Multiple sequence alignment - TraesCS2B01G031800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G031800 chr2B 100.000 4869 0 0 1 4869 14837565 14832697 0.000000e+00 8992.0
1 TraesCS2B01G031800 chr2B 94.118 170 10 0 4687 4856 14817302 14817471 4.830000e-65 259.0
2 TraesCS2B01G031800 chr2B 90.299 134 12 1 612 744 483662112 483661979 1.800000e-39 174.0
3 TraesCS2B01G031800 chr2B 88.000 150 15 3 600 746 744555968 744556117 1.800000e-39 174.0
4 TraesCS2B01G031800 chr2D 91.099 3550 222 52 1159 4655 10725237 10721729 0.000000e+00 4719.0
5 TraesCS2B01G031800 chr2D 92.754 621 39 6 4 620 529696836 529696218 0.000000e+00 893.0
6 TraesCS2B01G031800 chr2D 95.029 342 14 2 763 1104 10725571 10725233 7.170000e-148 534.0
7 TraesCS2B01G031800 chr2D 86.780 295 31 7 1458 1749 591992998 591992709 6.080000e-84 322.0
8 TraesCS2B01G031800 chr2D 100.000 29 0 0 4317 4345 22419440 22419412 2.000000e-03 54.7
9 TraesCS2B01G031800 chr2D 100.000 29 0 0 4317 4345 409603259 409603287 2.000000e-03 54.7
10 TraesCS2B01G031800 chr2A 90.180 2393 142 53 799 3145 10996106 10993761 0.000000e+00 3031.0
11 TraesCS2B01G031800 chr2A 90.578 1592 83 22 3108 4693 10993755 10992225 0.000000e+00 2047.0
12 TraesCS2B01G031800 chr2A 100.000 29 0 0 4317 4345 81788837 81788809 2.000000e-03 54.7
13 TraesCS2B01G031800 chr4D 93.750 624 33 6 1 620 358452577 358451956 0.000000e+00 931.0
14 TraesCS2B01G031800 chr4D 92.949 624 38 6 1 620 42239202 42239823 0.000000e+00 904.0
15 TraesCS2B01G031800 chr4D 94.253 87 5 0 3157 3243 497058796 497058710 3.060000e-27 134.0
16 TraesCS2B01G031800 chr4D 93.023 86 6 0 3157 3242 467755794 467755879 5.120000e-25 126.0
17 TraesCS2B01G031800 chr4D 92.045 88 4 2 3156 3241 388122898 388122812 2.380000e-23 121.0
18 TraesCS2B01G031800 chr4D 90.909 88 7 1 3157 3244 504090794 504090708 3.080000e-22 117.0
19 TraesCS2B01G031800 chr4D 88.372 86 10 0 3157 3242 497058712 497058797 2.400000e-18 104.0
20 TraesCS2B01G031800 chr4D 87.912 91 4 2 3152 3242 9323769 9323852 3.100000e-17 100.0
21 TraesCS2B01G031800 chr3D 93.440 625 34 6 1 620 388439626 388440248 0.000000e+00 920.0
22 TraesCS2B01G031800 chr3D 92.800 625 36 9 1 620 579083161 579082541 0.000000e+00 896.0
23 TraesCS2B01G031800 chr3D 87.119 295 31 6 1458 1749 589252843 589253133 1.310000e-85 327.0
24 TraesCS2B01G031800 chr3D 86.102 295 34 6 1458 1749 158941897 158942187 1.320000e-80 311.0
25 TraesCS2B01G031800 chr3D 96.512 86 3 0 3157 3242 602205248 602205163 5.080000e-30 143.0
26 TraesCS2B01G031800 chr3D 91.209 91 8 0 3152 3242 437189898 437189808 1.840000e-24 124.0
27 TraesCS2B01G031800 chrUn 93.248 622 35 6 4 620 417327649 417327030 0.000000e+00 909.0
28 TraesCS2B01G031800 chrUn 86.513 304 27 9 1458 1749 354743476 354743777 6.080000e-84 322.0
29 TraesCS2B01G031800 chrUn 86.441 295 33 6 1458 1749 331842611 331842901 2.830000e-82 316.0
30 TraesCS2B01G031800 chrUn 86.982 169 19 3 583 748 221207405 221207573 2.310000e-43 187.0
31 TraesCS2B01G031800 chrUn 91.304 138 11 1 612 748 232062622 232062485 2.310000e-43 187.0
32 TraesCS2B01G031800 chrUn 84.211 95 11 4 3157 3249 381200684 381200592 6.710000e-14 89.8
33 TraesCS2B01G031800 chrUn 83.516 91 13 2 3156 3244 71203256 71203166 3.120000e-12 84.2
34 TraesCS2B01G031800 chrUn 83.516 91 13 2 3156 3244 326194390 326194300 3.120000e-12 84.2
35 TraesCS2B01G031800 chrUn 94.872 39 2 0 3156 3194 17059786 17059824 1.460000e-05 62.1
36 TraesCS2B01G031800 chrUn 100.000 30 0 0 3157 3186 347112612 347112641 6.810000e-04 56.5
37 TraesCS2B01G031800 chrUn 100.000 30 0 0 3157 3186 352128660 352128631 6.810000e-04 56.5
38 TraesCS2B01G031800 chr6D 92.949 624 37 7 1 620 469359995 469360615 0.000000e+00 902.0
39 TraesCS2B01G031800 chr6D 94.186 86 5 0 3156 3241 325727796 325727711 1.100000e-26 132.0
40 TraesCS2B01G031800 chr6D 92.308 91 7 0 3152 3242 110874375 110874285 3.960000e-26 130.0
41 TraesCS2B01G031800 chr6D 93.103 87 6 0 3156 3242 39676500 39676414 1.420000e-25 128.0
42 TraesCS2B01G031800 chr6D 86.022 93 11 2 3157 3249 39676415 39676505 1.120000e-16 99.0
43 TraesCS2B01G031800 chr7D 92.800 625 38 7 1 620 387492944 387492322 0.000000e+00 898.0
44 TraesCS2B01G031800 chr7D 86.513 304 27 9 1458 1749 231582512 231582813 6.080000e-84 322.0
45 TraesCS2B01G031800 chr7D 95.349 86 4 0 3156 3241 463263158 463263073 2.360000e-28 137.0
46 TraesCS2B01G031800 chr7D 84.127 63 8 1 4317 4377 478909813 478909875 5.260000e-05 60.2
47 TraesCS2B01G031800 chr7D 100.000 30 0 0 4317 4346 478909846 478909817 6.810000e-04 56.5
48 TraesCS2B01G031800 chr3B 92.777 623 39 5 1 620 42119529 42120148 0.000000e+00 896.0
49 TraesCS2B01G031800 chr3B 94.886 176 9 0 4694 4869 648731251 648731076 4.800000e-70 276.0
50 TraesCS2B01G031800 chr3B 94.798 173 9 0 4694 4866 648716452 648716624 2.230000e-68 270.0
51 TraesCS2B01G031800 chr3B 90.551 127 12 0 612 738 767686133 767686007 8.380000e-38 169.0
52 TraesCS2B01G031800 chr7B 86.139 303 29 9 1458 1749 90403627 90403927 1.020000e-81 315.0
53 TraesCS2B01G031800 chr7B 93.220 177 12 0 4693 4869 202134178 202134002 1.340000e-65 261.0
54 TraesCS2B01G031800 chr7B 86.709 158 19 1 583 738 624165562 624165405 1.800000e-39 174.0
55 TraesCS2B01G031800 chr4A 85.473 296 36 7 1457 1749 310776525 310776816 7.920000e-78 302.0
56 TraesCS2B01G031800 chr4A 87.574 169 18 3 583 748 741264388 741264220 4.970000e-45 193.0
57 TraesCS2B01G031800 chr5B 94.828 174 9 0 4693 4866 125248309 125248482 6.210000e-69 272.0
58 TraesCS2B01G031800 chr5B 93.642 173 11 0 4694 4866 125254597 125254425 4.830000e-65 259.0
59 TraesCS2B01G031800 chr4B 86.228 167 21 1 583 747 609362701 609362867 3.870000e-41 180.0
60 TraesCS2B01G031800 chr4B 89.583 48 2 2 4317 4361 286071807 286071854 1.890000e-04 58.4
61 TraesCS2B01G031800 chr1B 84.524 168 22 4 583 746 635928820 635928987 3.900000e-36 163.0
62 TraesCS2B01G031800 chr5D 95.455 88 3 1 3157 3244 122198514 122198428 6.570000e-29 139.0
63 TraesCS2B01G031800 chr5D 94.186 86 4 1 3157 3241 498655369 498655284 3.960000e-26 130.0
64 TraesCS2B01G031800 chr5D 82.540 63 9 1 4317 4377 278311371 278311309 2.000000e-03 54.7
65 TraesCS2B01G031800 chr7A 95.294 85 4 0 3157 3241 40538159 40538243 8.500000e-28 135.0
66 TraesCS2B01G031800 chr7A 86.792 53 4 3 4314 4363 697119246 697119298 6.810000e-04 56.5
67 TraesCS2B01G031800 chr6A 94.186 86 5 0 3156 3241 464514514 464514429 1.100000e-26 132.0
68 TraesCS2B01G031800 chr6A 100.000 28 0 0 4317 4344 559170099 559170126 9.000000e-03 52.8
69 TraesCS2B01G031800 chr1D 94.118 85 4 1 3157 3241 78965826 78965909 1.420000e-25 128.0
70 TraesCS2B01G031800 chr1D 90.698 43 3 1 4307 4348 426755782 426755824 6.810000e-04 56.5
71 TraesCS2B01G031800 chr5A 89.216 102 7 4 3147 3246 437210181 437210280 1.840000e-24 124.0
72 TraesCS2B01G031800 chr1A 90.698 86 6 2 3157 3241 96488592 96488508 3.980000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G031800 chr2B 14832697 14837565 4868 True 8992.0 8992 100.000 1 4869 1 chr2B.!!$R1 4868
1 TraesCS2B01G031800 chr2D 10721729 10725571 3842 True 2626.5 4719 93.064 763 4655 2 chr2D.!!$R4 3892
2 TraesCS2B01G031800 chr2D 529696218 529696836 618 True 893.0 893 92.754 4 620 1 chr2D.!!$R2 616
3 TraesCS2B01G031800 chr2A 10992225 10996106 3881 True 2539.0 3031 90.379 799 4693 2 chr2A.!!$R2 3894
4 TraesCS2B01G031800 chr4D 358451956 358452577 621 True 931.0 931 93.750 1 620 1 chr4D.!!$R1 619
5 TraesCS2B01G031800 chr4D 42239202 42239823 621 False 904.0 904 92.949 1 620 1 chr4D.!!$F2 619
6 TraesCS2B01G031800 chr3D 388439626 388440248 622 False 920.0 920 93.440 1 620 1 chr3D.!!$F2 619
7 TraesCS2B01G031800 chr3D 579082541 579083161 620 True 896.0 896 92.800 1 620 1 chr3D.!!$R2 619
8 TraesCS2B01G031800 chrUn 417327030 417327649 619 True 909.0 909 93.248 4 620 1 chrUn.!!$R6 616
9 TraesCS2B01G031800 chr6D 469359995 469360615 620 False 902.0 902 92.949 1 620 1 chr6D.!!$F2 619
10 TraesCS2B01G031800 chr7D 387492322 387492944 622 True 898.0 898 92.800 1 620 1 chr7D.!!$R1 619
11 TraesCS2B01G031800 chr3B 42119529 42120148 619 False 896.0 896 92.777 1 620 1 chr3B.!!$F1 619

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
662 671 0.174389 GAAGCTCTGATCTGACGGCA 59.826 55.000 13.80 0.0 0.00 5.69 F
743 752 0.251165 GCCTAGTGGTGCCCAAAGAA 60.251 55.000 0.00 0.0 34.18 2.52 F
1787 1837 0.393077 ACCCGTCCACTCTTGTTCAG 59.607 55.000 0.00 0.0 0.00 3.02 F
2518 2576 1.599542 GAGCTGCTTCACTTGAAACGT 59.400 47.619 2.53 0.0 33.07 3.99 F
2901 2959 0.517316 GGAGTGCTGTTTTAGTGCCG 59.483 55.000 0.00 0.0 0.00 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2089 2141 0.896019 TTACAATGGGGGTGGCAACG 60.896 55.000 0.00 0.0 42.51 4.10 R
2607 2665 1.065126 ACCCCTGCTGCTCTGAATAAC 60.065 52.381 0.00 0.0 0.00 1.89 R
2857 2915 0.106619 GTACAACCCACCCCACACAA 60.107 55.000 0.00 0.0 0.00 3.33 R
3602 3712 0.179045 ATCTTCCGGGATTTCCTGCG 60.179 55.000 0.00 0.0 41.13 5.18 R
4801 4947 0.104487 TTTTGACGCCAGTGACCGTA 59.896 50.000 8.45 0.0 37.87 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
136 138 3.805971 GCTACTACCGTCTGTGTGTTTTT 59.194 43.478 0.00 0.00 0.00 1.94
153 155 6.158598 GTGTTTTTGCTACATCCATTCATGT 58.841 36.000 0.00 0.00 40.28 3.21
221 226 1.932511 ACGGCATTTTTGTTGCAACAG 59.067 42.857 29.50 19.61 41.95 3.16
321 329 2.086054 TTTTTGCTGCAACCGTTGTT 57.914 40.000 15.72 0.00 34.14 2.83
346 354 2.149803 TTGCTACGACTGACACGGGG 62.150 60.000 0.00 0.00 34.93 5.73
348 356 1.505353 CTACGACTGACACGGGGAC 59.495 63.158 0.00 0.00 34.93 4.46
632 641 4.532314 GGAGACGAGGAGAAGGTTAAAA 57.468 45.455 0.00 0.00 0.00 1.52
633 642 4.891260 GGAGACGAGGAGAAGGTTAAAAA 58.109 43.478 0.00 0.00 0.00 1.94
660 669 2.023673 AGAGAAGCTCTGATCTGACGG 58.976 52.381 0.00 0.00 39.62 4.79
661 670 0.459489 AGAAGCTCTGATCTGACGGC 59.541 55.000 0.00 2.23 0.00 5.68
662 671 0.174389 GAAGCTCTGATCTGACGGCA 59.826 55.000 13.80 0.00 0.00 5.69
663 672 0.829333 AAGCTCTGATCTGACGGCAT 59.171 50.000 13.80 2.31 0.00 4.40
664 673 0.388659 AGCTCTGATCTGACGGCATC 59.611 55.000 13.80 0.00 0.00 3.91
665 674 0.938637 GCTCTGATCTGACGGCATCG 60.939 60.000 0.00 0.00 43.02 3.84
666 675 0.938637 CTCTGATCTGACGGCATCGC 60.939 60.000 0.00 0.00 40.63 4.58
667 676 1.227060 CTGATCTGACGGCATCGCA 60.227 57.895 0.00 0.00 40.63 5.10
668 677 1.485838 CTGATCTGACGGCATCGCAC 61.486 60.000 0.00 0.00 40.63 5.34
669 678 1.519234 GATCTGACGGCATCGCACA 60.519 57.895 0.00 0.00 40.63 4.57
670 679 1.485838 GATCTGACGGCATCGCACAG 61.486 60.000 0.00 0.00 41.63 3.66
671 680 3.857854 CTGACGGCATCGCACAGC 61.858 66.667 0.00 0.00 40.63 4.40
672 681 4.678499 TGACGGCATCGCACAGCA 62.678 61.111 0.00 0.00 40.63 4.41
673 682 3.857854 GACGGCATCGCACAGCAG 61.858 66.667 0.00 0.00 40.63 4.24
674 683 4.377708 ACGGCATCGCACAGCAGA 62.378 61.111 0.00 0.00 40.63 4.26
675 684 2.893895 CGGCATCGCACAGCAGAT 60.894 61.111 0.00 0.00 0.00 2.90
676 685 2.879070 CGGCATCGCACAGCAGATC 61.879 63.158 0.00 0.00 0.00 2.75
677 686 2.624811 GCATCGCACAGCAGATCG 59.375 61.111 0.00 0.00 0.00 3.69
678 687 2.879070 GCATCGCACAGCAGATCGG 61.879 63.158 0.00 0.00 0.00 4.18
679 688 1.227060 CATCGCACAGCAGATCGGA 60.227 57.895 0.00 0.00 0.00 4.55
680 689 1.227089 ATCGCACAGCAGATCGGAC 60.227 57.895 0.00 0.00 0.00 4.79
681 690 2.943680 ATCGCACAGCAGATCGGACG 62.944 60.000 0.00 0.00 0.00 4.79
682 691 2.887568 GCACAGCAGATCGGACGG 60.888 66.667 0.00 0.00 0.00 4.79
683 692 2.887568 CACAGCAGATCGGACGGC 60.888 66.667 0.00 0.00 0.00 5.68
684 693 3.071206 ACAGCAGATCGGACGGCT 61.071 61.111 0.00 2.42 41.42 5.52
686 695 3.842923 AGCAGATCGGACGGCTGG 61.843 66.667 0.00 0.00 39.52 4.85
687 696 4.899239 GCAGATCGGACGGCTGGG 62.899 72.222 0.00 0.00 0.00 4.45
688 697 3.147595 CAGATCGGACGGCTGGGA 61.148 66.667 0.00 0.00 0.00 4.37
689 698 2.835431 AGATCGGACGGCTGGGAG 60.835 66.667 0.00 0.00 0.00 4.30
690 699 4.593864 GATCGGACGGCTGGGAGC 62.594 72.222 0.00 0.00 41.46 4.70
694 703 4.459089 GGACGGCTGGGAGCAGAC 62.459 72.222 2.62 0.00 44.75 3.51
695 704 4.459089 GACGGCTGGGAGCAGACC 62.459 72.222 2.62 0.00 44.75 3.85
703 712 4.388499 GGAGCAGACCGGCCGAAA 62.388 66.667 30.73 0.00 0.00 3.46
704 713 3.119096 GAGCAGACCGGCCGAAAC 61.119 66.667 30.73 17.17 0.00 2.78
705 714 3.876589 GAGCAGACCGGCCGAAACA 62.877 63.158 30.73 0.00 0.00 2.83
706 715 2.746277 GCAGACCGGCCGAAACAT 60.746 61.111 30.73 6.07 0.00 2.71
707 716 2.332654 GCAGACCGGCCGAAACATT 61.333 57.895 30.73 2.44 0.00 2.71
708 717 1.794222 CAGACCGGCCGAAACATTC 59.206 57.895 30.73 12.41 0.00 2.67
717 726 2.178273 GAAACATTCGGCCGGTGC 59.822 61.111 27.83 7.79 0.00 5.01
718 727 3.661025 GAAACATTCGGCCGGTGCG 62.661 63.158 27.83 14.10 38.85 5.34
740 749 2.033448 CGCCTAGTGGTGCCCAAA 59.967 61.111 0.00 0.00 37.01 3.28
741 750 2.040544 CGCCTAGTGGTGCCCAAAG 61.041 63.158 0.00 0.00 37.01 2.77
742 751 1.378762 GCCTAGTGGTGCCCAAAGA 59.621 57.895 0.00 0.00 34.18 2.52
743 752 0.251165 GCCTAGTGGTGCCCAAAGAA 60.251 55.000 0.00 0.00 34.18 2.52
744 753 1.821666 GCCTAGTGGTGCCCAAAGAAA 60.822 52.381 0.00 0.00 34.18 2.52
745 754 2.593026 CCTAGTGGTGCCCAAAGAAAA 58.407 47.619 0.00 0.00 34.18 2.29
746 755 2.962421 CCTAGTGGTGCCCAAAGAAAAA 59.038 45.455 0.00 0.00 34.18 1.94
862 871 3.117888 GCATTATCTCCTCCCTCCAACAA 60.118 47.826 0.00 0.00 0.00 2.83
863 872 4.628715 GCATTATCTCCTCCCTCCAACAAA 60.629 45.833 0.00 0.00 0.00 2.83
864 873 5.509498 CATTATCTCCTCCCTCCAACAAAA 58.491 41.667 0.00 0.00 0.00 2.44
1079 1109 4.660938 GCTCCCCCAACAACCGCT 62.661 66.667 0.00 0.00 0.00 5.52
1080 1110 2.672996 CTCCCCCAACAACCGCTG 60.673 66.667 0.00 0.00 0.00 5.18
1081 1111 4.278513 TCCCCCAACAACCGCTGG 62.279 66.667 0.00 0.00 0.00 4.85
1112 1142 4.410400 CCGCGCCCCTCTCCTTTT 62.410 66.667 0.00 0.00 0.00 2.27
1113 1143 2.820037 CGCGCCCCTCTCCTTTTC 60.820 66.667 0.00 0.00 0.00 2.29
1116 1146 0.609406 GCGCCCCTCTCCTTTTCTTT 60.609 55.000 0.00 0.00 0.00 2.52
1120 1150 3.230976 GCCCCTCTCCTTTTCTTTTTCA 58.769 45.455 0.00 0.00 0.00 2.69
1127 1157 6.029346 TCTCCTTTTCTTTTTCATGGATGC 57.971 37.500 0.00 0.00 0.00 3.91
1133 1163 7.095355 CCTTTTCTTTTTCATGGATGCTTTCTG 60.095 37.037 0.00 0.00 0.00 3.02
1140 1170 9.558396 TTTTTCATGGATGCTTTCTGTTTTAAT 57.442 25.926 0.00 0.00 0.00 1.40
1143 1173 6.436847 TCATGGATGCTTTCTGTTTTAATGGA 59.563 34.615 0.00 0.00 0.00 3.41
1144 1174 6.855763 TGGATGCTTTCTGTTTTAATGGAT 57.144 33.333 0.00 0.00 0.00 3.41
1145 1175 7.243604 TGGATGCTTTCTGTTTTAATGGATT 57.756 32.000 0.00 0.00 0.00 3.01
1148 1178 7.276438 GGATGCTTTCTGTTTTAATGGATTGTC 59.724 37.037 0.00 0.00 0.00 3.18
1149 1179 7.288810 TGCTTTCTGTTTTAATGGATTGTCT 57.711 32.000 0.00 0.00 0.00 3.41
1150 1180 7.725251 TGCTTTCTGTTTTAATGGATTGTCTT 58.275 30.769 0.00 0.00 0.00 3.01
1151 1181 7.652909 TGCTTTCTGTTTTAATGGATTGTCTTG 59.347 33.333 0.00 0.00 0.00 3.02
1152 1182 7.116805 GCTTTCTGTTTTAATGGATTGTCTTGG 59.883 37.037 0.00 0.00 0.00 3.61
1153 1183 7.831691 TTCTGTTTTAATGGATTGTCTTGGA 57.168 32.000 0.00 0.00 0.00 3.53
1154 1184 8.421249 TTCTGTTTTAATGGATTGTCTTGGAT 57.579 30.769 0.00 0.00 0.00 3.41
1155 1185 7.829725 TCTGTTTTAATGGATTGTCTTGGATG 58.170 34.615 0.00 0.00 0.00 3.51
1156 1186 6.934056 TGTTTTAATGGATTGTCTTGGATGG 58.066 36.000 0.00 0.00 0.00 3.51
1157 1187 5.596836 TTTAATGGATTGTCTTGGATGGC 57.403 39.130 0.00 0.00 0.00 4.40
1161 1191 2.051804 GATTGTCTTGGATGGCGCCG 62.052 60.000 23.90 6.13 0.00 6.46
1186 1216 1.207089 CCTCACACTTGGCCGATAAGA 59.793 52.381 8.24 0.00 0.00 2.10
1188 1218 3.069586 CCTCACACTTGGCCGATAAGATA 59.930 47.826 8.24 0.00 0.00 1.98
1191 1221 3.809832 CACACTTGGCCGATAAGATAAGG 59.190 47.826 8.24 0.00 0.00 2.69
1203 1236 7.068470 GCCGATAAGATAAGGCTAGTAATAGGT 59.932 40.741 0.00 0.00 45.67 3.08
1217 1250 9.649167 GCTAGTAATAGGTTTTCTGTTGTAGAA 57.351 33.333 0.00 0.00 43.53 2.10
1235 1268 6.711277 TGTAGAACAGCAGGTGAATAGATTT 58.289 36.000 6.61 0.00 0.00 2.17
1324 1357 3.641437 TTTCGGCATCACTTTTCTTGG 57.359 42.857 0.00 0.00 0.00 3.61
1356 1389 4.217118 GCGAGATTTGGCCATAATTCATCT 59.783 41.667 6.09 7.01 0.00 2.90
1360 1393 8.517878 CGAGATTTGGCCATAATTCATCTATTT 58.482 33.333 6.09 0.00 0.00 1.40
1361 1394 9.852091 GAGATTTGGCCATAATTCATCTATTTC 57.148 33.333 6.09 0.00 0.00 2.17
1362 1395 9.370930 AGATTTGGCCATAATTCATCTATTTCA 57.629 29.630 6.09 0.00 0.00 2.69
1397 1430 2.212652 TGCTGTTGCTGTACTGTCAAG 58.787 47.619 8.91 2.58 40.48 3.02
1598 1636 5.638234 ACGTACTCTATTTTCTCTTTGCCAC 59.362 40.000 0.00 0.00 0.00 5.01
1635 1673 1.135972 CGATGTTTGCCCAAGTCTTCG 60.136 52.381 0.00 8.10 0.00 3.79
1750 1790 7.469537 TTCAACAGAACCCTTGTTTTCTTTA 57.530 32.000 0.00 0.00 33.97 1.85
1751 1791 7.469537 TCAACAGAACCCTTGTTTTCTTTAA 57.530 32.000 0.00 0.00 33.97 1.52
1752 1792 8.073467 TCAACAGAACCCTTGTTTTCTTTAAT 57.927 30.769 0.00 0.00 33.97 1.40
1753 1793 9.191479 TCAACAGAACCCTTGTTTTCTTTAATA 57.809 29.630 0.00 0.00 33.97 0.98
1787 1837 0.393077 ACCCGTCCACTCTTGTTCAG 59.607 55.000 0.00 0.00 0.00 3.02
1826 1876 3.152341 ACAGTGGCTTTCATCCTTTCAG 58.848 45.455 0.00 0.00 0.00 3.02
1833 1883 5.126067 GGCTTTCATCCTTTCAGCTGTATA 58.874 41.667 14.67 0.00 0.00 1.47
1860 1910 8.036575 GTGTTGAAACCCCTTTAGTTTTTAGTT 58.963 33.333 0.00 0.00 37.55 2.24
2444 2502 6.878923 CACCTACTGATGGAAACTGAACAATA 59.121 38.462 0.00 0.00 0.00 1.90
2518 2576 1.599542 GAGCTGCTTCACTTGAAACGT 59.400 47.619 2.53 0.00 33.07 3.99
2533 2591 6.713450 ACTTGAAACGTCCAATACTTAACCAT 59.287 34.615 4.17 0.00 0.00 3.55
2601 2659 3.703556 TCTTCACAAGGCAAAACCATGAA 59.296 39.130 0.00 0.00 39.64 2.57
2607 2665 1.688197 AGGCAAAACCATGAACCACAG 59.312 47.619 0.00 0.00 43.14 3.66
2623 2681 2.676839 CCACAGTTATTCAGAGCAGCAG 59.323 50.000 0.00 0.00 0.00 4.24
2664 2722 9.798994 TCTAGCTTAACTGTTTTATAGCTACAC 57.201 33.333 15.82 0.00 39.48 2.90
2682 2740 8.574196 AGCTACACATATGTTTTTGTTTTCAC 57.426 30.769 5.37 0.00 40.48 3.18
2687 2745 9.171877 ACACATATGTTTTTGTTTTCACCAATT 57.828 25.926 5.37 0.00 34.46 2.32
2718 2776 7.224753 ACTGTACTTGTCAAGTTATGTCAACTG 59.775 37.037 22.81 17.17 42.81 3.16
2789 2847 5.047235 AGACTCGAAATGCCTTTACTGTAGT 60.047 40.000 0.00 0.00 0.00 2.73
2791 2849 4.250464 TCGAAATGCCTTTACTGTAGTGG 58.750 43.478 0.00 4.47 0.00 4.00
2806 2864 2.613026 AGTGGTGTTGTCGTGAATGA 57.387 45.000 0.00 0.00 0.00 2.57
2807 2865 2.210116 AGTGGTGTTGTCGTGAATGAC 58.790 47.619 0.00 0.00 39.37 3.06
2826 2884 3.631686 TGACACATTTCCTGTCCTGTTTG 59.368 43.478 0.00 0.00 37.79 2.93
2901 2959 0.517316 GGAGTGCTGTTTTAGTGCCG 59.483 55.000 0.00 0.00 0.00 5.69
2984 3049 7.531857 TCTGCACATTTAAATTTCAGGGTTA 57.468 32.000 15.47 1.49 0.00 2.85
2987 3052 7.675062 TGCACATTTAAATTTCAGGGTTACAT 58.325 30.769 0.00 0.00 0.00 2.29
3068 3133 3.692791 AGCTTGACTTTTCGTGAAACC 57.307 42.857 0.00 0.00 0.00 3.27
3110 3175 7.451731 TGAGGAGGATTATCTTGTGGTTTAT 57.548 36.000 0.00 0.00 0.00 1.40
3184 3293 5.221263 CCCTCCGTCCCATAATATAAGATCG 60.221 48.000 0.00 0.00 0.00 3.69
3223 3332 9.716507 TTTTAGCTTGCAAAACGATCTTATATC 57.283 29.630 0.00 0.00 0.00 1.63
3280 3389 7.914465 TGGATTTTGCTTTATTGTTGTGAAAC 58.086 30.769 0.00 0.00 37.35 2.78
3314 3423 6.839124 AACAATCAGTTGCCATCTTATTCA 57.161 33.333 0.00 0.00 39.49 2.57
3392 3501 7.551035 AAAGTGATGCATAAGATCTGAGAAC 57.449 36.000 0.00 0.00 0.00 3.01
3429 3538 7.677454 TGAGCTAACATAATATGAGGCAATG 57.323 36.000 7.33 0.00 0.00 2.82
3518 3627 5.184892 ACTAATTTCAAGTCATCTGCCCT 57.815 39.130 0.00 0.00 0.00 5.19
3549 3658 2.229062 TGGAATTTTCGGCGCATTTACA 59.771 40.909 10.83 0.91 0.00 2.41
3602 3712 4.954092 ATTCTCGCATCCTTTTTCACTC 57.046 40.909 0.00 0.00 0.00 3.51
3637 3747 1.866015 AGATGTCACCTCCATTCCGA 58.134 50.000 0.00 0.00 0.00 4.55
3814 3924 4.687215 GAGGAGCACTGCACGGCA 62.687 66.667 3.30 0.00 36.92 5.69
3948 4059 1.730064 GCGCTCGTTGTTAAAGATGGA 59.270 47.619 0.00 0.00 0.00 3.41
3977 4088 4.065321 ACCTCCATGCTTCTAAATCGAG 57.935 45.455 0.00 0.00 0.00 4.04
3982 4093 0.810031 TGCTTCTAAATCGAGGCCGC 60.810 55.000 0.00 0.00 35.38 6.53
4012 4125 5.337330 CCGATATATCAGTTTGGGGGTCTAC 60.337 48.000 13.11 0.00 0.00 2.59
4013 4126 5.337330 CGATATATCAGTTTGGGGGTCTACC 60.337 48.000 13.11 0.00 39.11 3.18
4014 4127 0.909623 ATCAGTTTGGGGGTCTACCG 59.090 55.000 0.00 0.00 41.60 4.02
4015 4128 0.472352 TCAGTTTGGGGGTCTACCGT 60.472 55.000 0.00 0.00 41.60 4.83
4016 4129 0.036671 CAGTTTGGGGGTCTACCGTC 60.037 60.000 0.00 0.00 41.60 4.79
4017 4130 0.178912 AGTTTGGGGGTCTACCGTCT 60.179 55.000 0.00 0.00 41.60 4.18
4018 4131 1.077663 AGTTTGGGGGTCTACCGTCTA 59.922 52.381 0.00 0.00 41.60 2.59
4021 4134 1.825622 GGGGGTCTACCGTCTACCG 60.826 68.421 0.00 0.00 41.60 4.02
4026 4139 1.332997 GGTCTACCGTCTACCGACATG 59.667 57.143 0.00 0.00 40.23 3.21
4028 4141 0.030369 CTACCGTCTACCGACATGGC 59.970 60.000 0.00 0.00 43.94 4.40
4151 4264 9.616156 ACTAATATAGACCGATACCTAGATGTG 57.384 37.037 0.00 0.00 0.00 3.21
4338 4459 9.896645 AAGTTTTGCTAATTCTCATCTAGATGA 57.103 29.630 29.17 29.17 44.83 2.92
4412 4544 2.163412 TCGTGCTTTTTCTTTGTGCTGT 59.837 40.909 0.00 0.00 0.00 4.40
4450 4595 1.000052 TGTTCCGTTGTGCTCGTATCA 60.000 47.619 0.00 0.00 0.00 2.15
4488 4633 1.966563 CGTTGCCACGTTTGTATTTCG 59.033 47.619 1.47 0.00 41.84 3.46
4507 4652 0.941542 GTTTTAGCTGACCACGCACA 59.058 50.000 0.00 0.00 0.00 4.57
4508 4653 1.535462 GTTTTAGCTGACCACGCACAT 59.465 47.619 0.00 0.00 0.00 3.21
4509 4654 2.739913 GTTTTAGCTGACCACGCACATA 59.260 45.455 0.00 0.00 0.00 2.29
4510 4655 2.004583 TTAGCTGACCACGCACATAC 57.995 50.000 0.00 0.00 0.00 2.39
4511 4656 0.179148 TAGCTGACCACGCACATACG 60.179 55.000 0.00 0.00 39.50 3.06
4561 4707 7.382898 AGAGAACAGAGTAAAAAGGAGATGAC 58.617 38.462 0.00 0.00 0.00 3.06
4579 4725 1.727335 GACAAAGCCTGACTCGTTAGC 59.273 52.381 0.00 0.00 0.00 3.09
4623 4769 1.139163 CTCCAACGCCATTTTTGTGC 58.861 50.000 0.00 0.00 0.00 4.57
4626 4772 0.232816 CAACGCCATTTTTGTGCTGC 59.767 50.000 0.00 0.00 0.00 5.25
4642 4788 1.937546 CTGCGGGCTTCAACCATTCC 61.938 60.000 0.00 0.00 0.00 3.01
4718 4864 8.639761 AGAGTTAAATACACTCACAGTACTTGT 58.360 33.333 0.00 0.00 42.85 3.16
4719 4865 9.903682 GAGTTAAATACACTCACAGTACTTGTA 57.096 33.333 6.78 6.78 40.50 2.41
4720 4866 9.688592 AGTTAAATACACTCACAGTACTTGTAC 57.311 33.333 6.52 2.94 38.16 2.90
4721 4867 9.688592 GTTAAATACACTCACAGTACTTGTACT 57.311 33.333 7.55 7.55 38.16 2.73
4722 4868 9.903682 TTAAATACACTCACAGTACTTGTACTC 57.096 33.333 10.16 0.00 38.16 2.59
4723 4869 7.762588 AATACACTCACAGTACTTGTACTCT 57.237 36.000 10.16 0.00 38.16 3.24
4724 4870 5.692613 ACACTCACAGTACTTGTACTCTC 57.307 43.478 10.16 0.00 38.16 3.20
4725 4871 4.519730 ACACTCACAGTACTTGTACTCTCC 59.480 45.833 10.16 0.00 38.16 3.71
4726 4872 3.752222 ACTCACAGTACTTGTACTCTCCG 59.248 47.826 10.16 3.15 38.16 4.63
4727 4873 3.748083 TCACAGTACTTGTACTCTCCGT 58.252 45.455 10.16 3.71 38.16 4.69
4728 4874 4.898320 TCACAGTACTTGTACTCTCCGTA 58.102 43.478 10.16 0.00 38.16 4.02
4729 4875 5.494724 TCACAGTACTTGTACTCTCCGTAT 58.505 41.667 10.16 0.00 38.16 3.06
4730 4876 6.643388 TCACAGTACTTGTACTCTCCGTATA 58.357 40.000 10.16 0.00 38.16 1.47
4731 4877 7.105588 TCACAGTACTTGTACTCTCCGTATAA 58.894 38.462 10.16 0.00 38.16 0.98
4732 4878 7.607607 TCACAGTACTTGTACTCTCCGTATAAA 59.392 37.037 10.16 0.00 38.16 1.40
4733 4879 7.695618 CACAGTACTTGTACTCTCCGTATAAAC 59.304 40.741 10.16 0.00 38.16 2.01
4734 4880 7.609532 ACAGTACTTGTACTCTCCGTATAAACT 59.390 37.037 10.16 0.00 38.56 2.66
4735 4881 8.457261 CAGTACTTGTACTCTCCGTATAAACTT 58.543 37.037 10.16 0.00 30.25 2.66
4736 4882 9.672673 AGTACTTGTACTCTCCGTATAAACTTA 57.327 33.333 7.55 0.00 30.25 2.24
4737 4883 9.709600 GTACTTGTACTCTCCGTATAAACTTAC 57.290 37.037 3.88 0.00 30.25 2.34
4738 4884 8.572855 ACTTGTACTCTCCGTATAAACTTACT 57.427 34.615 0.00 0.00 30.25 2.24
4739 4885 9.018582 ACTTGTACTCTCCGTATAAACTTACTT 57.981 33.333 0.00 0.00 30.25 2.24
4740 4886 9.852091 CTTGTACTCTCCGTATAAACTTACTTT 57.148 33.333 0.00 0.00 30.25 2.66
4741 4887 9.630098 TTGTACTCTCCGTATAAACTTACTTTG 57.370 33.333 0.00 0.00 0.00 2.77
4742 4888 8.246180 TGTACTCTCCGTATAAACTTACTTTGG 58.754 37.037 0.00 0.00 0.00 3.28
4743 4889 7.237209 ACTCTCCGTATAAACTTACTTTGGT 57.763 36.000 0.00 0.00 0.00 3.67
4744 4890 7.318893 ACTCTCCGTATAAACTTACTTTGGTC 58.681 38.462 0.00 0.00 0.00 4.02
4745 4891 7.039504 ACTCTCCGTATAAACTTACTTTGGTCA 60.040 37.037 0.00 0.00 0.00 4.02
4746 4892 7.092716 TCTCCGTATAAACTTACTTTGGTCAC 58.907 38.462 0.00 0.00 0.00 3.67
4747 4893 6.996509 TCCGTATAAACTTACTTTGGTCACT 58.003 36.000 0.00 0.00 0.00 3.41
4748 4894 6.869913 TCCGTATAAACTTACTTTGGTCACTG 59.130 38.462 0.00 0.00 0.00 3.66
4749 4895 6.647895 CCGTATAAACTTACTTTGGTCACTGT 59.352 38.462 0.00 0.00 0.00 3.55
4750 4896 7.814107 CCGTATAAACTTACTTTGGTCACTGTA 59.186 37.037 0.00 0.00 0.00 2.74
4751 4897 9.362539 CGTATAAACTTACTTTGGTCACTGTAT 57.637 33.333 0.00 0.00 0.00 2.29
4755 4901 7.730364 AACTTACTTTGGTCACTGTATTCTG 57.270 36.000 0.00 0.00 0.00 3.02
4756 4902 6.827727 ACTTACTTTGGTCACTGTATTCTGT 58.172 36.000 0.00 0.00 0.00 3.41
4757 4903 6.929606 ACTTACTTTGGTCACTGTATTCTGTC 59.070 38.462 0.00 0.00 0.00 3.51
4758 4904 5.290493 ACTTTGGTCACTGTATTCTGTCA 57.710 39.130 0.00 0.00 0.00 3.58
4759 4905 5.680619 ACTTTGGTCACTGTATTCTGTCAA 58.319 37.500 0.00 0.00 0.00 3.18
4760 4906 6.119536 ACTTTGGTCACTGTATTCTGTCAAA 58.880 36.000 0.00 0.00 0.00 2.69
4761 4907 6.038271 ACTTTGGTCACTGTATTCTGTCAAAC 59.962 38.462 0.00 0.00 0.00 2.93
4762 4908 5.029807 TGGTCACTGTATTCTGTCAAACA 57.970 39.130 0.00 0.00 0.00 2.83
4763 4909 4.814234 TGGTCACTGTATTCTGTCAAACAC 59.186 41.667 0.00 0.00 0.00 3.32
4764 4910 4.814234 GGTCACTGTATTCTGTCAAACACA 59.186 41.667 0.00 0.00 0.00 3.72
4765 4911 5.295787 GGTCACTGTATTCTGTCAAACACAA 59.704 40.000 0.00 0.00 33.31 3.33
4766 4912 6.183360 GGTCACTGTATTCTGTCAAACACAAA 60.183 38.462 0.00 0.00 33.31 2.83
4767 4913 7.417612 GTCACTGTATTCTGTCAAACACAAAT 58.582 34.615 0.00 0.00 33.31 2.32
4768 4914 7.915397 GTCACTGTATTCTGTCAAACACAAATT 59.085 33.333 0.00 0.00 33.31 1.82
4769 4915 9.114952 TCACTGTATTCTGTCAAACACAAATTA 57.885 29.630 0.00 0.00 33.31 1.40
4770 4916 9.169468 CACTGTATTCTGTCAAACACAAATTAC 57.831 33.333 0.00 0.00 33.31 1.89
4771 4917 8.067784 ACTGTATTCTGTCAAACACAAATTACG 58.932 33.333 0.00 0.00 33.31 3.18
4772 4918 7.356540 TGTATTCTGTCAAACACAAATTACGG 58.643 34.615 0.00 0.00 33.31 4.02
4773 4919 5.821516 TTCTGTCAAACACAAATTACGGT 57.178 34.783 0.00 0.00 33.31 4.83
4774 4920 5.412526 TCTGTCAAACACAAATTACGGTC 57.587 39.130 0.00 0.00 33.31 4.79
4775 4921 4.876679 TCTGTCAAACACAAATTACGGTCA 59.123 37.500 0.00 0.00 33.31 4.02
4776 4922 5.529430 TCTGTCAAACACAAATTACGGTCAT 59.471 36.000 0.00 0.00 33.31 3.06
4777 4923 6.038825 TCTGTCAAACACAAATTACGGTCATT 59.961 34.615 0.00 0.00 33.31 2.57
4778 4924 7.226918 TCTGTCAAACACAAATTACGGTCATTA 59.773 33.333 0.00 0.00 33.31 1.90
4779 4925 7.877003 TGTCAAACACAAATTACGGTCATTAT 58.123 30.769 0.00 0.00 29.30 1.28
4780 4926 7.805542 TGTCAAACACAAATTACGGTCATTATG 59.194 33.333 0.00 0.00 29.30 1.90
4781 4927 7.806014 GTCAAACACAAATTACGGTCATTATGT 59.194 33.333 0.00 0.00 0.00 2.29
4782 4928 8.353684 TCAAACACAAATTACGGTCATTATGTT 58.646 29.630 9.87 9.87 30.11 2.71
4783 4929 9.613957 CAAACACAAATTACGGTCATTATGTTA 57.386 29.630 13.57 0.00 29.37 2.41
4785 4931 9.615295 AACACAAATTACGGTCATTATGTTAAC 57.385 29.630 12.39 0.00 28.42 2.01
4786 4932 8.238631 ACACAAATTACGGTCATTATGTTAACC 58.761 33.333 2.48 0.00 0.00 2.85
4787 4933 8.455682 CACAAATTACGGTCATTATGTTAACCT 58.544 33.333 2.48 0.00 0.00 3.50
4788 4934 8.671028 ACAAATTACGGTCATTATGTTAACCTC 58.329 33.333 2.48 0.00 0.00 3.85
4789 4935 8.889717 CAAATTACGGTCATTATGTTAACCTCT 58.110 33.333 2.48 0.00 0.00 3.69
4790 4936 8.433421 AATTACGGTCATTATGTTAACCTCTG 57.567 34.615 2.48 0.00 0.00 3.35
4791 4937 4.189231 ACGGTCATTATGTTAACCTCTGC 58.811 43.478 2.48 0.00 0.00 4.26
4792 4938 4.081087 ACGGTCATTATGTTAACCTCTGCT 60.081 41.667 2.48 0.00 0.00 4.24
4793 4939 4.271049 CGGTCATTATGTTAACCTCTGCTG 59.729 45.833 2.48 0.00 0.00 4.41
4794 4940 4.035675 GGTCATTATGTTAACCTCTGCTGC 59.964 45.833 2.48 0.00 0.00 5.25
4795 4941 3.871006 TCATTATGTTAACCTCTGCTGCG 59.129 43.478 2.48 0.00 0.00 5.18
4796 4942 1.651987 TATGTTAACCTCTGCTGCGC 58.348 50.000 0.00 0.00 0.00 6.09
4797 4943 0.321564 ATGTTAACCTCTGCTGCGCA 60.322 50.000 10.98 10.98 36.92 6.09
4798 4944 1.227999 TGTTAACCTCTGCTGCGCAC 61.228 55.000 5.66 4.25 33.79 5.34
4799 4945 1.671054 TTAACCTCTGCTGCGCACC 60.671 57.895 5.66 0.00 33.79 5.01
4800 4946 2.390306 TTAACCTCTGCTGCGCACCA 62.390 55.000 5.66 5.34 33.79 4.17
4801 4947 2.184020 TAACCTCTGCTGCGCACCAT 62.184 55.000 5.66 0.00 33.79 3.55
4802 4948 2.184020 AACCTCTGCTGCGCACCATA 62.184 55.000 5.66 0.00 33.79 2.74
4803 4949 2.176273 CCTCTGCTGCGCACCATAC 61.176 63.158 5.66 0.00 33.79 2.39
4804 4950 2.509111 TCTGCTGCGCACCATACG 60.509 61.111 5.66 0.00 33.79 3.06
4805 4951 3.566853 CTGCTGCGCACCATACGG 61.567 66.667 5.66 0.00 33.79 4.02
4807 4953 3.564027 GCTGCGCACCATACGGTC 61.564 66.667 5.66 0.00 44.71 4.79
4808 4954 2.125713 CTGCGCACCATACGGTCA 60.126 61.111 5.66 0.00 44.71 4.02
4809 4955 2.433491 TGCGCACCATACGGTCAC 60.433 61.111 5.66 0.00 44.71 3.67
4810 4956 2.125673 GCGCACCATACGGTCACT 60.126 61.111 0.30 0.00 44.71 3.41
4811 4957 2.452813 GCGCACCATACGGTCACTG 61.453 63.158 0.30 0.00 44.71 3.66
4812 4958 1.809619 CGCACCATACGGTCACTGG 60.810 63.158 0.00 3.53 44.71 4.00
4813 4959 2.106683 GCACCATACGGTCACTGGC 61.107 63.158 4.70 0.00 44.71 4.85
4814 4960 1.809619 CACCATACGGTCACTGGCG 60.810 63.158 4.70 0.00 44.71 5.69
4815 4961 2.280552 ACCATACGGTCACTGGCGT 61.281 57.895 4.70 0.00 44.71 5.68
4816 4962 1.518572 CCATACGGTCACTGGCGTC 60.519 63.158 0.00 0.00 0.00 5.19
4817 4963 1.214325 CATACGGTCACTGGCGTCA 59.786 57.895 0.00 0.00 0.00 4.35
4818 4964 0.389296 CATACGGTCACTGGCGTCAA 60.389 55.000 0.00 0.00 0.00 3.18
4819 4965 0.319083 ATACGGTCACTGGCGTCAAA 59.681 50.000 0.00 0.00 0.00 2.69
4820 4966 0.104487 TACGGTCACTGGCGTCAAAA 59.896 50.000 0.00 0.00 0.00 2.44
4821 4967 0.745128 ACGGTCACTGGCGTCAAAAA 60.745 50.000 0.00 0.00 0.00 1.94
4822 4968 0.316689 CGGTCACTGGCGTCAAAAAC 60.317 55.000 0.00 0.00 0.00 2.43
4833 4979 2.520686 GTCAAAAACGGCCGTATCTG 57.479 50.000 34.44 26.40 0.00 2.90
4834 4980 1.129811 GTCAAAAACGGCCGTATCTGG 59.870 52.381 34.44 19.89 0.00 3.86
4835 4981 1.002201 TCAAAAACGGCCGTATCTGGA 59.998 47.619 34.44 21.89 0.00 3.86
4836 4982 1.129811 CAAAAACGGCCGTATCTGGAC 59.870 52.381 34.44 0.00 0.00 4.02
4837 4983 0.322322 AAAACGGCCGTATCTGGACA 59.678 50.000 34.44 0.00 36.54 4.02
4838 4984 0.108329 AAACGGCCGTATCTGGACAG 60.108 55.000 34.44 0.00 36.54 3.51
4839 4985 2.279517 CGGCCGTATCTGGACAGC 60.280 66.667 19.50 0.00 36.54 4.40
4840 4986 2.786495 CGGCCGTATCTGGACAGCT 61.786 63.158 19.50 0.00 36.54 4.24
4841 4987 1.227380 GGCCGTATCTGGACAGCTG 60.227 63.158 13.48 13.48 36.84 4.24
4842 4988 1.227380 GCCGTATCTGGACAGCTGG 60.227 63.158 19.93 0.00 0.00 4.85
4843 4989 1.227380 CCGTATCTGGACAGCTGGC 60.227 63.158 19.93 16.59 0.00 4.85
4844 4990 1.517361 CGTATCTGGACAGCTGGCA 59.483 57.895 23.90 6.72 0.00 4.92
4845 4991 0.105593 CGTATCTGGACAGCTGGCAT 59.894 55.000 23.90 9.19 0.00 4.40
4846 4992 1.341209 CGTATCTGGACAGCTGGCATA 59.659 52.381 23.90 8.03 0.00 3.14
4847 4993 2.028658 CGTATCTGGACAGCTGGCATAT 60.029 50.000 23.90 13.54 0.00 1.78
4848 4994 2.563261 ATCTGGACAGCTGGCATATG 57.437 50.000 23.90 7.95 0.00 1.78
4849 4995 0.179037 TCTGGACAGCTGGCATATGC 60.179 55.000 23.90 19.79 41.14 3.14
4850 4996 0.179026 CTGGACAGCTGGCATATGCT 60.179 55.000 23.90 6.10 41.70 3.79
4854 5000 4.894201 AGCTGGCATATGCTGACC 57.106 55.556 26.12 10.88 41.70 4.02
4855 5001 1.227764 AGCTGGCATATGCTGACCG 60.228 57.895 26.12 8.36 41.70 4.79
4856 5002 2.901292 GCTGGCATATGCTGACCGC 61.901 63.158 26.12 14.11 41.70 5.68
4857 5003 1.227764 CTGGCATATGCTGACCGCT 60.228 57.895 26.12 0.00 41.70 5.52
4858 5004 0.816825 CTGGCATATGCTGACCGCTT 60.817 55.000 26.12 0.00 41.70 4.68
4859 5005 0.394216 TGGCATATGCTGACCGCTTT 60.394 50.000 26.12 0.00 41.70 3.51
4860 5006 0.029834 GGCATATGCTGACCGCTTTG 59.970 55.000 26.12 0.00 41.70 2.77
4861 5007 1.016627 GCATATGCTGACCGCTTTGA 58.983 50.000 20.64 0.00 40.11 2.69
4862 5008 1.268234 GCATATGCTGACCGCTTTGAC 60.268 52.381 20.64 0.00 40.11 3.18
4863 5009 1.331756 CATATGCTGACCGCTTTGACC 59.668 52.381 0.00 0.00 40.11 4.02
4864 5010 0.739462 TATGCTGACCGCTTTGACCG 60.739 55.000 0.00 0.00 40.11 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
136 138 2.300433 GCCACATGAATGGATGTAGCA 58.700 47.619 6.54 0.00 43.02 3.49
175 178 3.228017 TCGCCGGTCACACCTCAA 61.228 61.111 1.90 0.00 35.66 3.02
197 200 1.137872 TGCAACAAAAATGCCGTCCTT 59.862 42.857 0.00 0.00 43.16 3.36
204 207 1.941975 AGGCTGTTGCAACAAAAATGC 59.058 42.857 30.62 27.36 44.08 3.56
245 251 5.643379 AATCGGATGTAGCAAAACACATT 57.357 34.783 0.00 0.00 35.55 2.71
321 329 3.183574 CGTGTCAGTCGTAGCAAATGAAA 59.816 43.478 0.00 0.00 0.00 2.69
346 354 2.513897 GCCCCGTGGTAGCATGTC 60.514 66.667 12.88 0.00 0.00 3.06
348 356 1.893808 GATGCCCCGTGGTAGCATG 60.894 63.158 15.86 7.17 46.81 4.06
377 385 1.905894 TCACCGATGATTGGTTCCAGA 59.094 47.619 0.37 0.00 37.72 3.86
640 649 2.023673 CCGTCAGATCAGAGCTTCTCT 58.976 52.381 0.00 0.00 42.11 3.10
641 650 1.535860 GCCGTCAGATCAGAGCTTCTC 60.536 57.143 0.00 0.00 0.00 2.87
642 651 0.459489 GCCGTCAGATCAGAGCTTCT 59.541 55.000 0.00 0.00 0.00 2.85
643 652 0.174389 TGCCGTCAGATCAGAGCTTC 59.826 55.000 0.00 0.00 0.00 3.86
644 653 0.829333 ATGCCGTCAGATCAGAGCTT 59.171 50.000 0.00 0.00 0.00 3.74
645 654 0.388659 GATGCCGTCAGATCAGAGCT 59.611 55.000 0.00 0.00 0.00 4.09
646 655 0.938637 CGATGCCGTCAGATCAGAGC 60.939 60.000 0.00 0.00 0.00 4.09
647 656 0.938637 GCGATGCCGTCAGATCAGAG 60.939 60.000 0.00 0.00 38.24 3.35
648 657 1.066422 GCGATGCCGTCAGATCAGA 59.934 57.895 0.00 0.00 38.24 3.27
649 658 1.227060 TGCGATGCCGTCAGATCAG 60.227 57.895 0.00 0.00 38.24 2.90
650 659 1.519234 GTGCGATGCCGTCAGATCA 60.519 57.895 0.00 0.00 38.24 2.92
651 660 1.485838 CTGTGCGATGCCGTCAGATC 61.486 60.000 0.00 0.00 39.85 2.75
652 661 1.520120 CTGTGCGATGCCGTCAGAT 60.520 57.895 0.00 0.00 39.85 2.90
653 662 2.125952 CTGTGCGATGCCGTCAGA 60.126 61.111 0.00 0.00 39.85 3.27
654 663 3.857854 GCTGTGCGATGCCGTCAG 61.858 66.667 0.00 0.00 40.14 3.51
655 664 4.678499 TGCTGTGCGATGCCGTCA 62.678 61.111 0.00 0.00 38.24 4.35
656 665 3.857854 CTGCTGTGCGATGCCGTC 61.858 66.667 0.00 0.00 38.24 4.79
657 666 3.670637 ATCTGCTGTGCGATGCCGT 62.671 57.895 0.00 0.00 38.24 5.68
658 667 2.879070 GATCTGCTGTGCGATGCCG 61.879 63.158 0.00 0.00 39.16 5.69
659 668 2.879070 CGATCTGCTGTGCGATGCC 61.879 63.158 0.00 0.00 0.00 4.40
660 669 2.624811 CGATCTGCTGTGCGATGC 59.375 61.111 0.00 0.00 0.00 3.91
661 670 1.227060 TCCGATCTGCTGTGCGATG 60.227 57.895 8.76 0.00 0.00 3.84
662 671 1.227089 GTCCGATCTGCTGTGCGAT 60.227 57.895 8.76 0.00 0.00 4.58
663 672 2.181777 GTCCGATCTGCTGTGCGA 59.818 61.111 8.76 0.00 0.00 5.10
664 673 3.250323 CGTCCGATCTGCTGTGCG 61.250 66.667 0.00 0.00 0.00 5.34
665 674 2.887568 CCGTCCGATCTGCTGTGC 60.888 66.667 0.00 0.00 0.00 4.57
666 675 2.887568 GCCGTCCGATCTGCTGTG 60.888 66.667 0.00 0.00 0.00 3.66
667 676 3.071206 AGCCGTCCGATCTGCTGT 61.071 61.111 0.00 0.00 31.70 4.40
668 677 2.584418 CAGCCGTCCGATCTGCTG 60.584 66.667 8.21 8.21 44.43 4.41
669 678 3.842923 CCAGCCGTCCGATCTGCT 61.843 66.667 0.00 0.00 33.52 4.24
670 679 4.899239 CCCAGCCGTCCGATCTGC 62.899 72.222 0.00 0.00 0.00 4.26
671 680 3.144120 CTCCCAGCCGTCCGATCTG 62.144 68.421 0.00 0.00 0.00 2.90
672 681 2.835431 CTCCCAGCCGTCCGATCT 60.835 66.667 0.00 0.00 0.00 2.75
673 682 4.593864 GCTCCCAGCCGTCCGATC 62.594 72.222 0.00 0.00 34.48 3.69
677 686 4.459089 GTCTGCTCCCAGCCGTCC 62.459 72.222 0.00 0.00 41.51 4.79
678 687 4.459089 GGTCTGCTCCCAGCCGTC 62.459 72.222 0.00 0.00 41.51 4.79
686 695 4.388499 TTTCGGCCGGTCTGCTCC 62.388 66.667 27.83 0.00 0.00 4.70
687 696 3.119096 GTTTCGGCCGGTCTGCTC 61.119 66.667 27.83 5.50 0.00 4.26
688 697 2.748058 AATGTTTCGGCCGGTCTGCT 62.748 55.000 27.83 3.30 0.00 4.24
689 698 2.253414 GAATGTTTCGGCCGGTCTGC 62.253 60.000 27.83 11.92 0.00 4.26
690 699 1.794222 GAATGTTTCGGCCGGTCTG 59.206 57.895 27.83 0.78 0.00 3.51
691 700 4.296265 GAATGTTTCGGCCGGTCT 57.704 55.556 27.83 3.86 0.00 3.85
700 709 2.178273 GCACCGGCCGAATGTTTC 59.822 61.111 30.73 8.17 0.00 2.78
701 710 3.732892 CGCACCGGCCGAATGTTT 61.733 61.111 30.73 0.00 36.38 2.83
1041 1071 0.248949 GTTCGTGGAGAGGGCGATAC 60.249 60.000 0.00 0.00 34.52 2.24
1079 1109 3.315949 GGTCGTACCTGCCACCCA 61.316 66.667 0.00 0.00 34.73 4.51
1080 1110 4.446413 CGGTCGTACCTGCCACCC 62.446 72.222 3.15 0.00 35.66 4.61
1107 1137 6.932960 AGAAAGCATCCATGAAAAAGAAAAGG 59.067 34.615 0.00 0.00 0.00 3.11
1108 1138 7.440255 ACAGAAAGCATCCATGAAAAAGAAAAG 59.560 33.333 0.00 0.00 0.00 2.27
1109 1139 7.274447 ACAGAAAGCATCCATGAAAAAGAAAA 58.726 30.769 0.00 0.00 0.00 2.29
1111 1141 6.409524 ACAGAAAGCATCCATGAAAAAGAA 57.590 33.333 0.00 0.00 0.00 2.52
1112 1142 6.409524 AACAGAAAGCATCCATGAAAAAGA 57.590 33.333 0.00 0.00 0.00 2.52
1113 1143 7.486802 AAAACAGAAAGCATCCATGAAAAAG 57.513 32.000 0.00 0.00 0.00 2.27
1116 1146 7.603404 CCATTAAAACAGAAAGCATCCATGAAA 59.397 33.333 0.00 0.00 0.00 2.69
1120 1150 6.855763 TCCATTAAAACAGAAAGCATCCAT 57.144 33.333 0.00 0.00 0.00 3.41
1127 1157 8.359642 TCCAAGACAATCCATTAAAACAGAAAG 58.640 33.333 0.00 0.00 0.00 2.62
1133 1163 5.812127 GCCATCCAAGACAATCCATTAAAAC 59.188 40.000 0.00 0.00 0.00 2.43
1140 1170 1.031571 GCGCCATCCAAGACAATCCA 61.032 55.000 0.00 0.00 0.00 3.41
1143 1173 2.114670 CGGCGCCATCCAAGACAAT 61.115 57.895 28.98 0.00 0.00 2.71
1144 1174 2.745884 CGGCGCCATCCAAGACAA 60.746 61.111 28.98 0.00 0.00 3.18
1186 1216 9.614792 CAACAGAAAACCTATTACTAGCCTTAT 57.385 33.333 0.00 0.00 0.00 1.73
1188 1218 7.459234 ACAACAGAAAACCTATTACTAGCCTT 58.541 34.615 0.00 0.00 0.00 4.35
1191 1221 9.649167 TTCTACAACAGAAAACCTATTACTAGC 57.351 33.333 0.00 0.00 40.40 3.42
1217 1250 5.591877 GGAATCAAATCTATTCACCTGCTGT 59.408 40.000 0.00 0.00 35.46 4.40
1235 1268 5.250543 TCACTAAACTGGAATCAGGGAATCA 59.749 40.000 0.00 0.00 44.99 2.57
1356 1389 9.851686 ACAGCAGTTCCTTATAATGATGAAATA 57.148 29.630 7.95 0.00 31.98 1.40
1360 1393 6.038603 GCAACAGCAGTTCCTTATAATGATGA 59.961 38.462 7.95 0.00 35.28 2.92
1361 1394 6.039047 AGCAACAGCAGTTCCTTATAATGATG 59.961 38.462 0.00 0.87 35.28 3.07
1362 1395 6.039047 CAGCAACAGCAGTTCCTTATAATGAT 59.961 38.462 0.00 0.00 35.28 2.45
1598 1636 2.792290 CGACGTTCGCTGGCTCATG 61.792 63.158 0.00 0.00 31.14 3.07
1635 1673 8.232913 AGATACTTCATCAGAAAGAGGTCTAC 57.767 38.462 0.00 0.00 35.96 2.59
1765 1815 2.435069 TGAACAAGAGTGGACGGGTAAA 59.565 45.455 0.00 0.00 0.00 2.01
1766 1816 2.036733 CTGAACAAGAGTGGACGGGTAA 59.963 50.000 0.00 0.00 0.00 2.85
1781 1831 2.229792 GATTGCACAAGTCCCTGAACA 58.770 47.619 0.00 0.00 0.00 3.18
1787 1837 3.181476 ACTGTTTTGATTGCACAAGTCCC 60.181 43.478 0.00 0.00 0.00 4.46
1826 1876 3.951663 AGGGGTTTCAACACTATACAGC 58.048 45.455 0.00 0.00 31.47 4.40
1833 1883 6.614694 AAAAACTAAAGGGGTTTCAACACT 57.385 33.333 0.00 0.00 36.09 3.55
1860 1910 4.040339 TCAGCTTTGTCCTCACTTGTCATA 59.960 41.667 0.00 0.00 0.00 2.15
2089 2141 0.896019 TTACAATGGGGGTGGCAACG 60.896 55.000 0.00 0.00 42.51 4.10
2291 2344 7.277539 CAGTTCTTGGAATTTGCACTTACAAAA 59.722 33.333 7.16 3.44 42.45 2.44
2320 2373 5.231991 CCACTTTTTCCGAACAAAAGACATG 59.768 40.000 16.06 0.00 41.81 3.21
2444 2502 5.186198 GTTTGGCATCACCTGAAGTAGTAT 58.814 41.667 0.00 0.00 40.22 2.12
2518 2576 8.096621 TGACTATGGAATGGTTAAGTATTGGA 57.903 34.615 0.00 0.00 38.55 3.53
2533 2591 7.342581 TGGCAGTAATAACAATGACTATGGAA 58.657 34.615 0.00 0.00 0.00 3.53
2601 2659 2.038952 TGCTGCTCTGAATAACTGTGGT 59.961 45.455 0.00 0.00 0.00 4.16
2607 2665 1.065126 ACCCCTGCTGCTCTGAATAAC 60.065 52.381 0.00 0.00 0.00 1.89
2623 2681 8.484575 AGTTAAGCTAGATAAACTAAAGACCCC 58.515 37.037 0.00 0.00 30.62 4.95
2718 2776 7.380602 GCAATGCAGATTATTAACTTCATGACC 59.619 37.037 0.00 0.00 0.00 4.02
2756 2814 2.350522 CATTTCGAGTCTTCACTGGGG 58.649 52.381 0.00 0.00 30.63 4.96
2789 2847 1.937223 GTGTCATTCACGACAACACCA 59.063 47.619 0.00 0.00 46.99 4.17
2791 2849 3.878086 ATGTGTCATTCACGACAACAC 57.122 42.857 0.00 0.00 46.99 3.32
2806 2864 2.362077 GCAAACAGGACAGGAAATGTGT 59.638 45.455 0.00 0.00 44.17 3.72
2807 2865 2.624838 AGCAAACAGGACAGGAAATGTG 59.375 45.455 0.00 0.00 44.17 3.21
2809 2867 2.624838 ACAGCAAACAGGACAGGAAATG 59.375 45.455 0.00 0.00 0.00 2.32
2816 2874 3.876914 CAGTTCTAACAGCAAACAGGACA 59.123 43.478 0.00 0.00 0.00 4.02
2818 2876 4.127171 GACAGTTCTAACAGCAAACAGGA 58.873 43.478 0.00 0.00 0.00 3.86
2826 2884 6.159988 ACTTCATACTGACAGTTCTAACAGC 58.840 40.000 14.50 0.00 34.25 4.40
2855 2913 1.832167 CAACCCACCCCACACAAGG 60.832 63.158 0.00 0.00 0.00 3.61
2856 2914 0.183971 TACAACCCACCCCACACAAG 59.816 55.000 0.00 0.00 0.00 3.16
2857 2915 0.106619 GTACAACCCACCCCACACAA 60.107 55.000 0.00 0.00 0.00 3.33
2901 2959 0.172803 AGAACGACGTGCCTACATCC 59.827 55.000 0.00 0.00 0.00 3.51
3110 3175 6.035368 TCAAGCTATAATGCCTTGCAAAAA 57.965 33.333 0.00 0.00 43.62 1.94
3223 3332 0.686441 TGTACTCCCTCCGTCCCATG 60.686 60.000 0.00 0.00 0.00 3.66
3280 3389 8.984891 TGGCAACTGATTGTTAATTATTTCAG 57.015 30.769 10.51 10.51 38.17 3.02
3366 3475 7.549615 TCTCAGATCTTATGCATCACTTTTG 57.450 36.000 0.19 0.00 0.00 2.44
3455 3564 2.394632 ACCCGGTAATACTGCAGATCA 58.605 47.619 23.35 5.22 0.00 2.92
3461 3570 2.981898 AGTTGAACCCGGTAATACTGC 58.018 47.619 0.00 0.00 0.00 4.40
3472 3581 7.391833 AGTTTATCAGATCTCAAAGTTGAACCC 59.608 37.037 0.00 0.00 36.64 4.11
3530 3639 3.301771 GCATGTAAATGCGCCGAAAATTC 60.302 43.478 4.18 0.00 37.84 2.17
3549 3658 8.796475 GGTGTTCTATGATTATAACCAATGCAT 58.204 33.333 0.00 0.00 0.00 3.96
3566 3676 6.161855 TGCGAGAATATCTTGGTGTTCTAT 57.838 37.500 0.00 0.00 31.51 1.98
3602 3712 0.179045 ATCTTCCGGGATTTCCTGCG 60.179 55.000 0.00 0.00 41.13 5.18
3637 3747 0.392706 TGTCATTGTGCAGGACGACT 59.607 50.000 0.00 0.00 34.32 4.18
3977 4088 0.673644 ATATATCGGTTGCAGCGGCC 60.674 55.000 6.32 0.00 39.89 6.13
4015 4128 3.840991 AGGTTATAGCCATGTCGGTAGA 58.159 45.455 8.48 0.00 36.97 2.59
4016 4129 5.417894 TGATAGGTTATAGCCATGTCGGTAG 59.582 44.000 8.48 0.00 36.97 3.18
4017 4130 5.326900 TGATAGGTTATAGCCATGTCGGTA 58.673 41.667 8.48 0.00 36.97 4.02
4018 4131 4.157246 TGATAGGTTATAGCCATGTCGGT 58.843 43.478 8.48 0.00 36.97 4.69
4021 4134 8.396272 ACAAAATGATAGGTTATAGCCATGTC 57.604 34.615 8.48 3.61 0.00 3.06
4060 4173 7.032377 TCGGTCTATATGAGATGATATGTGC 57.968 40.000 0.00 0.00 36.29 4.57
4151 4264 6.914757 CACTGTTCTCTGGAAAAGAAATGTTC 59.085 38.462 3.32 0.00 38.70 3.18
4334 4455 8.885494 ATTAGCTGAGACAACTAATTCTCATC 57.115 34.615 0.00 0.00 45.61 2.92
4335 4456 9.678260 AAATTAGCTGAGACAACTAATTCTCAT 57.322 29.630 15.56 3.70 45.61 2.90
4336 4457 9.155975 GAAATTAGCTGAGACAACTAATTCTCA 57.844 33.333 15.56 3.43 44.80 3.27
4337 4458 9.377312 AGAAATTAGCTGAGACAACTAATTCTC 57.623 33.333 15.56 14.46 39.95 2.87
4338 4459 9.732130 AAGAAATTAGCTGAGACAACTAATTCT 57.268 29.630 15.56 12.57 39.95 2.40
4339 4460 9.980780 GAAGAAATTAGCTGAGACAACTAATTC 57.019 33.333 15.56 11.27 39.95 2.17
4340 4461 9.507329 TGAAGAAATTAGCTGAGACAACTAATT 57.493 29.630 11.74 11.74 41.49 1.40
4342 4463 8.150945 AGTGAAGAAATTAGCTGAGACAACTAA 58.849 33.333 0.00 0.00 0.00 2.24
4348 4480 6.400515 CGAACAGTGAAGAAATTAGCTGAGAC 60.401 42.308 0.00 0.00 0.00 3.36
4381 4513 3.807622 AGAAAAAGCACGAATCTTGACGA 59.192 39.130 0.00 0.00 0.00 4.20
4422 4554 1.448985 CACAACGGAACATACCCTGG 58.551 55.000 0.00 0.00 0.00 4.45
4423 4555 0.802494 GCACAACGGAACATACCCTG 59.198 55.000 0.00 0.00 0.00 4.45
4424 4556 0.690762 AGCACAACGGAACATACCCT 59.309 50.000 0.00 0.00 0.00 4.34
4426 4558 0.719465 CGAGCACAACGGAACATACC 59.281 55.000 0.00 0.00 0.00 2.73
4450 4595 2.868253 GGCACAGCCGAGGTAAAAT 58.132 52.632 0.00 0.00 39.62 1.82
4488 4633 0.941542 TGTGCGTGGTCAGCTAAAAC 59.058 50.000 0.00 0.00 35.28 2.43
4507 4652 4.037565 TCTCAAGGCATCGACAATACGTAT 59.962 41.667 1.14 1.14 34.70 3.06
4508 4653 3.379057 TCTCAAGGCATCGACAATACGTA 59.621 43.478 0.00 0.00 34.70 3.57
4509 4654 2.165641 TCTCAAGGCATCGACAATACGT 59.834 45.455 0.00 0.00 34.70 3.57
4510 4655 2.809446 TCTCAAGGCATCGACAATACG 58.191 47.619 0.00 0.00 0.00 3.06
4511 4656 5.741388 ATTTCTCAAGGCATCGACAATAC 57.259 39.130 0.00 0.00 0.00 1.89
4512 4657 7.768582 TCTTAATTTCTCAAGGCATCGACAATA 59.231 33.333 0.00 0.00 0.00 1.90
4561 4707 1.728971 CAGCTAACGAGTCAGGCTTTG 59.271 52.381 0.00 0.00 0.00 2.77
4623 4769 1.508088 GAATGGTTGAAGCCCGCAG 59.492 57.895 0.00 0.00 0.00 5.18
4626 4772 3.603365 GGGAATGGTTGAAGCCCG 58.397 61.111 0.00 0.00 0.00 6.13
4693 4839 8.813643 ACAAGTACTGTGAGTGTATTTAACTC 57.186 34.615 0.00 0.00 43.62 3.01
4694 4840 9.688592 GTACAAGTACTGTGAGTGTATTTAACT 57.311 33.333 7.45 0.00 39.20 2.24
4695 4841 9.688592 AGTACAAGTACTGTGAGTGTATTTAAC 57.311 33.333 11.81 0.00 44.11 2.01
4696 4842 9.903682 GAGTACAAGTACTGTGAGTGTATTTAA 57.096 33.333 16.93 0.00 45.63 1.52
4697 4843 9.293404 AGAGTACAAGTACTGTGAGTGTATTTA 57.707 33.333 16.93 0.00 45.63 1.40
4698 4844 8.179509 AGAGTACAAGTACTGTGAGTGTATTT 57.820 34.615 16.93 1.23 45.63 1.40
4699 4845 7.094291 GGAGAGTACAAGTACTGTGAGTGTATT 60.094 40.741 16.93 4.09 45.63 1.89
4700 4846 6.374894 GGAGAGTACAAGTACTGTGAGTGTAT 59.625 42.308 16.93 0.00 45.63 2.29
4701 4847 5.704515 GGAGAGTACAAGTACTGTGAGTGTA 59.295 44.000 16.93 0.00 45.63 2.90
4702 4848 4.519730 GGAGAGTACAAGTACTGTGAGTGT 59.480 45.833 16.93 0.00 45.63 3.55
4703 4849 4.378563 CGGAGAGTACAAGTACTGTGAGTG 60.379 50.000 16.93 0.00 45.63 3.51
4704 4850 3.752222 CGGAGAGTACAAGTACTGTGAGT 59.248 47.826 16.93 0.00 45.63 3.41
4705 4851 3.752222 ACGGAGAGTACAAGTACTGTGAG 59.248 47.826 16.93 11.09 45.63 3.51
4706 4852 3.748083 ACGGAGAGTACAAGTACTGTGA 58.252 45.455 16.93 0.00 45.63 3.58
4707 4853 5.814764 ATACGGAGAGTACAAGTACTGTG 57.185 43.478 16.93 5.64 45.63 3.66
4708 4854 7.609532 AGTTTATACGGAGAGTACAAGTACTGT 59.390 37.037 16.93 13.16 45.63 3.55
4709 4855 7.983307 AGTTTATACGGAGAGTACAAGTACTG 58.017 38.462 16.93 5.87 45.63 2.74
4711 4857 9.709600 GTAAGTTTATACGGAGAGTACAAGTAC 57.290 37.037 2.18 2.18 38.29 2.73
4712 4858 9.672673 AGTAAGTTTATACGGAGAGTACAAGTA 57.327 33.333 0.00 0.00 38.29 2.24
4713 4859 8.572855 AGTAAGTTTATACGGAGAGTACAAGT 57.427 34.615 0.00 0.00 38.29 3.16
4714 4860 9.852091 AAAGTAAGTTTATACGGAGAGTACAAG 57.148 33.333 0.00 0.00 38.29 3.16
4715 4861 9.630098 CAAAGTAAGTTTATACGGAGAGTACAA 57.370 33.333 0.00 0.00 38.29 2.41
4716 4862 8.246180 CCAAAGTAAGTTTATACGGAGAGTACA 58.754 37.037 0.00 0.00 38.29 2.90
4717 4863 8.246871 ACCAAAGTAAGTTTATACGGAGAGTAC 58.753 37.037 0.00 0.00 38.29 2.73
4718 4864 8.353423 ACCAAAGTAAGTTTATACGGAGAGTA 57.647 34.615 0.00 0.00 40.03 2.59
4719 4865 7.039504 TGACCAAAGTAAGTTTATACGGAGAGT 60.040 37.037 0.00 0.00 0.00 3.24
4720 4866 7.275123 GTGACCAAAGTAAGTTTATACGGAGAG 59.725 40.741 0.00 0.00 0.00 3.20
4721 4867 7.039504 AGTGACCAAAGTAAGTTTATACGGAGA 60.040 37.037 0.00 0.00 0.00 3.71
4722 4868 7.063074 CAGTGACCAAAGTAAGTTTATACGGAG 59.937 40.741 0.00 0.00 0.00 4.63
4723 4869 6.869913 CAGTGACCAAAGTAAGTTTATACGGA 59.130 38.462 0.00 0.00 0.00 4.69
4724 4870 6.647895 ACAGTGACCAAAGTAAGTTTATACGG 59.352 38.462 0.00 0.00 0.00 4.02
4725 4871 7.647907 ACAGTGACCAAAGTAAGTTTATACG 57.352 36.000 0.00 0.00 0.00 3.06
4729 4875 9.268268 CAGAATACAGTGACCAAAGTAAGTTTA 57.732 33.333 0.00 0.00 0.00 2.01
4730 4876 7.773690 ACAGAATACAGTGACCAAAGTAAGTTT 59.226 33.333 0.00 0.00 0.00 2.66
4731 4877 7.280356 ACAGAATACAGTGACCAAAGTAAGTT 58.720 34.615 0.00 0.00 0.00 2.66
4732 4878 6.827727 ACAGAATACAGTGACCAAAGTAAGT 58.172 36.000 0.00 0.00 0.00 2.24
4733 4879 6.929049 TGACAGAATACAGTGACCAAAGTAAG 59.071 38.462 0.00 0.00 0.00 2.34
4734 4880 6.822442 TGACAGAATACAGTGACCAAAGTAA 58.178 36.000 0.00 0.00 0.00 2.24
4735 4881 6.413783 TGACAGAATACAGTGACCAAAGTA 57.586 37.500 0.00 0.00 0.00 2.24
4736 4882 5.290493 TGACAGAATACAGTGACCAAAGT 57.710 39.130 0.00 0.00 0.00 2.66
4737 4883 6.038161 TGTTTGACAGAATACAGTGACCAAAG 59.962 38.462 0.00 0.00 0.00 2.77
4738 4884 5.883115 TGTTTGACAGAATACAGTGACCAAA 59.117 36.000 0.00 0.00 0.00 3.28
4739 4885 5.295787 GTGTTTGACAGAATACAGTGACCAA 59.704 40.000 0.00 0.00 0.00 3.67
4740 4886 4.814234 GTGTTTGACAGAATACAGTGACCA 59.186 41.667 0.00 0.00 0.00 4.02
4741 4887 4.814234 TGTGTTTGACAGAATACAGTGACC 59.186 41.667 0.00 0.00 0.00 4.02
4742 4888 5.984233 TGTGTTTGACAGAATACAGTGAC 57.016 39.130 0.00 0.00 0.00 3.67
4743 4889 6.993786 TTTGTGTTTGACAGAATACAGTGA 57.006 33.333 0.00 0.00 35.44 3.41
4744 4890 9.169468 GTAATTTGTGTTTGACAGAATACAGTG 57.831 33.333 0.00 0.00 35.44 3.66
4745 4891 8.067784 CGTAATTTGTGTTTGACAGAATACAGT 58.932 33.333 0.00 0.00 35.44 3.55
4746 4892 7.533900 CCGTAATTTGTGTTTGACAGAATACAG 59.466 37.037 0.00 0.00 35.44 2.74
4747 4893 7.012515 ACCGTAATTTGTGTTTGACAGAATACA 59.987 33.333 0.00 0.00 35.44 2.29
4748 4894 7.357303 ACCGTAATTTGTGTTTGACAGAATAC 58.643 34.615 0.00 0.00 35.44 1.89
4749 4895 7.226918 TGACCGTAATTTGTGTTTGACAGAATA 59.773 33.333 0.00 0.00 35.44 1.75
4750 4896 6.038825 TGACCGTAATTTGTGTTTGACAGAAT 59.961 34.615 0.00 0.00 35.44 2.40
4751 4897 5.354513 TGACCGTAATTTGTGTTTGACAGAA 59.645 36.000 0.00 0.00 35.44 3.02
4752 4898 4.876679 TGACCGTAATTTGTGTTTGACAGA 59.123 37.500 0.00 0.00 35.44 3.41
4753 4899 5.163302 TGACCGTAATTTGTGTTTGACAG 57.837 39.130 0.00 0.00 35.44 3.51
4754 4900 5.759506 ATGACCGTAATTTGTGTTTGACA 57.240 34.783 0.00 0.00 0.00 3.58
4755 4901 7.806014 ACATAATGACCGTAATTTGTGTTTGAC 59.194 33.333 0.00 0.00 0.00 3.18
4756 4902 7.877003 ACATAATGACCGTAATTTGTGTTTGA 58.123 30.769 0.00 0.00 0.00 2.69
4757 4903 8.514136 AACATAATGACCGTAATTTGTGTTTG 57.486 30.769 6.37 0.00 28.54 2.93
4759 4905 9.615295 GTTAACATAATGACCGTAATTTGTGTT 57.385 29.630 0.00 12.90 33.28 3.32
4760 4906 8.238631 GGTTAACATAATGACCGTAATTTGTGT 58.761 33.333 8.10 0.00 0.00 3.72
4761 4907 8.455682 AGGTTAACATAATGACCGTAATTTGTG 58.544 33.333 8.10 0.00 37.26 3.33
4762 4908 8.570068 AGGTTAACATAATGACCGTAATTTGT 57.430 30.769 8.10 0.00 37.26 2.83
4763 4909 8.889717 AGAGGTTAACATAATGACCGTAATTTG 58.110 33.333 8.10 0.00 37.26 2.32
4764 4910 8.889717 CAGAGGTTAACATAATGACCGTAATTT 58.110 33.333 8.10 0.00 37.26 1.82
4765 4911 7.012044 GCAGAGGTTAACATAATGACCGTAATT 59.988 37.037 8.10 0.00 37.26 1.40
4766 4912 6.482308 GCAGAGGTTAACATAATGACCGTAAT 59.518 38.462 8.10 0.00 37.26 1.89
4767 4913 5.813672 GCAGAGGTTAACATAATGACCGTAA 59.186 40.000 8.10 0.00 37.26 3.18
4768 4914 5.128171 AGCAGAGGTTAACATAATGACCGTA 59.872 40.000 8.10 0.00 37.26 4.02
4769 4915 4.081087 AGCAGAGGTTAACATAATGACCGT 60.081 41.667 8.10 0.00 37.26 4.83
4770 4916 4.271049 CAGCAGAGGTTAACATAATGACCG 59.729 45.833 8.10 0.00 37.26 4.79
4771 4917 4.035675 GCAGCAGAGGTTAACATAATGACC 59.964 45.833 8.10 0.00 0.00 4.02
4772 4918 4.260375 CGCAGCAGAGGTTAACATAATGAC 60.260 45.833 8.10 0.75 0.00 3.06
4773 4919 3.871006 CGCAGCAGAGGTTAACATAATGA 59.129 43.478 8.10 0.00 0.00 2.57
4774 4920 4.201208 CGCAGCAGAGGTTAACATAATG 57.799 45.455 8.10 4.38 0.00 1.90
4798 4944 1.518572 GACGCCAGTGACCGTATGG 60.519 63.158 8.45 0.00 37.87 2.74
4799 4945 0.389296 TTGACGCCAGTGACCGTATG 60.389 55.000 8.45 0.00 37.87 2.39
4800 4946 0.319083 TTTGACGCCAGTGACCGTAT 59.681 50.000 8.45 0.00 37.87 3.06
4801 4947 0.104487 TTTTGACGCCAGTGACCGTA 59.896 50.000 8.45 0.00 37.87 4.02
4802 4948 0.745128 TTTTTGACGCCAGTGACCGT 60.745 50.000 8.25 8.25 40.85 4.83
4803 4949 0.316689 GTTTTTGACGCCAGTGACCG 60.317 55.000 0.00 0.00 0.00 4.79
4804 4950 0.316689 CGTTTTTGACGCCAGTGACC 60.317 55.000 0.00 0.00 45.86 4.02
4805 4951 3.142796 CGTTTTTGACGCCAGTGAC 57.857 52.632 0.00 0.00 45.86 3.67
4814 4960 1.129811 CCAGATACGGCCGTTTTTGAC 59.870 52.381 38.94 19.89 0.00 3.18
4815 4961 1.002201 TCCAGATACGGCCGTTTTTGA 59.998 47.619 38.94 22.77 0.00 2.69
4816 4962 1.129811 GTCCAGATACGGCCGTTTTTG 59.870 52.381 38.94 31.03 0.00 2.44
4817 4963 1.270947 TGTCCAGATACGGCCGTTTTT 60.271 47.619 38.94 21.82 0.00 1.94
4818 4964 0.322322 TGTCCAGATACGGCCGTTTT 59.678 50.000 38.94 24.72 0.00 2.43
4819 4965 0.108329 CTGTCCAGATACGGCCGTTT 60.108 55.000 38.94 30.09 0.00 3.60
4820 4966 1.515954 CTGTCCAGATACGGCCGTT 59.484 57.895 38.94 23.87 0.00 4.44
4821 4967 3.077519 GCTGTCCAGATACGGCCGT 62.078 63.158 36.01 36.01 44.45 5.68
4822 4968 2.279517 GCTGTCCAGATACGGCCG 60.280 66.667 26.86 26.86 44.45 6.13
4825 4971 1.227380 GCCAGCTGTCCAGATACGG 60.227 63.158 13.81 0.00 0.00 4.02
4826 4972 0.105593 ATGCCAGCTGTCCAGATACG 59.894 55.000 13.81 0.00 0.00 3.06
4827 4973 3.332919 CATATGCCAGCTGTCCAGATAC 58.667 50.000 13.81 0.00 0.00 2.24
4828 4974 2.289882 GCATATGCCAGCTGTCCAGATA 60.290 50.000 17.26 1.80 34.31 1.98
4829 4975 1.544982 GCATATGCCAGCTGTCCAGAT 60.545 52.381 17.26 9.25 34.31 2.90
4830 4976 0.179037 GCATATGCCAGCTGTCCAGA 60.179 55.000 17.26 7.18 34.31 3.86
4831 4977 0.179026 AGCATATGCCAGCTGTCCAG 60.179 55.000 23.96 0.00 43.38 3.86
4832 4978 1.917495 AGCATATGCCAGCTGTCCA 59.083 52.632 23.96 9.85 43.38 4.02
4833 4979 4.894201 AGCATATGCCAGCTGTCC 57.106 55.556 23.96 3.71 43.38 4.02
4837 4983 1.227764 CGGTCAGCATATGCCAGCT 60.228 57.895 23.96 2.38 43.38 4.24
4838 4984 3.337619 CGGTCAGCATATGCCAGC 58.662 61.111 23.96 18.20 43.38 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.