Multiple sequence alignment - TraesCS2B01G029900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G029900 chr2B 100.000 4188 0 0 1 4188 13734081 13738268 0.000000e+00 7734.0
1 TraesCS2B01G029900 chr2B 86.651 2090 226 26 1658 3719 13494316 13492252 0.000000e+00 2265.0
2 TraesCS2B01G029900 chr2B 92.885 1560 91 10 1 1555 13482461 13480917 0.000000e+00 2248.0
3 TraesCS2B01G029900 chr2B 75.128 1367 291 38 1788 3134 31423344 31422007 2.790000e-166 595.0
4 TraesCS2B01G029900 chr2B 81.583 695 121 3 862 1555 13495047 13494359 6.080000e-158 568.0
5 TraesCS2B01G029900 chr2B 80.362 718 121 16 846 1555 31424234 31423529 1.030000e-145 527.0
6 TraesCS2B01G029900 chr2D 86.019 2203 248 35 1658 3832 10024328 10022158 0.000000e+00 2307.0
7 TraesCS2B01G029900 chr2D 86.425 1790 202 23 1658 3422 10097493 10099266 0.000000e+00 1921.0
8 TraesCS2B01G029900 chr2D 92.867 715 46 1 842 1556 10025079 10024370 0.000000e+00 1033.0
9 TraesCS2B01G029900 chr2D 78.693 1056 178 31 1822 2864 36434653 36433632 0.000000e+00 660.0
10 TraesCS2B01G029900 chr2D 88.824 510 57 0 1045 1554 19462216 19462725 9.880000e-176 627.0
11 TraesCS2B01G029900 chr2D 80.515 816 137 14 745 1556 10096654 10097451 1.290000e-169 606.0
12 TraesCS2B01G029900 chr2D 75.167 1349 296 29 1788 3121 19580986 19582310 2.150000e-167 599.0
13 TraesCS2B01G029900 chr2D 95.545 202 8 1 3792 3993 10115797 10115997 5.220000e-84 322.0
14 TraesCS2B01G029900 chr2D 94.340 212 7 3 3819 4026 10014163 10013953 1.880000e-83 320.0
15 TraesCS2B01G029900 chr2D 92.453 53 4 0 4099 4151 9947936 9947884 4.490000e-10 76.8
16 TraesCS2B01G029900 chr2D 94.000 50 3 0 4099 4148 10117695 10117744 4.490000e-10 76.8
17 TraesCS2B01G029900 chr2A 87.272 1807 191 23 1658 3432 10198912 10200711 0.000000e+00 2026.0
18 TraesCS2B01G029900 chr2A 87.889 1156 116 17 449 1589 10373227 10374373 0.000000e+00 1338.0
19 TraesCS2B01G029900 chr2A 80.779 1566 239 51 1580 3135 10374325 10375838 0.000000e+00 1168.0
20 TraesCS2B01G029900 chr2A 85.029 688 83 15 871 1554 20502488 20503159 0.000000e+00 682.0
21 TraesCS2B01G029900 chr2A 81.077 724 127 7 834 1556 10198156 10198870 1.690000e-158 569.0
22 TraesCS2B01G029900 chr2A 79.533 728 124 18 1820 2540 9201811 9201102 2.910000e-136 496.0
23 TraesCS2B01G029900 chr2A 82.021 584 53 25 3437 3989 10200782 10201344 2.300000e-122 449.0
24 TraesCS2B01G029900 chr2A 78.750 240 44 5 2627 2864 9778973 9779207 2.020000e-33 154.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G029900 chr2B 13734081 13738268 4187 False 7734.000000 7734 100.000000 1 4188 1 chr2B.!!$F1 4187
1 TraesCS2B01G029900 chr2B 13480917 13482461 1544 True 2248.000000 2248 92.885000 1 1555 1 chr2B.!!$R1 1554
2 TraesCS2B01G029900 chr2B 13492252 13495047 2795 True 1416.500000 2265 84.117000 862 3719 2 chr2B.!!$R2 2857
3 TraesCS2B01G029900 chr2B 31422007 31424234 2227 True 561.000000 595 77.745000 846 3134 2 chr2B.!!$R3 2288
4 TraesCS2B01G029900 chr2D 10022158 10025079 2921 True 1670.000000 2307 89.443000 842 3832 2 chr2D.!!$R4 2990
5 TraesCS2B01G029900 chr2D 10096654 10099266 2612 False 1263.500000 1921 83.470000 745 3422 2 chr2D.!!$F3 2677
6 TraesCS2B01G029900 chr2D 36433632 36434653 1021 True 660.000000 660 78.693000 1822 2864 1 chr2D.!!$R3 1042
7 TraesCS2B01G029900 chr2D 19462216 19462725 509 False 627.000000 627 88.824000 1045 1554 1 chr2D.!!$F1 509
8 TraesCS2B01G029900 chr2D 19580986 19582310 1324 False 599.000000 599 75.167000 1788 3121 1 chr2D.!!$F2 1333
9 TraesCS2B01G029900 chr2A 10373227 10375838 2611 False 1253.000000 1338 84.334000 449 3135 2 chr2A.!!$F4 2686
10 TraesCS2B01G029900 chr2A 10198156 10201344 3188 False 1014.666667 2026 83.456667 834 3989 3 chr2A.!!$F3 3155
11 TraesCS2B01G029900 chr2A 20502488 20503159 671 False 682.000000 682 85.029000 871 1554 1 chr2A.!!$F2 683
12 TraesCS2B01G029900 chr2A 9201102 9201811 709 True 496.000000 496 79.533000 1820 2540 1 chr2A.!!$R1 720

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
36 37 0.736325 CACCTCGACCATCAACGACC 60.736 60.0 0.0 0.0 34.82 4.79 F
1384 1409 0.445436 CGTCACTTGCTGATCCTTGC 59.555 55.0 0.0 0.0 0.00 4.01 F
1697 1731 0.395724 TGCCAGACGAGCTCATCCTA 60.396 55.0 15.4 0.0 0.00 2.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1682 1716 1.028905 GCTGTAGGATGAGCTCGTCT 58.971 55.0 30.05 19.96 32.12 4.18 R
2768 2823 0.034059 ACAAGTTGTCGCCCAGAGAG 59.966 55.0 1.64 0.00 0.00 3.20 R
3564 3728 1.111116 ACACCAGCATGCAACAGCTT 61.111 50.0 21.98 0.00 39.50 3.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 1.771565 TTCCGTATCACCTCGACCAT 58.228 50.000 0.00 0.00 0.00 3.55
33 34 2.460918 GTATCACCTCGACCATCAACG 58.539 52.381 0.00 0.00 0.00 4.10
36 37 0.736325 CACCTCGACCATCAACGACC 60.736 60.000 0.00 0.00 34.82 4.79
50 51 3.517901 TCAACGACCTCTCCCATTTATGT 59.482 43.478 0.00 0.00 0.00 2.29
53 54 3.118738 ACGACCTCTCCCATTTATGTGAC 60.119 47.826 0.00 0.00 0.00 3.67
92 93 1.898472 ACCTCCAGGATAGATGCATCG 59.102 52.381 20.67 5.59 38.94 3.84
141 142 0.828022 TGCAGTAATGGTACTCCCCG 59.172 55.000 0.00 0.00 38.58 5.73
154 155 1.094785 CTCCCCGTTTGGCAACTATG 58.905 55.000 0.00 0.00 37.61 2.23
175 176 2.818751 AGTTTGAACCCCAGTGAACA 57.181 45.000 0.00 0.00 0.00 3.18
234 235 4.688511 TTTAACTTCGGTATGCGCAAAT 57.311 36.364 17.11 0.00 0.00 2.32
300 306 2.738013 ACTAAGTTACGACACCCTGC 57.262 50.000 0.00 0.00 0.00 4.85
321 327 7.709613 CCCTGCGTAGTACTTTACAGATAAATT 59.290 37.037 16.16 0.00 29.85 1.82
518 525 5.399301 CGAATTTGTGTTGTTGAAGATGGTC 59.601 40.000 0.00 0.00 0.00 4.02
557 564 7.264373 CCACATTGGTCAAGGATTATACTTC 57.736 40.000 2.27 0.00 31.35 3.01
685 692 7.210174 ACGTATGCATATGTTTGAGACTGTAT 58.790 34.615 23.14 0.00 0.00 2.29
758 766 5.913137 ATTTGTGTTTGAAAGTGGACAGA 57.087 34.783 0.00 0.00 0.00 3.41
769 777 4.955811 AAGTGGACAGATAGTTGACACA 57.044 40.909 0.00 0.00 34.43 3.72
796 809 4.633565 TGTTGGTTTGCATGGAAGAAAAAC 59.366 37.500 0.00 5.11 0.00 2.43
840 853 2.036604 TGACAGTGTACGAATTGCTCCA 59.963 45.455 0.00 0.00 0.00 3.86
923 944 0.889186 GGTGGTGTCATTCCGTGCTT 60.889 55.000 0.00 0.00 0.00 3.91
1384 1409 0.445436 CGTCACTTGCTGATCCTTGC 59.555 55.000 0.00 0.00 0.00 4.01
1476 1501 3.492656 GGCTGCCATCTTGATACTCGTTA 60.493 47.826 15.17 0.00 0.00 3.18
1518 1543 4.489771 GGACATGGGCACTCCGGG 62.490 72.222 0.00 0.00 38.76 5.73
1535 1560 2.639327 GGCGGCCAACTTCAGCATT 61.639 57.895 15.62 0.00 0.00 3.56
1547 1572 3.007723 ACTTCAGCATTCTTCAGAGCTCA 59.992 43.478 17.77 0.00 34.61 4.26
1548 1573 3.690475 TCAGCATTCTTCAGAGCTCAA 57.310 42.857 17.77 0.53 34.61 3.02
1568 1593 6.183360 GCTCAATCAAGGCAACAAAAGAAAAA 60.183 34.615 0.00 0.00 41.41 1.94
1588 1613 5.588958 AAAAGCAAAACAAAGAGCTCTCT 57.411 34.783 18.55 0.00 42.75 3.10
1589 1614 4.564940 AAGCAAAACAAAGAGCTCTCTG 57.435 40.909 18.55 17.00 40.36 3.35
1590 1615 3.813443 AGCAAAACAAAGAGCTCTCTGA 58.187 40.909 23.78 0.00 40.36 3.27
1600 1625 2.566279 AGAGCTCTCTGATGACAAGCAA 59.434 45.455 11.45 0.00 38.75 3.91
1601 1626 3.007723 AGAGCTCTCTGATGACAAGCAAA 59.992 43.478 11.45 0.00 38.75 3.68
1602 1627 3.336468 AGCTCTCTGATGACAAGCAAAG 58.664 45.455 0.00 0.00 35.42 2.77
1603 1628 3.007723 AGCTCTCTGATGACAAGCAAAGA 59.992 43.478 0.00 0.00 35.42 2.52
1604 1629 3.750130 GCTCTCTGATGACAAGCAAAGAA 59.250 43.478 0.00 0.00 33.21 2.52
1605 1630 4.142859 GCTCTCTGATGACAAGCAAAGAAG 60.143 45.833 0.00 0.00 33.21 2.85
1606 1631 5.219343 TCTCTGATGACAAGCAAAGAAGA 57.781 39.130 0.00 0.00 0.00 2.87
1607 1632 5.614308 TCTCTGATGACAAGCAAAGAAGAA 58.386 37.500 0.00 0.00 0.00 2.52
1608 1633 6.057533 TCTCTGATGACAAGCAAAGAAGAAA 58.942 36.000 0.00 0.00 0.00 2.52
1609 1634 6.017605 TCTCTGATGACAAGCAAAGAAGAAAC 60.018 38.462 0.00 0.00 0.00 2.78
1610 1635 5.009010 TCTGATGACAAGCAAAGAAGAAACC 59.991 40.000 0.00 0.00 0.00 3.27
1611 1636 4.644234 TGATGACAAGCAAAGAAGAAACCA 59.356 37.500 0.00 0.00 0.00 3.67
1612 1637 5.126869 TGATGACAAGCAAAGAAGAAACCAA 59.873 36.000 0.00 0.00 0.00 3.67
1613 1638 5.398603 TGACAAGCAAAGAAGAAACCAAA 57.601 34.783 0.00 0.00 0.00 3.28
1614 1639 5.976458 TGACAAGCAAAGAAGAAACCAAAT 58.024 33.333 0.00 0.00 0.00 2.32
1650 1675 1.975680 AGGTACCAAGACGTGACCAAT 59.024 47.619 15.94 0.00 32.28 3.16
1697 1731 0.395724 TGCCAGACGAGCTCATCCTA 60.396 55.000 15.40 0.00 0.00 2.94
1712 1746 1.186200 TCCTACAGCGTGCTCATTCT 58.814 50.000 0.00 0.00 0.00 2.40
1724 1758 6.094603 AGCGTGCTCATTCTCTTTTTCATATT 59.905 34.615 0.00 0.00 0.00 1.28
1765 1799 4.889995 TGATTCAGTGGTCGAGATAGATGT 59.110 41.667 0.00 0.00 0.00 3.06
1767 1801 2.872858 TCAGTGGTCGAGATAGATGTCG 59.127 50.000 2.82 2.82 43.91 4.35
1771 1805 1.068885 GGTCGAGATAGATGTCGCAGG 60.069 57.143 4.30 0.00 42.50 4.85
1804 1856 7.981142 AGTAAGGTAACAATCCAGGAACTTAA 58.019 34.615 0.00 0.00 35.00 1.85
1808 1860 7.699878 AGGTAACAATCCAGGAACTTAAGAAT 58.300 34.615 10.09 0.00 35.00 2.40
1813 1865 5.779241 ATCCAGGAACTTAAGAATGACCA 57.221 39.130 10.09 0.00 34.60 4.02
1865 1917 6.789457 TGGAACTCTCCCTCATGTATGATATT 59.211 38.462 0.00 0.00 41.64 1.28
1932 1984 2.805546 GTACCATCTCGCCGCTCA 59.194 61.111 0.00 0.00 0.00 4.26
1950 2002 1.693606 TCACTGTCATTGCCTCACTCA 59.306 47.619 0.00 0.00 0.00 3.41
1959 2011 2.636647 TGCCTCACTCATGTTGTTCA 57.363 45.000 0.00 0.00 0.00 3.18
1960 2012 2.497138 TGCCTCACTCATGTTGTTCAG 58.503 47.619 0.00 0.00 0.00 3.02
1987 2039 2.668279 GCAACAAAGATGGTTACAGCCG 60.668 50.000 0.00 0.00 32.15 5.52
1994 2046 2.000447 GATGGTTACAGCCGAGTTGAC 59.000 52.381 0.00 0.00 0.00 3.18
1995 2047 0.753867 TGGTTACAGCCGAGTTGACA 59.246 50.000 0.00 0.00 0.00 3.58
2054 2106 2.031508 CCTAGAGACGAAATCGCTCCTC 60.032 54.545 17.44 14.06 44.43 3.71
2124 2176 0.825010 GGATTGGCTCCGGCATTCAT 60.825 55.000 0.00 0.00 39.24 2.57
2135 2187 0.737219 GGCATTCATCTCTGTGCACC 59.263 55.000 15.69 0.00 39.27 5.01
2178 2230 1.867233 GCACACTTCTTTCTCTTCGCA 59.133 47.619 0.00 0.00 0.00 5.10
2211 2263 4.711399 TGGCAAGATGATTATGACAGGAG 58.289 43.478 0.00 0.00 0.00 3.69
2233 2285 0.842030 TCAAGGAGGTGGTCAGGCAT 60.842 55.000 0.00 0.00 0.00 4.40
2246 2298 2.052468 TCAGGCATCATAGGTCAGCAT 58.948 47.619 0.00 0.00 0.00 3.79
2311 2363 2.673368 GCCGACTCGAAAATCTGTTCAT 59.327 45.455 0.00 0.00 0.00 2.57
2313 2365 3.062639 CCGACTCGAAAATCTGTTCATGG 59.937 47.826 0.00 0.00 0.00 3.66
2318 2370 3.820467 TCGAAAATCTGTTCATGGTGCTT 59.180 39.130 0.00 0.00 0.00 3.91
2321 2373 2.885135 ATCTGTTCATGGTGCTTGGA 57.115 45.000 0.00 0.00 0.00 3.53
2373 2425 2.028484 GCACTGTCGTTGTCCCGA 59.972 61.111 0.00 0.00 33.79 5.14
2413 2465 2.034221 GAAGGTGGGCAGGTGGTC 59.966 66.667 0.00 0.00 0.00 4.02
2415 2467 3.133365 AAGGTGGGCAGGTGGTCAC 62.133 63.158 0.00 0.00 0.00 3.67
2416 2468 3.884774 GGTGGGCAGGTGGTCACA 61.885 66.667 3.40 0.00 32.29 3.58
2463 2518 2.954318 CTCAGGCATAAATGGGGTGAAG 59.046 50.000 0.00 0.00 0.00 3.02
2511 2566 4.724399 TGAGCTGTACAAGGAATTGGAAA 58.276 39.130 0.00 0.00 0.00 3.13
2519 2574 8.106247 TGTACAAGGAATTGGAAAAGTATCAC 57.894 34.615 0.00 0.00 0.00 3.06
2528 2583 4.963373 TGGAAAAGTATCACGGAGTTGAA 58.037 39.130 0.00 0.00 41.61 2.69
2581 2636 1.328680 CACCGATTTGATCCTCGCAAG 59.671 52.381 4.44 0.00 33.63 4.01
2584 2639 1.743772 CGATTTGATCCTCGCAAGGGT 60.744 52.381 0.00 0.00 43.56 4.34
2619 2674 2.424601 GGACATTTTGCAGCTGATAGCA 59.575 45.455 20.43 4.84 45.56 3.49
2623 2678 0.806868 TTTGCAGCTGATAGCAGTGC 59.193 50.000 20.43 21.10 45.56 4.40
2757 2812 6.659242 TCTGGACAAGATATGCGATGACTATA 59.341 38.462 0.00 0.00 0.00 1.31
2768 2823 3.365220 GCGATGACTATAATCTTGTCGGC 59.635 47.826 0.00 0.00 32.96 5.54
2831 2895 2.485302 CGGATTGCATCATCACAGGGTA 60.485 50.000 1.02 0.00 0.00 3.69
2949 3013 1.226018 GCACGCCGTATTGCTGTTC 60.226 57.895 0.00 0.00 35.74 3.18
3169 3233 4.385825 GGAAGCCATGTATAATTCGGTGA 58.614 43.478 0.00 0.00 0.00 4.02
3196 3274 3.006859 ACAAAGAAGGCACAATAAAGGGC 59.993 43.478 0.00 0.00 0.00 5.19
3258 3336 7.725251 TGTGCTCCAGAAATATTTTCACTTTT 58.275 30.769 1.43 0.00 0.00 2.27
3329 3407 7.457024 ACTTTAGTTGTTACCTTGTTTGTGT 57.543 32.000 0.00 0.00 0.00 3.72
3347 3425 8.375506 TGTTTGTGTCTTCTTATGGAGAATACT 58.624 33.333 9.19 0.00 43.23 2.12
3369 3448 1.523154 GGAGCACAAAACGCCCATCA 61.523 55.000 0.00 0.00 0.00 3.07
3432 3511 5.074804 GTTGGGTATCTGTACAGGGTTTTT 58.925 41.667 22.48 4.23 32.25 1.94
3434 3513 4.351407 TGGGTATCTGTACAGGGTTTTTGA 59.649 41.667 22.48 1.21 32.25 2.69
3435 3514 4.698780 GGGTATCTGTACAGGGTTTTTGAC 59.301 45.833 22.48 8.84 32.25 3.18
3438 3517 2.435069 TCTGTACAGGGTTTTTGACGGA 59.565 45.455 22.48 0.00 0.00 4.69
3439 3518 2.806244 CTGTACAGGGTTTTTGACGGAG 59.194 50.000 15.49 0.00 0.00 4.63
3459 3603 0.026285 CGATGATCCGCGACCAAAAC 59.974 55.000 8.23 0.00 0.00 2.43
3491 3636 4.528206 AGTTCAAAAATGGATTCAGGTCCC 59.472 41.667 0.00 0.00 37.48 4.46
3492 3637 4.402616 TCAAAAATGGATTCAGGTCCCT 57.597 40.909 0.00 0.00 37.48 4.20
3518 3663 1.269309 CGAGCTGTGGGCACTAGTATC 60.269 57.143 0.00 0.00 44.79 2.24
3520 3665 3.223435 GAGCTGTGGGCACTAGTATCTA 58.777 50.000 0.00 0.00 44.79 1.98
3555 3719 5.007430 GTGTGATTCATTGCTCTCCTGTATG 59.993 44.000 0.00 0.00 0.00 2.39
3561 3725 9.494271 GATTCATTGCTCTCCTGTATGTATTAA 57.506 33.333 0.00 0.00 0.00 1.40
3619 3789 4.999950 AGTACAGCATGAAAGAAACTGGAG 59.000 41.667 0.00 0.00 39.69 3.86
3638 3808 4.644685 TGGAGATCACAACAGTCATCGATA 59.355 41.667 0.00 0.00 0.00 2.92
3665 3835 0.524862 CACAGCAGCAGAAATCACCC 59.475 55.000 0.00 0.00 0.00 4.61
3688 3858 2.236893 GCCATTGATTTTGGGTCATGGT 59.763 45.455 0.00 0.00 34.66 3.55
3735 3905 6.356556 TGCACTCACAGGCAGTATATATTTT 58.643 36.000 0.00 0.00 34.58 1.82
3742 3912 9.853555 TCACAGGCAGTATATATTTTTGTTTTG 57.146 29.630 0.00 0.00 0.00 2.44
3758 3930 9.455847 TTTTTGTTTTGTTTTCTTTGACAATGG 57.544 25.926 1.60 0.00 35.85 3.16
3787 3959 8.486210 TGTGATCAGAATTATATATGTAGGCCC 58.514 37.037 0.00 0.00 0.00 5.80
3802 3974 0.672342 GGCCCAAATAGATGCAGCTG 59.328 55.000 16.28 10.11 0.00 4.24
3805 3977 1.679680 CCCAAATAGATGCAGCTGTGG 59.320 52.381 16.28 17.96 0.00 4.17
3850 4022 3.273434 TCTGCATGTTAGTTGAGCATCC 58.727 45.455 0.00 0.00 34.35 3.51
3861 4033 8.318412 TGTTAGTTGAGCATCCTTGATTACTAA 58.682 33.333 0.00 0.00 31.76 2.24
3863 4035 9.905713 TTAGTTGAGCATCCTTGATTACTAATT 57.094 29.630 0.00 0.00 30.48 1.40
3864 4036 8.443953 AGTTGAGCATCCTTGATTACTAATTC 57.556 34.615 0.00 0.00 0.00 2.17
3865 4037 8.270744 AGTTGAGCATCCTTGATTACTAATTCT 58.729 33.333 0.00 0.00 0.00 2.40
3866 4038 9.547753 GTTGAGCATCCTTGATTACTAATTCTA 57.452 33.333 0.00 0.00 0.00 2.10
3867 4039 9.547753 TTGAGCATCCTTGATTACTAATTCTAC 57.452 33.333 0.00 0.00 0.00 2.59
3868 4040 8.928448 TGAGCATCCTTGATTACTAATTCTACT 58.072 33.333 0.00 0.00 0.00 2.57
3869 4041 9.418045 GAGCATCCTTGATTACTAATTCTACTC 57.582 37.037 0.00 0.00 0.00 2.59
3871 4043 9.547753 GCATCCTTGATTACTAATTCTACTCAA 57.452 33.333 0.00 0.00 0.00 3.02
3879 4051 9.747293 GATTACTAATTCTACTCAACAGGGTAC 57.253 37.037 0.00 0.00 0.00 3.34
3880 4052 8.654485 TTACTAATTCTACTCAACAGGGTACA 57.346 34.615 0.00 0.00 0.00 2.90
3882 4054 7.556844 ACTAATTCTACTCAACAGGGTACATG 58.443 38.462 0.00 0.00 0.00 3.21
3894 4066 6.808321 ACAGGGTACATGTTATCACTATGT 57.192 37.500 2.30 2.79 38.48 2.29
3897 4069 7.343574 ACAGGGTACATGTTATCACTATGTGTA 59.656 37.037 2.30 0.00 36.52 2.90
3898 4070 8.367911 CAGGGTACATGTTATCACTATGTGTAT 58.632 37.037 2.30 0.00 36.52 2.29
3899 4071 8.585881 AGGGTACATGTTATCACTATGTGTATC 58.414 37.037 2.30 0.00 36.52 2.24
3900 4072 8.585881 GGGTACATGTTATCACTATGTGTATCT 58.414 37.037 2.30 0.00 36.52 1.98
3901 4073 9.627395 GGTACATGTTATCACTATGTGTATCTC 57.373 37.037 2.30 0.00 36.52 2.75
3907 4079 9.301897 TGTTATCACTATGTGTATCTCATAGCT 57.698 33.333 14.58 0.00 44.78 3.32
3933 4105 6.650390 TGCTTGCTTGAAATCCCTTTTATTTC 59.350 34.615 0.00 0.00 41.60 2.17
3937 4110 6.644592 TGCTTGAAATCCCTTTTATTTCGTTG 59.355 34.615 0.00 0.00 43.30 4.10
3946 4119 3.829886 TTTATTTCGTTGCAGCAGAGG 57.170 42.857 0.24 0.00 0.00 3.69
3965 4138 3.934684 GCGCATGCGAGGAAGCTC 61.935 66.667 41.98 18.75 42.83 4.09
3967 4140 3.267860 GCATGCGAGGAAGCTCGG 61.268 66.667 0.00 0.00 45.88 4.63
3968 4141 3.267860 CATGCGAGGAAGCTCGGC 61.268 66.667 0.00 0.00 45.88 5.54
3969 4142 3.774528 ATGCGAGGAAGCTCGGCA 61.775 61.111 0.00 0.00 45.88 5.69
3970 4143 3.729965 ATGCGAGGAAGCTCGGCAG 62.730 63.158 0.00 0.00 45.88 4.85
3998 4171 3.917760 GGTCCTCTCCGCCGATGG 61.918 72.222 0.00 0.00 0.00 3.51
3999 4172 4.593864 GTCCTCTCCGCCGATGGC 62.594 72.222 0.00 0.00 46.75 4.40
4020 4193 3.431922 CGTTCTCCGGCTTTATGTAGA 57.568 47.619 0.00 0.00 0.00 2.59
4021 4194 3.777478 CGTTCTCCGGCTTTATGTAGAA 58.223 45.455 0.00 0.00 0.00 2.10
4024 4197 4.119442 TCTCCGGCTTTATGTAGAACAC 57.881 45.455 0.00 0.00 0.00 3.32
4028 4201 2.351726 CGGCTTTATGTAGAACACCAGC 59.648 50.000 0.00 0.00 30.86 4.85
4042 4215 2.202987 CAGCGGCAGACCTGGATC 60.203 66.667 0.00 0.00 0.00 3.36
4043 4216 2.364842 AGCGGCAGACCTGGATCT 60.365 61.111 0.00 0.00 0.00 2.75
4044 4217 1.075970 AGCGGCAGACCTGGATCTA 60.076 57.895 0.00 0.00 0.00 1.98
4045 4218 1.112315 AGCGGCAGACCTGGATCTAG 61.112 60.000 0.00 0.00 0.00 2.43
4046 4219 1.365633 CGGCAGACCTGGATCTAGC 59.634 63.158 0.00 6.47 0.00 3.42
4047 4220 1.751563 GGCAGACCTGGATCTAGCC 59.248 63.158 0.00 11.15 36.45 3.93
4048 4221 0.762461 GGCAGACCTGGATCTAGCCT 60.762 60.000 19.61 0.00 38.66 4.58
4049 4222 0.392336 GCAGACCTGGATCTAGCCTG 59.608 60.000 16.83 16.83 0.00 4.85
4052 4225 3.155750 CCTGGATCTAGCCTGGCC 58.844 66.667 16.57 0.00 39.71 5.36
4053 4226 1.461075 CCTGGATCTAGCCTGGCCT 60.461 63.158 16.57 5.44 39.71 5.19
4054 4227 1.753470 CTGGATCTAGCCTGGCCTG 59.247 63.158 16.57 8.69 0.00 4.85
4055 4228 1.766625 CTGGATCTAGCCTGGCCTGG 61.767 65.000 23.89 23.89 0.00 4.45
4056 4229 1.460305 GGATCTAGCCTGGCCTGGA 60.460 63.158 31.43 11.54 0.00 3.86
4057 4230 1.056700 GGATCTAGCCTGGCCTGGAA 61.057 60.000 31.43 17.04 0.00 3.53
4058 4231 0.839946 GATCTAGCCTGGCCTGGAAA 59.160 55.000 31.43 16.69 0.00 3.13
4059 4232 1.212935 GATCTAGCCTGGCCTGGAAAA 59.787 52.381 31.43 14.27 0.00 2.29
4060 4233 1.072266 TCTAGCCTGGCCTGGAAAAA 58.928 50.000 31.43 11.07 0.00 1.94
4061 4234 1.177401 CTAGCCTGGCCTGGAAAAAC 58.823 55.000 31.43 13.49 0.00 2.43
4062 4235 0.480690 TAGCCTGGCCTGGAAAAACA 59.519 50.000 31.43 6.53 0.00 2.83
4063 4236 1.115326 AGCCTGGCCTGGAAAAACAC 61.115 55.000 31.43 12.05 0.00 3.32
4064 4237 1.398958 GCCTGGCCTGGAAAAACACA 61.399 55.000 31.43 0.00 0.00 3.72
4065 4238 0.389025 CCTGGCCTGGAAAAACACAC 59.611 55.000 23.89 0.00 0.00 3.82
4066 4239 1.402787 CTGGCCTGGAAAAACACACT 58.597 50.000 3.32 0.00 0.00 3.55
4067 4240 1.067516 CTGGCCTGGAAAAACACACTG 59.932 52.381 3.32 0.00 0.00 3.66
4068 4241 0.389025 GGCCTGGAAAAACACACTGG 59.611 55.000 0.00 0.00 0.00 4.00
4069 4242 0.249447 GCCTGGAAAAACACACTGGC 60.249 55.000 0.00 0.00 40.01 4.85
4070 4243 0.389025 CCTGGAAAAACACACTGGCC 59.611 55.000 0.00 0.00 0.00 5.36
4071 4244 1.110442 CTGGAAAAACACACTGGCCA 58.890 50.000 4.71 4.71 0.00 5.36
4072 4245 1.480137 CTGGAAAAACACACTGGCCAA 59.520 47.619 7.01 0.00 0.00 4.52
4073 4246 1.205893 TGGAAAAACACACTGGCCAAC 59.794 47.619 7.01 0.00 0.00 3.77
4074 4247 1.472552 GGAAAAACACACTGGCCAACC 60.473 52.381 7.01 0.00 0.00 3.77
4075 4248 0.174617 AAAAACACACTGGCCAACCG 59.825 50.000 7.01 0.00 39.70 4.44
4076 4249 2.291457 AAAACACACTGGCCAACCGC 62.291 55.000 7.01 0.00 39.70 5.68
4077 4250 4.497984 ACACACTGGCCAACCGCA 62.498 61.111 7.01 0.00 40.31 5.69
4078 4251 2.985282 CACACTGGCCAACCGCAT 60.985 61.111 7.01 0.00 40.31 4.73
4079 4252 2.203480 ACACTGGCCAACCGCATT 60.203 55.556 7.01 0.00 40.31 3.56
4080 4253 2.268076 ACACTGGCCAACCGCATTC 61.268 57.895 7.01 0.00 40.31 2.67
4081 4254 2.676471 ACTGGCCAACCGCATTCC 60.676 61.111 7.01 0.00 40.31 3.01
4082 4255 2.361610 CTGGCCAACCGCATTCCT 60.362 61.111 7.01 0.00 40.31 3.36
4083 4256 1.077787 CTGGCCAACCGCATTCCTA 60.078 57.895 7.01 0.00 40.31 2.94
4084 4257 1.077787 TGGCCAACCGCATTCCTAG 60.078 57.895 0.61 0.00 40.31 3.02
4085 4258 2.481471 GGCCAACCGCATTCCTAGC 61.481 63.158 0.00 0.00 40.31 3.42
4086 4259 1.748879 GCCAACCGCATTCCTAGCA 60.749 57.895 0.00 0.00 37.47 3.49
4087 4260 1.312371 GCCAACCGCATTCCTAGCAA 61.312 55.000 0.00 0.00 37.47 3.91
4088 4261 0.451783 CCAACCGCATTCCTAGCAAC 59.548 55.000 0.00 0.00 0.00 4.17
4089 4262 1.164411 CAACCGCATTCCTAGCAACA 58.836 50.000 0.00 0.00 0.00 3.33
4090 4263 1.745087 CAACCGCATTCCTAGCAACAT 59.255 47.619 0.00 0.00 0.00 2.71
4091 4264 1.668419 ACCGCATTCCTAGCAACATC 58.332 50.000 0.00 0.00 0.00 3.06
4092 4265 1.065491 ACCGCATTCCTAGCAACATCA 60.065 47.619 0.00 0.00 0.00 3.07
4093 4266 1.600957 CCGCATTCCTAGCAACATCAG 59.399 52.381 0.00 0.00 0.00 2.90
4094 4267 2.554142 CGCATTCCTAGCAACATCAGA 58.446 47.619 0.00 0.00 0.00 3.27
4095 4268 2.938451 CGCATTCCTAGCAACATCAGAA 59.062 45.455 0.00 0.00 0.00 3.02
4096 4269 3.002042 CGCATTCCTAGCAACATCAGAAG 59.998 47.826 0.00 0.00 0.00 2.85
4097 4270 3.314635 GCATTCCTAGCAACATCAGAAGG 59.685 47.826 0.00 0.00 0.00 3.46
4098 4271 4.774124 CATTCCTAGCAACATCAGAAGGA 58.226 43.478 0.00 0.00 0.00 3.36
4099 4272 5.374921 CATTCCTAGCAACATCAGAAGGAT 58.625 41.667 0.00 0.00 33.33 3.24
4100 4273 4.679373 TCCTAGCAACATCAGAAGGATC 57.321 45.455 0.00 0.00 32.57 3.36
4101 4274 4.293494 TCCTAGCAACATCAGAAGGATCT 58.707 43.478 0.00 0.00 32.57 2.75
4102 4275 5.458595 TCCTAGCAACATCAGAAGGATCTA 58.541 41.667 0.00 0.00 32.57 1.98
4103 4276 5.538053 TCCTAGCAACATCAGAAGGATCTAG 59.462 44.000 0.00 0.00 32.57 2.43
4104 4277 5.538053 CCTAGCAACATCAGAAGGATCTAGA 59.462 44.000 0.00 0.00 32.43 2.43
4105 4278 5.534207 AGCAACATCAGAAGGATCTAGAG 57.466 43.478 0.00 0.00 32.57 2.43
4106 4279 4.344679 AGCAACATCAGAAGGATCTAGAGG 59.655 45.833 0.00 0.00 32.57 3.69
4107 4280 4.100808 GCAACATCAGAAGGATCTAGAGGT 59.899 45.833 0.00 0.00 32.57 3.85
4108 4281 5.396213 GCAACATCAGAAGGATCTAGAGGTT 60.396 44.000 0.00 0.00 37.77 3.50
4109 4282 6.648192 CAACATCAGAAGGATCTAGAGGTTT 58.352 40.000 0.00 0.00 36.51 3.27
4110 4283 6.232581 ACATCAGAAGGATCTAGAGGTTTG 57.767 41.667 0.00 0.00 32.57 2.93
4111 4284 5.723887 ACATCAGAAGGATCTAGAGGTTTGT 59.276 40.000 0.00 0.00 32.57 2.83
4112 4285 6.214412 ACATCAGAAGGATCTAGAGGTTTGTT 59.786 38.462 0.00 0.00 32.57 2.83
4113 4286 6.688073 TCAGAAGGATCTAGAGGTTTGTTT 57.312 37.500 0.00 0.00 33.50 2.83
4114 4287 6.467677 TCAGAAGGATCTAGAGGTTTGTTTG 58.532 40.000 0.00 0.00 33.50 2.93
4115 4288 5.645497 CAGAAGGATCTAGAGGTTTGTTTGG 59.355 44.000 0.00 0.00 33.50 3.28
4116 4289 5.310857 AGAAGGATCTAGAGGTTTGTTTGGT 59.689 40.000 0.00 0.00 32.88 3.67
4117 4290 6.500751 AGAAGGATCTAGAGGTTTGTTTGGTA 59.499 38.462 0.00 0.00 32.88 3.25
4118 4291 6.301169 AGGATCTAGAGGTTTGTTTGGTAG 57.699 41.667 0.00 0.00 0.00 3.18
4119 4292 5.785940 AGGATCTAGAGGTTTGTTTGGTAGT 59.214 40.000 0.00 0.00 0.00 2.73
4120 4293 6.958192 AGGATCTAGAGGTTTGTTTGGTAGTA 59.042 38.462 0.00 0.00 0.00 1.82
4121 4294 7.040494 GGATCTAGAGGTTTGTTTGGTAGTAC 58.960 42.308 0.00 0.00 0.00 2.73
4122 4295 6.982160 TCTAGAGGTTTGTTTGGTAGTACA 57.018 37.500 2.06 0.00 0.00 2.90
4123 4296 6.989659 TCTAGAGGTTTGTTTGGTAGTACAG 58.010 40.000 2.06 0.00 0.00 2.74
4124 4297 4.386711 AGAGGTTTGTTTGGTAGTACAGC 58.613 43.478 2.06 0.00 0.00 4.40
4125 4298 4.131596 GAGGTTTGTTTGGTAGTACAGCA 58.868 43.478 2.06 0.00 0.00 4.41
4126 4299 3.881089 AGGTTTGTTTGGTAGTACAGCAC 59.119 43.478 2.06 0.00 33.42 4.40
4127 4300 3.004002 GGTTTGTTTGGTAGTACAGCACC 59.996 47.826 2.06 0.00 33.42 5.01
4128 4301 2.157834 TGTTTGGTAGTACAGCACCG 57.842 50.000 2.06 0.00 37.66 4.94
4129 4302 1.413445 TGTTTGGTAGTACAGCACCGT 59.587 47.619 2.06 0.00 37.66 4.83
4130 4303 2.627221 TGTTTGGTAGTACAGCACCGTA 59.373 45.455 2.06 0.00 37.66 4.02
4131 4304 3.248266 GTTTGGTAGTACAGCACCGTAG 58.752 50.000 2.06 0.00 37.66 3.51
4132 4305 2.205022 TGGTAGTACAGCACCGTAGT 57.795 50.000 2.06 0.00 37.66 2.73
4134 4307 1.133790 GGTAGTACAGCACCGTAGTGG 59.866 57.143 2.06 0.00 44.69 4.00
4135 4308 1.133790 GTAGTACAGCACCGTAGTGGG 59.866 57.143 0.00 0.00 44.69 4.61
4136 4309 1.447314 GTACAGCACCGTAGTGGGC 60.447 63.158 0.00 0.00 44.69 5.36
4137 4310 1.608336 TACAGCACCGTAGTGGGCT 60.608 57.895 0.00 0.00 44.69 5.19
4138 4311 1.601419 TACAGCACCGTAGTGGGCTC 61.601 60.000 0.00 0.00 44.69 4.70
4139 4312 2.283966 AGCACCGTAGTGGGCTCT 60.284 61.111 0.00 0.00 44.69 4.09
4140 4313 2.125512 GCACCGTAGTGGGCTCTG 60.126 66.667 0.00 0.00 44.69 3.35
4141 4314 2.125512 CACCGTAGTGGGCTCTGC 60.126 66.667 0.00 0.00 44.64 4.26
4142 4315 2.283966 ACCGTAGTGGGCTCTGCT 60.284 61.111 0.00 0.00 44.64 4.24
4143 4316 2.352032 ACCGTAGTGGGCTCTGCTC 61.352 63.158 0.00 0.00 44.64 4.26
4144 4317 2.351244 CCGTAGTGGGCTCTGCTCA 61.351 63.158 0.00 0.00 36.30 4.26
4145 4318 1.680522 CCGTAGTGGGCTCTGCTCAT 61.681 60.000 0.00 0.00 42.67 2.90
4146 4319 0.249238 CGTAGTGGGCTCTGCTCATC 60.249 60.000 0.00 0.00 42.67 2.92
4147 4320 1.118838 GTAGTGGGCTCTGCTCATCT 58.881 55.000 0.00 0.00 42.67 2.90
4148 4321 1.117994 TAGTGGGCTCTGCTCATCTG 58.882 55.000 0.00 0.00 42.67 2.90
4149 4322 1.818785 GTGGGCTCTGCTCATCTGC 60.819 63.158 0.00 0.00 42.67 4.26
4150 4323 2.203181 GGGCTCTGCTCATCTGCC 60.203 66.667 0.00 0.00 42.56 4.85
4151 4324 2.744243 GGGCTCTGCTCATCTGCCT 61.744 63.158 0.00 0.00 42.84 4.75
4152 4325 1.227615 GGCTCTGCTCATCTGCCTC 60.228 63.158 0.00 0.00 40.36 4.70
4153 4326 1.688269 GGCTCTGCTCATCTGCCTCT 61.688 60.000 0.00 0.00 40.36 3.69
4154 4327 0.531090 GCTCTGCTCATCTGCCTCTG 60.531 60.000 0.00 0.00 0.00 3.35
4155 4328 0.825410 CTCTGCTCATCTGCCTCTGT 59.175 55.000 0.00 0.00 0.00 3.41
4156 4329 1.207570 CTCTGCTCATCTGCCTCTGTT 59.792 52.381 0.00 0.00 0.00 3.16
4157 4330 1.627329 TCTGCTCATCTGCCTCTGTTT 59.373 47.619 0.00 0.00 0.00 2.83
4158 4331 2.039480 TCTGCTCATCTGCCTCTGTTTT 59.961 45.455 0.00 0.00 0.00 2.43
4159 4332 2.818432 CTGCTCATCTGCCTCTGTTTTT 59.182 45.455 0.00 0.00 0.00 1.94
4160 4333 2.816087 TGCTCATCTGCCTCTGTTTTTC 59.184 45.455 0.00 0.00 0.00 2.29
4161 4334 2.816087 GCTCATCTGCCTCTGTTTTTCA 59.184 45.455 0.00 0.00 0.00 2.69
4162 4335 3.365767 GCTCATCTGCCTCTGTTTTTCAC 60.366 47.826 0.00 0.00 0.00 3.18
4163 4336 4.070716 CTCATCTGCCTCTGTTTTTCACT 58.929 43.478 0.00 0.00 0.00 3.41
4164 4337 4.464008 TCATCTGCCTCTGTTTTTCACTT 58.536 39.130 0.00 0.00 0.00 3.16
4165 4338 4.889409 TCATCTGCCTCTGTTTTTCACTTT 59.111 37.500 0.00 0.00 0.00 2.66
4166 4339 5.360714 TCATCTGCCTCTGTTTTTCACTTTT 59.639 36.000 0.00 0.00 0.00 2.27
4167 4340 6.545666 TCATCTGCCTCTGTTTTTCACTTTTA 59.454 34.615 0.00 0.00 0.00 1.52
4168 4341 6.377327 TCTGCCTCTGTTTTTCACTTTTAG 57.623 37.500 0.00 0.00 0.00 1.85
4169 4342 5.885912 TCTGCCTCTGTTTTTCACTTTTAGT 59.114 36.000 0.00 0.00 0.00 2.24
4170 4343 6.377146 TCTGCCTCTGTTTTTCACTTTTAGTT 59.623 34.615 0.00 0.00 0.00 2.24
4171 4344 6.329496 TGCCTCTGTTTTTCACTTTTAGTTG 58.671 36.000 0.00 0.00 0.00 3.16
4172 4345 5.232202 GCCTCTGTTTTTCACTTTTAGTTGC 59.768 40.000 0.00 0.00 0.00 4.17
4173 4346 6.564328 CCTCTGTTTTTCACTTTTAGTTGCT 58.436 36.000 0.00 0.00 0.00 3.91
4174 4347 7.035612 CCTCTGTTTTTCACTTTTAGTTGCTT 58.964 34.615 0.00 0.00 0.00 3.91
4175 4348 7.220875 CCTCTGTTTTTCACTTTTAGTTGCTTC 59.779 37.037 0.00 0.00 0.00 3.86
4176 4349 7.598278 TCTGTTTTTCACTTTTAGTTGCTTCA 58.402 30.769 0.00 0.00 0.00 3.02
4177 4350 7.540745 TCTGTTTTTCACTTTTAGTTGCTTCAC 59.459 33.333 0.00 0.00 0.00 3.18
4178 4351 7.148641 TGTTTTTCACTTTTAGTTGCTTCACA 58.851 30.769 0.00 0.00 0.00 3.58
4179 4352 7.653713 TGTTTTTCACTTTTAGTTGCTTCACAA 59.346 29.630 0.00 0.00 35.33 3.33
4180 4353 8.491950 GTTTTTCACTTTTAGTTGCTTCACAAA 58.508 29.630 0.00 0.00 40.82 2.83
4181 4354 8.594881 TTTTCACTTTTAGTTGCTTCACAAAA 57.405 26.923 0.00 0.00 40.82 2.44
4182 4355 8.594881 TTTCACTTTTAGTTGCTTCACAAAAA 57.405 26.923 0.00 0.00 40.82 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 2.858344 GTCGAGGTGATACGGAAACATG 59.142 50.000 0.00 0.00 0.00 3.21
7 8 1.203052 TGGTCGAGGTGATACGGAAAC 59.797 52.381 0.00 0.00 0.00 2.78
28 29 3.517901 ACATAAATGGGAGAGGTCGTTGA 59.482 43.478 0.00 0.00 0.00 3.18
33 34 4.446371 CTGTCACATAAATGGGAGAGGTC 58.554 47.826 10.71 0.00 45.05 3.85
53 54 2.613977 GGTGACATCCCTGACAGAACTG 60.614 54.545 3.32 0.00 0.00 3.16
141 142 5.462068 GGTTCAAACTTCATAGTTGCCAAAC 59.538 40.000 0.00 0.00 43.74 2.93
154 155 3.020984 TGTTCACTGGGGTTCAAACTTC 58.979 45.455 0.00 0.00 0.00 3.01
215 216 4.033129 GTGTATTTGCGCATACCGAAGTTA 59.967 41.667 12.75 0.00 40.02 2.24
518 525 0.317160 TGTGGTAGCAGGTTGAGACG 59.683 55.000 0.00 0.00 0.00 4.18
660 667 5.419542 ACAGTCTCAAACATATGCATACGT 58.580 37.500 8.99 3.56 0.00 3.57
685 692 3.803021 GCATCAGATTGGGTGCACAAAAA 60.803 43.478 20.43 9.80 37.52 1.94
840 853 8.605325 ACACTAATACCTTAGAGTAACCACAT 57.395 34.615 0.00 0.00 37.11 3.21
923 944 1.908619 TGAGCTAGGACATGGCAAAGA 59.091 47.619 0.00 0.00 38.00 2.52
1476 1501 2.566724 CCCCATACTTTGCAACACCAAT 59.433 45.455 0.00 0.00 0.00 3.16
1518 1543 1.153958 GAATGCTGAAGTTGGCCGC 60.154 57.895 0.00 0.00 0.00 6.53
1535 1560 2.303890 TGCCTTGATTGAGCTCTGAAGA 59.696 45.455 16.19 0.00 0.00 2.87
1568 1593 4.202441 TCAGAGAGCTCTTTGTTTTGCTT 58.798 39.130 27.98 0.00 37.98 3.91
1570 1595 4.214971 TCATCAGAGAGCTCTTTGTTTTGC 59.785 41.667 27.98 9.97 37.98 3.68
1576 1601 3.371591 GCTTGTCATCAGAGAGCTCTTTG 59.628 47.826 24.71 24.71 37.98 2.77
1577 1602 3.007723 TGCTTGTCATCAGAGAGCTCTTT 59.992 43.478 19.36 9.80 37.98 2.52
1578 1603 2.566279 TGCTTGTCATCAGAGAGCTCTT 59.434 45.455 19.36 5.11 37.98 2.85
1579 1604 2.177734 TGCTTGTCATCAGAGAGCTCT 58.822 47.619 18.28 18.28 41.37 4.09
1580 1605 2.669300 TGCTTGTCATCAGAGAGCTC 57.331 50.000 5.27 5.27 35.95 4.09
1581 1606 3.007723 TCTTTGCTTGTCATCAGAGAGCT 59.992 43.478 0.00 0.00 35.95 4.09
1582 1607 3.332919 TCTTTGCTTGTCATCAGAGAGC 58.667 45.455 0.00 0.00 35.67 4.09
1583 1608 5.236282 TCTTCTTTGCTTGTCATCAGAGAG 58.764 41.667 0.00 0.00 0.00 3.20
1584 1609 5.219343 TCTTCTTTGCTTGTCATCAGAGA 57.781 39.130 0.00 0.00 0.00 3.10
1585 1610 5.936686 TTCTTCTTTGCTTGTCATCAGAG 57.063 39.130 0.00 0.00 0.00 3.35
1586 1611 5.009010 GGTTTCTTCTTTGCTTGTCATCAGA 59.991 40.000 0.00 0.00 0.00 3.27
1587 1612 5.218139 GGTTTCTTCTTTGCTTGTCATCAG 58.782 41.667 0.00 0.00 0.00 2.90
1588 1613 4.644234 TGGTTTCTTCTTTGCTTGTCATCA 59.356 37.500 0.00 0.00 0.00 3.07
1589 1614 5.186996 TGGTTTCTTCTTTGCTTGTCATC 57.813 39.130 0.00 0.00 0.00 2.92
1590 1615 5.596836 TTGGTTTCTTCTTTGCTTGTCAT 57.403 34.783 0.00 0.00 0.00 3.06
1600 1625 6.548993 AGAGCTCTTTGATTTGGTTTCTTCTT 59.451 34.615 11.45 0.00 0.00 2.52
1601 1626 6.067350 AGAGCTCTTTGATTTGGTTTCTTCT 58.933 36.000 11.45 0.00 0.00 2.85
1602 1627 6.206438 AGAGAGCTCTTTGATTTGGTTTCTTC 59.794 38.462 19.36 0.00 36.31 2.87
1603 1628 6.067350 AGAGAGCTCTTTGATTTGGTTTCTT 58.933 36.000 19.36 0.00 36.31 2.52
1604 1629 5.629125 AGAGAGCTCTTTGATTTGGTTTCT 58.371 37.500 19.36 2.40 36.31 2.52
1605 1630 5.471456 TGAGAGAGCTCTTTGATTTGGTTTC 59.529 40.000 19.36 0.00 40.61 2.78
1606 1631 5.380043 TGAGAGAGCTCTTTGATTTGGTTT 58.620 37.500 19.36 0.00 40.61 3.27
1607 1632 4.978099 TGAGAGAGCTCTTTGATTTGGTT 58.022 39.130 19.36 0.00 40.61 3.67
1608 1633 4.630644 TGAGAGAGCTCTTTGATTTGGT 57.369 40.909 19.36 0.00 40.61 3.67
1609 1634 4.395542 CCTTGAGAGAGCTCTTTGATTTGG 59.604 45.833 19.36 10.65 40.61 3.28
1610 1635 5.002516 ACCTTGAGAGAGCTCTTTGATTTG 58.997 41.667 19.36 7.03 40.61 2.32
1611 1636 5.240013 ACCTTGAGAGAGCTCTTTGATTT 57.760 39.130 19.36 0.00 40.61 2.17
1612 1637 4.906747 ACCTTGAGAGAGCTCTTTGATT 57.093 40.909 19.36 1.48 40.61 2.57
1613 1638 4.161377 GGTACCTTGAGAGAGCTCTTTGAT 59.839 45.833 19.36 4.48 40.61 2.57
1614 1639 3.511934 GGTACCTTGAGAGAGCTCTTTGA 59.488 47.826 19.36 2.83 40.61 2.69
1682 1716 1.028905 GCTGTAGGATGAGCTCGTCT 58.971 55.000 30.05 19.96 32.12 4.18
1697 1731 2.175878 AAAGAGAATGAGCACGCTGT 57.824 45.000 0.00 0.00 0.00 4.40
1712 1746 4.922692 CCACGCTTGCAAATATGAAAAAGA 59.077 37.500 0.00 0.00 0.00 2.52
1724 1758 1.164411 CAACTATCCCACGCTTGCAA 58.836 50.000 0.00 0.00 0.00 4.08
1771 1805 4.442052 GGATTGTTACCTTACTCGGGGTAC 60.442 50.000 0.00 0.00 37.75 3.34
1804 1856 5.573219 TCCACATTTTCTCATGGTCATTCT 58.427 37.500 0.00 0.00 33.67 2.40
1808 1860 3.561960 CCCTCCACATTTTCTCATGGTCA 60.562 47.826 0.00 0.00 33.67 4.02
1813 1865 4.275810 CATCACCCTCCACATTTTCTCAT 58.724 43.478 0.00 0.00 0.00 2.90
1865 1917 1.134340 ACGTTTGCCTTGGTGTACAGA 60.134 47.619 0.00 0.00 0.00 3.41
1932 1984 2.039480 ACATGAGTGAGGCAATGACAGT 59.961 45.455 0.00 0.00 0.00 3.55
1950 2002 3.715628 GTTGCTCAACCTGAACAACAT 57.284 42.857 14.83 0.00 46.79 2.71
1959 2011 2.949447 ACCATCTTTGTTGCTCAACCT 58.051 42.857 9.92 0.00 40.46 3.50
1960 2012 3.733443 AACCATCTTTGTTGCTCAACC 57.267 42.857 9.92 0.00 40.46 3.77
1987 2039 1.806542 ACGTGATGGCAATGTCAACTC 59.193 47.619 0.00 0.00 0.00 3.01
1994 2046 1.737838 AGGTGTACGTGATGGCAATG 58.262 50.000 0.00 0.00 0.00 2.82
1995 2047 2.083774 CAAGGTGTACGTGATGGCAAT 58.916 47.619 0.00 0.00 0.00 3.56
2054 2106 2.490217 CTCGACCCTAGTGCACCG 59.510 66.667 14.63 8.99 0.00 4.94
2124 2176 0.247460 CATCTTCCGGTGCACAGAGA 59.753 55.000 20.43 14.49 0.00 3.10
2135 2187 2.606308 CCGTAACCGATACCATCTTCCG 60.606 54.545 0.00 0.00 35.63 4.30
2178 2230 3.655211 CTTGCCAGGCCAGGACCT 61.655 66.667 20.27 0.00 42.30 3.85
2211 2263 1.298014 CTGACCACCTCCTTGAGCC 59.702 63.158 0.00 0.00 0.00 4.70
2233 2285 4.576053 GCAACATGTTATGCTGACCTATGA 59.424 41.667 11.53 0.00 39.46 2.15
2246 2298 1.334239 GCACGAAACCGCAACATGTTA 60.334 47.619 11.53 0.00 0.00 2.41
2299 2351 3.896888 TCCAAGCACCATGAACAGATTTT 59.103 39.130 0.00 0.00 0.00 1.82
2300 2352 3.256631 GTCCAAGCACCATGAACAGATTT 59.743 43.478 0.00 0.00 0.00 2.17
2311 2363 2.099652 CTCACCGAGTCCAAGCACCA 62.100 60.000 0.00 0.00 0.00 4.17
2313 2365 0.946221 CACTCACCGAGTCCAAGCAC 60.946 60.000 0.00 0.00 41.37 4.40
2318 2370 2.207229 CCACCACTCACCGAGTCCA 61.207 63.158 0.00 0.00 41.37 4.02
2321 2373 0.040646 TATCCCACCACTCACCGAGT 59.959 55.000 0.00 0.00 44.44 4.18
2373 2425 3.884693 TGTGCACACTTCATGACATTCTT 59.115 39.130 17.42 0.00 0.00 2.52
2413 2465 6.919662 GCCCATTGTGTTTATATCATCTTGTG 59.080 38.462 0.00 0.00 0.00 3.33
2415 2467 6.144854 CGCCCATTGTGTTTATATCATCTTG 58.855 40.000 0.00 0.00 0.00 3.02
2416 2468 5.827797 ACGCCCATTGTGTTTATATCATCTT 59.172 36.000 0.00 0.00 32.53 2.40
2463 2518 2.005451 CACTCTGTTATCCAGTGCTGC 58.995 52.381 0.00 0.00 42.19 5.25
2488 2543 4.574674 TCCAATTCCTTGTACAGCTCAT 57.425 40.909 0.00 0.00 0.00 2.90
2511 2566 5.160607 TGGAATTCAACTCCGTGATACTT 57.839 39.130 7.93 0.00 35.55 2.24
2519 2574 2.611292 GCTCTCATGGAATTCAACTCCG 59.389 50.000 7.93 0.00 35.55 4.63
2567 2622 0.322456 CCACCCTTGCGAGGATCAAA 60.322 55.000 22.68 0.00 46.74 2.69
2581 2636 1.968493 GTCCCTTTTCCTTTTCCACCC 59.032 52.381 0.00 0.00 0.00 4.61
2584 2639 5.679601 CAAAATGTCCCTTTTCCTTTTCCA 58.320 37.500 0.00 0.00 0.00 3.53
2619 2674 1.819229 CCCTGACTATCTGCGCACT 59.181 57.895 5.66 0.00 0.00 4.40
2623 2678 0.529337 CAGTGCCCTGACTATCTGCG 60.529 60.000 0.00 0.00 41.50 5.18
2757 2812 0.539051 CCCAGAGAGCCGACAAGATT 59.461 55.000 0.00 0.00 0.00 2.40
2768 2823 0.034059 ACAAGTTGTCGCCCAGAGAG 59.966 55.000 1.64 0.00 0.00 3.20
2782 2840 1.486310 TCTTGAGCACAGTCCACAAGT 59.514 47.619 2.03 0.00 38.94 3.16
2831 2895 3.267812 TCTCAAGCCCAGAAGATTCCAAT 59.732 43.478 0.00 0.00 0.00 3.16
2949 3013 9.787435 ATCTACTACCTCACTCTCAAGTATTAG 57.213 37.037 0.00 0.00 33.25 1.73
3169 3233 5.957842 TTATTGTGCCTTCTTTGTCGATT 57.042 34.783 0.00 0.00 0.00 3.34
3196 3274 1.338674 TGAAACTACGCATGGTCCTGG 60.339 52.381 0.00 0.00 0.00 4.45
3258 3336 9.967346 GAGATGCTTACAAGATACATACTACAA 57.033 33.333 0.00 0.00 0.00 2.41
3329 3407 7.092891 TGCTCCAAAGTATTCTCCATAAGAAGA 60.093 37.037 0.00 0.00 46.95 2.87
3347 3425 1.323271 TGGGCGTTTTGTGCTCCAAA 61.323 50.000 0.00 0.00 41.25 3.28
3369 3448 3.447586 TCATTGCTCCTAACTAAGACGCT 59.552 43.478 0.00 0.00 0.00 5.07
3372 3451 7.010923 CACTGAATCATTGCTCCTAACTAAGAC 59.989 40.741 0.00 0.00 0.00 3.01
3413 3492 4.390909 CGTCAAAAACCCTGTACAGATACC 59.609 45.833 24.68 1.54 0.00 2.73
3483 3628 1.613610 CTCGGACCTAGGGACCTGA 59.386 63.158 14.81 14.97 35.46 3.86
3491 3636 3.082579 GCCCACAGCTCGGACCTAG 62.083 68.421 0.00 0.00 38.99 3.02
3492 3637 3.075005 GCCCACAGCTCGGACCTA 61.075 66.667 0.00 0.00 38.99 3.08
3518 3663 7.854422 GCAATGAATCACACAACTGATATGTAG 59.146 37.037 0.00 0.00 30.27 2.74
3520 3665 6.376299 AGCAATGAATCACACAACTGATATGT 59.624 34.615 0.00 0.00 30.27 2.29
3555 3719 6.418819 CCAGCATGCAACAGCTTAATTAATAC 59.581 38.462 21.98 0.00 39.50 1.89
3561 3725 2.094390 CACCAGCATGCAACAGCTTAAT 60.094 45.455 21.98 0.00 39.50 1.40
3564 3728 1.111116 ACACCAGCATGCAACAGCTT 61.111 50.000 21.98 0.00 39.50 3.74
3619 3789 4.208047 GCACTATCGATGACTGTTGTGATC 59.792 45.833 8.54 0.00 34.23 2.92
3638 3808 1.597302 CTGCTGCTGTGAGTGCACT 60.597 57.895 21.88 21.88 45.36 4.40
3665 3835 3.527533 CATGACCCAAAATCAATGGCAG 58.472 45.455 0.00 0.00 36.58 4.85
3668 3838 4.556592 AACCATGACCCAAAATCAATGG 57.443 40.909 0.00 0.00 37.71 3.16
3735 3905 7.659390 AGACCATTGTCAAAGAAAACAAAACAA 59.341 29.630 0.00 0.00 44.33 2.83
3742 3912 5.890334 TCACAGACCATTGTCAAAGAAAAC 58.110 37.500 0.00 0.00 44.33 2.43
3787 3959 2.617308 CCTCCACAGCTGCATCTATTTG 59.383 50.000 15.27 1.23 0.00 2.32
3802 3974 2.331132 GCACAGCTCAAGCCTCCAC 61.331 63.158 0.00 0.00 43.38 4.02
3850 4022 9.319143 CCCTGTTGAGTAGAATTAGTAATCAAG 57.681 37.037 9.35 2.01 35.71 3.02
3861 4033 6.374417 AACATGTACCCTGTTGAGTAGAAT 57.626 37.500 0.00 0.00 35.57 2.40
3863 4035 6.666113 TGATAACATGTACCCTGTTGAGTAGA 59.334 38.462 16.89 1.66 37.41 2.59
3864 4036 6.757010 GTGATAACATGTACCCTGTTGAGTAG 59.243 42.308 16.89 0.00 37.41 2.57
3865 4037 6.439375 AGTGATAACATGTACCCTGTTGAGTA 59.561 38.462 16.89 2.50 37.41 2.59
3866 4038 5.248477 AGTGATAACATGTACCCTGTTGAGT 59.752 40.000 16.89 6.76 37.41 3.41
3867 4039 5.734720 AGTGATAACATGTACCCTGTTGAG 58.265 41.667 16.89 0.00 37.41 3.02
3868 4040 5.755409 AGTGATAACATGTACCCTGTTGA 57.245 39.130 16.89 5.94 37.41 3.18
3869 4041 7.011389 CACATAGTGATAACATGTACCCTGTTG 59.989 40.741 16.89 5.25 35.21 3.33
3871 4043 6.156256 ACACATAGTGATAACATGTACCCTGT 59.844 38.462 0.00 0.00 36.96 4.00
3872 4044 6.582636 ACACATAGTGATAACATGTACCCTG 58.417 40.000 0.00 0.00 36.96 4.45
3873 4045 6.808321 ACACATAGTGATAACATGTACCCT 57.192 37.500 0.00 0.00 36.96 4.34
3894 4066 4.412796 AGCAAGCAAGCTATGAGATACA 57.587 40.909 0.60 0.00 44.50 2.29
3897 4069 3.882444 TCAAGCAAGCAAGCTATGAGAT 58.118 40.909 3.20 0.00 45.89 2.75
3898 4070 3.339253 TCAAGCAAGCAAGCTATGAGA 57.661 42.857 3.20 0.00 45.89 3.27
3899 4071 4.430137 TTTCAAGCAAGCAAGCTATGAG 57.570 40.909 3.20 0.00 45.89 2.90
3900 4072 4.142315 GGATTTCAAGCAAGCAAGCTATGA 60.142 41.667 3.20 7.12 45.89 2.15
3901 4073 4.110482 GGATTTCAAGCAAGCAAGCTATG 58.890 43.478 3.20 5.17 45.89 2.23
3902 4074 3.131755 GGGATTTCAAGCAAGCAAGCTAT 59.868 43.478 3.20 0.00 45.89 2.97
3903 4075 2.493278 GGGATTTCAAGCAAGCAAGCTA 59.507 45.455 3.20 0.00 45.89 3.32
3904 4076 8.146124 TAAAAGGGATTTCAAGCAAGCAAGCT 62.146 38.462 0.00 0.00 38.28 3.74
3905 4077 1.274447 AGGGATTTCAAGCAAGCAAGC 59.726 47.619 0.00 0.00 0.00 4.01
3906 4078 3.672767 AAGGGATTTCAAGCAAGCAAG 57.327 42.857 0.00 0.00 0.00 4.01
3907 4079 4.420522 AAAAGGGATTTCAAGCAAGCAA 57.579 36.364 0.00 0.00 0.00 3.91
3981 4154 3.917760 CCATCGGCGGAGAGGACC 61.918 72.222 7.21 0.00 0.00 4.46
3982 4155 4.593864 GCCATCGGCGGAGAGGAC 62.594 72.222 16.62 6.87 39.62 3.85
4000 4173 3.431922 TCTACATAAAGCCGGAGAACG 57.568 47.619 5.05 0.00 43.80 3.95
4001 4174 4.329256 GTGTTCTACATAAAGCCGGAGAAC 59.671 45.833 17.16 17.16 41.92 3.01
4002 4175 4.501071 GTGTTCTACATAAAGCCGGAGAA 58.499 43.478 5.05 0.00 0.00 2.87
4003 4176 3.118884 GGTGTTCTACATAAAGCCGGAGA 60.119 47.826 5.05 0.00 0.00 3.71
4004 4177 3.195661 GGTGTTCTACATAAAGCCGGAG 58.804 50.000 5.05 0.00 0.00 4.63
4005 4178 2.568062 TGGTGTTCTACATAAAGCCGGA 59.432 45.455 5.05 0.00 0.00 5.14
4006 4179 2.936498 CTGGTGTTCTACATAAAGCCGG 59.064 50.000 0.00 0.00 0.00 6.13
4007 4180 2.351726 GCTGGTGTTCTACATAAAGCCG 59.648 50.000 0.00 0.00 29.82 5.52
4008 4181 2.351726 CGCTGGTGTTCTACATAAAGCC 59.648 50.000 0.00 0.00 31.31 4.35
4009 4182 2.351726 CCGCTGGTGTTCTACATAAAGC 59.648 50.000 0.00 0.00 31.54 3.51
4010 4183 2.351726 GCCGCTGGTGTTCTACATAAAG 59.648 50.000 0.00 0.00 0.00 1.85
4011 4184 2.289756 TGCCGCTGGTGTTCTACATAAA 60.290 45.455 0.00 0.00 0.00 1.40
4012 4185 1.276705 TGCCGCTGGTGTTCTACATAA 59.723 47.619 0.00 0.00 0.00 1.90
4013 4186 0.899019 TGCCGCTGGTGTTCTACATA 59.101 50.000 0.00 0.00 0.00 2.29
4014 4187 0.391661 CTGCCGCTGGTGTTCTACAT 60.392 55.000 0.00 0.00 0.00 2.29
4015 4188 1.005037 CTGCCGCTGGTGTTCTACA 60.005 57.895 0.00 0.00 0.00 2.74
4016 4189 1.014564 GTCTGCCGCTGGTGTTCTAC 61.015 60.000 0.00 0.00 0.00 2.59
4017 4190 1.292223 GTCTGCCGCTGGTGTTCTA 59.708 57.895 0.00 0.00 0.00 2.10
4018 4191 2.031163 GTCTGCCGCTGGTGTTCT 59.969 61.111 0.00 0.00 0.00 3.01
4019 4192 3.050275 GGTCTGCCGCTGGTGTTC 61.050 66.667 0.00 0.00 0.00 3.18
4020 4193 3.560251 AGGTCTGCCGCTGGTGTT 61.560 61.111 0.00 0.00 40.50 3.32
4021 4194 4.320456 CAGGTCTGCCGCTGGTGT 62.320 66.667 0.00 0.00 40.50 4.16
4024 4197 3.746949 GATCCAGGTCTGCCGCTGG 62.747 68.421 0.00 0.00 40.50 4.85
4028 4201 1.365633 GCTAGATCCAGGTCTGCCG 59.634 63.158 0.00 0.00 40.50 5.69
4039 4212 0.839946 TTTCCAGGCCAGGCTAGATC 59.160 55.000 12.43 0.00 0.00 2.75
4040 4213 1.298953 TTTTCCAGGCCAGGCTAGAT 58.701 50.000 12.43 0.00 0.00 1.98
4041 4214 1.072266 TTTTTCCAGGCCAGGCTAGA 58.928 50.000 12.43 2.74 0.00 2.43
4042 4215 1.177401 GTTTTTCCAGGCCAGGCTAG 58.823 55.000 12.43 3.88 0.00 3.42
4043 4216 0.480690 TGTTTTTCCAGGCCAGGCTA 59.519 50.000 12.43 0.00 0.00 3.93
4044 4217 1.115326 GTGTTTTTCCAGGCCAGGCT 61.115 55.000 12.43 0.00 0.00 4.58
4045 4218 1.367471 GTGTTTTTCCAGGCCAGGC 59.633 57.895 9.89 1.26 0.00 4.85
4046 4219 0.389025 GTGTGTTTTTCCAGGCCAGG 59.611 55.000 8.15 8.15 0.00 4.45
4047 4220 1.067516 CAGTGTGTTTTTCCAGGCCAG 59.932 52.381 5.01 0.00 0.00 4.85
4048 4221 1.110442 CAGTGTGTTTTTCCAGGCCA 58.890 50.000 5.01 0.00 0.00 5.36
4049 4222 0.389025 CCAGTGTGTTTTTCCAGGCC 59.611 55.000 0.00 0.00 0.00 5.19
4050 4223 0.249447 GCCAGTGTGTTTTTCCAGGC 60.249 55.000 0.00 0.00 0.00 4.85
4051 4224 0.389025 GGCCAGTGTGTTTTTCCAGG 59.611 55.000 0.00 0.00 0.00 4.45
4052 4225 1.110442 TGGCCAGTGTGTTTTTCCAG 58.890 50.000 0.00 0.00 0.00 3.86
4053 4226 1.205893 GTTGGCCAGTGTGTTTTTCCA 59.794 47.619 5.11 0.00 0.00 3.53
4054 4227 1.472552 GGTTGGCCAGTGTGTTTTTCC 60.473 52.381 5.11 0.00 34.09 3.13
4055 4228 1.801025 CGGTTGGCCAGTGTGTTTTTC 60.801 52.381 5.11 0.00 34.09 2.29
4056 4229 0.174617 CGGTTGGCCAGTGTGTTTTT 59.825 50.000 5.11 0.00 34.09 1.94
4057 4230 1.813192 CGGTTGGCCAGTGTGTTTT 59.187 52.632 5.11 0.00 34.09 2.43
4058 4231 2.781158 GCGGTTGGCCAGTGTGTTT 61.781 57.895 5.11 0.00 34.80 2.83
4059 4232 3.216292 GCGGTTGGCCAGTGTGTT 61.216 61.111 5.11 0.00 34.80 3.32
4060 4233 3.790416 ATGCGGTTGGCCAGTGTGT 62.790 57.895 5.11 0.00 42.61 3.72
4061 4234 2.476534 GAATGCGGTTGGCCAGTGTG 62.477 60.000 5.11 0.00 42.61 3.82
4062 4235 2.203480 AATGCGGTTGGCCAGTGT 60.203 55.556 5.11 0.00 42.61 3.55
4063 4236 2.568090 GAATGCGGTTGGCCAGTG 59.432 61.111 5.11 0.30 42.61 3.66
4064 4237 1.847798 TAGGAATGCGGTTGGCCAGT 61.848 55.000 5.11 0.00 42.61 4.00
4065 4238 1.077787 TAGGAATGCGGTTGGCCAG 60.078 57.895 5.11 0.00 42.61 4.85
4066 4239 1.077787 CTAGGAATGCGGTTGGCCA 60.078 57.895 0.00 0.00 42.61 5.36
4067 4240 2.481471 GCTAGGAATGCGGTTGGCC 61.481 63.158 0.00 0.00 42.61 5.36
4068 4241 1.312371 TTGCTAGGAATGCGGTTGGC 61.312 55.000 0.00 0.00 43.96 4.52
4069 4242 0.451783 GTTGCTAGGAATGCGGTTGG 59.548 55.000 0.00 0.00 0.00 3.77
4070 4243 1.164411 TGTTGCTAGGAATGCGGTTG 58.836 50.000 0.00 0.00 0.00 3.77
4071 4244 2.017049 GATGTTGCTAGGAATGCGGTT 58.983 47.619 0.00 0.00 0.00 4.44
4072 4245 1.065491 TGATGTTGCTAGGAATGCGGT 60.065 47.619 0.00 0.00 0.00 5.68
4073 4246 1.600957 CTGATGTTGCTAGGAATGCGG 59.399 52.381 0.00 0.00 0.00 5.69
4074 4247 2.554142 TCTGATGTTGCTAGGAATGCG 58.446 47.619 0.00 0.00 0.00 4.73
4075 4248 3.314635 CCTTCTGATGTTGCTAGGAATGC 59.685 47.826 0.00 0.00 0.00 3.56
4076 4249 4.774124 TCCTTCTGATGTTGCTAGGAATG 58.226 43.478 0.00 0.00 0.00 2.67
4077 4250 5.369110 AGATCCTTCTGATGTTGCTAGGAAT 59.631 40.000 0.00 0.00 35.58 3.01
4078 4251 4.718774 AGATCCTTCTGATGTTGCTAGGAA 59.281 41.667 0.00 0.00 35.58 3.36
4079 4252 4.293494 AGATCCTTCTGATGTTGCTAGGA 58.707 43.478 0.00 0.00 36.33 2.94
4080 4253 4.686191 AGATCCTTCTGATGTTGCTAGG 57.314 45.455 0.00 0.00 32.41 3.02
4081 4254 6.294675 CCTCTAGATCCTTCTGATGTTGCTAG 60.295 46.154 0.00 0.00 32.41 3.42
4082 4255 5.538053 CCTCTAGATCCTTCTGATGTTGCTA 59.462 44.000 0.00 0.00 32.41 3.49
4083 4256 4.344679 CCTCTAGATCCTTCTGATGTTGCT 59.655 45.833 0.00 0.00 32.41 3.91
4084 4257 4.100808 ACCTCTAGATCCTTCTGATGTTGC 59.899 45.833 0.00 0.00 32.41 4.17
4085 4258 5.867903 ACCTCTAGATCCTTCTGATGTTG 57.132 43.478 0.00 0.00 32.41 3.33
4086 4259 6.214412 ACAAACCTCTAGATCCTTCTGATGTT 59.786 38.462 0.00 0.00 32.41 2.71
4087 4260 5.723887 ACAAACCTCTAGATCCTTCTGATGT 59.276 40.000 0.00 0.00 32.41 3.06
4088 4261 6.232581 ACAAACCTCTAGATCCTTCTGATG 57.767 41.667 0.00 0.00 32.41 3.07
4089 4262 6.882768 AACAAACCTCTAGATCCTTCTGAT 57.117 37.500 0.00 0.00 36.01 2.90
4090 4263 6.467677 CAAACAAACCTCTAGATCCTTCTGA 58.532 40.000 0.00 0.00 33.17 3.27
4091 4264 5.645497 CCAAACAAACCTCTAGATCCTTCTG 59.355 44.000 0.00 0.00 33.17 3.02
4092 4265 5.310857 ACCAAACAAACCTCTAGATCCTTCT 59.689 40.000 0.00 0.00 35.90 2.85
4093 4266 5.561679 ACCAAACAAACCTCTAGATCCTTC 58.438 41.667 0.00 0.00 0.00 3.46
4094 4267 5.584551 ACCAAACAAACCTCTAGATCCTT 57.415 39.130 0.00 0.00 0.00 3.36
4095 4268 5.785940 ACTACCAAACAAACCTCTAGATCCT 59.214 40.000 0.00 0.00 0.00 3.24
4096 4269 6.051179 ACTACCAAACAAACCTCTAGATCC 57.949 41.667 0.00 0.00 0.00 3.36
4097 4270 7.609056 TGTACTACCAAACAAACCTCTAGATC 58.391 38.462 0.00 0.00 0.00 2.75
4098 4271 7.549147 TGTACTACCAAACAAACCTCTAGAT 57.451 36.000 0.00 0.00 0.00 1.98
4099 4272 6.517864 GCTGTACTACCAAACAAACCTCTAGA 60.518 42.308 0.00 0.00 0.00 2.43
4100 4273 5.638234 GCTGTACTACCAAACAAACCTCTAG 59.362 44.000 0.00 0.00 0.00 2.43
4101 4274 5.070714 TGCTGTACTACCAAACAAACCTCTA 59.929 40.000 0.00 0.00 0.00 2.43
4102 4275 4.141574 TGCTGTACTACCAAACAAACCTCT 60.142 41.667 0.00 0.00 0.00 3.69
4103 4276 4.024302 GTGCTGTACTACCAAACAAACCTC 60.024 45.833 0.00 0.00 0.00 3.85
4104 4277 3.881089 GTGCTGTACTACCAAACAAACCT 59.119 43.478 0.00 0.00 0.00 3.50
4105 4278 3.004002 GGTGCTGTACTACCAAACAAACC 59.996 47.826 8.90 0.00 36.94 3.27
4106 4279 3.303526 CGGTGCTGTACTACCAAACAAAC 60.304 47.826 12.71 0.00 36.76 2.93
4107 4280 2.873472 CGGTGCTGTACTACCAAACAAA 59.127 45.455 12.71 0.00 36.76 2.83
4108 4281 2.158928 ACGGTGCTGTACTACCAAACAA 60.159 45.455 12.71 0.00 36.76 2.83
4109 4282 1.413445 ACGGTGCTGTACTACCAAACA 59.587 47.619 12.71 0.00 36.76 2.83
4110 4283 2.159327 ACGGTGCTGTACTACCAAAC 57.841 50.000 12.71 0.00 36.76 2.93
4111 4284 2.892852 ACTACGGTGCTGTACTACCAAA 59.107 45.455 12.71 2.35 36.76 3.28
4112 4285 2.229543 CACTACGGTGCTGTACTACCAA 59.770 50.000 12.71 2.61 36.76 3.67
4113 4286 1.814394 CACTACGGTGCTGTACTACCA 59.186 52.381 12.71 0.00 36.76 3.25
4114 4287 1.133790 CCACTACGGTGCTGTACTACC 59.866 57.143 0.00 0.00 41.75 3.18
4115 4288 1.133790 CCCACTACGGTGCTGTACTAC 59.866 57.143 0.00 0.00 41.75 2.73
4116 4289 1.466856 CCCACTACGGTGCTGTACTA 58.533 55.000 0.00 0.00 41.75 1.82
4117 4290 1.885163 GCCCACTACGGTGCTGTACT 61.885 60.000 0.00 0.00 41.75 2.73
4118 4291 1.447314 GCCCACTACGGTGCTGTAC 60.447 63.158 0.00 0.00 41.75 2.90
4119 4292 1.601419 GAGCCCACTACGGTGCTGTA 61.601 60.000 0.00 0.00 40.26 2.74
4120 4293 2.923035 AGCCCACTACGGTGCTGT 60.923 61.111 0.00 0.00 41.75 4.40
4121 4294 2.125512 GAGCCCACTACGGTGCTG 60.126 66.667 0.00 0.00 40.26 4.41
4122 4295 2.283966 AGAGCCCACTACGGTGCT 60.284 61.111 0.00 0.00 42.14 4.40
4123 4296 2.125512 CAGAGCCCACTACGGTGC 60.126 66.667 0.00 0.00 41.75 5.01
4124 4297 2.125512 GCAGAGCCCACTACGGTG 60.126 66.667 0.00 0.00 42.65 4.94
4125 4298 2.283966 AGCAGAGCCCACTACGGT 60.284 61.111 0.00 0.00 0.00 4.83
4126 4299 1.680522 ATGAGCAGAGCCCACTACGG 61.681 60.000 0.00 0.00 0.00 4.02
4127 4300 0.249238 GATGAGCAGAGCCCACTACG 60.249 60.000 0.00 0.00 0.00 3.51
4128 4301 1.118838 AGATGAGCAGAGCCCACTAC 58.881 55.000 0.00 0.00 0.00 2.73
4129 4302 1.117994 CAGATGAGCAGAGCCCACTA 58.882 55.000 0.00 0.00 0.00 2.74
4130 4303 1.906253 CAGATGAGCAGAGCCCACT 59.094 57.895 0.00 0.00 0.00 4.00
4131 4304 1.818785 GCAGATGAGCAGAGCCCAC 60.819 63.158 0.00 0.00 0.00 4.61
4132 4305 2.588439 GCAGATGAGCAGAGCCCA 59.412 61.111 0.00 0.00 0.00 5.36
4133 4306 2.203181 GGCAGATGAGCAGAGCCC 60.203 66.667 0.00 0.00 39.42 5.19
4134 4307 1.227615 GAGGCAGATGAGCAGAGCC 60.228 63.158 0.00 0.00 45.54 4.70
4135 4308 0.531090 CAGAGGCAGATGAGCAGAGC 60.531 60.000 0.00 0.00 35.83 4.09
4136 4309 0.825410 ACAGAGGCAGATGAGCAGAG 59.175 55.000 0.00 0.00 35.83 3.35
4137 4310 1.273759 AACAGAGGCAGATGAGCAGA 58.726 50.000 0.00 0.00 35.83 4.26
4138 4311 2.110901 AAACAGAGGCAGATGAGCAG 57.889 50.000 0.00 0.00 35.83 4.24
4139 4312 2.574006 AAAACAGAGGCAGATGAGCA 57.426 45.000 0.00 0.00 35.83 4.26
4140 4313 2.816087 TGAAAAACAGAGGCAGATGAGC 59.184 45.455 0.00 0.00 0.00 4.26
4141 4314 4.070716 AGTGAAAAACAGAGGCAGATGAG 58.929 43.478 0.00 0.00 0.00 2.90
4142 4315 4.090761 AGTGAAAAACAGAGGCAGATGA 57.909 40.909 0.00 0.00 0.00 2.92
4143 4316 4.843220 AAGTGAAAAACAGAGGCAGATG 57.157 40.909 0.00 0.00 0.00 2.90
4144 4317 5.859205 AAAAGTGAAAAACAGAGGCAGAT 57.141 34.783 0.00 0.00 0.00 2.90
4145 4318 5.885912 ACTAAAAGTGAAAAACAGAGGCAGA 59.114 36.000 0.00 0.00 0.00 4.26
4146 4319 6.136541 ACTAAAAGTGAAAAACAGAGGCAG 57.863 37.500 0.00 0.00 0.00 4.85
4147 4320 6.329496 CAACTAAAAGTGAAAAACAGAGGCA 58.671 36.000 0.00 0.00 0.00 4.75
4148 4321 5.232202 GCAACTAAAAGTGAAAAACAGAGGC 59.768 40.000 0.00 0.00 0.00 4.70
4149 4322 6.564328 AGCAACTAAAAGTGAAAAACAGAGG 58.436 36.000 0.00 0.00 0.00 3.69
4150 4323 7.754924 TGAAGCAACTAAAAGTGAAAAACAGAG 59.245 33.333 0.00 0.00 0.00 3.35
4151 4324 7.540745 GTGAAGCAACTAAAAGTGAAAAACAGA 59.459 33.333 0.00 0.00 0.00 3.41
4152 4325 7.328249 TGTGAAGCAACTAAAAGTGAAAAACAG 59.672 33.333 0.00 0.00 0.00 3.16
4153 4326 7.148641 TGTGAAGCAACTAAAAGTGAAAAACA 58.851 30.769 0.00 0.00 0.00 2.83
4154 4327 7.575332 TGTGAAGCAACTAAAAGTGAAAAAC 57.425 32.000 0.00 0.00 0.00 2.43
4155 4328 8.594881 TTTGTGAAGCAACTAAAAGTGAAAAA 57.405 26.923 0.00 0.00 36.72 1.94
4156 4329 8.594881 TTTTGTGAAGCAACTAAAAGTGAAAA 57.405 26.923 0.00 0.00 36.72 2.29
4157 4330 8.594881 TTTTTGTGAAGCAACTAAAAGTGAAA 57.405 26.923 0.00 0.00 36.72 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.