Multiple sequence alignment - TraesCS2B01G032100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G032100 chr2B 100.000 3678 0 0 1 3678 15120631 15116954 0.000000e+00 6793.0
1 TraesCS2B01G032100 chr2B 92.903 2804 166 15 823 3611 15382495 15379710 0.000000e+00 4045.0
2 TraesCS2B01G032100 chr2B 91.580 2886 203 22 823 3678 15638722 15635847 0.000000e+00 3947.0
3 TraesCS2B01G032100 chr2B 92.714 2539 143 17 824 3322 15883092 15880556 0.000000e+00 3626.0
4 TraesCS2B01G032100 chr2B 92.872 2329 137 12 823 3127 15818617 15816294 0.000000e+00 3354.0
5 TraesCS2B01G032100 chr2B 92.830 2329 138 12 823 3127 15917588 15915265 0.000000e+00 3349.0
6 TraesCS2B01G032100 chr2B 92.658 2329 142 12 823 3127 15695311 15692988 0.000000e+00 3326.0
7 TraesCS2B01G032100 chr2B 92.146 1426 86 10 1724 3127 15756769 15755348 0.000000e+00 1989.0
8 TraesCS2B01G032100 chr2B 91.844 564 42 3 3115 3677 15692700 15692140 0.000000e+00 784.0
9 TraesCS2B01G032100 chr2B 91.667 564 43 3 3115 3677 15914977 15914417 0.000000e+00 778.0
10 TraesCS2B01G032100 chr2B 91.489 564 44 3 3115 3677 15816006 15815446 0.000000e+00 773.0
11 TraesCS2B01G032100 chr2B 91.312 564 45 3 3115 3677 15755060 15754500 0.000000e+00 767.0
12 TraesCS2B01G032100 chr2B 87.854 601 62 10 167 762 15383176 15382582 0.000000e+00 695.0
13 TraesCS2B01G032100 chr2B 83.882 304 35 8 434 734 15695689 15695397 1.010000e-70 278.0
14 TraesCS2B01G032100 chr2B 83.882 304 36 7 434 734 15818996 15818703 1.010000e-70 278.0
15 TraesCS2B01G032100 chr2B 83.882 304 36 7 434 734 15917967 15917674 1.010000e-70 278.0
16 TraesCS2B01G032100 chr2B 96.581 117 3 1 3207 3322 15880336 15880220 3.750000e-45 193.0
17 TraesCS2B01G032100 chr2A 90.711 2896 218 23 823 3678 11045196 11042312 0.000000e+00 3810.0
18 TraesCS2B01G032100 chr2A 90.250 2882 240 16 823 3678 11309926 11307060 0.000000e+00 3727.0
19 TraesCS2B01G032100 chr2A 83.424 1846 247 30 945 2746 3864882 3863052 0.000000e+00 1659.0
20 TraesCS2B01G032100 chr2A 91.885 382 31 0 3297 3678 11237978 11237597 5.410000e-148 534.0
21 TraesCS2B01G032100 chr2A 84.270 534 69 10 203 733 11045836 11045315 1.180000e-139 507.0
22 TraesCS2B01G032100 chr2D 90.263 2886 209 21 823 3678 10800556 10797713 0.000000e+00 3707.0
23 TraesCS2B01G032100 chr2D 94.044 1830 89 8 823 2633 10511669 10509841 0.000000e+00 2758.0
24 TraesCS2B01G032100 chr2D 93.989 1830 90 7 823 2633 10293849 10295677 0.000000e+00 2752.0
25 TraesCS2B01G032100 chr2D 93.934 1830 91 8 823 2633 10494618 10492790 0.000000e+00 2747.0
26 TraesCS2B01G032100 chrUn 92.440 2275 135 14 824 3062 345912891 345910618 0.000000e+00 3214.0
27 TraesCS2B01G032100 chrUn 92.834 2163 127 8 824 2959 339546675 339548836 0.000000e+00 3110.0
28 TraesCS2B01G032100 chr4A 82.500 80 12 2 198 276 236163059 236162981 6.590000e-08 69.4
29 TraesCS2B01G032100 chr7D 90.196 51 5 0 77 127 5840330 5840380 2.370000e-07 67.6
30 TraesCS2B01G032100 chr3A 90.196 51 5 0 199 249 277519255 277519205 2.370000e-07 67.6
31 TraesCS2B01G032100 chr1B 93.023 43 3 0 96 138 7413469 7413511 3.070000e-06 63.9
32 TraesCS2B01G032100 chr3D 88.000 50 6 0 197 246 435442755 435442804 3.970000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G032100 chr2B 15116954 15120631 3677 True 6793.000000 6793 100.000000 1 3678 1 chr2B.!!$R1 3677
1 TraesCS2B01G032100 chr2B 15635847 15638722 2875 True 3947.000000 3947 91.580000 823 3678 1 chr2B.!!$R2 2855
2 TraesCS2B01G032100 chr2B 15379710 15383176 3466 True 2370.000000 4045 90.378500 167 3611 2 chr2B.!!$R3 3444
3 TraesCS2B01G032100 chr2B 15880220 15883092 2872 True 1909.500000 3626 94.647500 824 3322 2 chr2B.!!$R7 2498
4 TraesCS2B01G032100 chr2B 15815446 15818996 3550 True 1468.333333 3354 89.414333 434 3677 3 chr2B.!!$R6 3243
5 TraesCS2B01G032100 chr2B 15914417 15917967 3550 True 1468.333333 3349 89.459667 434 3677 3 chr2B.!!$R8 3243
6 TraesCS2B01G032100 chr2B 15692140 15695689 3549 True 1462.666667 3326 89.461333 434 3677 3 chr2B.!!$R4 3243
7 TraesCS2B01G032100 chr2B 15754500 15756769 2269 True 1378.000000 1989 91.729000 1724 3677 2 chr2B.!!$R5 1953
8 TraesCS2B01G032100 chr2A 11307060 11309926 2866 True 3727.000000 3727 90.250000 823 3678 1 chr2A.!!$R3 2855
9 TraesCS2B01G032100 chr2A 11042312 11045836 3524 True 2158.500000 3810 87.490500 203 3678 2 chr2A.!!$R4 3475
10 TraesCS2B01G032100 chr2A 3863052 3864882 1830 True 1659.000000 1659 83.424000 945 2746 1 chr2A.!!$R1 1801
11 TraesCS2B01G032100 chr2D 10797713 10800556 2843 True 3707.000000 3707 90.263000 823 3678 1 chr2D.!!$R3 2855
12 TraesCS2B01G032100 chr2D 10509841 10511669 1828 True 2758.000000 2758 94.044000 823 2633 1 chr2D.!!$R2 1810
13 TraesCS2B01G032100 chr2D 10293849 10295677 1828 False 2752.000000 2752 93.989000 823 2633 1 chr2D.!!$F1 1810
14 TraesCS2B01G032100 chr2D 10492790 10494618 1828 True 2747.000000 2747 93.934000 823 2633 1 chr2D.!!$R1 1810
15 TraesCS2B01G032100 chrUn 345910618 345912891 2273 True 3214.000000 3214 92.440000 824 3062 1 chrUn.!!$R1 2238
16 TraesCS2B01G032100 chrUn 339546675 339548836 2161 False 3110.000000 3110 92.834000 824 2959 1 chrUn.!!$F1 2135

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
69 70 0.105039 GGATCGCCGGAAGTGAGATT 59.895 55.0 5.05 0.00 38.70 2.40 F
806 812 0.107214 ATGTGGCCACGTGGGATAAG 60.107 55.0 34.58 9.82 40.01 1.73 F
1387 1515 0.391661 GTGGAAGAAGATGAGGCGCA 60.392 55.0 10.83 0.00 0.00 6.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1313 1441 0.179020 CCCGAAGCTGAATATGCCCA 60.179 55.000 0.00 0.00 0.00 5.36 R
1749 1880 1.134907 GTTTGCATGGCATCCTTGGAG 60.135 52.381 0.00 0.00 38.76 3.86 R
2959 3178 1.339610 GCTGGGCACACAATTGTACAA 59.660 47.619 11.53 11.41 33.30 2.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.634397 TGGTGACAGAGGATTTGGATC 57.366 47.619 0.00 0.00 35.01 3.36
22 23 2.239654 TGGTGACAGAGGATTTGGATCC 59.760 50.000 4.20 4.20 43.45 3.36
23 24 5.256529 TGGTGACAGAGGATTTGGATCCG 62.257 52.174 7.39 0.00 45.71 4.18
28 29 4.235731 GGATTTGGATCCGCCGTT 57.764 55.556 7.39 0.00 42.36 4.44
29 30 2.022520 GGATTTGGATCCGCCGTTC 58.977 57.895 7.39 0.00 42.36 3.95
30 31 1.641677 GATTTGGATCCGCCGTTCG 59.358 57.895 7.39 0.00 40.66 3.95
31 32 1.078708 ATTTGGATCCGCCGTTCGT 60.079 52.632 7.39 0.00 40.66 3.85
32 33 1.087771 ATTTGGATCCGCCGTTCGTC 61.088 55.000 7.39 0.00 40.66 4.20
33 34 2.162338 TTTGGATCCGCCGTTCGTCT 62.162 55.000 7.39 0.00 40.66 4.18
34 35 2.162338 TTGGATCCGCCGTTCGTCTT 62.162 55.000 7.39 0.00 40.66 3.01
35 36 2.165301 GGATCCGCCGTTCGTCTTG 61.165 63.158 0.00 0.00 36.19 3.02
36 37 2.799540 GATCCGCCGTTCGTCTTGC 61.800 63.158 0.00 0.00 36.19 4.01
41 42 2.809601 CCGTTCGTCTTGCCGGAG 60.810 66.667 5.05 0.00 43.01 4.63
42 43 2.257371 CGTTCGTCTTGCCGGAGA 59.743 61.111 5.05 0.00 0.00 3.71
43 44 1.372499 CGTTCGTCTTGCCGGAGAA 60.372 57.895 5.05 0.00 0.00 2.87
44 45 1.344942 CGTTCGTCTTGCCGGAGAAG 61.345 60.000 5.05 6.46 0.00 2.85
45 46 1.014564 GTTCGTCTTGCCGGAGAAGG 61.015 60.000 5.05 0.00 0.00 3.46
55 56 3.930012 GGAGAAGGCCGGGGATCG 61.930 72.222 2.18 0.00 38.88 3.69
56 57 4.610714 GAGAAGGCCGGGGATCGC 62.611 72.222 2.18 0.06 37.59 4.58
64 65 4.891727 CGGGGATCGCCGGAAGTG 62.892 72.222 36.33 13.23 33.83 3.16
65 66 3.467226 GGGGATCGCCGGAAGTGA 61.467 66.667 13.74 0.00 39.91 3.41
66 67 2.107141 GGGATCGCCGGAAGTGAG 59.893 66.667 5.05 0.00 38.70 3.51
67 68 2.423898 GGGATCGCCGGAAGTGAGA 61.424 63.158 5.05 0.00 38.70 3.27
68 69 1.742768 GGATCGCCGGAAGTGAGAT 59.257 57.895 5.05 0.00 38.70 2.75
69 70 0.105039 GGATCGCCGGAAGTGAGATT 59.895 55.000 5.05 0.00 38.70 2.40
70 71 1.473434 GGATCGCCGGAAGTGAGATTT 60.473 52.381 5.05 0.00 38.70 2.17
71 72 1.594862 GATCGCCGGAAGTGAGATTTG 59.405 52.381 5.05 0.00 38.70 2.32
72 73 0.391130 TCGCCGGAAGTGAGATTTGG 60.391 55.000 5.05 0.00 0.00 3.28
73 74 1.369091 CGCCGGAAGTGAGATTTGGG 61.369 60.000 5.05 0.00 0.00 4.12
74 75 1.657751 GCCGGAAGTGAGATTTGGGC 61.658 60.000 5.05 0.00 0.00 5.36
75 76 0.322456 CCGGAAGTGAGATTTGGGCA 60.322 55.000 0.00 0.00 0.00 5.36
76 77 1.089920 CGGAAGTGAGATTTGGGCAG 58.910 55.000 0.00 0.00 0.00 4.85
77 78 1.339055 CGGAAGTGAGATTTGGGCAGA 60.339 52.381 0.00 0.00 0.00 4.26
78 79 2.681976 CGGAAGTGAGATTTGGGCAGAT 60.682 50.000 0.00 0.00 0.00 2.90
79 80 2.686915 GGAAGTGAGATTTGGGCAGATG 59.313 50.000 0.00 0.00 0.00 2.90
80 81 2.431954 AGTGAGATTTGGGCAGATGG 57.568 50.000 0.00 0.00 0.00 3.51
81 82 1.064166 AGTGAGATTTGGGCAGATGGG 60.064 52.381 0.00 0.00 0.00 4.00
82 83 1.064463 GTGAGATTTGGGCAGATGGGA 60.064 52.381 0.00 0.00 0.00 4.37
83 84 1.213678 TGAGATTTGGGCAGATGGGAG 59.786 52.381 0.00 0.00 0.00 4.30
84 85 0.554792 AGATTTGGGCAGATGGGAGG 59.445 55.000 0.00 0.00 0.00 4.30
85 86 0.468771 GATTTGGGCAGATGGGAGGG 60.469 60.000 0.00 0.00 0.00 4.30
86 87 0.925720 ATTTGGGCAGATGGGAGGGA 60.926 55.000 0.00 0.00 0.00 4.20
87 88 1.145900 TTTGGGCAGATGGGAGGGAA 61.146 55.000 0.00 0.00 0.00 3.97
88 89 1.574526 TTGGGCAGATGGGAGGGAAG 61.575 60.000 0.00 0.00 0.00 3.46
89 90 2.003548 GGGCAGATGGGAGGGAAGT 61.004 63.158 0.00 0.00 0.00 3.01
90 91 1.225704 GGCAGATGGGAGGGAAGTG 59.774 63.158 0.00 0.00 0.00 3.16
91 92 1.452833 GCAGATGGGAGGGAAGTGC 60.453 63.158 0.00 0.00 0.00 4.40
92 93 1.993653 CAGATGGGAGGGAAGTGCA 59.006 57.895 0.00 0.00 0.00 4.57
93 94 0.107312 CAGATGGGAGGGAAGTGCAG 60.107 60.000 0.00 0.00 0.00 4.41
94 95 1.452833 GATGGGAGGGAAGTGCAGC 60.453 63.158 0.00 0.00 0.00 5.25
95 96 3.335356 ATGGGAGGGAAGTGCAGCG 62.335 63.158 0.00 0.00 0.00 5.18
96 97 4.785453 GGGAGGGAAGTGCAGCGG 62.785 72.222 0.00 0.00 0.00 5.52
98 99 4.400961 GAGGGAAGTGCAGCGGCT 62.401 66.667 10.92 0.00 41.91 5.52
99 100 3.003173 AGGGAAGTGCAGCGGCTA 61.003 61.111 10.92 0.00 41.91 3.93
100 101 2.512515 GGGAAGTGCAGCGGCTAG 60.513 66.667 10.92 0.00 41.91 3.42
101 102 2.512515 GGAAGTGCAGCGGCTAGG 60.513 66.667 10.92 0.00 41.91 3.02
102 103 2.512515 GAAGTGCAGCGGCTAGGG 60.513 66.667 10.92 0.00 41.91 3.53
103 104 3.316573 GAAGTGCAGCGGCTAGGGT 62.317 63.158 10.92 0.00 41.91 4.34
104 105 2.804828 GAAGTGCAGCGGCTAGGGTT 62.805 60.000 10.92 0.00 41.91 4.11
105 106 2.359975 GTGCAGCGGCTAGGGTTT 60.360 61.111 10.92 0.00 41.91 3.27
106 107 2.359850 TGCAGCGGCTAGGGTTTG 60.360 61.111 10.92 0.00 41.91 2.93
107 108 3.134127 GCAGCGGCTAGGGTTTGG 61.134 66.667 0.26 0.00 36.96 3.28
108 109 2.351276 CAGCGGCTAGGGTTTGGT 59.649 61.111 0.26 0.00 0.00 3.67
109 110 1.745489 CAGCGGCTAGGGTTTGGTC 60.745 63.158 0.26 0.00 0.00 4.02
110 111 2.437895 GCGGCTAGGGTTTGGTCC 60.438 66.667 0.00 0.00 0.00 4.46
111 112 2.125269 CGGCTAGGGTTTGGTCCG 60.125 66.667 0.00 0.00 0.00 4.79
112 113 2.271173 GGCTAGGGTTTGGTCCGG 59.729 66.667 0.00 0.00 0.00 5.14
113 114 2.437895 GCTAGGGTTTGGTCCGGC 60.438 66.667 0.00 0.00 0.00 6.13
114 115 3.074281 CTAGGGTTTGGTCCGGCA 58.926 61.111 0.00 0.00 0.00 5.69
115 116 1.377229 CTAGGGTTTGGTCCGGCAA 59.623 57.895 0.00 0.00 0.00 4.52
116 117 0.676782 CTAGGGTTTGGTCCGGCAAG 60.677 60.000 0.00 0.00 0.00 4.01
117 118 2.757980 TAGGGTTTGGTCCGGCAAGC 62.758 60.000 0.00 0.00 0.00 4.01
118 119 2.909965 GGTTTGGTCCGGCAAGCA 60.910 61.111 10.03 1.32 0.00 3.91
119 120 2.644992 GTTTGGTCCGGCAAGCAG 59.355 61.111 0.00 0.00 0.00 4.24
120 121 1.896660 GTTTGGTCCGGCAAGCAGA 60.897 57.895 0.00 0.00 0.00 4.26
121 122 1.074775 TTTGGTCCGGCAAGCAGAT 59.925 52.632 0.00 0.00 0.00 2.90
122 123 1.243342 TTTGGTCCGGCAAGCAGATG 61.243 55.000 0.00 0.00 0.00 2.90
123 124 2.123248 TTGGTCCGGCAAGCAGATGA 62.123 55.000 0.00 0.00 0.00 2.92
124 125 1.817099 GGTCCGGCAAGCAGATGAG 60.817 63.158 0.00 0.00 0.00 2.90
125 126 1.817099 GTCCGGCAAGCAGATGAGG 60.817 63.158 0.00 0.00 0.00 3.86
126 127 1.989508 TCCGGCAAGCAGATGAGGA 60.990 57.895 0.00 0.00 0.00 3.71
127 128 1.147824 CCGGCAAGCAGATGAGGAT 59.852 57.895 0.00 0.00 0.00 3.24
128 129 0.394192 CCGGCAAGCAGATGAGGATA 59.606 55.000 0.00 0.00 0.00 2.59
129 130 1.002888 CCGGCAAGCAGATGAGGATAT 59.997 52.381 0.00 0.00 0.00 1.63
130 131 2.234661 CCGGCAAGCAGATGAGGATATA 59.765 50.000 0.00 0.00 0.00 0.86
131 132 3.118482 CCGGCAAGCAGATGAGGATATAT 60.118 47.826 0.00 0.00 0.00 0.86
132 133 4.100035 CCGGCAAGCAGATGAGGATATATA 59.900 45.833 0.00 0.00 0.00 0.86
133 134 5.221601 CCGGCAAGCAGATGAGGATATATAT 60.222 44.000 0.00 0.00 0.00 0.86
134 135 6.015095 CCGGCAAGCAGATGAGGATATATATA 60.015 42.308 0.00 0.00 0.00 0.86
135 136 7.310299 CCGGCAAGCAGATGAGGATATATATAT 60.310 40.741 4.86 4.86 0.00 0.86
136 137 8.743714 CGGCAAGCAGATGAGGATATATATATA 58.256 37.037 5.19 4.92 0.00 0.86
220 221 3.398292 CCTCCCTATATCCGCCCTAGATA 59.602 52.174 0.00 0.00 0.00 1.98
234 235 4.687219 GCCCTAGATATGGGTTGGATATGC 60.687 50.000 0.00 0.00 46.22 3.14
268 269 3.436924 CGGTTGTTTAGGGCCGGC 61.437 66.667 21.18 21.18 40.45 6.13
299 300 3.951663 CCGACTGGGTATTTCTTTTCCT 58.048 45.455 0.00 0.00 0.00 3.36
300 301 3.689649 CCGACTGGGTATTTCTTTTCCTG 59.310 47.826 0.00 0.00 0.00 3.86
301 302 4.564821 CCGACTGGGTATTTCTTTTCCTGA 60.565 45.833 0.00 0.00 0.00 3.86
303 304 5.561679 GACTGGGTATTTCTTTTCCTGACT 58.438 41.667 0.00 0.00 0.00 3.41
305 306 4.662278 TGGGTATTTCTTTTCCTGACTGG 58.338 43.478 0.00 0.00 37.10 4.00
318 319 3.941657 GACTGGTCAGCGACTGGGC 62.942 68.421 8.26 1.72 32.47 5.36
319 320 4.767255 CTGGTCAGCGACTGGGCC 62.767 72.222 0.00 0.00 32.47 5.80
340 341 1.559368 TCCGTCCGGACATTTAAGGA 58.441 50.000 32.80 25.49 39.76 3.36
341 342 1.901159 TCCGTCCGGACATTTAAGGAA 59.099 47.619 32.80 12.33 39.76 3.36
420 422 5.726980 ATAGTTGGTTGTGTGCATCAATT 57.273 34.783 9.76 0.47 0.00 2.32
433 435 3.881089 TGCATCAATTGATACAGAGGCTG 59.119 43.478 20.32 7.95 38.48 4.85
443 445 6.061022 TGATACAGAGGCTGGAAAATTGTA 57.939 37.500 0.00 0.00 35.51 2.41
451 453 7.543520 CAGAGGCTGGAAAATTGTAAAATCTTC 59.456 37.037 0.00 0.00 0.00 2.87
499 501 6.374333 TGAGAAGGATTTCCATAAAACTTCCG 59.626 38.462 0.00 0.00 40.22 4.30
531 533 3.239861 CCAGAGTCTGGCAAAGTCC 57.760 57.895 26.03 0.00 45.13 3.85
542 544 1.740025 GGCAAAGTCCGAATGAAGGAG 59.260 52.381 0.00 0.00 38.65 3.69
578 580 2.371658 AGCTCAACAAAGGCCTTCTT 57.628 45.000 20.79 10.56 37.28 2.52
587 589 2.978156 AAGGCCTTCTTTGACCATGA 57.022 45.000 13.78 0.00 29.99 3.07
588 590 2.978156 AGGCCTTCTTTGACCATGAA 57.022 45.000 0.00 0.00 0.00 2.57
605 607 5.482878 ACCATGAAAATTGGAAGAGCTCATT 59.517 36.000 17.77 7.31 37.69 2.57
606 608 5.810587 CCATGAAAATTGGAAGAGCTCATTG 59.189 40.000 17.77 0.00 36.26 2.82
607 609 6.350696 CCATGAAAATTGGAAGAGCTCATTGA 60.351 38.462 17.77 0.00 36.26 2.57
651 654 4.081642 GTCTCTAACTGAGTGGCCAACATA 60.082 45.833 7.24 0.74 43.13 2.29
698 701 7.469537 TTTGTCTAACCAAAAGAAGGTGAAA 57.530 32.000 0.00 0.00 39.86 2.69
704 707 5.066913 ACCAAAAGAAGGTGAAATCTCCT 57.933 39.130 0.00 0.00 41.23 3.69
768 774 3.320626 CGAATACATGACGCATGATCCT 58.679 45.455 21.37 6.43 43.81 3.24
769 775 3.742882 CGAATACATGACGCATGATCCTT 59.257 43.478 21.37 11.21 43.81 3.36
770 776 4.376717 CGAATACATGACGCATGATCCTTG 60.377 45.833 21.37 0.00 43.81 3.61
771 777 2.408271 ACATGACGCATGATCCTTGT 57.592 45.000 21.37 0.00 43.81 3.16
772 778 2.715046 ACATGACGCATGATCCTTGTT 58.285 42.857 21.37 0.00 43.81 2.83
779 785 2.421073 CGCATGATCCTTGTTGACATGT 59.579 45.455 0.00 0.00 39.95 3.21
802 808 0.466543 GTATATGTGGCCACGTGGGA 59.533 55.000 35.93 20.02 40.01 4.37
806 812 0.107214 ATGTGGCCACGTGGGATAAG 60.107 55.000 34.58 9.82 40.01 1.73
837 954 8.505625 GGAGTCTCTAACTGTCCTATAAATACG 58.494 40.741 0.00 0.00 38.74 3.06
846 963 4.046462 GTCCTATAAATACGCGCAGAACA 58.954 43.478 5.73 0.00 0.00 3.18
1070 1198 2.037687 CCAGAAGCAATGGGGGCA 59.962 61.111 0.00 0.00 33.94 5.36
1173 1301 2.146724 CCGATGGGTCCATGGCCTA 61.147 63.158 20.31 16.55 36.70 3.93
1313 1441 2.852075 TCCCACCACCTTCGCCTT 60.852 61.111 0.00 0.00 0.00 4.35
1387 1515 0.391661 GTGGAAGAAGATGAGGCGCA 60.392 55.000 10.83 0.00 0.00 6.09
1459 1587 1.004044 TCCGGAAAGAGGAGTACGACT 59.996 52.381 0.00 0.00 33.19 4.18
1521 1652 3.320256 TGGCATGTCAAAGCAACATTGTA 59.680 39.130 0.00 0.00 35.19 2.41
1749 1880 1.753073 CTGGATGGCCATGAAAAGGTC 59.247 52.381 26.56 6.56 44.91 3.85
1829 1960 3.084039 TGCATGAAAGGTCATTCACTCC 58.916 45.455 0.00 0.00 42.03 3.85
1860 2006 1.589803 CCCGAGACTTTTTGGACGTT 58.410 50.000 0.00 0.00 0.00 3.99
1865 2011 1.947456 AGACTTTTTGGACGTTCTGGC 59.053 47.619 0.00 0.00 0.00 4.85
2771 2937 0.370273 CATGTTTCTGGCGCTACGTC 59.630 55.000 7.64 0.00 0.00 4.34
2787 2953 3.672767 ACGTCCGGTTCTCTTGTAATT 57.327 42.857 0.00 0.00 0.00 1.40
2826 2992 6.094742 TGTGTGTAGAAACAAAGAAGCAATCA 59.905 34.615 0.00 0.00 37.36 2.57
2899 3114 5.373812 ACCTCTGTAGTTTCCATTATGGG 57.626 43.478 11.76 0.00 38.32 4.00
2925 3140 5.920903 ACCATGCAAATAATCCTTGGAATG 58.079 37.500 4.27 0.00 0.00 2.67
2988 3212 1.675310 TGTGCCCAGCTTTGATCCG 60.675 57.895 0.00 0.00 0.00 4.18
3020 3244 8.308931 ACCATTATGTCATTCATGCATTAATCC 58.691 33.333 3.06 0.00 37.91 3.01
3031 3255 8.669946 TTCATGCATTAATCCGTTCTGTATTA 57.330 30.769 0.00 0.00 0.00 0.98
3204 3737 1.582610 GCCATCACCGAAAAGGCGAA 61.583 55.000 0.00 0.00 46.52 4.70
3259 3796 1.617533 GGCCCGGTTCATTTCCCTTTA 60.618 52.381 0.00 0.00 0.00 1.85
3301 3838 2.656002 ACTAGACTGCGGCAGATTCTA 58.344 47.619 34.70 27.14 35.18 2.10
3453 3991 5.363292 TGTATTGTCCGGCTAGTGGTTATTA 59.637 40.000 0.00 0.00 0.00 0.98
3462 4000 9.038072 TCCGGCTAGTGGTTATTATTGATAATA 57.962 33.333 0.00 0.44 34.91 0.98
3499 4037 5.708230 TCTTGTTGTTTGGTTTGTACTGTCT 59.292 36.000 0.00 0.00 0.00 3.41
3536 4078 4.039488 TGCTGCAGGTTCTTCATTTCAATT 59.961 37.500 17.12 0.00 0.00 2.32
3571 4113 4.556942 TCATCAGTGCAACAACAAAGAG 57.443 40.909 0.00 0.00 41.43 2.85
3582 4124 7.276438 GTGCAACAACAAAGAGAGAAAGAAAAT 59.724 33.333 0.00 0.00 36.32 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.239654 GGATCCAAATCCTCTGTCACCA 59.760 50.000 6.95 0.00 46.97 4.17
2 3 2.924421 GGATCCAAATCCTCTGTCACC 58.076 52.381 6.95 0.00 46.97 4.02
12 13 1.087771 ACGAACGGCGGATCCAAATC 61.088 55.000 13.24 1.44 46.49 2.17
13 14 1.078708 ACGAACGGCGGATCCAAAT 60.079 52.632 13.24 0.00 46.49 2.32
14 15 1.738830 GACGAACGGCGGATCCAAA 60.739 57.895 13.24 0.00 46.49 3.28
15 16 2.125832 GACGAACGGCGGATCCAA 60.126 61.111 13.24 0.00 46.49 3.53
16 17 2.642254 AAGACGAACGGCGGATCCA 61.642 57.895 13.24 0.00 46.49 3.41
17 18 2.165301 CAAGACGAACGGCGGATCC 61.165 63.158 13.24 0.00 46.49 3.36
18 19 2.799540 GCAAGACGAACGGCGGATC 61.800 63.158 13.24 8.46 46.49 3.36
19 20 2.813908 GCAAGACGAACGGCGGAT 60.814 61.111 13.24 0.00 46.49 4.18
25 26 1.344942 CTTCTCCGGCAAGACGAACG 61.345 60.000 0.00 0.00 35.47 3.95
26 27 1.014564 CCTTCTCCGGCAAGACGAAC 61.015 60.000 13.16 0.00 35.47 3.95
27 28 1.292223 CCTTCTCCGGCAAGACGAA 59.708 57.895 13.16 1.52 35.47 3.85
28 29 2.970639 CCTTCTCCGGCAAGACGA 59.029 61.111 13.16 0.00 35.47 4.20
38 39 3.930012 CGATCCCCGGCCTTCTCC 61.930 72.222 0.00 0.00 33.91 3.71
39 40 4.610714 GCGATCCCCGGCCTTCTC 62.611 72.222 0.00 0.00 39.04 2.87
48 49 3.447025 CTCACTTCCGGCGATCCCC 62.447 68.421 9.30 0.00 0.00 4.81
49 50 1.749334 ATCTCACTTCCGGCGATCCC 61.749 60.000 9.30 0.00 0.00 3.85
50 51 0.105039 AATCTCACTTCCGGCGATCC 59.895 55.000 9.30 0.00 0.00 3.36
51 52 1.594862 CAAATCTCACTTCCGGCGATC 59.405 52.381 9.30 0.00 0.00 3.69
52 53 1.656652 CAAATCTCACTTCCGGCGAT 58.343 50.000 9.30 0.00 0.00 4.58
53 54 0.391130 CCAAATCTCACTTCCGGCGA 60.391 55.000 9.30 0.00 0.00 5.54
54 55 1.369091 CCCAAATCTCACTTCCGGCG 61.369 60.000 0.00 0.00 0.00 6.46
55 56 1.657751 GCCCAAATCTCACTTCCGGC 61.658 60.000 0.00 0.00 0.00 6.13
56 57 0.322456 TGCCCAAATCTCACTTCCGG 60.322 55.000 0.00 0.00 0.00 5.14
57 58 1.089920 CTGCCCAAATCTCACTTCCG 58.910 55.000 0.00 0.00 0.00 4.30
58 59 2.496899 TCTGCCCAAATCTCACTTCC 57.503 50.000 0.00 0.00 0.00 3.46
59 60 2.686915 CCATCTGCCCAAATCTCACTTC 59.313 50.000 0.00 0.00 0.00 3.01
60 61 2.622452 CCCATCTGCCCAAATCTCACTT 60.622 50.000 0.00 0.00 0.00 3.16
61 62 1.064166 CCCATCTGCCCAAATCTCACT 60.064 52.381 0.00 0.00 0.00 3.41
62 63 1.064463 TCCCATCTGCCCAAATCTCAC 60.064 52.381 0.00 0.00 0.00 3.51
63 64 1.213678 CTCCCATCTGCCCAAATCTCA 59.786 52.381 0.00 0.00 0.00 3.27
64 65 1.478288 CCTCCCATCTGCCCAAATCTC 60.478 57.143 0.00 0.00 0.00 2.75
65 66 0.554792 CCTCCCATCTGCCCAAATCT 59.445 55.000 0.00 0.00 0.00 2.40
66 67 0.468771 CCCTCCCATCTGCCCAAATC 60.469 60.000 0.00 0.00 0.00 2.17
67 68 0.925720 TCCCTCCCATCTGCCCAAAT 60.926 55.000 0.00 0.00 0.00 2.32
68 69 1.145900 TTCCCTCCCATCTGCCCAAA 61.146 55.000 0.00 0.00 0.00 3.28
69 70 1.543642 TTCCCTCCCATCTGCCCAA 60.544 57.895 0.00 0.00 0.00 4.12
70 71 2.002977 CTTCCCTCCCATCTGCCCA 61.003 63.158 0.00 0.00 0.00 5.36
71 72 2.003548 ACTTCCCTCCCATCTGCCC 61.004 63.158 0.00 0.00 0.00 5.36
72 73 1.225704 CACTTCCCTCCCATCTGCC 59.774 63.158 0.00 0.00 0.00 4.85
73 74 1.452833 GCACTTCCCTCCCATCTGC 60.453 63.158 0.00 0.00 0.00 4.26
74 75 0.107312 CTGCACTTCCCTCCCATCTG 60.107 60.000 0.00 0.00 0.00 2.90
75 76 1.919600 GCTGCACTTCCCTCCCATCT 61.920 60.000 0.00 0.00 0.00 2.90
76 77 1.452833 GCTGCACTTCCCTCCCATC 60.453 63.158 0.00 0.00 0.00 3.51
77 78 2.679716 GCTGCACTTCCCTCCCAT 59.320 61.111 0.00 0.00 0.00 4.00
78 79 4.020617 CGCTGCACTTCCCTCCCA 62.021 66.667 0.00 0.00 0.00 4.37
79 80 4.785453 CCGCTGCACTTCCCTCCC 62.785 72.222 0.00 0.00 0.00 4.30
81 82 2.914777 CTAGCCGCTGCACTTCCCTC 62.915 65.000 2.16 0.00 41.13 4.30
82 83 3.003173 TAGCCGCTGCACTTCCCT 61.003 61.111 2.16 0.00 41.13 4.20
83 84 2.512515 CTAGCCGCTGCACTTCCC 60.513 66.667 2.16 0.00 41.13 3.97
84 85 2.512515 CCTAGCCGCTGCACTTCC 60.513 66.667 2.16 0.00 41.13 3.46
85 86 2.512515 CCCTAGCCGCTGCACTTC 60.513 66.667 2.16 0.00 41.13 3.01
86 87 2.411765 AAACCCTAGCCGCTGCACTT 62.412 55.000 2.16 0.00 41.13 3.16
87 88 2.895424 AAACCCTAGCCGCTGCACT 61.895 57.895 2.16 0.00 41.13 4.40
88 89 2.359975 AAACCCTAGCCGCTGCAC 60.360 61.111 2.16 0.00 41.13 4.57
89 90 2.359850 CAAACCCTAGCCGCTGCA 60.360 61.111 2.16 0.00 41.13 4.41
90 91 3.134127 CCAAACCCTAGCCGCTGC 61.134 66.667 2.16 0.00 37.95 5.25
91 92 1.745489 GACCAAACCCTAGCCGCTG 60.745 63.158 2.16 0.00 0.00 5.18
92 93 2.669240 GACCAAACCCTAGCCGCT 59.331 61.111 0.00 0.00 0.00 5.52
93 94 2.437895 GGACCAAACCCTAGCCGC 60.438 66.667 0.00 0.00 0.00 6.53
94 95 2.125269 CGGACCAAACCCTAGCCG 60.125 66.667 0.00 0.00 0.00 5.52
95 96 2.271173 CCGGACCAAACCCTAGCC 59.729 66.667 0.00 0.00 0.00 3.93
96 97 2.437895 GCCGGACCAAACCCTAGC 60.438 66.667 5.05 0.00 0.00 3.42
97 98 0.676782 CTTGCCGGACCAAACCCTAG 60.677 60.000 5.05 0.00 0.00 3.02
98 99 1.377229 CTTGCCGGACCAAACCCTA 59.623 57.895 5.05 0.00 0.00 3.53
99 100 2.115266 CTTGCCGGACCAAACCCT 59.885 61.111 5.05 0.00 0.00 4.34
100 101 3.680786 GCTTGCCGGACCAAACCC 61.681 66.667 5.05 0.00 0.00 4.11
101 102 2.909965 TGCTTGCCGGACCAAACC 60.910 61.111 5.05 0.00 0.00 3.27
102 103 1.244019 ATCTGCTTGCCGGACCAAAC 61.244 55.000 5.05 0.00 0.00 2.93
103 104 1.074775 ATCTGCTTGCCGGACCAAA 59.925 52.632 5.05 0.00 0.00 3.28
104 105 1.675310 CATCTGCTTGCCGGACCAA 60.675 57.895 5.05 0.00 0.00 3.67
105 106 2.046023 CATCTGCTTGCCGGACCA 60.046 61.111 5.05 0.00 0.00 4.02
106 107 1.817099 CTCATCTGCTTGCCGGACC 60.817 63.158 5.05 0.00 0.00 4.46
107 108 1.817099 CCTCATCTGCTTGCCGGAC 60.817 63.158 5.05 0.00 0.00 4.79
108 109 1.340399 ATCCTCATCTGCTTGCCGGA 61.340 55.000 5.05 0.00 0.00 5.14
109 110 0.394192 TATCCTCATCTGCTTGCCGG 59.606 55.000 0.00 0.00 0.00 6.13
110 111 2.469274 ATATCCTCATCTGCTTGCCG 57.531 50.000 0.00 0.00 0.00 5.69
162 163 7.514127 GCCCATCCCGATCCCATATATATATAT 59.486 40.741 9.12 9.12 0.00 0.86
163 164 6.844388 GCCCATCCCGATCCCATATATATATA 59.156 42.308 4.90 4.92 0.00 0.86
164 165 5.667626 GCCCATCCCGATCCCATATATATAT 59.332 44.000 0.00 0.00 0.00 0.86
165 166 5.030147 GCCCATCCCGATCCCATATATATA 58.970 45.833 0.00 0.00 0.00 0.86
172 173 0.911525 CTAGCCCATCCCGATCCCAT 60.912 60.000 0.00 0.00 0.00 4.00
179 180 4.609018 CCACGCTAGCCCATCCCG 62.609 72.222 9.66 0.00 0.00 5.14
220 221 1.360393 ACCCCGCATATCCAACCCAT 61.360 55.000 0.00 0.00 0.00 4.00
268 269 4.181010 CCAGTCGGGCCCCTCATG 62.181 72.222 18.66 10.14 0.00 3.07
299 300 2.574018 CCCAGTCGCTGACCAGTCA 61.574 63.158 8.20 0.00 38.06 3.41
300 301 2.262915 CCCAGTCGCTGACCAGTC 59.737 66.667 8.20 0.00 32.44 3.51
301 302 4.008933 GCCCAGTCGCTGACCAGT 62.009 66.667 8.20 0.00 32.44 4.00
305 306 2.512515 GATGGCCCAGTCGCTGAC 60.513 66.667 0.00 1.15 32.44 3.51
310 311 4.530857 GGACGGATGGCCCAGTCG 62.531 72.222 0.00 6.91 38.48 4.18
332 333 4.793201 GGCACCTCATACCTTCCTTAAAT 58.207 43.478 0.00 0.00 0.00 1.40
398 400 5.243507 TCAATTGATGCACACAACCAACTAT 59.756 36.000 3.38 0.00 0.00 2.12
420 422 4.922206 ACAATTTTCCAGCCTCTGTATCA 58.078 39.130 0.00 0.00 0.00 2.15
443 445 6.180472 AGTGTCACGGGAATATGAAGATTTT 58.820 36.000 0.00 0.00 0.00 1.82
451 453 6.705825 TCATTTCATAGTGTCACGGGAATATG 59.294 38.462 8.72 8.72 0.00 1.78
456 458 3.767131 TCTCATTTCATAGTGTCACGGGA 59.233 43.478 0.00 0.00 0.00 5.14
499 501 2.232696 GACTCTGGTGAGAAGGAACCTC 59.767 54.545 0.00 0.00 42.73 3.85
531 533 3.677002 GGAGCCTCTCCTTCATTCG 57.323 57.895 5.65 0.00 46.41 3.34
578 580 4.834496 AGCTCTTCCAATTTTCATGGTCAA 59.166 37.500 0.00 0.00 39.09 3.18
587 589 6.243900 TCTCTCAATGAGCTCTTCCAATTTT 58.756 36.000 16.19 0.00 42.38 1.82
588 590 5.813383 TCTCTCAATGAGCTCTTCCAATTT 58.187 37.500 16.19 0.00 42.38 1.82
605 607 5.047731 ACGTTCTTCACTTGATCATCTCTCA 60.048 40.000 0.00 0.00 0.00 3.27
606 608 5.406649 ACGTTCTTCACTTGATCATCTCTC 58.593 41.667 0.00 0.00 0.00 3.20
607 609 5.184864 AGACGTTCTTCACTTGATCATCTCT 59.815 40.000 0.00 0.00 0.00 3.10
698 701 4.202121 GCATGTTCAATGCATTCAGGAGAT 60.202 41.667 9.53 0.00 44.00 2.75
762 768 5.178096 ACCATACATGTCAACAAGGATCA 57.822 39.130 0.00 0.00 0.00 2.92
763 769 8.939929 CATATACCATACATGTCAACAAGGATC 58.060 37.037 0.00 0.00 0.00 3.36
764 770 8.439971 ACATATACCATACATGTCAACAAGGAT 58.560 33.333 0.00 0.00 0.00 3.24
765 771 7.714813 CACATATACCATACATGTCAACAAGGA 59.285 37.037 0.00 0.00 30.59 3.36
766 772 7.041167 CCACATATACCATACATGTCAACAAGG 60.041 40.741 0.00 0.00 30.59 3.61
768 774 6.262049 GCCACATATACCATACATGTCAACAA 59.738 38.462 0.00 0.00 30.59 2.83
769 775 5.762711 GCCACATATACCATACATGTCAACA 59.237 40.000 0.00 0.00 30.59 3.33
770 776 5.181245 GGCCACATATACCATACATGTCAAC 59.819 44.000 0.00 0.00 30.59 3.18
771 777 5.163152 TGGCCACATATACCATACATGTCAA 60.163 40.000 0.00 0.00 30.59 3.18
772 778 4.349342 TGGCCACATATACCATACATGTCA 59.651 41.667 0.00 0.00 30.59 3.58
779 785 2.037902 CCACGTGGCCACATATACCATA 59.962 50.000 34.16 0.00 35.53 2.74
802 808 6.381707 GGACAGTTAGAGACTCCTTTCCTTAT 59.618 42.308 0.00 0.00 36.10 1.73
806 812 4.090819 AGGACAGTTAGAGACTCCTTTCC 58.909 47.826 0.00 1.93 36.10 3.13
837 954 0.527385 TTTGCTGGTTTGTTCTGCGC 60.527 50.000 0.00 0.00 32.79 6.09
872 991 2.216898 AGACTTGTGCTTGAAGACAGC 58.783 47.619 0.00 0.00 0.00 4.40
1162 1290 1.139853 CTCCTTGAGTAGGCCATGGAC 59.860 57.143 18.40 14.73 44.37 4.02
1173 1301 3.643320 TGTCTGTGTTCATCTCCTTGAGT 59.357 43.478 0.00 0.00 0.00 3.41
1313 1441 0.179020 CCCGAAGCTGAATATGCCCA 60.179 55.000 0.00 0.00 0.00 5.36
1521 1652 1.070445 TGGGTTACATGACGGACGTTT 59.930 47.619 0.00 0.00 0.00 3.60
1563 1694 2.163818 TACCGAACACAAGCCTTCTG 57.836 50.000 0.00 0.00 0.00 3.02
1749 1880 1.134907 GTTTGCATGGCATCCTTGGAG 60.135 52.381 0.00 0.00 38.76 3.86
1829 1960 1.990060 TCTCGGGGCCCTTTCTCAG 60.990 63.158 24.38 8.69 0.00 3.35
1990 2142 4.024387 GCAACAGAAAAGGTCAATACACGA 60.024 41.667 0.00 0.00 0.00 4.35
2323 2483 3.060479 AGTATGTGGCTATCCTTGGGA 57.940 47.619 0.00 0.00 35.55 4.37
2771 2937 7.119262 AGTGTCATAAAATTACAAGAGAACCGG 59.881 37.037 0.00 0.00 0.00 5.28
2826 2992 6.759356 CACATTACATCATTGATGCAACCATT 59.241 34.615 23.43 7.55 43.15 3.16
2899 3114 4.892934 TCCAAGGATTATTTGCATGGTACC 59.107 41.667 4.43 4.43 0.00 3.34
2925 3140 8.608317 ACAACATAAACATAAAAGTTTTGTGCC 58.392 29.630 21.02 0.00 41.58 5.01
2959 3178 1.339610 GCTGGGCACACAATTGTACAA 59.660 47.619 11.53 11.41 33.30 2.41
2988 3212 6.262944 TGCATGAATGACATAATGGTAAGACC 59.737 38.462 0.00 0.00 37.46 3.85
3019 3243 5.237779 ACAACAAGTTGGTAATACAGAACGG 59.762 40.000 16.45 0.00 44.45 4.44
3020 3244 6.295039 ACAACAAGTTGGTAATACAGAACG 57.705 37.500 16.45 0.00 44.45 3.95
3031 3255 7.773690 ACTTAGTTCATAGAACAACAAGTTGGT 59.226 33.333 16.45 10.53 44.30 3.67
3087 3314 8.737168 TCTCAGAAGAAAAGATTTCTCACAAA 57.263 30.769 5.86 0.00 31.53 2.83
3152 3680 5.220854 CCGGCTCCTTAATCATTGTGTTAAG 60.221 44.000 12.94 12.94 37.55 1.85
3154 3682 4.196193 CCGGCTCCTTAATCATTGTGTTA 58.804 43.478 0.00 0.00 0.00 2.41
3155 3684 3.016736 CCGGCTCCTTAATCATTGTGTT 58.983 45.455 0.00 0.00 0.00 3.32
3210 3744 4.191544 CTGATTAGGATGAGCGTTTTCCA 58.808 43.478 5.27 0.00 31.65 3.53
3217 3751 1.342496 TGAGCCTGATTAGGATGAGCG 59.658 52.381 7.93 0.00 44.35 5.03
3259 3796 9.586435 CTAGTTCTTCAGAATTTTGGTTGTTTT 57.414 29.630 0.00 0.00 36.33 2.43
3301 3838 9.131791 ACAACCTGTTTCACTTGATTATTAAGT 57.868 29.630 0.00 0.00 38.84 2.24
3438 3976 9.871238 AGTATTATCAATAATAACCACTAGCCG 57.129 33.333 4.45 0.00 37.07 5.52
3465 4003 5.258051 ACCAAACAACAAGAACTTACTGGA 58.742 37.500 0.00 0.00 0.00 3.86
3467 4005 6.866248 ACAAACCAAACAACAAGAACTTACTG 59.134 34.615 0.00 0.00 0.00 2.74
3499 4037 4.247258 CCTGCAGCAATAAATGAAAAGCA 58.753 39.130 8.66 0.00 0.00 3.91
3536 4078 7.451501 TGCACTGATGAAATGAAGTGAAATA 57.548 32.000 5.87 0.00 39.02 1.40
3582 4124 6.832520 TGCCTGTCTAATTCAGCAATAAAA 57.167 33.333 0.00 0.00 0.00 1.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.