAATCTTGGACTCGCC 59.340 55.000 0.00 0.00 41.17 5.54
2151 2179 0.465705 TCGGAGACCCAGATGCAATC 59.534 55.000 0.00 0.00 46.04 2.67
2152 2180 1.071385 GATCGGAGACCCAGATGCAAT 59.929 52.381 0.00 0.00 42.51 3.56
2153 2181 0.465705 GATCGGAGACCCAGATGCAA 59.534 55.000 0.00 0.00 42.51 4.08
2154 2182 1.738346 CGATCGGAGACCCAGATGCA 61.738 60.000 7.38 0.00 42.51 3.96
2155 2183 1.006805 CGATCGGAGACCCAGATGC 60.007 63.158 7.38 0.00 42.51 3.91
2156 2184 1.032794 TTCGATCGGAGACCCAGATG 58.967 55.000 16.41 0.00 42.51 2.90
2157 2185 1.683917 CTTTCGATCGGAGACCCAGAT 59.316 52.381 16.41 0.00 42.51 2.90
2158 2186 1.103803 CTTTCGATCGGAGACCCAGA 58.896 55.000 16.41 0.00 42.51 3.86
2159 2187 0.818296 ACTTTCGATCGGAGACCCAG 59.182 55.000 16.41 2.58 42.51 4.45
2160 2188 1.203994 GAACTTTCGATCGGAGACCCA 59.796 52.381 16.41 0.00 42.51 4.51
2161 2189 1.471153 GGAACTTTCGATCGGAGACCC 60.471 57.143 16.41 14.53 42.51 4.46
2162 2190 1.203994 TGGAACTTTCGATCGGAGACC 59.796 52.381 16.41 19.04 42.51 3.85
2163 2191 2.649331 TGGAACTTTCGATCGGAGAC 57.351 50.000 16.41 12.21 42.51 3.36
2164 2192 2.758423 TCATGGAACTTTCGATCGGAGA 59.242 45.455 16.41 0.00 45.75 3.71
2165 2193 3.165058 TCATGGAACTTTCGATCGGAG 57.835 47.619 16.41 15.55 0.00 4.63
2166 2194 3.819564 ATCATGGAACTTTCGATCGGA 57.180 42.857 16.41 2.60 0.00 4.55
2167 2195 4.871513 TCTATCATGGAACTTTCGATCGG 58.128 43.478 16.41 1.30 0.00 4.18
2168 2196 6.828502 TTTCTATCATGGAACTTTCGATCG 57.171 37.500 9.36 9.36 0.00 3.69
2169 2197 8.425577 TCTTTTCTATCATGGAACTTTCGATC 57.574 34.615 0.00 0.00 0.00 3.69
2170 2198 8.043710 ACTCTTTTCTATCATGGAACTTTCGAT 58.956 33.333 0.00 0.00 0.00 3.59
2171 2199 7.386851 ACTCTTTTCTATCATGGAACTTTCGA 58.613 34.615 0.00 0.00 0.00 3.71
2172 2200 7.201565 GGACTCTTTTCTATCATGGAACTTTCG 60.202 40.741 0.00 0.00 0.00 3.46
2173 2201 7.201565 CGGACTCTTTTCTATCATGGAACTTTC 60.202 40.741 0.00 0.00 0.00 2.62
2174 2202 6.595716 CGGACTCTTTTCTATCATGGAACTTT 59.404 38.462 0.00 0.00 0.00 2.66
2175 2203 6.109359 CGGACTCTTTTCTATCATGGAACTT 58.891 40.000 0.00 0.00 0.00 2.66
2176 2204 5.395768 CCGGACTCTTTTCTATCATGGAACT 60.396 44.000 0.00 0.00 0.00 3.01
2177 2205 4.811557 CCGGACTCTTTTCTATCATGGAAC 59.188 45.833 0.00 0.00 0.00 3.62
2178 2206 4.683400 GCCGGACTCTTTTCTATCATGGAA 60.683 45.833 5.05 0.00 0.00 3.53
2179 2207 3.181465 GCCGGACTCTTTTCTATCATGGA 60.181 47.826 5.05 0.00 0.00 3.41
2180 2208 3.134458 GCCGGACTCTTTTCTATCATGG 58.866 50.000 5.05 0.00 0.00 3.66
2181 2209 2.797156 CGCCGGACTCTTTTCTATCATG 59.203 50.000 5.05 0.00 0.00 3.07
2182 2210 2.224066 CCGCCGGACTCTTTTCTATCAT 60.224 50.000 5.05 0.00 0.00 2.45
2183 2211 1.136305 CCGCCGGACTCTTTTCTATCA 59.864 52.381 5.05 0.00 0.00 2.15
2184 2212 1.538419 CCCGCCGGACTCTTTTCTATC 60.538 57.143 5.05 0.00 0.00 2.08
2185 2213 0.464452 CCCGCCGGACTCTTTTCTAT 59.536 55.000 5.05 0.00 0.00 1.98
2186 2214 1.610554 CCCCGCCGGACTCTTTTCTA 61.611 60.000 5.05 0.00 0.00 2.10
2187 2215 2.663196 CCCGCCGGACTCTTTTCT 59.337 61.111 5.05 0.00 0.00 2.52
2188 2216 2.436115 CCCCGCCGGACTCTTTTC 60.436 66.667 5.05 0.00 0.00 2.29
2189 2217 4.029809 CCCCCGCCGGACTCTTTT 62.030 66.667 5.05 0.00 0.00 2.27
2191 2219 4.798682 ATCCCCCGCCGGACTCTT 62.799 66.667 5.05 0.00 33.77 2.85
2194 2222 4.880426 ATCATCCCCCGCCGGACT 62.880 66.667 5.05 0.00 33.77 3.85
2195 2223 4.315941 GATCATCCCCCGCCGGAC 62.316 72.222 5.05 0.00 33.77 4.79
2198 2226 4.008933 GAGGATCATCCCCCGCCG 62.009 72.222 0.00 0.00 37.19 6.46
2199 2227 3.641454 GGAGGATCATCCCCCGCC 61.641 72.222 15.73 0.00 37.19 6.13
2205 2233 0.830648 TGAACACGGGAGGATCATCC 59.169 55.000 18.27 18.27 36.25 3.51
2206 2234 1.757118 TCTGAACACGGGAGGATCATC 59.243 52.381 0.00 0.00 36.25 2.92
2207 2235 1.482593 GTCTGAACACGGGAGGATCAT 59.517 52.381 0.00 0.00 36.25 2.45
2208 2236 0.895530 GTCTGAACACGGGAGGATCA 59.104 55.000 0.00 0.00 36.25 2.92
2209 2237 0.179134 CGTCTGAACACGGGAGGATC 60.179 60.000 0.00 0.00 36.07 3.36
2210 2238 0.611062 TCGTCTGAACACGGGAGGAT 60.611 55.000 0.00 0.00 40.35 3.24
2211 2239 0.611062 ATCGTCTGAACACGGGAGGA 60.611 55.000 0.00 0.00 40.35 3.71
2212 2240 1.100510 TATCGTCTGAACACGGGAGG 58.899 55.000 0.00 0.00 40.35 4.30
2213 2241 1.531264 CGTATCGTCTGAACACGGGAG 60.531 57.143 0.00 0.00 40.35 4.30
2214 2242 0.448990 CGTATCGTCTGAACACGGGA 59.551 55.000 0.00 0.00 40.35 5.14
2215 2243 0.448990 TCGTATCGTCTGAACACGGG 59.551 55.000 0.00 0.00 40.35 5.28
2216 2244 1.531912 GTCGTATCGTCTGAACACGG 58.468 55.000 0.00 0.00 40.35 4.94
2217 2245 1.129998 AGGTCGTATCGTCTGAACACG 59.870 52.381 0.00 0.00 41.36 4.49
2218 2246 2.516923 CAGGTCGTATCGTCTGAACAC 58.483 52.381 8.50 0.00 33.88 3.32
2219 2247 1.135489 GCAGGTCGTATCGTCTGAACA 60.135 52.381 14.61 0.00 33.88 3.18
2220 2248 1.132643 AGCAGGTCGTATCGTCTGAAC 59.867 52.381 14.61 0.00 33.88 3.18
2221 2249 1.460504 AGCAGGTCGTATCGTCTGAA 58.539 50.000 14.61 0.00 33.88 3.02
2222 2250 1.400846 GAAGCAGGTCGTATCGTCTGA 59.599 52.381 14.61 0.00 33.88 3.27
2223 2251 1.828832 GAAGCAGGTCGTATCGTCTG 58.171 55.000 0.00 9.34 34.59 3.51
2224 2252 0.377554 CGAAGCAGGTCGTATCGTCT 59.622 55.000 0.00 0.00 36.26 4.18
2225 2253 0.591741 CCGAAGCAGGTCGTATCGTC 60.592 60.000 4.16 0.00 39.43 4.20
2226 2254 1.028330 TCCGAAGCAGGTCGTATCGT 61.028 55.000 4.16 0.00 39.43 3.73
2227 2255 0.311165 ATCCGAAGCAGGTCGTATCG 59.689 55.000 4.16 0.00 39.43 2.92
2228 2256 1.609555 AGATCCGAAGCAGGTCGTATC 59.390 52.381 4.16 3.56 39.43 2.24
2229 2257 1.693627 AGATCCGAAGCAGGTCGTAT 58.306 50.000 4.16 0.00 39.43 3.06
2230 2258 2.219458 CTAGATCCGAAGCAGGTCGTA 58.781 52.381 4.16 0.00 39.43 3.43
2231 2259 1.025812 CTAGATCCGAAGCAGGTCGT 58.974 55.000 4.16 0.00 39.43 4.34
2232 2260 0.312416 CCTAGATCCGAAGCAGGTCG 59.688 60.000 0.00 0.00 40.77 4.79
2233 2261 0.676736 CCCTAGATCCGAAGCAGGTC 59.323 60.000 0.00 0.00 0.00 3.85
2234 2262 1.403687 GCCCTAGATCCGAAGCAGGT 61.404 60.000 0.00 0.00 0.00 4.00
2235 2263 1.369321 GCCCTAGATCCGAAGCAGG 59.631 63.158 0.00 0.00 0.00 4.85
2236 2264 1.369321 GGCCCTAGATCCGAAGCAG 59.631 63.158 0.00 0.00 0.00 4.24
2237 2265 3.550974 GGCCCTAGATCCGAAGCA 58.449 61.111 0.00 0.00 0.00 3.91
2242 2270 3.686045 GCCTCGGCCCTAGATCCG 61.686 72.222 14.11 14.11 46.52 4.18
2243 2271 3.686045 CGCCTCGGCCCTAGATCC 61.686 72.222 0.00 0.00 37.98 3.36
2244 2272 3.686045 CCGCCTCGGCCCTAGATC 61.686 72.222 0.00 0.00 41.17 2.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.