Multiple sequence alignment - TraesCS2B01G030800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G030800 chr2B 100.000 6072 0 0 1 6072 14060744 14054673 0.000000e+00 11213.0
1 TraesCS2B01G030800 chr2B 94.588 850 41 5 1 847 773000650 772999803 0.000000e+00 1310.0
2 TraesCS2B01G030800 chr2B 92.570 323 12 5 1824 2143 716449000 716449313 2.580000e-123 453.0
3 TraesCS2B01G030800 chr2B 96.237 186 7 0 1956 2141 697426818 697427003 7.650000e-79 305.0
4 TraesCS2B01G030800 chr2A 90.236 1229 93 12 3924 5142 10586182 10587393 0.000000e+00 1580.0
5 TraesCS2B01G030800 chr2A 94.342 972 39 8 2419 3379 10584702 10585668 0.000000e+00 1476.0
6 TraesCS2B01G030800 chr2A 91.000 800 42 12 5293 6072 10587768 10588557 0.000000e+00 1051.0
7 TraesCS2B01G030800 chr2A 92.308 533 29 5 1888 2417 10583662 10584185 0.000000e+00 747.0
8 TraesCS2B01G030800 chr2A 91.416 466 20 6 3376 3841 10585728 10586173 6.680000e-174 621.0
9 TraesCS2B01G030800 chr2A 88.824 510 31 10 977 1471 10582233 10582731 2.420000e-168 603.0
10 TraesCS2B01G030800 chr2A 92.655 354 19 4 1540 1893 10583087 10583433 2.530000e-138 503.0
11 TraesCS2B01G030800 chr2A 94.737 266 12 2 5808 6072 10589156 10589420 4.380000e-111 412.0
12 TraesCS2B01G030800 chr2A 85.714 84 8 4 5828 5908 766100494 766100576 1.080000e-12 86.1
13 TraesCS2B01G030800 chr2D 88.989 1226 100 18 3924 5142 10322501 10323698 0.000000e+00 1483.0
14 TraesCS2B01G030800 chr2D 91.170 974 49 15 2419 3379 10321019 10321968 0.000000e+00 1288.0
15 TraesCS2B01G030800 chr2D 93.341 856 46 9 1 849 527887320 527886469 0.000000e+00 1254.0
16 TraesCS2B01G030800 chr2D 91.466 914 62 9 1507 2417 10319600 10320500 0.000000e+00 1242.0
17 TraesCS2B01G030800 chr2D 92.874 856 52 7 1 853 446730375 446731224 0.000000e+00 1234.0
18 TraesCS2B01G030800 chr2D 93.137 510 30 5 2607 3113 352977607 352977100 0.000000e+00 743.0
19 TraesCS2B01G030800 chr2D 91.296 540 39 7 5538 6070 10324436 10324974 0.000000e+00 730.0
20 TraesCS2B01G030800 chr2D 94.635 466 24 1 3376 3841 10322028 10322492 0.000000e+00 721.0
21 TraesCS2B01G030800 chr2D 86.813 637 44 21 897 1507 10318647 10319269 0.000000e+00 675.0
22 TraesCS2B01G030800 chr2D 97.872 141 3 0 2456 2596 352977839 352977699 1.690000e-60 244.0
23 TraesCS2B01G030800 chr2D 87.879 132 13 3 5158 5289 10324049 10324177 1.050000e-32 152.0
24 TraesCS2B01G030800 chr1B 92.857 854 51 9 1 847 405676706 405675856 0.000000e+00 1230.0
25 TraesCS2B01G030800 chr1B 82.653 98 17 0 5830 5927 652286750 652286847 3.010000e-13 87.9
26 TraesCS2B01G030800 chr1B 94.872 39 2 0 5869 5907 684249173 684249211 1.830000e-05 62.1
27 TraesCS2B01G030800 chr1D 92.614 853 55 6 1 847 458743894 458743044 0.000000e+00 1219.0
28 TraesCS2B01G030800 chr1D 98.333 60 1 0 6011 6070 6547170 6547111 8.320000e-19 106.0
29 TraesCS2B01G030800 chr5D 92.606 852 55 6 1 847 545958351 545957503 0.000000e+00 1218.0
30 TraesCS2B01G030800 chr7D 92.506 854 55 7 1 847 158954264 158953413 0.000000e+00 1214.0
31 TraesCS2B01G030800 chr6D 92.497 853 56 6 1 847 467363776 467362926 0.000000e+00 1214.0
32 TraesCS2B01G030800 chr6D 98.333 60 1 0 6010 6069 15530237 15530178 8.320000e-19 106.0
33 TraesCS2B01G030800 chr7B 92.497 853 54 8 1 847 27076151 27076999 0.000000e+00 1212.0
34 TraesCS2B01G030800 chr7B 87.273 550 34 13 1597 2146 46395245 46394732 4.050000e-166 595.0
35 TraesCS2B01G030800 chr7B 91.284 436 28 8 1711 2146 46419884 46419459 2.440000e-163 586.0
36 TraesCS2B01G030800 chr7B 93.004 243 9 1 1904 2146 233206714 233206480 1.250000e-91 348.0
37 TraesCS2B01G030800 chr5A 92.900 662 34 8 2607 3257 395893151 395892492 0.000000e+00 950.0
38 TraesCS2B01G030800 chr5A 98.621 145 1 1 2453 2596 395893387 395893243 7.810000e-64 255.0
39 TraesCS2B01G030800 chr5A 85.714 77 8 3 5834 5908 482829251 482829326 1.810000e-10 78.7
40 TraesCS2B01G030800 chr5A 84.615 65 10 0 5862 5926 350268153 350268217 1.410000e-06 65.8
41 TraesCS2B01G030800 chr6B 95.745 188 8 0 1956 2143 669523224 669523411 2.750000e-78 303.0
42 TraesCS2B01G030800 chr4B 95.745 188 8 0 1956 2143 106278571 106278758 2.750000e-78 303.0
43 TraesCS2B01G030800 chr3B 96.216 185 5 2 1960 2143 109040003 109040186 9.890000e-78 302.0
44 TraesCS2B01G030800 chr3B 96.774 62 2 0 6009 6070 559755958 559755897 2.990000e-18 104.0
45 TraesCS2B01G030800 chr3D 96.825 63 1 1 6009 6070 120743988 120744050 2.990000e-18 104.0
46 TraesCS2B01G030800 chr4D 95.161 62 3 0 6009 6070 30299279 30299218 1.390000e-16 99.0
47 TraesCS2B01G030800 chr1A 96.667 60 1 1 6012 6070 11528788 11528847 1.390000e-16 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G030800 chr2B 14054673 14060744 6071 True 11213.000000 11213 100.000000 1 6072 1 chr2B.!!$R1 6071
1 TraesCS2B01G030800 chr2B 772999803 773000650 847 True 1310.000000 1310 94.588000 1 847 1 chr2B.!!$R2 846
2 TraesCS2B01G030800 chr2A 10582233 10589420 7187 False 874.125000 1580 91.939750 977 6072 8 chr2A.!!$F2 5095
3 TraesCS2B01G030800 chr2D 527886469 527887320 851 True 1254.000000 1254 93.341000 1 849 1 chr2D.!!$R1 848
4 TraesCS2B01G030800 chr2D 446730375 446731224 849 False 1234.000000 1234 92.874000 1 853 1 chr2D.!!$F1 852
5 TraesCS2B01G030800 chr2D 10318647 10324974 6327 False 898.714286 1483 90.321143 897 6070 7 chr2D.!!$F2 5173
6 TraesCS2B01G030800 chr2D 352977100 352977839 739 True 493.500000 743 95.504500 2456 3113 2 chr2D.!!$R2 657
7 TraesCS2B01G030800 chr1B 405675856 405676706 850 True 1230.000000 1230 92.857000 1 847 1 chr1B.!!$R1 846
8 TraesCS2B01G030800 chr1D 458743044 458743894 850 True 1219.000000 1219 92.614000 1 847 1 chr1D.!!$R2 846
9 TraesCS2B01G030800 chr5D 545957503 545958351 848 True 1218.000000 1218 92.606000 1 847 1 chr5D.!!$R1 846
10 TraesCS2B01G030800 chr7D 158953413 158954264 851 True 1214.000000 1214 92.506000 1 847 1 chr7D.!!$R1 846
11 TraesCS2B01G030800 chr6D 467362926 467363776 850 True 1214.000000 1214 92.497000 1 847 1 chr6D.!!$R2 846
12 TraesCS2B01G030800 chr7B 27076151 27076999 848 False 1212.000000 1212 92.497000 1 847 1 chr7B.!!$F1 846
13 TraesCS2B01G030800 chr7B 46394732 46395245 513 True 595.000000 595 87.273000 1597 2146 1 chr7B.!!$R1 549
14 TraesCS2B01G030800 chr5A 395892492 395893387 895 True 602.500000 950 95.760500 2453 3257 2 chr5A.!!$R1 804

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
879 894 0.178975 CCGTCTCTAGGGGATCTGCT 60.179 60.000 0.00 0.00 0.0 4.24 F
1595 2025 0.251297 TTGTCACAGGAATGGCTGGG 60.251 55.000 0.00 0.00 0.0 4.45 F
1623 2053 0.253044 TATCAAGGGTGTGGAGCTGC 59.747 55.000 0.00 0.00 0.0 5.25 F
3467 4814 0.961019 TGACCCAAACTTGAGCATGC 59.039 50.000 10.51 10.51 0.0 4.06 F
4794 6150 1.078143 GGAAGGCGGCACAGAAGAT 60.078 57.895 13.08 0.00 0.0 2.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2170 2840 2.025887 ACAGAGGACCCCAAATCATCAC 60.026 50.000 0.0 0.0 29.24 3.06 R
3136 4412 0.690192 TCCAGTTGCCGATTCCTGAA 59.310 50.000 0.0 0.0 0.00 3.02 R
3546 4894 1.153429 GTGCACGGGATAGGTGGAC 60.153 63.158 0.0 1.0 46.70 4.02 R
4823 6182 0.110010 GCTCTTCGCTTTGCTGGTTC 60.110 55.000 0.0 0.0 35.14 3.62 R
5850 7690 2.287644 GCAACCATTTTTCACAGCAACC 59.712 45.455 0.0 0.0 0.00 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 3.782992 TCTAGCTGATGGCATCTATCCA 58.217 45.455 26.49 7.30 44.79 3.41
151 152 1.677217 GCGAAGATTCAGGAGGCTTGT 60.677 52.381 0.00 0.00 0.00 3.16
233 234 0.951040 CGCTCAGACCTGGTCCAAAC 60.951 60.000 22.81 9.92 32.18 2.93
292 293 4.581868 TGCACAACATGATCATTGAGAGA 58.418 39.130 14.50 0.00 0.00 3.10
392 393 1.258445 AACCTGGACTGCCTACCTCG 61.258 60.000 0.00 0.00 34.31 4.63
399 400 0.686441 ACTGCCTACCTCGGTATGCA 60.686 55.000 20.07 20.07 45.21 3.96
434 435 1.771565 CCCACAGGTGCATCATCAAT 58.228 50.000 0.00 0.00 0.00 2.57
458 459 3.493002 GCAGCAAGATCTGATAGAGCACT 60.493 47.826 0.00 0.00 31.99 4.40
728 738 1.450669 GGACCAAAATCGGCGGCTA 60.451 57.895 7.21 0.00 0.00 3.93
799 813 4.257654 TCACCGGCTCGCCCAAAA 62.258 61.111 0.00 0.00 0.00 2.44
822 836 1.602377 GCGATTTTTATGCGCCCTAGT 59.398 47.619 4.18 0.00 44.55 2.57
849 864 1.418334 ACGGCTGGAGATGCTCTTAT 58.582 50.000 0.00 0.00 0.00 1.73
853 868 3.006323 CGGCTGGAGATGCTCTTATACTT 59.994 47.826 0.00 0.00 0.00 2.24
854 869 4.565022 GGCTGGAGATGCTCTTATACTTC 58.435 47.826 0.00 0.00 0.00 3.01
855 870 4.283212 GGCTGGAGATGCTCTTATACTTCT 59.717 45.833 0.00 0.00 0.00 2.85
856 871 5.469479 GCTGGAGATGCTCTTATACTTCTC 58.531 45.833 0.00 0.00 36.73 2.87
857 872 5.243730 GCTGGAGATGCTCTTATACTTCTCT 59.756 44.000 0.00 0.00 37.30 3.10
858 873 6.432783 GCTGGAGATGCTCTTATACTTCTCTA 59.567 42.308 0.00 0.00 37.30 2.43
859 874 7.040062 GCTGGAGATGCTCTTATACTTCTCTAA 60.040 40.741 0.00 0.00 37.30 2.10
860 875 8.172352 TGGAGATGCTCTTATACTTCTCTAAC 57.828 38.462 0.00 0.00 37.30 2.34
861 876 7.231722 TGGAGATGCTCTTATACTTCTCTAACC 59.768 40.741 0.00 0.00 37.30 2.85
862 877 7.209471 AGATGCTCTTATACTTCTCTAACCG 57.791 40.000 0.00 0.00 0.00 4.44
863 878 6.773685 AGATGCTCTTATACTTCTCTAACCGT 59.226 38.462 0.00 0.00 0.00 4.83
864 879 6.374565 TGCTCTTATACTTCTCTAACCGTC 57.625 41.667 0.00 0.00 0.00 4.79
865 880 6.120905 TGCTCTTATACTTCTCTAACCGTCT 58.879 40.000 0.00 0.00 0.00 4.18
866 881 6.260493 TGCTCTTATACTTCTCTAACCGTCTC 59.740 42.308 0.00 0.00 0.00 3.36
867 882 6.484308 GCTCTTATACTTCTCTAACCGTCTCT 59.516 42.308 0.00 0.00 0.00 3.10
868 883 7.656948 GCTCTTATACTTCTCTAACCGTCTCTA 59.343 40.741 0.00 0.00 0.00 2.43
869 884 9.199982 CTCTTATACTTCTCTAACCGTCTCTAG 57.800 40.741 0.00 0.00 0.00 2.43
870 885 8.149647 TCTTATACTTCTCTAACCGTCTCTAGG 58.850 40.741 0.00 0.00 0.00 3.02
871 886 3.888583 ACTTCTCTAACCGTCTCTAGGG 58.111 50.000 0.00 0.00 36.67 3.53
872 887 3.215975 CTTCTCTAACCGTCTCTAGGGG 58.784 54.545 0.00 0.00 34.80 4.79
873 888 2.485659 TCTCTAACCGTCTCTAGGGGA 58.514 52.381 0.00 0.00 34.80 4.81
874 889 3.054576 TCTCTAACCGTCTCTAGGGGAT 58.945 50.000 0.00 0.00 34.80 3.85
875 890 3.072768 TCTCTAACCGTCTCTAGGGGATC 59.927 52.174 0.00 0.00 34.80 3.36
876 891 3.054576 TCTAACCGTCTCTAGGGGATCT 58.945 50.000 0.00 0.00 34.80 2.75
877 892 2.074729 AACCGTCTCTAGGGGATCTG 57.925 55.000 0.00 0.00 34.80 2.90
878 893 0.468400 ACCGTCTCTAGGGGATCTGC 60.468 60.000 0.00 0.00 34.80 4.26
879 894 0.178975 CCGTCTCTAGGGGATCTGCT 60.179 60.000 0.00 0.00 0.00 4.24
880 895 1.074084 CCGTCTCTAGGGGATCTGCTA 59.926 57.143 0.00 0.00 0.00 3.49
881 896 2.489255 CCGTCTCTAGGGGATCTGCTAA 60.489 54.545 0.00 0.00 0.00 3.09
882 897 3.223435 CGTCTCTAGGGGATCTGCTAAA 58.777 50.000 0.00 0.00 0.00 1.85
883 898 3.637229 CGTCTCTAGGGGATCTGCTAAAA 59.363 47.826 0.00 0.00 0.00 1.52
884 899 4.282195 CGTCTCTAGGGGATCTGCTAAAAT 59.718 45.833 0.00 0.00 0.00 1.82
885 900 5.221541 CGTCTCTAGGGGATCTGCTAAAATT 60.222 44.000 0.00 0.00 0.00 1.82
886 901 5.994668 GTCTCTAGGGGATCTGCTAAAATTG 59.005 44.000 0.00 0.00 0.00 2.32
887 902 4.718961 TCTAGGGGATCTGCTAAAATTGC 58.281 43.478 0.00 0.00 0.00 3.56
888 903 3.677156 AGGGGATCTGCTAAAATTGCT 57.323 42.857 0.00 0.00 0.00 3.91
889 904 3.986435 AGGGGATCTGCTAAAATTGCTT 58.014 40.909 0.00 0.00 0.00 3.91
890 905 4.356436 AGGGGATCTGCTAAAATTGCTTT 58.644 39.130 0.00 0.00 0.00 3.51
891 906 4.779489 AGGGGATCTGCTAAAATTGCTTTT 59.221 37.500 0.00 0.00 38.17 2.27
892 907 5.957774 AGGGGATCTGCTAAAATTGCTTTTA 59.042 36.000 0.00 0.00 36.09 1.52
922 937 2.044946 GCCACCCAGCGAAAGGAT 60.045 61.111 0.00 0.00 0.00 3.24
965 981 4.808767 ACCCCTAAAAGAAAACTGGAGT 57.191 40.909 0.00 0.00 0.00 3.85
971 987 6.296803 CCTAAAAGAAAACTGGAGTGGTAGT 58.703 40.000 0.00 0.00 0.00 2.73
978 994 2.269241 GGAGTGGTAGTGGCCAGC 59.731 66.667 5.11 0.39 39.53 4.85
1192 1208 0.466372 GGGCAAGAACCTATGGCTCC 60.466 60.000 0.00 0.00 41.46 4.70
1242 1259 2.033141 TTCGGTCCGTCTCCGTCT 59.967 61.111 11.88 0.00 46.86 4.18
1246 1263 2.435586 GTCCGTCTCCGTCTCCGA 60.436 66.667 0.00 0.00 35.63 4.55
1252 1269 1.030488 GTCTCCGTCTCCGATCCACA 61.030 60.000 0.00 0.00 35.63 4.17
1255 1272 2.494918 CGTCTCCGATCCACACCC 59.505 66.667 0.00 0.00 35.63 4.61
1260 1277 4.109675 CCGATCCACACCCCCACC 62.110 72.222 0.00 0.00 0.00 4.61
1261 1278 3.326578 CGATCCACACCCCCACCA 61.327 66.667 0.00 0.00 0.00 4.17
1262 1279 2.355115 GATCCACACCCCCACCAC 59.645 66.667 0.00 0.00 0.00 4.16
1263 1280 2.451493 ATCCACACCCCCACCACA 60.451 61.111 0.00 0.00 0.00 4.17
1264 1281 1.856873 ATCCACACCCCCACCACAT 60.857 57.895 0.00 0.00 0.00 3.21
1265 1282 1.442886 ATCCACACCCCCACCACATT 61.443 55.000 0.00 0.00 0.00 2.71
1266 1283 1.907807 CCACACCCCCACCACATTG 60.908 63.158 0.00 0.00 0.00 2.82
1275 1292 2.431782 CCCCACCACATTGATTCAATCC 59.568 50.000 8.95 0.00 31.05 3.01
1286 1303 1.882623 GATTCAATCCGCTCCCATTCC 59.117 52.381 0.00 0.00 0.00 3.01
1315 1332 2.644299 TCTCCTCCCTTTCTGCAATGAA 59.356 45.455 0.00 0.00 0.00 2.57
1361 1384 4.015872 AGAACGGCATTGTCCTTTTAGA 57.984 40.909 0.00 0.00 0.00 2.10
1391 1426 0.392336 TGTTTGCCCTGCCATGTTTC 59.608 50.000 0.00 0.00 0.00 2.78
1400 1437 2.811431 CCTGCCATGTTTCGTTCTTGTA 59.189 45.455 0.00 0.00 0.00 2.41
1408 1447 6.524239 CCATGTTTCGTTCTTGTATGATTGTG 59.476 38.462 0.00 0.00 0.00 3.33
1412 1451 4.888917 TCGTTCTTGTATGATTGTGACCA 58.111 39.130 0.00 0.00 0.00 4.02
1478 1531 5.089970 TCAGATTCATGAACAGTAGTGGG 57.910 43.478 11.07 0.00 0.00 4.61
1488 1541 1.768870 ACAGTAGTGGGGGCATGTATC 59.231 52.381 1.92 0.00 0.00 2.24
1495 1548 3.084039 GTGGGGGCATGTATCATGTATG 58.916 50.000 10.68 0.00 0.00 2.39
1499 1552 4.019321 GGGGGCATGTATCATGTATGTACT 60.019 45.833 10.68 0.00 0.00 2.73
1526 1956 0.685785 CTGGAGAGGCCTCTACTGCA 60.686 60.000 38.94 26.05 41.19 4.41
1595 2025 0.251297 TTGTCACAGGAATGGCTGGG 60.251 55.000 0.00 0.00 0.00 4.45
1604 2034 2.724117 AGGAATGGCTGGGGCTATTTAT 59.276 45.455 1.55 0.00 46.91 1.40
1623 2053 0.253044 TATCAAGGGTGTGGAGCTGC 59.747 55.000 0.00 0.00 0.00 5.25
1640 2070 4.672409 AGCTGCGCAAATATAAAAGGTTC 58.328 39.130 13.05 0.00 0.00 3.62
1877 2310 1.257750 ACCACCTGATGCTCTGCGTA 61.258 55.000 0.00 0.00 0.00 4.42
1893 2560 6.305877 GCTCTGCGTACTGTGATATGTTATAC 59.694 42.308 0.00 0.00 0.00 1.47
1970 2637 7.800767 AGTATGAATGTATGATTGACGAATGC 58.199 34.615 0.00 0.00 0.00 3.56
2215 2885 1.933853 GACATAGGTACAGCAAAGCCG 59.066 52.381 0.00 0.00 0.00 5.52
2246 2916 2.306805 TGAAGGTGTGATCAGGCATTCT 59.693 45.455 18.40 6.09 0.00 2.40
2257 2927 3.445008 TCAGGCATTCTGGACTAGACTT 58.555 45.455 0.00 0.00 43.53 3.01
2281 2951 9.455847 CTTCTACTCTTTGCATAAATATTTGCC 57.544 33.333 11.05 0.05 38.08 4.52
2324 2994 3.626930 AGTGTTGCTAAAACTTGACCCA 58.373 40.909 0.00 0.00 0.00 4.51
2430 3620 9.140286 GAATGGCCTTCAACTTATTACTTTTTC 57.860 33.333 3.32 0.00 33.78 2.29
2434 3624 8.027189 GGCCTTCAACTTATTACTTTTTCGAAT 58.973 33.333 0.00 0.00 0.00 3.34
2634 3905 7.985634 TTTGTTTTTGTTATTCTGTCTCTGC 57.014 32.000 0.00 0.00 0.00 4.26
2879 4153 8.015087 TCAAAACTTGATTGTGAGCTTATAACG 58.985 33.333 0.00 0.00 34.08 3.18
3030 4304 3.195683 GCACACAGCCACACACAA 58.804 55.556 0.00 0.00 37.23 3.33
3033 4307 2.112198 ACACAGCCACACACAACCG 61.112 57.895 0.00 0.00 0.00 4.44
3136 4412 7.400599 TGAATCATCTTTGCAGAGCTTTATT 57.599 32.000 0.00 0.00 30.36 1.40
3203 4487 5.880332 GTCTGTTTCCCTGACATTGCTATTA 59.120 40.000 0.00 0.00 40.63 0.98
3324 4608 8.877864 AGGTGGTTTGTTATAAAGATCAATCA 57.122 30.769 0.00 0.00 0.00 2.57
3395 4742 9.135211 CCATATGTCACATGGACTCTCTACTCC 62.135 48.148 3.87 0.00 44.95 3.85
3426 4773 9.905713 AGAAAGGCTAATTTGTATTAGTGATCA 57.094 29.630 0.00 0.00 43.38 2.92
3465 4812 4.961438 AAATTGACCCAAACTTGAGCAT 57.039 36.364 0.00 0.00 0.00 3.79
3467 4814 0.961019 TGACCCAAACTTGAGCATGC 59.039 50.000 10.51 10.51 0.00 4.06
3484 4832 1.203237 TGCCCTCTAGCAACATAGCA 58.797 50.000 0.00 0.00 40.56 3.49
3533 4881 3.334691 CTTCGCCTTAACACTGATTCCA 58.665 45.455 0.00 0.00 0.00 3.53
3546 4894 5.295292 ACACTGATTCCAATTGCTATCTTCG 59.705 40.000 15.01 8.81 0.00 3.79
3802 5150 2.425668 CGGTGTTGACCTTTGACCTTTT 59.574 45.455 0.00 0.00 40.58 2.27
3841 5189 6.016024 TCAGCTGCAAAATAGTGAAAGACATT 60.016 34.615 9.47 0.00 0.00 2.71
3842 5190 6.643770 CAGCTGCAAAATAGTGAAAGACATTT 59.356 34.615 0.00 0.00 0.00 2.32
3843 5191 7.170320 CAGCTGCAAAATAGTGAAAGACATTTT 59.830 33.333 0.00 0.00 31.22 1.82
3866 5214 5.845391 TTTTCACCCAAAACTGTAGGAAG 57.155 39.130 0.00 0.00 0.00 3.46
3867 5215 2.858745 TCACCCAAAACTGTAGGAAGC 58.141 47.619 0.00 0.00 0.00 3.86
3868 5216 2.441750 TCACCCAAAACTGTAGGAAGCT 59.558 45.455 0.00 0.00 0.00 3.74
3869 5217 2.814336 CACCCAAAACTGTAGGAAGCTC 59.186 50.000 0.00 0.00 0.00 4.09
3870 5218 2.711547 ACCCAAAACTGTAGGAAGCTCT 59.288 45.455 0.00 0.00 0.00 4.09
3871 5219 3.138468 ACCCAAAACTGTAGGAAGCTCTT 59.862 43.478 0.00 0.00 0.00 2.85
3872 5220 3.753797 CCCAAAACTGTAGGAAGCTCTTC 59.246 47.826 1.12 1.12 38.80 2.87
3885 5233 5.966742 GAAGCTCTTCCCACAGTAATTTT 57.033 39.130 0.00 0.00 33.64 1.82
3886 5234 6.332735 GAAGCTCTTCCCACAGTAATTTTT 57.667 37.500 0.00 0.00 33.64 1.94
3887 5235 7.448748 GAAGCTCTTCCCACAGTAATTTTTA 57.551 36.000 0.00 0.00 33.64 1.52
3888 5236 8.056407 GAAGCTCTTCCCACAGTAATTTTTAT 57.944 34.615 0.00 0.00 33.64 1.40
3889 5237 9.174166 GAAGCTCTTCCCACAGTAATTTTTATA 57.826 33.333 0.00 0.00 33.64 0.98
3890 5238 9.528489 AAGCTCTTCCCACAGTAATTTTTATAA 57.472 29.630 0.00 0.00 0.00 0.98
3891 5239 9.528489 AGCTCTTCCCACAGTAATTTTTATAAA 57.472 29.630 0.00 0.00 0.00 1.40
3977 5325 4.008539 GCAGTTAGCATGCAAGAGTAAC 57.991 45.455 21.98 18.00 43.31 2.50
4039 5392 9.787626 CATCAAACAAATTTCAGAAAATTCGAG 57.212 29.630 0.00 0.00 42.82 4.04
4042 5395 8.806634 CAAACAAATTTCAGAAAATTCGAGTGA 58.193 29.630 0.00 0.00 42.82 3.41
4044 5397 7.707104 ACAAATTTCAGAAAATTCGAGTGACT 58.293 30.769 0.00 0.00 42.82 3.41
4047 5400 5.673337 TTCAGAAAATTCGAGTGACTTGG 57.327 39.130 0.00 0.00 0.00 3.61
4050 5403 6.285224 TCAGAAAATTCGAGTGACTTGGTAA 58.715 36.000 0.00 0.00 0.00 2.85
4066 5419 7.885922 TGACTTGGTAATATTTTCTGCCACTTA 59.114 33.333 0.00 0.00 0.00 2.24
4105 5458 1.900016 TGCTTGCACAGAGGCTTGG 60.900 57.895 0.00 0.00 34.04 3.61
4115 5468 3.826157 CACAGAGGCTTGGGTTGAATTAA 59.174 43.478 0.00 0.00 0.00 1.40
4132 5485 6.769512 TGAATTAAAACTGTAGGAGTCTGCT 58.230 36.000 0.00 0.00 31.73 4.24
4133 5486 7.224297 TGAATTAAAACTGTAGGAGTCTGCTT 58.776 34.615 0.00 0.00 31.73 3.91
4134 5487 7.719633 TGAATTAAAACTGTAGGAGTCTGCTTT 59.280 33.333 0.00 0.00 31.73 3.51
4135 5488 9.216117 GAATTAAAACTGTAGGAGTCTGCTTTA 57.784 33.333 0.00 0.00 31.73 1.85
4139 5492 7.440523 AAACTGTAGGAGTCTGCTTTATTTG 57.559 36.000 0.00 0.00 31.73 2.32
4164 5517 3.770388 TGTACAATACTTGATCCCCGTGA 59.230 43.478 0.00 0.00 0.00 4.35
4167 5520 4.261801 ACAATACTTGATCCCCGTGAAAG 58.738 43.478 0.00 0.00 0.00 2.62
4195 5548 3.960571 AGTGACATTTCTAGCATGGCTT 58.039 40.909 8.58 0.00 40.44 4.35
4211 5564 4.301072 TGGCTTGCAGTTATCTTTACCT 57.699 40.909 0.00 0.00 0.00 3.08
4255 5608 7.531857 TGGTGACAATTTTGTACATGGTAAT 57.468 32.000 0.00 0.00 42.43 1.89
4256 5609 7.598278 TGGTGACAATTTTGTACATGGTAATC 58.402 34.615 0.00 0.00 42.43 1.75
4257 5610 7.231519 TGGTGACAATTTTGTACATGGTAATCA 59.768 33.333 0.00 0.00 42.43 2.57
4261 5614 9.638239 GACAATTTTGTACATGGTAATCACATT 57.362 29.630 0.00 0.00 42.43 2.71
4271 5624 6.606796 ACATGGTAATCACATTATTTGCCTGA 59.393 34.615 0.00 0.00 0.00 3.86
4274 5627 6.663093 TGGTAATCACATTATTTGCCTGACTT 59.337 34.615 0.00 0.00 0.00 3.01
4323 5676 1.344438 TCTGTCGAAGTTGGTGCTGAT 59.656 47.619 0.00 0.00 0.00 2.90
4371 5724 7.236432 TGGATATTCCATTCTAGGGAGAAGAAG 59.764 40.741 0.00 0.00 42.67 2.85
4418 5771 6.924612 GGTCCGATAATTTACTCTTCCTCTTC 59.075 42.308 0.00 0.00 0.00 2.87
4422 5775 9.069082 CCGATAATTTACTCTTCCTCTTCTCTA 57.931 37.037 0.00 0.00 0.00 2.43
4465 5820 4.334759 GCACGTCCTAGTTGTCTATCAGTA 59.665 45.833 0.00 0.00 0.00 2.74
4470 5825 7.012515 ACGTCCTAGTTGTCTATCAGTATTGAG 59.987 40.741 0.00 0.00 36.61 3.02
4471 5826 7.012515 CGTCCTAGTTGTCTATCAGTATTGAGT 59.987 40.741 0.00 0.00 36.61 3.41
4549 5904 1.631405 AGCTTCAGACTGAGCTCACT 58.369 50.000 13.74 6.68 29.31 3.41
4558 5913 3.951037 AGACTGAGCTCACTGTACTATGG 59.049 47.826 13.74 1.17 0.00 2.74
4564 5919 3.515502 AGCTCACTGTACTATGGCTTTCA 59.484 43.478 0.00 0.00 0.00 2.69
4572 5927 4.457603 TGTACTATGGCTTTCATTTTGCGT 59.542 37.500 0.00 0.00 37.30 5.24
4579 5934 3.244976 GCTTTCATTTTGCGTGCTATGT 58.755 40.909 0.00 0.00 0.00 2.29
4603 5958 5.643379 TTTTTCAGACTTGCTGTGTTCTT 57.357 34.783 0.00 0.00 45.14 2.52
4604 5959 5.643379 TTTTCAGACTTGCTGTGTTCTTT 57.357 34.783 0.00 0.00 45.14 2.52
4614 5969 4.454678 TGCTGTGTTCTTTTCTGACTCAT 58.545 39.130 0.00 0.00 0.00 2.90
4616 5971 4.320057 GCTGTGTTCTTTTCTGACTCATGG 60.320 45.833 0.00 0.00 0.00 3.66
4714 6070 3.823304 GGTCAAAGAAAGGCAGAGACAAT 59.177 43.478 0.00 0.00 0.00 2.71
4794 6150 1.078143 GGAAGGCGGCACAGAAGAT 60.078 57.895 13.08 0.00 0.00 2.40
4795 6151 1.372087 GGAAGGCGGCACAGAAGATG 61.372 60.000 13.08 0.00 0.00 2.90
4801 6157 1.364626 CGGCACAGAAGATGGCTGTC 61.365 60.000 0.00 0.00 44.28 3.51
4816 6172 2.093973 GGCTGTCGATGAAGAGGAAGAA 60.094 50.000 0.00 0.00 0.00 2.52
4823 6182 5.691305 GTCGATGAAGAGGAAGAAGATGATG 59.309 44.000 0.00 0.00 0.00 3.07
4930 6289 4.201970 GGAGACGAAGATGAAGAGTCGAAT 60.202 45.833 0.00 0.00 36.98 3.34
4939 6298 0.541863 AAGAGTCGAATCCCGCCAAT 59.458 50.000 9.63 0.00 38.37 3.16
4972 6331 2.037687 CCAGCAAAGGGCCCATCA 59.962 61.111 27.56 0.00 46.50 3.07
4984 6343 1.205655 GGCCCATCAAAGAAAGAAGGC 59.794 52.381 0.00 0.00 37.62 4.35
4985 6344 1.205655 GCCCATCAAAGAAAGAAGGCC 59.794 52.381 0.00 0.00 34.29 5.19
4998 6357 0.319641 GAAGGCCGTTCTTCAGACGT 60.320 55.000 0.00 0.00 41.88 4.34
5002 6361 0.507358 GCCGTTCTTCAGACGTTGAC 59.493 55.000 0.00 0.00 34.94 3.18
5005 6364 2.316792 CGTTCTTCAGACGTTGACGAT 58.683 47.619 10.87 0.00 43.02 3.73
5006 6365 2.089121 CGTTCTTCAGACGTTGACGATG 59.911 50.000 10.87 8.56 43.02 3.84
5007 6366 3.305964 GTTCTTCAGACGTTGACGATGA 58.694 45.455 10.87 10.64 43.02 2.92
5008 6367 3.636282 TCTTCAGACGTTGACGATGAA 57.364 42.857 19.47 19.47 41.90 2.57
5010 6369 2.347697 TCAGACGTTGACGATGAAGG 57.652 50.000 10.87 0.00 43.02 3.46
5017 6376 2.166130 TTGACGATGAAGGCTCGCCA 62.166 55.000 11.02 0.00 39.71 5.69
5019 6378 2.284798 GACGATGAAGGCTCGCCAGA 62.285 60.000 11.02 0.00 39.71 3.86
5133 6492 3.548818 GCTTTGCAGTGTAGAAACTGGTG 60.549 47.826 6.48 0.00 46.34 4.17
5142 6501 5.183522 AGTGTAGAAACTGGTGCTAGTAGAC 59.816 44.000 0.00 0.00 0.00 2.59
5144 6503 2.492484 AGAAACTGGTGCTAGTAGACGG 59.508 50.000 0.00 0.00 0.00 4.79
5145 6504 0.531200 AACTGGTGCTAGTAGACGGC 59.469 55.000 0.00 0.00 0.00 5.68
5147 6506 2.017559 CTGGTGCTAGTAGACGGCCC 62.018 65.000 0.00 0.00 0.00 5.80
5148 6507 2.056223 GGTGCTAGTAGACGGCCCA 61.056 63.158 0.00 0.00 0.00 5.36
5149 6508 1.400530 GGTGCTAGTAGACGGCCCAT 61.401 60.000 0.00 0.00 0.00 4.00
5150 6509 0.249489 GTGCTAGTAGACGGCCCATG 60.249 60.000 0.00 0.00 0.00 3.66
5151 6510 0.686441 TGCTAGTAGACGGCCCATGT 60.686 55.000 0.00 0.00 0.00 3.21
5152 6511 0.249489 GCTAGTAGACGGCCCATGTG 60.249 60.000 0.00 0.00 0.00 3.21
5155 6514 3.387091 TAGACGGCCCATGTGCGT 61.387 61.111 0.00 0.00 0.00 5.24
5194 6904 6.126409 TGGGAGTTGTAACTGAACAAGATTT 58.874 36.000 1.35 0.00 39.92 2.17
5211 6921 6.434340 ACAAGATTTGGTCTGAAATAGAACCC 59.566 38.462 0.00 0.00 42.77 4.11
5220 6930 5.932883 GTCTGAAATAGAACCCGAAAACTCT 59.067 40.000 0.00 0.00 37.12 3.24
5225 6935 3.027974 AGAACCCGAAAACTCTCTTCG 57.972 47.619 0.00 0.00 44.11 3.79
5231 6944 2.657372 CCGAAAACTCTCTTCGTCTTCG 59.343 50.000 4.49 0.00 43.21 3.79
5234 6947 4.538917 GAAAACTCTCTTCGTCTTCGTCT 58.461 43.478 0.00 0.00 38.33 4.18
5235 6948 3.817148 AACTCTCTTCGTCTTCGTCTC 57.183 47.619 0.00 0.00 38.33 3.36
5237 6950 2.077627 CTCTCTTCGTCTTCGTCTCCA 58.922 52.381 0.00 0.00 38.33 3.86
5238 6951 2.680841 CTCTCTTCGTCTTCGTCTCCAT 59.319 50.000 0.00 0.00 38.33 3.41
5240 6953 2.680841 CTCTTCGTCTTCGTCTCCATCT 59.319 50.000 0.00 0.00 38.33 2.90
5241 6954 2.678836 TCTTCGTCTTCGTCTCCATCTC 59.321 50.000 0.00 0.00 38.33 2.75
5242 6955 1.380524 TCGTCTTCGTCTCCATCTCC 58.619 55.000 0.00 0.00 38.33 3.71
5243 6956 0.028242 CGTCTTCGTCTCCATCTCCG 59.972 60.000 0.00 0.00 0.00 4.63
5254 6967 5.051153 GTCTCCATCTCCGATTTTTACCTC 58.949 45.833 0.00 0.00 0.00 3.85
5267 6980 8.673711 CCGATTTTTACCTCTCAACATAAATGA 58.326 33.333 0.00 0.00 0.00 2.57
5275 6988 6.549364 ACCTCTCAACATAAATGAACAAACCA 59.451 34.615 0.00 0.00 0.00 3.67
5289 7002 2.200337 AACCAAAGCCTGGGTTCGC 61.200 57.895 12.13 0.00 46.07 4.70
5290 7003 2.282462 CCAAAGCCTGGGTTCGCT 60.282 61.111 12.13 0.00 42.17 4.93
5292 7005 1.286880 CAAAGCCTGGGTTCGCTTG 59.713 57.895 12.13 2.58 44.40 4.01
5293 7006 1.903404 AAAGCCTGGGTTCGCTTGG 60.903 57.895 12.13 0.00 44.40 3.61
5294 7007 2.640581 AAAGCCTGGGTTCGCTTGGT 62.641 55.000 12.13 0.00 44.40 3.67
5295 7008 3.056328 GCCTGGGTTCGCTTGGTC 61.056 66.667 0.00 0.00 0.00 4.02
5370 7188 4.678743 AAAGGGCCCTGGTTCGCC 62.679 66.667 29.50 4.06 44.92 5.54
5452 7270 3.007635 GTTTGGTCGGGTCCTAATTGAG 58.992 50.000 0.00 0.00 0.00 3.02
5474 7292 0.600782 TTCGCTGTGGACCGTTTACC 60.601 55.000 0.00 0.00 0.00 2.85
5488 7306 2.544277 CGTTTACCAGAGACCACGTTGA 60.544 50.000 0.00 0.00 0.00 3.18
5494 7312 2.550978 CAGAGACCACGTTGACTGTTT 58.449 47.619 0.00 0.00 0.00 2.83
5499 7317 5.465724 AGAGACCACGTTGACTGTTTATTTC 59.534 40.000 0.00 0.00 0.00 2.17
5505 7323 7.486870 ACCACGTTGACTGTTTATTTCTTTTTC 59.513 33.333 0.00 0.00 0.00 2.29
5506 7324 7.486551 CCACGTTGACTGTTTATTTCTTTTTCA 59.513 33.333 0.00 0.00 0.00 2.69
5507 7325 8.523464 CACGTTGACTGTTTATTTCTTTTTCAG 58.477 33.333 0.00 0.00 0.00 3.02
5708 7547 9.909644 ATTCATCATCTTGAAAAAGAAGTTCAG 57.090 29.630 5.50 0.00 38.98 3.02
5771 7610 5.805728 AGAAACAGTTGGTCATTACTAGGG 58.194 41.667 0.00 0.00 0.00 3.53
5823 7662 2.032302 AGTAGCTCTTAGACATGTCGCG 59.968 50.000 19.85 12.10 34.09 5.87
5850 7690 8.975663 TCTATATAACTAGATGATACCCGTGG 57.024 38.462 0.00 0.00 0.00 4.94
5864 7704 0.457851 CCGTGGGTTGCTGTGAAAAA 59.542 50.000 0.00 0.00 0.00 1.94
6007 8712 6.451064 AATTAAATAGAAAGCCTGTTCGGG 57.549 37.500 0.00 0.00 32.50 5.14
6028 8733 3.694566 GGTTGGGACATGGAGTATTTGAC 59.305 47.826 0.00 0.00 39.30 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 4.452455 GTCTTCACAAATGTCGACCATCTT 59.548 41.667 14.12 0.00 31.75 2.40
151 152 1.107538 CCCGCTCGACATCCTTCCTA 61.108 60.000 0.00 0.00 0.00 2.94
233 234 4.277672 GGTCATGATCTCCCACATTTGATG 59.722 45.833 0.00 0.00 0.00 3.07
292 293 0.835543 ACACTGGCTCTTCCTGCTCT 60.836 55.000 0.00 0.00 37.30 4.09
392 393 1.895798 TCGGATCTCCTGATGCATACC 59.104 52.381 0.00 0.00 40.46 2.73
399 400 0.558220 TGGGTCTCGGATCTCCTGAT 59.442 55.000 0.00 0.00 35.26 2.90
434 435 3.118519 TGCTCTATCAGATCTTGCTGCAA 60.119 43.478 15.16 15.16 35.86 4.08
458 459 0.980754 TCGCCCTTGAGCCTCCATAA 60.981 55.000 0.00 0.00 0.00 1.90
486 487 5.356882 AATCAAATTTCATGACACGTCGT 57.643 34.783 0.00 0.00 0.00 4.34
567 571 9.897744 TCATCACAGAAAATTCAAATACTTCAC 57.102 29.630 0.00 0.00 0.00 3.18
685 695 0.897863 TGAACCCCCATTTCGGCAAG 60.898 55.000 0.00 0.00 0.00 4.01
687 697 0.470080 TTTGAACCCCCATTTCGGCA 60.470 50.000 0.00 0.00 0.00 5.69
746 757 2.978010 CGGTTTTGCGCCCAGTCT 60.978 61.111 4.18 0.00 0.00 3.24
766 778 1.911269 TGACTAGTTGGGCGCTGGA 60.911 57.895 7.64 0.00 0.00 3.86
797 809 1.921243 GCGCATAAAAATCGCCCTTT 58.079 45.000 0.30 0.00 42.71 3.11
849 864 4.141528 CCCCTAGAGACGGTTAGAGAAGTA 60.142 50.000 0.00 0.00 0.00 2.24
853 868 2.485659 TCCCCTAGAGACGGTTAGAGA 58.514 52.381 0.00 0.00 0.00 3.10
854 869 3.073356 AGATCCCCTAGAGACGGTTAGAG 59.927 52.174 0.00 0.00 0.00 2.43
855 870 3.054576 AGATCCCCTAGAGACGGTTAGA 58.945 50.000 0.00 0.00 0.00 2.10
856 871 3.150767 CAGATCCCCTAGAGACGGTTAG 58.849 54.545 0.00 0.00 0.00 2.34
857 872 2.752154 GCAGATCCCCTAGAGACGGTTA 60.752 54.545 0.00 0.00 0.00 2.85
858 873 2.030045 GCAGATCCCCTAGAGACGGTT 61.030 57.143 0.00 0.00 0.00 4.44
859 874 0.468400 GCAGATCCCCTAGAGACGGT 60.468 60.000 0.00 0.00 0.00 4.83
860 875 0.178975 AGCAGATCCCCTAGAGACGG 60.179 60.000 0.00 0.00 0.00 4.79
861 876 2.570415 TAGCAGATCCCCTAGAGACG 57.430 55.000 0.00 0.00 0.00 4.18
862 877 5.816955 ATTTTAGCAGATCCCCTAGAGAC 57.183 43.478 0.00 0.00 0.00 3.36
863 878 5.455326 GCAATTTTAGCAGATCCCCTAGAGA 60.455 44.000 0.00 0.00 0.00 3.10
864 879 4.759183 GCAATTTTAGCAGATCCCCTAGAG 59.241 45.833 0.00 0.00 0.00 2.43
865 880 4.413520 AGCAATTTTAGCAGATCCCCTAGA 59.586 41.667 0.00 0.00 0.00 2.43
866 881 4.723309 AGCAATTTTAGCAGATCCCCTAG 58.277 43.478 0.00 0.00 0.00 3.02
867 882 4.796110 AGCAATTTTAGCAGATCCCCTA 57.204 40.909 0.00 0.00 0.00 3.53
868 883 3.677156 AGCAATTTTAGCAGATCCCCT 57.323 42.857 0.00 0.00 0.00 4.79
869 884 4.743057 AAAGCAATTTTAGCAGATCCCC 57.257 40.909 0.00 0.00 0.00 4.81
870 885 7.100458 TCTAAAAGCAATTTTAGCAGATCCC 57.900 36.000 13.23 0.00 41.74 3.85
871 886 8.462016 TCTTCTAAAAGCAATTTTAGCAGATCC 58.538 33.333 14.60 0.00 39.79 3.36
872 887 9.500864 CTCTTCTAAAAGCAATTTTAGCAGATC 57.499 33.333 17.22 0.00 41.92 2.75
873 888 9.236006 TCTCTTCTAAAAGCAATTTTAGCAGAT 57.764 29.630 17.22 0.00 41.92 2.90
874 889 8.621532 TCTCTTCTAAAAGCAATTTTAGCAGA 57.378 30.769 16.47 16.47 41.21 4.26
875 890 7.967303 CCTCTCTTCTAAAAGCAATTTTAGCAG 59.033 37.037 13.23 12.32 41.74 4.24
876 891 7.448469 ACCTCTCTTCTAAAAGCAATTTTAGCA 59.552 33.333 13.23 4.72 41.74 3.49
877 892 7.752686 CACCTCTCTTCTAAAAGCAATTTTAGC 59.247 37.037 13.23 0.00 41.74 3.09
878 893 8.239998 CCACCTCTCTTCTAAAAGCAATTTTAG 58.760 37.037 12.24 12.24 42.76 1.85
879 894 7.176690 CCCACCTCTCTTCTAAAAGCAATTTTA 59.823 37.037 0.00 0.00 32.27 1.52
880 895 6.015095 CCCACCTCTCTTCTAAAAGCAATTTT 60.015 38.462 0.00 0.00 32.27 1.82
881 896 5.478332 CCCACCTCTCTTCTAAAAGCAATTT 59.522 40.000 0.00 0.00 34.92 1.82
882 897 5.012893 CCCACCTCTCTTCTAAAAGCAATT 58.987 41.667 0.00 0.00 32.18 2.32
883 898 4.593956 CCCACCTCTCTTCTAAAAGCAAT 58.406 43.478 0.00 0.00 32.18 3.56
884 899 3.810743 GCCCACCTCTCTTCTAAAAGCAA 60.811 47.826 0.00 0.00 32.18 3.91
885 900 2.290323 GCCCACCTCTCTTCTAAAAGCA 60.290 50.000 0.00 0.00 32.18 3.91
886 901 2.360844 GCCCACCTCTCTTCTAAAAGC 58.639 52.381 0.00 0.00 32.18 3.51
887 902 2.305927 TGGCCCACCTCTCTTCTAAAAG 59.694 50.000 0.00 0.00 36.63 2.27
888 903 2.039879 GTGGCCCACCTCTCTTCTAAAA 59.960 50.000 1.17 0.00 36.63 1.52
889 904 1.628846 GTGGCCCACCTCTCTTCTAAA 59.371 52.381 1.17 0.00 36.63 1.85
890 905 1.276622 GTGGCCCACCTCTCTTCTAA 58.723 55.000 1.17 0.00 36.63 2.10
891 906 2.992476 GTGGCCCACCTCTCTTCTA 58.008 57.895 1.17 0.00 36.63 2.10
892 907 3.813150 GTGGCCCACCTCTCTTCT 58.187 61.111 1.17 0.00 36.63 2.85
941 956 5.103643 ACTCCAGTTTTCTTTTAGGGGTTCT 60.104 40.000 0.00 0.00 0.00 3.01
942 957 5.009710 CACTCCAGTTTTCTTTTAGGGGTTC 59.990 44.000 0.00 0.00 0.00 3.62
945 960 3.826729 CCACTCCAGTTTTCTTTTAGGGG 59.173 47.826 0.00 0.00 0.00 4.79
946 961 4.470602 ACCACTCCAGTTTTCTTTTAGGG 58.529 43.478 0.00 0.00 0.00 3.53
949 964 6.059484 CCACTACCACTCCAGTTTTCTTTTA 58.941 40.000 0.00 0.00 0.00 1.52
950 965 4.887655 CCACTACCACTCCAGTTTTCTTTT 59.112 41.667 0.00 0.00 0.00 2.27
954 970 2.152016 GCCACTACCACTCCAGTTTTC 58.848 52.381 0.00 0.00 0.00 2.29
1242 1259 3.006728 GTGGGGGTGTGGATCGGA 61.007 66.667 0.00 0.00 0.00 4.55
1246 1263 1.442886 AATGTGGTGGGGGTGTGGAT 61.443 55.000 0.00 0.00 0.00 3.41
1252 1269 0.783206 TGAATCAATGTGGTGGGGGT 59.217 50.000 0.00 0.00 0.00 4.95
1255 1272 2.099592 CGGATTGAATCAATGTGGTGGG 59.900 50.000 13.82 0.00 33.90 4.61
1260 1277 2.033801 GGGAGCGGATTGAATCAATGTG 59.966 50.000 13.82 6.45 33.90 3.21
1261 1278 2.301346 GGGAGCGGATTGAATCAATGT 58.699 47.619 13.82 0.00 33.90 2.71
1262 1279 2.300433 TGGGAGCGGATTGAATCAATG 58.700 47.619 13.82 1.05 33.90 2.82
1263 1280 2.734755 TGGGAGCGGATTGAATCAAT 57.265 45.000 8.39 8.39 36.72 2.57
1264 1281 2.734755 ATGGGAGCGGATTGAATCAA 57.265 45.000 7.56 0.00 0.00 2.57
1265 1282 2.575532 GAATGGGAGCGGATTGAATCA 58.424 47.619 7.56 0.00 0.00 2.57
1266 1283 1.882623 GGAATGGGAGCGGATTGAATC 59.117 52.381 0.00 0.00 0.00 2.52
1275 1292 0.108138 AGAGAAACGGAATGGGAGCG 60.108 55.000 0.00 0.00 0.00 5.03
1286 1303 2.829120 AGAAAGGGAGGAGAGAGAAACG 59.171 50.000 0.00 0.00 0.00 3.60
1379 1414 1.608590 ACAAGAACGAAACATGGCAGG 59.391 47.619 0.00 0.00 0.00 4.85
1380 1415 4.154015 TCATACAAGAACGAAACATGGCAG 59.846 41.667 0.00 0.00 0.00 4.85
1391 1426 5.605564 TTGGTCACAATCATACAAGAACG 57.394 39.130 0.00 0.00 0.00 3.95
1400 1437 3.507233 ACGAAATGCTTGGTCACAATCAT 59.493 39.130 0.00 0.00 43.21 2.45
1408 1447 2.433436 ACCCTAACGAAATGCTTGGTC 58.567 47.619 0.00 0.00 0.00 4.02
1412 1451 5.766174 TGTAGAAAACCCTAACGAAATGCTT 59.234 36.000 0.00 0.00 0.00 3.91
1416 1455 7.166167 AGATGTGTAGAAAACCCTAACGAAAT 58.834 34.615 0.00 0.00 0.00 2.17
1478 1531 7.510549 AAAAGTACATACATGATACATGCCC 57.489 36.000 0.00 0.00 0.00 5.36
1488 1541 8.322906 TCTCCAGAACAAAAAGTACATACATG 57.677 34.615 0.00 0.00 0.00 3.21
1495 1548 3.502595 GGCCTCTCCAGAACAAAAAGTAC 59.497 47.826 0.00 0.00 34.01 2.73
1499 1552 2.443255 AGAGGCCTCTCCAGAACAAAAA 59.557 45.455 30.40 0.00 40.83 1.94
1595 2025 5.876357 TCCACACCCTTGATATAAATAGCC 58.124 41.667 0.00 0.00 0.00 3.93
1604 2034 0.253044 GCAGCTCCACACCCTTGATA 59.747 55.000 0.00 0.00 0.00 2.15
1623 2053 8.702163 AAAAGATGGAACCTTTTATATTTGCG 57.298 30.769 0.00 0.00 40.74 4.85
1650 2080 7.722795 AAACAAGCGCCAACTAAAAATAAAT 57.277 28.000 2.29 0.00 0.00 1.40
1651 2081 7.541122 AAAACAAGCGCCAACTAAAAATAAA 57.459 28.000 2.29 0.00 0.00 1.40
1653 2083 6.363896 GCTAAAACAAGCGCCAACTAAAAATA 59.636 34.615 2.29 0.00 31.76 1.40
1654 2084 5.176774 GCTAAAACAAGCGCCAACTAAAAAT 59.823 36.000 2.29 0.00 31.76 1.82
1660 2093 0.313987 GGCTAAAACAAGCGCCAACT 59.686 50.000 2.29 0.00 43.74 3.16
1666 2099 4.092968 CAGTAGGTAAGGCTAAAACAAGCG 59.907 45.833 0.00 0.00 43.74 4.68
1754 2187 6.481976 CACGGTCAATATACTAGAATGGCAAA 59.518 38.462 0.00 0.00 0.00 3.68
1877 2310 8.428852 TGCACTAATGGTATAACATATCACAGT 58.571 33.333 3.06 0.58 0.00 3.55
1893 2560 4.460382 AGATTTTCTGGTGTGCACTAATGG 59.540 41.667 19.41 4.86 0.00 3.16
1946 2613 7.800767 AGCATTCGTCAATCATACATTCATAC 58.199 34.615 0.00 0.00 0.00 2.39
1947 2614 7.148755 CGAGCATTCGTCAATCATACATTCATA 60.149 37.037 0.00 0.00 41.84 2.15
1948 2615 6.347160 CGAGCATTCGTCAATCATACATTCAT 60.347 38.462 0.00 0.00 41.84 2.57
1949 2616 5.050837 CGAGCATTCGTCAATCATACATTCA 60.051 40.000 0.00 0.00 41.84 2.57
1950 2617 5.369187 CGAGCATTCGTCAATCATACATTC 58.631 41.667 0.00 0.00 41.84 2.67
1951 2618 5.334435 CGAGCATTCGTCAATCATACATT 57.666 39.130 0.00 0.00 41.84 2.71
1952 2619 4.979564 CGAGCATTCGTCAATCATACAT 57.020 40.909 0.00 0.00 41.84 2.29
1970 2637 5.971792 TCAGAATTTCTATAACAGACGCGAG 59.028 40.000 15.93 4.52 31.12 5.03
2157 2827 6.692681 CCCAAATCATCACGCTTATTGTTTAG 59.307 38.462 0.00 0.00 0.00 1.85
2170 2840 2.025887 ACAGAGGACCCCAAATCATCAC 60.026 50.000 0.00 0.00 29.24 3.06
2171 2841 2.025981 CACAGAGGACCCCAAATCATCA 60.026 50.000 0.00 0.00 29.24 3.07
2215 2885 7.308435 CCTGATCACACCTTCAAATTCTAAAC 58.692 38.462 0.00 0.00 0.00 2.01
2246 2916 5.077564 TGCAAAGAGTAGAAGTCTAGTCCA 58.922 41.667 16.29 7.37 45.56 4.02
2257 2927 7.282224 ACGGCAAATATTTATGCAAAGAGTAGA 59.718 33.333 12.87 0.00 44.32 2.59
2275 2945 2.778299 TGAGCTAAAGACACGGCAAAT 58.222 42.857 0.00 0.00 0.00 2.32
2281 2951 6.198029 CACTAGAATGATGAGCTAAAGACACG 59.802 42.308 0.00 0.00 0.00 4.49
2351 3021 3.438216 TGCCACAAGAATGAAGGATCA 57.562 42.857 0.00 0.00 40.57 2.92
2430 3620 9.378597 CAAGATGAAACATAGCAAAGATATTCG 57.621 33.333 0.00 0.00 0.00 3.34
2434 3624 7.772292 AGAGCAAGATGAAACATAGCAAAGATA 59.228 33.333 0.00 0.00 0.00 1.98
2443 3633 7.164122 AGTTGAGAAGAGCAAGATGAAACATA 58.836 34.615 0.00 0.00 0.00 2.29
2653 3924 4.722526 TCCAAGTTCAGAAATTGGAGGA 57.277 40.909 32.08 16.82 45.76 3.71
2861 4135 6.163476 ACACTTCGTTATAAGCTCACAATCA 58.837 36.000 0.00 0.00 0.00 2.57
2862 4136 6.648725 ACACTTCGTTATAAGCTCACAATC 57.351 37.500 0.00 0.00 0.00 2.67
2863 4137 6.426937 ACAACACTTCGTTATAAGCTCACAAT 59.573 34.615 0.00 0.00 35.52 2.71
2866 4140 5.404366 TGACAACACTTCGTTATAAGCTCAC 59.596 40.000 0.00 0.00 35.52 3.51
2978 4252 8.393366 CAACTACATGATCATCTTAAACCACAG 58.607 37.037 4.86 0.00 0.00 3.66
3030 4304 4.918588 ACAATAAGAATGAAAGGGACGGT 58.081 39.130 0.00 0.00 0.00 4.83
3033 4307 7.687941 TCTTGACAATAAGAATGAAAGGGAC 57.312 36.000 0.00 0.00 33.96 4.46
3099 4375 4.492646 AGATGATTCAACAAAAGGGGGTT 58.507 39.130 0.00 0.00 0.00 4.11
3136 4412 0.690192 TCCAGTTGCCGATTCCTGAA 59.310 50.000 0.00 0.00 0.00 3.02
3296 4580 8.877864 TTGATCTTTATAACAAACCACCTCAT 57.122 30.769 0.00 0.00 0.00 2.90
3465 4812 1.203237 TGCTATGTTGCTAGAGGGCA 58.797 50.000 0.00 0.00 40.74 5.36
3467 4814 2.486191 CCCTTGCTATGTTGCTAGAGGG 60.486 54.545 0.00 0.00 39.73 4.30
3480 4828 1.271379 GCTTGACCTTGTCCCTTGCTA 60.271 52.381 0.00 0.00 0.00 3.49
3533 4881 3.914426 AGGTGGACGAAGATAGCAATT 57.086 42.857 0.00 0.00 0.00 2.32
3546 4894 1.153429 GTGCACGGGATAGGTGGAC 60.153 63.158 0.00 1.00 46.70 4.02
3608 4956 6.753107 AAAATGGTACCACAGTAATAGCAC 57.247 37.500 19.09 0.00 0.00 4.40
3782 5130 3.699538 AGAAAAGGTCAAAGGTCAACACC 59.300 43.478 0.00 0.00 44.19 4.16
3802 5150 2.756760 GCAGCTGAAATCCATTTCCAGA 59.243 45.455 20.43 0.00 44.16 3.86
3843 5191 5.394773 GCTTCCTACAGTTTTGGGTGAAAAA 60.395 40.000 0.00 0.00 35.27 1.94
3845 5193 3.634910 GCTTCCTACAGTTTTGGGTGAAA 59.365 43.478 0.00 0.00 0.00 2.69
3846 5194 3.117663 AGCTTCCTACAGTTTTGGGTGAA 60.118 43.478 0.00 0.00 0.00 3.18
3847 5195 2.441750 AGCTTCCTACAGTTTTGGGTGA 59.558 45.455 0.00 0.00 0.00 4.02
3848 5196 2.814336 GAGCTTCCTACAGTTTTGGGTG 59.186 50.000 0.00 0.00 0.00 4.61
3849 5197 2.711547 AGAGCTTCCTACAGTTTTGGGT 59.288 45.455 0.00 0.00 0.00 4.51
3850 5198 3.425162 AGAGCTTCCTACAGTTTTGGG 57.575 47.619 0.00 0.00 0.00 4.12
3863 5211 5.966742 AAAATTACTGTGGGAAGAGCTTC 57.033 39.130 1.62 1.62 38.80 3.86
3864 5212 9.528489 TTATAAAAATTACTGTGGGAAGAGCTT 57.472 29.630 0.00 0.00 0.00 3.74
3865 5213 9.528489 TTTATAAAAATTACTGTGGGAAGAGCT 57.472 29.630 0.00 0.00 0.00 4.09
3921 5269 9.665719 ACAAGAAACAAACATCCAAATTTTACT 57.334 25.926 0.00 0.00 0.00 2.24
3922 5270 9.914923 GACAAGAAACAAACATCCAAATTTTAC 57.085 29.630 0.00 0.00 0.00 2.01
4002 5355 8.628280 TGAAATTTGTTTGATGTCAGTATGTGA 58.372 29.630 0.00 0.00 37.40 3.58
4013 5366 9.787626 CTCGAATTTTCTGAAATTTGTTTGATG 57.212 29.630 13.25 4.21 43.61 3.07
4016 5369 8.806634 TCACTCGAATTTTCTGAAATTTGTTTG 58.193 29.630 13.25 6.87 43.61 2.93
4017 5370 8.807581 GTCACTCGAATTTTCTGAAATTTGTTT 58.192 29.630 13.25 0.50 43.61 2.83
4039 5392 6.151144 AGTGGCAGAAAATATTACCAAGTCAC 59.849 38.462 0.00 0.00 0.00 3.67
4042 5395 7.888546 AGTAAGTGGCAGAAAATATTACCAAGT 59.111 33.333 0.00 0.00 0.00 3.16
4044 5397 8.644374 AAGTAAGTGGCAGAAAATATTACCAA 57.356 30.769 0.00 0.00 0.00 3.67
4047 5400 9.908152 AACAAAGTAAGTGGCAGAAAATATTAC 57.092 29.630 0.00 0.00 0.00 1.89
4105 5458 7.573283 GCAGACTCCTACAGTTTTAATTCAACC 60.573 40.741 0.00 0.00 34.41 3.77
4115 5468 6.072452 GCAAATAAAGCAGACTCCTACAGTTT 60.072 38.462 0.00 0.00 34.41 2.66
4164 5517 8.677148 TGCTAGAAATGTCACTAGTTTTCTTT 57.323 30.769 20.04 7.50 38.82 2.52
4167 5520 7.467623 CCATGCTAGAAATGTCACTAGTTTTC 58.532 38.462 8.97 8.97 38.51 2.29
4195 5548 5.248477 ACAAGGAGAGGTAAAGATAACTGCA 59.752 40.000 0.00 0.00 0.00 4.41
4208 5561 4.785346 AATATCATGCACAAGGAGAGGT 57.215 40.909 0.00 0.00 0.00 3.85
4209 5562 5.646793 CCATAATATCATGCACAAGGAGAGG 59.353 44.000 0.00 0.00 0.00 3.69
4211 5564 5.999600 CACCATAATATCATGCACAAGGAGA 59.000 40.000 0.00 0.00 0.00 3.71
4243 5596 7.559533 AGGCAAATAATGTGATTACCATGTACA 59.440 33.333 0.00 0.00 0.00 2.90
4244 5597 7.862372 CAGGCAAATAATGTGATTACCATGTAC 59.138 37.037 0.00 0.00 0.00 2.90
4245 5598 7.777440 TCAGGCAAATAATGTGATTACCATGTA 59.223 33.333 0.00 0.00 0.00 2.29
4246 5599 6.606796 TCAGGCAAATAATGTGATTACCATGT 59.393 34.615 0.00 0.00 0.00 3.21
4247 5600 6.919662 GTCAGGCAAATAATGTGATTACCATG 59.080 38.462 0.00 0.00 0.00 3.66
4250 5603 6.699575 AGTCAGGCAAATAATGTGATTACC 57.300 37.500 0.00 0.00 0.00 2.85
4251 5604 7.489113 CCAAAGTCAGGCAAATAATGTGATTAC 59.511 37.037 0.00 0.00 0.00 1.89
4252 5605 7.546358 CCAAAGTCAGGCAAATAATGTGATTA 58.454 34.615 0.00 0.00 0.00 1.75
4253 5606 6.400568 CCAAAGTCAGGCAAATAATGTGATT 58.599 36.000 0.00 0.00 0.00 2.57
4255 5608 5.389859 CCAAAGTCAGGCAAATAATGTGA 57.610 39.130 0.00 0.00 0.00 3.58
4271 5624 5.324409 TCACCTATTGAGAATTGCCAAAGT 58.676 37.500 0.00 0.00 0.00 2.66
4274 5627 6.211587 CAATCACCTATTGAGAATTGCCAA 57.788 37.500 0.00 0.00 46.81 4.52
4286 5639 6.464222 TCGACAGACTTTTCAATCACCTATT 58.536 36.000 0.00 0.00 0.00 1.73
4302 5655 0.861837 CAGCACCAACTTCGACAGAC 59.138 55.000 0.00 0.00 0.00 3.51
4305 5658 2.930887 GCTATCAGCACCAACTTCGACA 60.931 50.000 0.00 0.00 41.89 4.35
4323 5676 4.690748 CAGTTCTCTGGAAATTCGTTGCTA 59.309 41.667 0.00 0.00 37.97 3.49
4353 5706 2.105649 GGGCTTCTTCTCCCTAGAATGG 59.894 54.545 0.00 0.00 40.92 3.16
4418 5771 6.238320 GCTGTATGCACCAGAAAAGAATAGAG 60.238 42.308 17.14 0.00 42.31 2.43
4422 5775 4.708726 GCTGTATGCACCAGAAAAGAAT 57.291 40.909 17.14 0.00 42.31 2.40
4446 5801 8.132362 CACTCAATACTGATAGACAACTAGGAC 58.868 40.741 0.00 0.00 31.78 3.85
4450 5805 7.759886 GCAACACTCAATACTGATAGACAACTA 59.240 37.037 0.00 0.00 0.00 2.24
4451 5806 6.591834 GCAACACTCAATACTGATAGACAACT 59.408 38.462 0.00 0.00 0.00 3.16
4549 5904 4.457603 ACGCAAAATGAAAGCCATAGTACA 59.542 37.500 0.00 0.00 34.45 2.90
4558 5913 3.244976 ACATAGCACGCAAAATGAAAGC 58.755 40.909 6.17 0.00 0.00 3.51
4603 5958 4.704540 ACAAACAACACCATGAGTCAGAAA 59.295 37.500 0.00 0.00 0.00 2.52
4604 5959 4.269183 ACAAACAACACCATGAGTCAGAA 58.731 39.130 0.00 0.00 0.00 3.02
4614 5969 2.417239 GACGTCTGAACAAACAACACCA 59.583 45.455 8.70 0.00 0.00 4.17
4616 5971 2.536130 CCGACGTCTGAACAAACAACAC 60.536 50.000 14.70 0.00 0.00 3.32
4714 6070 0.178967 TGCCCACATTTTCCTCTGCA 60.179 50.000 0.00 0.00 0.00 4.41
4794 6150 1.205655 CTTCCTCTTCATCGACAGCCA 59.794 52.381 0.00 0.00 0.00 4.75
4795 6151 1.478510 TCTTCCTCTTCATCGACAGCC 59.521 52.381 0.00 0.00 0.00 4.85
4801 6157 5.840715 TCATCATCTTCTTCCTCTTCATCG 58.159 41.667 0.00 0.00 0.00 3.84
4816 6172 1.741706 CGCTTTGCTGGTTCATCATCT 59.258 47.619 0.00 0.00 0.00 2.90
4823 6182 0.110010 GCTCTTCGCTTTGCTGGTTC 60.110 55.000 0.00 0.00 35.14 3.62
4852 6211 1.004200 TTTCTTCGGTCGGGCCTTC 60.004 57.895 0.84 0.00 34.25 3.46
4860 6219 5.082251 AGTATTACCCACTTTCTTCGGTC 57.918 43.478 0.00 0.00 0.00 4.79
4930 6289 2.447765 CTCCCCCTATTGGCGGGA 60.448 66.667 17.26 17.26 44.96 5.14
4939 6298 4.153330 GGTCGCCTCCTCCCCCTA 62.153 72.222 0.00 0.00 0.00 3.53
4984 6343 0.776451 CGTCAACGTCTGAAGAACGG 59.224 55.000 0.00 0.00 35.73 4.44
4985 6344 1.750351 TCGTCAACGTCTGAAGAACG 58.250 50.000 11.58 4.90 39.27 3.95
4998 6357 1.447838 GGCGAGCCTTCATCGTCAA 60.448 57.895 6.90 0.00 43.98 3.18
5002 6361 1.880340 GTCTGGCGAGCCTTCATCG 60.880 63.158 15.75 0.00 43.00 3.84
5005 6364 1.004560 CTTGTCTGGCGAGCCTTCA 60.005 57.895 15.75 8.68 36.94 3.02
5006 6365 1.743252 CCTTGTCTGGCGAGCCTTC 60.743 63.158 15.75 6.29 36.94 3.46
5007 6366 1.768684 TTCCTTGTCTGGCGAGCCTT 61.769 55.000 15.75 0.00 36.94 4.35
5008 6367 2.177594 CTTCCTTGTCTGGCGAGCCT 62.178 60.000 15.75 0.00 36.94 4.58
5009 6368 1.743252 CTTCCTTGTCTGGCGAGCC 60.743 63.158 7.26 7.26 0.00 4.70
5010 6369 0.739112 CTCTTCCTTGTCTGGCGAGC 60.739 60.000 0.00 0.00 0.00 5.03
5017 6376 2.683768 ACCACAGTCTCTTCCTTGTCT 58.316 47.619 0.00 0.00 0.00 3.41
5019 6378 2.746472 GCAACCACAGTCTCTTCCTTGT 60.746 50.000 0.00 0.00 0.00 3.16
5133 6492 0.249489 CACATGGGCCGTCTACTAGC 60.249 60.000 0.00 0.00 0.00 3.42
5142 6501 4.769063 TACCACGCACATGGGCCG 62.769 66.667 15.85 12.29 44.81 6.13
5144 6503 3.508840 GCTACCACGCACATGGGC 61.509 66.667 10.81 10.81 44.81 5.36
5145 6504 2.108514 CAGCTACCACGCACATGGG 61.109 63.158 0.00 0.00 44.81 4.00
5147 6506 0.874390 AAACAGCTACCACGCACATG 59.126 50.000 0.00 0.00 0.00 3.21
5148 6507 2.346803 CTAAACAGCTACCACGCACAT 58.653 47.619 0.00 0.00 0.00 3.21
5149 6508 1.790755 CTAAACAGCTACCACGCACA 58.209 50.000 0.00 0.00 0.00 4.57
5150 6509 0.442699 GCTAAACAGCTACCACGCAC 59.557 55.000 0.00 0.00 0.00 5.34
5151 6510 0.320374 AGCTAAACAGCTACCACGCA 59.680 50.000 0.00 0.00 44.28 5.24
5152 6511 0.721718 CAGCTAAACAGCTACCACGC 59.278 55.000 0.00 0.00 44.30 5.34
5155 6514 1.555075 CTCCCAGCTAAACAGCTACCA 59.445 52.381 0.00 0.00 44.30 3.25
5158 6517 2.637872 ACAACTCCCAGCTAAACAGCTA 59.362 45.455 0.00 0.00 44.30 3.32
5194 6904 4.627284 TTTCGGGTTCTATTTCAGACCA 57.373 40.909 0.00 0.00 31.12 4.02
5220 6930 2.678836 GAGATGGAGACGAAGACGAAGA 59.321 50.000 0.00 0.00 42.66 2.87
5225 6935 1.380524 TCGGAGATGGAGACGAAGAC 58.619 55.000 0.00 0.00 31.79 3.01
5231 6944 5.024785 AGGTAAAAATCGGAGATGGAGAC 57.975 43.478 0.00 0.00 45.12 3.36
5234 6947 4.714802 TGAGAGGTAAAAATCGGAGATGGA 59.285 41.667 0.00 0.00 45.12 3.41
5235 6948 5.023533 TGAGAGGTAAAAATCGGAGATGG 57.976 43.478 0.00 0.00 45.12 3.51
5237 6950 6.049955 TGTTGAGAGGTAAAAATCGGAGAT 57.950 37.500 0.00 0.00 45.12 2.75
5238 6951 5.477607 TGTTGAGAGGTAAAAATCGGAGA 57.522 39.130 0.00 0.00 45.75 3.71
5240 6953 8.673711 CATTTATGTTGAGAGGTAAAAATCGGA 58.326 33.333 0.00 0.00 0.00 4.55
5241 6954 8.673711 TCATTTATGTTGAGAGGTAAAAATCGG 58.326 33.333 0.00 0.00 0.00 4.18
5254 6967 7.307337 GGCTTTGGTTTGTTCATTTATGTTGAG 60.307 37.037 0.00 0.00 0.00 3.02
5267 6980 1.484653 GAACCCAGGCTTTGGTTTGTT 59.515 47.619 16.93 3.77 44.70 2.83
5275 6988 1.903404 CCAAGCGAACCCAGGCTTT 60.903 57.895 0.00 0.00 46.71 3.51
5380 7198 2.640316 ACTGAGTGAACCAGGGAAAC 57.360 50.000 0.00 0.00 36.03 2.78
5426 7244 1.602605 GGACCCGACCAAACCAAGG 60.603 63.158 0.00 0.00 0.00 3.61
5452 7270 1.852067 AAACGGTCCACAGCGAATGC 61.852 55.000 0.00 0.00 46.86 3.56
5474 7292 2.225068 AACAGTCAACGTGGTCTCTG 57.775 50.000 0.00 0.00 0.00 3.35
5488 7306 9.803315 GAACTTCCTGAAAAAGAAATAAACAGT 57.197 29.630 0.00 0.00 0.00 3.55
5499 7317 8.876275 TTGAATTCATGAACTTCCTGAAAAAG 57.124 30.769 11.07 0.00 35.30 2.27
5616 7454 9.101655 CTTTTCCAGATTTGTGAACATTTTTCT 57.898 29.630 0.00 0.00 0.00 2.52
5708 7547 8.768957 ACGTAGGATAACTTTTCTAAAGTTCC 57.231 34.615 17.88 14.76 40.58 3.62
5717 7556 9.434559 GCATTTGATTACGTAGGATAACTTTTC 57.565 33.333 0.00 0.00 0.00 2.29
5796 7635 3.278668 TGTCTAAGAGCTACTACGGCT 57.721 47.619 0.00 0.00 43.26 5.52
5823 7662 8.561212 CACGGGTATCATCTAGTTATATAGAGC 58.439 40.741 0.00 0.00 35.32 4.09
5850 7690 2.287644 GCAACCATTTTTCACAGCAACC 59.712 45.455 0.00 0.00 0.00 3.77
6007 8712 3.694566 GGTCAAATACTCCATGTCCCAAC 59.305 47.826 0.00 0.00 0.00 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.