Multiple sequence alignment - TraesCS2B01G028600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G028600 chr2B 100.000 3443 0 0 1 3443 13316104 13312662 0.000000e+00 6359.0
1 TraesCS2B01G028600 chr2B 95.534 1545 65 3 1081 2624 13180806 13179265 0.000000e+00 2468.0
2 TraesCS2B01G028600 chr2B 83.162 1170 187 8 1081 2245 138993213 138992049 0.000000e+00 1061.0
3 TraesCS2B01G028600 chr2B 93.126 611 21 6 478 1084 13181550 13180957 0.000000e+00 876.0
4 TraesCS2B01G028600 chr2B 89.775 489 32 7 1 486 13193535 13193062 8.170000e-171 610.0
5 TraesCS2B01G028600 chr2B 91.507 365 30 1 2261 2624 13220493 13220129 5.130000e-138 501.0
6 TraesCS2B01G028600 chr2B 91.233 365 31 1 2261 2624 13393062 13392698 2.390000e-136 496.0
7 TraesCS2B01G028600 chr2B 89.863 365 36 1 2261 2624 13155043 13154679 5.200000e-128 468.0
8 TraesCS2B01G028600 chr2B 82.126 207 33 3 1956 2160 11224234 11224030 1.270000e-39 174.0
9 TraesCS2B01G028600 chr2A 93.814 1180 62 7 1081 2256 9121920 9120748 0.000000e+00 1764.0
10 TraesCS2B01G028600 chr2A 88.314 1121 121 7 1081 2193 9847679 9848797 0.000000e+00 1336.0
11 TraesCS2B01G028600 chr2A 88.214 1120 124 5 1081 2193 9395202 9396320 0.000000e+00 1330.0
12 TraesCS2B01G028600 chr2A 84.664 952 140 3 1081 2029 86432032 86431084 0.000000e+00 944.0
13 TraesCS2B01G028600 chr2A 89.167 600 33 12 500 1084 9122653 9122071 0.000000e+00 719.0
14 TraesCS2B01G028600 chr2A 94.247 365 20 1 2261 2624 9125041 9124677 1.080000e-154 556.0
15 TraesCS2B01G028600 chr2A 90.385 52 4 1 2574 2624 9127325 9127274 2.220000e-07 67.6
16 TraesCS2B01G028600 chr2D 87.609 1146 133 7 1084 2223 9879677 9878535 0.000000e+00 1321.0
17 TraesCS2B01G028600 chr2D 82.735 1170 189 9 1081 2245 85929505 85928344 0.000000e+00 1029.0
18 TraesCS2B01G028600 chr2D 81.685 1163 199 11 1092 2245 8695751 8696908 0.000000e+00 955.0
19 TraesCS2B01G028600 chr2D 94.795 365 18 1 2261 2624 9874262 9873898 4.990000e-158 568.0
20 TraesCS2B01G028600 chr2D 82.000 300 31 9 406 704 9792309 9792032 2.070000e-57 233.0
21 TraesCS2B01G028600 chr2D 77.889 398 69 11 2 393 523635314 523635698 2.670000e-56 230.0
22 TraesCS2B01G028600 chr5D 94.017 468 20 3 2982 3442 545916547 545917013 0.000000e+00 702.0
23 TraesCS2B01G028600 chr5D 94.231 52 3 0 847 898 404501713 404501662 2.850000e-11 80.5
24 TraesCS2B01G028600 chr4A 92.949 468 24 2 2984 3442 623757938 623757471 0.000000e+00 673.0
25 TraesCS2B01G028600 chr1A 92.060 466 30 2 2984 3442 569773110 569772645 0.000000e+00 649.0
26 TraesCS2B01G028600 chr1B 87.415 588 24 19 2713 3287 624079569 624079019 6.270000e-177 630.0
27 TraesCS2B01G028600 chr1B 78.079 406 71 12 1 399 256908225 256908619 1.230000e-59 241.0
28 TraesCS2B01G028600 chr1B 81.419 296 45 10 48 337 641095112 641095403 2.070000e-57 233.0
29 TraesCS2B01G028600 chr3A 84.472 322 46 3 2261 2578 608112793 608113114 7.170000e-82 315.0
30 TraesCS2B01G028600 chr3A 83.333 162 24 3 2625 2784 7384175 7384015 2.770000e-31 147.0
31 TraesCS2B01G028600 chr1D 81.818 363 57 6 35 392 487272590 487272948 2.600000e-76 296.0
32 TraesCS2B01G028600 chr3B 81.215 362 64 3 2261 2618 618008065 618008426 4.350000e-74 289.0
33 TraesCS2B01G028600 chr3B 81.065 338 47 11 63 399 528648247 528647926 1.590000e-63 254.0
34 TraesCS2B01G028600 chr6D 82.635 334 45 8 1 332 33247025 33247347 2.020000e-72 283.0
35 TraesCS2B01G028600 chr4D 84.783 230 28 5 174 398 121072874 121073101 1.240000e-54 224.0
36 TraesCS2B01G028600 chr5A 75.500 400 78 15 5 391 24203973 24204365 9.820000e-41 178.0
37 TraesCS2B01G028600 chr6B 86.957 138 18 0 2261 2398 87330546 87330683 4.600000e-34 156.0
38 TraesCS2B01G028600 chr3D 80.769 156 27 3 2624 2777 563275489 563275335 6.040000e-23 119.0
39 TraesCS2B01G028600 chr5B 96.226 53 2 0 847 899 485912388 485912336 1.700000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G028600 chr2B 13312662 13316104 3442 True 6359.00 6359 100.00000 1 3443 1 chr2B.!!$R5 3442
1 TraesCS2B01G028600 chr2B 13179265 13181550 2285 True 1672.00 2468 94.33000 478 2624 2 chr2B.!!$R8 2146
2 TraesCS2B01G028600 chr2B 138992049 138993213 1164 True 1061.00 1061 83.16200 1081 2245 1 chr2B.!!$R7 1164
3 TraesCS2B01G028600 chr2A 9847679 9848797 1118 False 1336.00 1336 88.31400 1081 2193 1 chr2A.!!$F2 1112
4 TraesCS2B01G028600 chr2A 9395202 9396320 1118 False 1330.00 1330 88.21400 1081 2193 1 chr2A.!!$F1 1112
5 TraesCS2B01G028600 chr2A 86431084 86432032 948 True 944.00 944 84.66400 1081 2029 1 chr2A.!!$R1 948
6 TraesCS2B01G028600 chr2A 9120748 9127325 6577 True 776.65 1764 91.90325 500 2624 4 chr2A.!!$R2 2124
7 TraesCS2B01G028600 chr2D 9878535 9879677 1142 True 1321.00 1321 87.60900 1084 2223 1 chr2D.!!$R3 1139
8 TraesCS2B01G028600 chr2D 85928344 85929505 1161 True 1029.00 1029 82.73500 1081 2245 1 chr2D.!!$R4 1164
9 TraesCS2B01G028600 chr2D 8695751 8696908 1157 False 955.00 955 81.68500 1092 2245 1 chr2D.!!$F1 1153
10 TraesCS2B01G028600 chr1B 624079019 624079569 550 True 630.00 630 87.41500 2713 3287 1 chr1B.!!$R1 574

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
406 407 0.035739 GGGTACGTGAGGCAGGAAAA 59.964 55.0 0.00 0.0 0.00 2.29 F
791 4967 0.393537 GGAGACCAACATGAGGCCAG 60.394 60.0 5.01 0.0 0.00 4.85 F
1417 5765 0.598065 GTCACATGGTGCCTTGGAAC 59.402 55.0 0.00 0.0 32.98 3.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2174 6526 0.104671 AAGCATGTTTGGGTGCACAC 59.895 50.0 20.43 17.25 43.63 3.82 R
2344 6696 0.316204 CGGTGGTGTACGTCTCCTTT 59.684 55.0 0.00 0.00 0.00 3.11 R
3298 7663 0.037232 GGTCCTCGTCCAGTTCAAGG 60.037 60.0 0.00 0.00 0.00 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 4.776322 CCATCGCCACCGCCAAGA 62.776 66.667 0.00 0.00 0.00 3.02
31 32 2.203070 ATCGCCACCGCCAAGATC 60.203 61.111 0.00 0.00 0.00 2.75
32 33 2.735772 ATCGCCACCGCCAAGATCT 61.736 57.895 0.00 0.00 0.00 2.75
33 34 2.650813 ATCGCCACCGCCAAGATCTC 62.651 60.000 0.00 0.00 0.00 2.75
35 36 1.153086 GCCACCGCCAAGATCTCAT 60.153 57.895 0.00 0.00 0.00 2.90
36 37 1.162800 GCCACCGCCAAGATCTCATC 61.163 60.000 0.00 0.00 0.00 2.92
37 38 0.533755 CCACCGCCAAGATCTCATCC 60.534 60.000 0.00 0.00 0.00 3.51
38 39 0.877649 CACCGCCAAGATCTCATCCG 60.878 60.000 0.00 0.00 0.00 4.18
39 40 1.043116 ACCGCCAAGATCTCATCCGA 61.043 55.000 0.00 0.00 0.00 4.55
40 41 0.319383 CCGCCAAGATCTCATCCGAG 60.319 60.000 0.00 0.00 40.98 4.63
43 44 0.319383 CCAAGATCTCATCCGAGCCG 60.319 60.000 0.00 0.00 39.30 5.52
85 86 2.193248 GGTCATGCCCAGCCCTAC 59.807 66.667 0.00 0.00 0.00 3.18
86 87 2.193248 GTCATGCCCAGCCCTACC 59.807 66.667 0.00 0.00 0.00 3.18
89 90 2.774351 ATGCCCAGCCCTACCTCC 60.774 66.667 0.00 0.00 0.00 4.30
91 92 2.774351 GCCCAGCCCTACCTCCAT 60.774 66.667 0.00 0.00 0.00 3.41
93 94 2.150051 CCCAGCCCTACCTCCATCC 61.150 68.421 0.00 0.00 0.00 3.51
94 95 1.074167 CCAGCCCTACCTCCATCCT 60.074 63.158 0.00 0.00 0.00 3.24
96 97 0.105246 CAGCCCTACCTCCATCCTCT 60.105 60.000 0.00 0.00 0.00 3.69
99 100 1.124477 CCCTACCTCCATCCTCTGGC 61.124 65.000 0.00 0.00 45.52 4.85
100 101 1.124477 CCTACCTCCATCCTCTGGCC 61.124 65.000 0.00 0.00 45.52 5.36
101 102 0.399091 CTACCTCCATCCTCTGGCCA 60.399 60.000 4.71 4.71 45.52 5.36
102 103 0.691078 TACCTCCATCCTCTGGCCAC 60.691 60.000 0.00 0.00 45.52 5.01
121 122 2.427320 CCCATCCGATCGCCACAT 59.573 61.111 10.32 0.00 0.00 3.21
122 123 1.669115 CCCATCCGATCGCCACATC 60.669 63.158 10.32 0.00 0.00 3.06
123 124 1.069596 CCATCCGATCGCCACATCA 59.930 57.895 10.32 0.00 0.00 3.07
126 127 2.016393 ATCCGATCGCCACATCACGT 62.016 55.000 10.32 0.00 0.00 4.49
128 129 2.230940 CGATCGCCACATCACGTCC 61.231 63.158 0.26 0.00 0.00 4.79
129 130 1.153647 GATCGCCACATCACGTCCA 60.154 57.895 0.00 0.00 0.00 4.02
130 131 1.148157 GATCGCCACATCACGTCCAG 61.148 60.000 0.00 0.00 0.00 3.86
131 132 3.490759 CGCCACATCACGTCCAGC 61.491 66.667 0.00 0.00 0.00 4.85
132 133 2.358615 GCCACATCACGTCCAGCA 60.359 61.111 0.00 0.00 0.00 4.41
133 134 2.393768 GCCACATCACGTCCAGCAG 61.394 63.158 0.00 0.00 0.00 4.24
134 135 1.293179 CCACATCACGTCCAGCAGA 59.707 57.895 0.00 0.00 0.00 4.26
135 136 0.320683 CCACATCACGTCCAGCAGAA 60.321 55.000 0.00 0.00 0.00 3.02
137 138 0.392706 ACATCACGTCCAGCAGAACA 59.607 50.000 0.00 0.00 0.00 3.18
138 139 0.792640 CATCACGTCCAGCAGAACAC 59.207 55.000 0.00 0.00 0.00 3.32
140 141 1.961277 CACGTCCAGCAGAACACCC 60.961 63.158 0.00 0.00 0.00 4.61
142 143 3.050275 GTCCAGCAGAACACCCGC 61.050 66.667 0.00 0.00 0.00 6.13
201 202 4.335647 CTTGGACCAGGCTGGCGT 62.336 66.667 33.04 15.50 42.67 5.68
202 203 4.329545 TTGGACCAGGCTGGCGTC 62.330 66.667 33.04 22.91 42.67 5.19
205 206 4.459089 GACCAGGCTGGCGTCCTC 62.459 72.222 33.04 18.69 42.67 3.71
216 217 2.185350 CGTCCTCGCTGAAGCCAT 59.815 61.111 0.00 0.00 37.91 4.40
217 218 1.880340 CGTCCTCGCTGAAGCCATC 60.880 63.158 0.00 0.00 37.91 3.51
219 220 2.185350 CCTCGCTGAAGCCATCGT 59.815 61.111 0.00 0.00 37.91 3.73
220 221 1.880340 CCTCGCTGAAGCCATCGTC 60.880 63.158 0.00 0.00 37.91 4.20
221 222 1.880340 CTCGCTGAAGCCATCGTCC 60.880 63.158 0.00 0.00 37.91 4.79
225 226 4.812476 TGAAGCCATCGTCCCGCG 62.812 66.667 0.00 0.00 43.01 6.46
248 249 3.452786 CGGCCTCGAGCAAGGAGA 61.453 66.667 6.99 0.00 46.50 3.71
249 250 2.498726 GGCCTCGAGCAAGGAGAG 59.501 66.667 6.99 0.00 46.50 3.20
255 256 1.821753 CTCGAGCAAGGAGAGGAAAGA 59.178 52.381 0.00 0.00 33.27 2.52
256 257 2.430332 CTCGAGCAAGGAGAGGAAAGAT 59.570 50.000 0.00 0.00 33.27 2.40
266 267 3.320359 GGAAAGATCCCCGCCTCA 58.680 61.111 0.00 0.00 40.10 3.86
268 269 0.748367 GGAAAGATCCCCGCCTCAAC 60.748 60.000 0.00 0.00 40.10 3.18
269 270 0.748367 GAAAGATCCCCGCCTCAACC 60.748 60.000 0.00 0.00 0.00 3.77
270 271 1.208165 AAAGATCCCCGCCTCAACCT 61.208 55.000 0.00 0.00 0.00 3.50
271 272 0.326238 AAGATCCCCGCCTCAACCTA 60.326 55.000 0.00 0.00 0.00 3.08
272 273 1.049289 AGATCCCCGCCTCAACCTAC 61.049 60.000 0.00 0.00 0.00 3.18
273 274 2.365095 GATCCCCGCCTCAACCTACG 62.365 65.000 0.00 0.00 0.00 3.51
274 275 4.832608 CCCCGCCTCAACCTACGC 62.833 72.222 0.00 0.00 0.00 4.42
275 276 4.832608 CCCGCCTCAACCTACGCC 62.833 72.222 0.00 0.00 0.00 5.68
278 279 2.508663 GCCTCAACCTACGCCGAC 60.509 66.667 0.00 0.00 0.00 4.79
279 280 2.183555 CCTCAACCTACGCCGACC 59.816 66.667 0.00 0.00 0.00 4.79
280 281 2.642254 CCTCAACCTACGCCGACCA 61.642 63.158 0.00 0.00 0.00 4.02
283 284 0.968901 TCAACCTACGCCGACCAGAT 60.969 55.000 0.00 0.00 0.00 2.90
284 285 0.527817 CAACCTACGCCGACCAGATC 60.528 60.000 0.00 0.00 0.00 2.75
319 320 3.541713 GCGGCGAGGGAGGAATCT 61.542 66.667 12.98 0.00 0.00 2.40
321 322 2.825264 GGCGAGGGAGGAATCTGG 59.175 66.667 0.00 0.00 0.00 3.86
322 323 1.762460 GGCGAGGGAGGAATCTGGA 60.762 63.158 0.00 0.00 0.00 3.86
324 325 1.753368 GCGAGGGAGGAATCTGGAGG 61.753 65.000 0.00 0.00 0.00 4.30
327 328 0.267356 AGGGAGGAATCTGGAGGAGG 59.733 60.000 0.00 0.00 0.00 4.30
330 331 1.385206 AGGAATCTGGAGGAGGGCC 60.385 63.158 0.00 0.00 0.00 5.80
361 362 3.934962 GCGAGATCTGGCCCCCTC 61.935 72.222 18.18 0.18 0.00 4.30
363 364 3.237741 GAGATCTGGCCCCCTCGG 61.238 72.222 0.00 0.00 0.00 4.63
364 365 4.095400 AGATCTGGCCCCCTCGGT 62.095 66.667 0.00 0.00 0.00 4.69
365 366 3.551407 GATCTGGCCCCCTCGGTC 61.551 72.222 0.00 0.00 36.43 4.79
395 396 4.487412 GACGCGAGGGGGTACGTG 62.487 72.222 15.93 0.00 43.96 4.49
397 398 4.189188 CGCGAGGGGGTACGTGAG 62.189 72.222 0.00 0.00 41.53 3.51
398 399 3.834799 GCGAGGGGGTACGTGAGG 61.835 72.222 0.00 0.00 0.00 3.86
399 400 3.834799 CGAGGGGGTACGTGAGGC 61.835 72.222 0.00 0.00 0.00 4.70
400 401 2.682494 GAGGGGGTACGTGAGGCA 60.682 66.667 0.00 0.00 0.00 4.75
401 402 2.683933 AGGGGGTACGTGAGGCAG 60.684 66.667 0.00 0.00 0.00 4.85
402 403 3.782443 GGGGGTACGTGAGGCAGG 61.782 72.222 0.00 0.00 0.00 4.85
404 405 2.288025 GGGGTACGTGAGGCAGGAA 61.288 63.158 0.00 0.00 0.00 3.36
406 407 0.035739 GGGTACGTGAGGCAGGAAAA 59.964 55.000 0.00 0.00 0.00 2.29
407 408 1.543871 GGGTACGTGAGGCAGGAAAAA 60.544 52.381 0.00 0.00 0.00 1.94
425 426 4.316205 AAAAACGTAAAAGGAGCCCAAG 57.684 40.909 0.00 0.00 0.00 3.61
426 427 1.905637 AACGTAAAAGGAGCCCAAGG 58.094 50.000 0.00 0.00 0.00 3.61
444 445 7.639113 CCCAAGGCAATACAAAGATAAGTAA 57.361 36.000 0.00 0.00 0.00 2.24
445 446 8.062065 CCCAAGGCAATACAAAGATAAGTAAA 57.938 34.615 0.00 0.00 0.00 2.01
446 447 8.695456 CCCAAGGCAATACAAAGATAAGTAAAT 58.305 33.333 0.00 0.00 0.00 1.40
467 468 9.210426 GTAAATATACGTGCAAAATTCTCTGTG 57.790 33.333 0.00 0.00 0.00 3.66
470 471 2.948979 ACGTGCAAAATTCTCTGTGGAA 59.051 40.909 0.00 0.00 0.00 3.53
471 472 3.569701 ACGTGCAAAATTCTCTGTGGAAT 59.430 39.130 0.00 0.00 37.51 3.01
472 473 3.916172 CGTGCAAAATTCTCTGTGGAATG 59.084 43.478 0.00 0.00 36.24 2.67
474 475 5.620654 CGTGCAAAATTCTCTGTGGAATGAT 60.621 40.000 0.00 0.00 36.24 2.45
475 476 5.575606 GTGCAAAATTCTCTGTGGAATGATG 59.424 40.000 0.00 0.00 36.24 3.07
616 4790 0.953960 GTTTAGACACGTGCCCCTGG 60.954 60.000 17.22 0.00 0.00 4.45
617 4791 1.122632 TTTAGACACGTGCCCCTGGA 61.123 55.000 17.22 1.76 0.00 3.86
618 4792 1.541310 TTAGACACGTGCCCCTGGAG 61.541 60.000 17.22 0.00 0.00 3.86
619 4793 2.435120 TAGACACGTGCCCCTGGAGA 62.435 60.000 17.22 0.00 0.00 3.71
620 4794 3.591254 GACACGTGCCCCTGGAGAC 62.591 68.421 17.22 0.00 0.00 3.36
621 4795 3.314331 CACGTGCCCCTGGAGACT 61.314 66.667 0.82 0.00 0.00 3.24
622 4796 2.526873 ACGTGCCCCTGGAGACTT 60.527 61.111 0.00 0.00 0.00 3.01
623 4797 2.266055 CGTGCCCCTGGAGACTTC 59.734 66.667 0.00 0.00 0.00 3.01
624 4798 2.286523 CGTGCCCCTGGAGACTTCT 61.287 63.158 0.00 0.00 0.00 2.85
625 4799 1.298014 GTGCCCCTGGAGACTTCTG 59.702 63.158 0.00 0.00 0.00 3.02
626 4800 2.270527 GCCCCTGGAGACTTCTGC 59.729 66.667 0.00 0.00 34.66 4.26
627 4801 2.993853 CCCCTGGAGACTTCTGCC 59.006 66.667 0.00 0.00 32.95 4.85
628 4802 2.674220 CCCCTGGAGACTTCTGCCC 61.674 68.421 0.00 0.00 32.95 5.36
629 4803 2.674220 CCCTGGAGACTTCTGCCCC 61.674 68.421 0.00 0.00 32.95 5.80
630 4804 1.614824 CCTGGAGACTTCTGCCCCT 60.615 63.158 0.00 0.00 32.95 4.79
631 4805 1.601171 CTGGAGACTTCTGCCCCTG 59.399 63.158 0.00 0.00 32.95 4.45
731 4906 6.756074 TGATTCAAAGACGAAACAAAAGCAAT 59.244 30.769 0.00 0.00 0.00 3.56
791 4967 0.393537 GGAGACCAACATGAGGCCAG 60.394 60.000 5.01 0.00 0.00 4.85
906 5082 7.014711 GTCCTCTGGAAGATTACTCATATGTCA 59.985 40.741 1.90 0.00 45.62 3.58
911 5087 9.987272 CTGGAAGATTACTCATATGTCATGTAA 57.013 33.333 1.90 8.66 34.07 2.41
947 5123 8.385111 CAATGGTAGAAAATTGCAAAGCTAATG 58.615 33.333 1.71 0.00 0.00 1.90
983 5159 3.290948 TGGCCCACCATGAATACTAAC 57.709 47.619 0.00 0.00 42.67 2.34
1017 5204 3.334583 TCCATGCTTCTTGTACTCCAC 57.665 47.619 0.00 0.00 0.00 4.02
1057 5246 2.644299 TCCCAGTCAAAGTCACATGGAT 59.356 45.455 0.00 0.00 0.00 3.41
1084 5274 4.051661 TCCATTTTGCCAAGAATCTCCT 57.948 40.909 0.00 0.00 0.00 3.69
1086 5276 4.840115 TCCATTTTGCCAAGAATCTCCTTT 59.160 37.500 0.00 0.00 0.00 3.11
1087 5277 4.933400 CCATTTTGCCAAGAATCTCCTTTG 59.067 41.667 0.00 0.00 0.00 2.77
1220 5564 2.369860 TGATGCAGGTCAAGACACTCTT 59.630 45.455 2.29 0.00 37.14 2.85
1243 5587 2.829720 GAGGCCATGTACCACGGATATA 59.170 50.000 5.01 0.00 0.00 0.86
1254 5598 2.102420 CCACGGATATAGTGTGCTGGAA 59.898 50.000 9.20 0.00 37.88 3.53
1301 5645 4.704833 TGCAGGCTCCGACAAGGC 62.705 66.667 0.00 0.00 41.92 4.35
1417 5765 0.598065 GTCACATGGTGCCTTGGAAC 59.402 55.000 0.00 0.00 32.98 3.62
1556 5904 1.443363 GCGCTGAGAAGCAAAAGCC 60.443 57.895 0.00 0.00 31.84 4.35
1624 5972 5.163581 GCACTTGCAGTTCTTCCAATCATAT 60.164 40.000 0.00 0.00 41.59 1.78
1634 5982 5.814481 TCTTCCAATCATATGTGGTGTTGA 58.186 37.500 11.13 4.64 36.23 3.18
1681 6029 2.970324 TGTGTGGCGACGAAAGGC 60.970 61.111 0.00 0.00 0.00 4.35
1683 6031 1.373748 GTGTGGCGACGAAAGGCTA 60.374 57.895 0.00 0.00 36.51 3.93
1684 6032 0.947180 GTGTGGCGACGAAAGGCTAA 60.947 55.000 0.00 0.00 36.51 3.09
1709 6057 2.029728 CACGCTTCTCCTCTATTTTGCG 59.970 50.000 0.00 0.00 46.21 4.85
1895 6243 9.016438 CATAAGTAAACTTAAAAGGTTAGCCCA 57.984 33.333 6.66 0.00 38.76 5.36
1952 6300 7.755373 TGTTCTGTCTTATAACGAGTTGAGATG 59.245 37.037 0.00 0.00 0.00 2.90
1988 6336 0.824759 GCATTCGGGAGTGTAGACCT 59.175 55.000 0.00 0.00 0.00 3.85
2174 6526 6.567050 CCAAAAGAAATGTCTCCACATATGG 58.433 40.000 7.80 0.00 42.89 2.74
2256 6608 5.674569 GCTGCATACACTTGGTGAACTTATG 60.675 44.000 4.62 3.83 36.96 1.90
2274 6626 2.103153 TGAGAGACCCACAGGAAGTT 57.897 50.000 0.00 0.00 36.73 2.66
2328 6680 4.116328 CGTCTGCTCCGGCGAGAA 62.116 66.667 9.30 0.00 42.25 2.87
2344 6696 0.111061 AGAAGCTGGTCATTGTGCCA 59.889 50.000 0.00 3.51 0.00 4.92
2365 6717 0.959372 AGGAGACGTACACCACCGAG 60.959 60.000 0.00 0.00 0.00 4.63
2460 6812 4.473520 CGCCACATCCTTCCCGCT 62.474 66.667 0.00 0.00 0.00 5.52
2462 6814 2.825836 CCACATCCTTCCCGCTGC 60.826 66.667 0.00 0.00 0.00 5.25
2571 6924 1.669115 GCTGTTGAAGAGCTCGCCA 60.669 57.895 8.37 7.54 33.37 5.69
2581 6934 4.292178 GCTCGCCATAGCTCCGCT 62.292 66.667 0.00 0.00 43.41 5.52
2586 6939 1.735920 GCCATAGCTCCGCTGATCG 60.736 63.158 0.00 0.00 40.10 3.69
2624 6977 1.888512 GAACAATGCCCACTCATGTGT 59.111 47.619 0.00 0.00 42.34 3.72
2625 6978 1.538047 ACAATGCCCACTCATGTGTC 58.462 50.000 0.00 0.00 42.34 3.67
2626 6979 1.202915 ACAATGCCCACTCATGTGTCA 60.203 47.619 0.00 0.00 42.34 3.58
2627 6980 1.471287 CAATGCCCACTCATGTGTCAG 59.529 52.381 0.00 0.00 42.34 3.51
2628 6981 0.034767 ATGCCCACTCATGTGTCAGG 60.035 55.000 0.00 3.52 42.34 3.86
2629 6982 1.377725 GCCCACTCATGTGTCAGGG 60.378 63.158 15.66 15.66 42.34 4.45
2630 6983 2.069776 CCCACTCATGTGTCAGGGT 58.930 57.895 12.91 0.00 42.34 4.34
2631 6984 0.321919 CCCACTCATGTGTCAGGGTG 60.322 60.000 12.91 0.00 42.34 4.61
2632 6985 0.321919 CCACTCATGTGTCAGGGTGG 60.322 60.000 0.00 0.00 42.34 4.61
2633 6986 0.686789 CACTCATGTGTCAGGGTGGA 59.313 55.000 0.00 0.00 39.24 4.02
2634 6987 0.687354 ACTCATGTGTCAGGGTGGAC 59.313 55.000 0.00 0.00 38.29 4.02
2635 6988 0.686789 CTCATGTGTCAGGGTGGACA 59.313 55.000 0.00 0.00 45.06 4.02
2639 6992 2.445085 TGTCAGGGTGGACACGGT 60.445 61.111 0.00 0.00 42.56 4.83
2640 6993 2.342648 GTCAGGGTGGACACGGTC 59.657 66.667 0.00 0.00 37.73 4.79
2673 7026 4.379243 CAGGACCGAGCCGCTGTT 62.379 66.667 0.00 0.00 0.00 3.16
2674 7027 3.626924 AGGACCGAGCCGCTGTTT 61.627 61.111 0.00 0.00 0.00 2.83
2675 7028 3.423154 GGACCGAGCCGCTGTTTG 61.423 66.667 0.00 0.00 0.00 2.93
2676 7029 3.423154 GACCGAGCCGCTGTTTGG 61.423 66.667 0.00 0.00 32.62 3.28
2677 7030 3.876589 GACCGAGCCGCTGTTTGGA 62.877 63.158 5.23 0.00 30.94 3.53
2678 7031 3.423154 CCGAGCCGCTGTTTGGAC 61.423 66.667 0.00 0.00 0.00 4.02
2679 7032 3.423154 CGAGCCGCTGTTTGGACC 61.423 66.667 0.00 0.00 0.00 4.46
2680 7033 3.423154 GAGCCGCTGTTTGGACCG 61.423 66.667 0.00 0.00 0.00 4.79
2686 7039 3.047877 CTGTTTGGACCGGCCGAC 61.048 66.667 30.73 20.04 40.66 4.79
2687 7040 4.973055 TGTTTGGACCGGCCGACG 62.973 66.667 30.73 14.21 40.66 5.12
2760 7113 1.285950 GACCGAACAGGCAAAAGCC 59.714 57.895 0.00 0.00 46.52 4.35
2767 7120 2.282462 AGGCAAAAGCCCGGTCTG 60.282 61.111 0.00 0.00 0.00 3.51
2768 7121 3.373565 GGCAAAAGCCCGGTCTGG 61.374 66.667 0.00 0.00 37.55 3.86
2769 7122 2.282180 GCAAAAGCCCGGTCTGGA 60.282 61.111 0.00 0.00 42.00 3.86
2770 7123 2.626780 GCAAAAGCCCGGTCTGGAC 61.627 63.158 0.00 0.00 42.00 4.02
2785 7138 4.112341 GACCGACGGACCGACCAG 62.112 72.222 23.38 10.13 38.90 4.00
2793 7146 2.351276 GACCGACCAGCAACCCAT 59.649 61.111 0.00 0.00 0.00 4.00
2831 7184 2.341257 CCATGTGGTCGACAAGAGAAG 58.659 52.381 18.91 0.00 38.36 2.85
2832 7185 2.341257 CATGTGGTCGACAAGAGAAGG 58.659 52.381 18.91 0.00 38.36 3.46
2833 7186 0.033504 TGTGGTCGACAAGAGAAGGC 59.966 55.000 18.91 0.00 0.00 4.35
2835 7188 0.318441 TGGTCGACAAGAGAAGGCTG 59.682 55.000 18.91 0.00 0.00 4.85
2853 7206 0.609957 TGCTGGCCACATTCAGAAGG 60.610 55.000 0.00 0.00 33.11 3.46
2864 7217 2.118403 TTCAGAAGGGGGAACAGAGT 57.882 50.000 0.00 0.00 0.00 3.24
2886 7239 0.532862 AAAGGTGCAGTGACTCACGG 60.533 55.000 5.05 5.05 39.64 4.94
2893 7246 1.299541 CAGTGACTCACGGCAAACTT 58.700 50.000 3.46 0.00 39.64 2.66
2904 7257 2.275380 GCAAACTTGATGGCGGGGT 61.275 57.895 0.00 0.00 0.00 4.95
2928 7281 4.858680 GGCCGGGGAAGCAGCTAC 62.859 72.222 2.18 0.00 0.00 3.58
2930 7283 3.458163 CCGGGGAAGCAGCTACGA 61.458 66.667 0.00 0.00 0.00 3.43
2931 7284 2.202756 CGGGGAAGCAGCTACGAC 60.203 66.667 0.00 0.00 0.00 4.34
2932 7285 2.202756 GGGGAAGCAGCTACGACG 60.203 66.667 0.00 0.00 0.00 5.12
2933 7286 2.707849 GGGGAAGCAGCTACGACGA 61.708 63.158 0.00 0.00 0.00 4.20
2934 7287 1.516603 GGGAAGCAGCTACGACGAC 60.517 63.158 0.00 0.00 0.00 4.34
2935 7288 1.868251 GGAAGCAGCTACGACGACG 60.868 63.158 5.58 5.58 45.75 5.12
2985 7338 0.028747 TGGGGATGGAGGATGATGGT 60.029 55.000 0.00 0.00 0.00 3.55
3036 7389 4.646945 TCCTTGCACTAGGAAGTAGATCTG 59.353 45.833 5.18 0.00 41.33 2.90
3045 7398 2.482142 GGAAGTAGATCTGAAGGTGGCG 60.482 54.545 5.18 0.00 0.00 5.69
3048 7401 1.067821 GTAGATCTGAAGGTGGCGGAG 59.932 57.143 5.18 0.00 0.00 4.63
3119 7472 4.740822 GCCGGTGGCCCTCAATGT 62.741 66.667 1.90 0.00 44.06 2.71
3166 7525 2.345991 GGCGAGGTGGCACTGTAA 59.654 61.111 18.45 0.00 44.08 2.41
3203 7562 0.613777 GTCAACGAGTTGGGAGGGAT 59.386 55.000 14.99 0.00 40.78 3.85
3278 7643 1.073397 GGTGGGATGGGAGAGGGAT 60.073 63.158 0.00 0.00 0.00 3.85
3287 7652 2.340443 GAGAGGGATAAGGCGCCG 59.660 66.667 23.20 0.00 0.00 6.46
3288 7653 2.444140 AGAGGGATAAGGCGCCGT 60.444 61.111 23.20 22.12 0.00 5.68
3289 7654 2.029221 GAGGGATAAGGCGCCGTC 59.971 66.667 20.96 18.93 32.67 4.79
3290 7655 2.762459 AGGGATAAGGCGCCGTCA 60.762 61.111 20.96 9.43 0.00 4.35
3291 7656 2.588034 GGGATAAGGCGCCGTCAC 60.588 66.667 20.96 17.04 0.00 3.67
3292 7657 2.588034 GGATAAGGCGCCGTCACC 60.588 66.667 20.96 19.16 0.00 4.02
3293 7658 2.960129 GATAAGGCGCCGTCACCG 60.960 66.667 20.96 0.00 0.00 4.94
3309 7674 4.697756 CGCCCGCCTTGAACTGGA 62.698 66.667 0.00 0.00 0.00 3.86
3310 7675 3.056328 GCCCGCCTTGAACTGGAC 61.056 66.667 0.00 0.00 0.00 4.02
3311 7676 2.742372 CCCGCCTTGAACTGGACG 60.742 66.667 0.00 0.00 0.00 4.79
3312 7677 2.342279 CCGCCTTGAACTGGACGA 59.658 61.111 0.00 0.00 0.00 4.20
3313 7678 1.738099 CCGCCTTGAACTGGACGAG 60.738 63.158 0.00 0.00 0.00 4.18
3314 7679 1.738099 CGCCTTGAACTGGACGAGG 60.738 63.158 0.00 0.00 40.75 4.63
3315 7680 1.671742 GCCTTGAACTGGACGAGGA 59.328 57.895 11.90 0.00 40.36 3.71
3316 7681 0.670854 GCCTTGAACTGGACGAGGAC 60.671 60.000 11.90 2.79 40.36 3.85
3317 7682 0.037232 CCTTGAACTGGACGAGGACC 60.037 60.000 0.00 0.00 40.36 4.46
3318 7683 0.388649 CTTGAACTGGACGAGGACCG 60.389 60.000 0.00 0.00 45.44 4.79
3319 7684 1.812686 TTGAACTGGACGAGGACCGG 61.813 60.000 0.00 0.00 43.93 5.28
3320 7685 2.995574 AACTGGACGAGGACCGGG 60.996 66.667 6.32 0.00 43.93 5.73
3321 7686 3.822636 AACTGGACGAGGACCGGGT 62.823 63.158 6.32 0.00 43.93 5.28
3322 7687 3.450115 CTGGACGAGGACCGGGTC 61.450 72.222 19.06 19.06 43.93 4.46
3323 7688 3.940506 CTGGACGAGGACCGGGTCT 62.941 68.421 25.39 12.37 43.93 3.85
3324 7689 2.273449 GGACGAGGACCGGGTCTA 59.727 66.667 25.39 0.00 43.93 2.59
3325 7690 1.152798 GGACGAGGACCGGGTCTAT 60.153 63.158 25.39 15.15 43.93 1.98
3326 7691 0.754587 GGACGAGGACCGGGTCTATT 60.755 60.000 25.39 12.33 43.93 1.73
3327 7692 0.667453 GACGAGGACCGGGTCTATTC 59.333 60.000 25.39 18.37 43.93 1.75
3328 7693 0.258194 ACGAGGACCGGGTCTATTCT 59.742 55.000 25.39 14.48 43.93 2.40
3329 7694 0.953003 CGAGGACCGGGTCTATTCTC 59.047 60.000 25.39 20.41 32.47 2.87
3330 7695 1.477195 CGAGGACCGGGTCTATTCTCT 60.477 57.143 25.39 13.41 32.47 3.10
3331 7696 2.232399 GAGGACCGGGTCTATTCTCTC 58.768 57.143 25.39 17.67 32.47 3.20
3332 7697 1.854280 AGGACCGGGTCTATTCTCTCT 59.146 52.381 25.39 9.52 32.47 3.10
3333 7698 2.158579 AGGACCGGGTCTATTCTCTCTC 60.159 54.545 25.39 5.94 32.47 3.20
3334 7699 2.158579 GGACCGGGTCTATTCTCTCTCT 60.159 54.545 25.39 0.00 32.47 3.10
3335 7700 3.558033 GACCGGGTCTATTCTCTCTCTT 58.442 50.000 19.92 0.00 0.00 2.85
3336 7701 3.558033 ACCGGGTCTATTCTCTCTCTTC 58.442 50.000 6.32 0.00 0.00 2.87
3337 7702 2.888414 CCGGGTCTATTCTCTCTCTTCC 59.112 54.545 0.00 0.00 0.00 3.46
3338 7703 3.435890 CCGGGTCTATTCTCTCTCTTCCT 60.436 52.174 0.00 0.00 0.00 3.36
3339 7704 4.211920 CGGGTCTATTCTCTCTCTTCCTT 58.788 47.826 0.00 0.00 0.00 3.36
3340 7705 4.277423 CGGGTCTATTCTCTCTCTTCCTTC 59.723 50.000 0.00 0.00 0.00 3.46
3341 7706 5.454966 GGGTCTATTCTCTCTCTTCCTTCT 58.545 45.833 0.00 0.00 0.00 2.85
3342 7707 5.535030 GGGTCTATTCTCTCTCTTCCTTCTC 59.465 48.000 0.00 0.00 0.00 2.87
3343 7708 6.365520 GGTCTATTCTCTCTCTTCCTTCTCT 58.634 44.000 0.00 0.00 0.00 3.10
3344 7709 6.486993 GGTCTATTCTCTCTCTTCCTTCTCTC 59.513 46.154 0.00 0.00 0.00 3.20
3345 7710 7.283329 GTCTATTCTCTCTCTTCCTTCTCTCT 58.717 42.308 0.00 0.00 0.00 3.10
3346 7711 7.442666 GTCTATTCTCTCTCTTCCTTCTCTCTC 59.557 44.444 0.00 0.00 0.00 3.20
3347 7712 5.779241 TTCTCTCTCTTCCTTCTCTCTCT 57.221 43.478 0.00 0.00 0.00 3.10
3348 7713 5.359194 TCTCTCTCTTCCTTCTCTCTCTC 57.641 47.826 0.00 0.00 0.00 3.20
3349 7714 5.032846 TCTCTCTCTTCCTTCTCTCTCTCT 58.967 45.833 0.00 0.00 0.00 3.10
3350 7715 6.202331 TCTCTCTCTTCCTTCTCTCTCTCTA 58.798 44.000 0.00 0.00 0.00 2.43
3351 7716 6.846505 TCTCTCTCTTCCTTCTCTCTCTCTAT 59.153 42.308 0.00 0.00 0.00 1.98
3352 7717 6.830912 TCTCTCTTCCTTCTCTCTCTCTATG 58.169 44.000 0.00 0.00 0.00 2.23
3353 7718 5.376625 TCTCTTCCTTCTCTCTCTCTATGC 58.623 45.833 0.00 0.00 0.00 3.14
3354 7719 4.133820 TCTTCCTTCTCTCTCTCTATGCG 58.866 47.826 0.00 0.00 0.00 4.73
3355 7720 2.857483 TCCTTCTCTCTCTCTATGCGG 58.143 52.381 0.00 0.00 0.00 5.69
3356 7721 2.173782 TCCTTCTCTCTCTCTATGCGGT 59.826 50.000 0.00 0.00 0.00 5.68
3357 7722 2.293122 CCTTCTCTCTCTCTATGCGGTG 59.707 54.545 0.00 0.00 0.00 4.94
3358 7723 1.313772 TCTCTCTCTCTATGCGGTGC 58.686 55.000 0.00 0.00 0.00 5.01
3359 7724 0.040514 CTCTCTCTCTATGCGGTGCG 60.041 60.000 0.00 0.00 0.00 5.34
3360 7725 0.748367 TCTCTCTCTATGCGGTGCGT 60.748 55.000 0.00 0.00 0.00 5.24
3361 7726 0.593518 CTCTCTCTATGCGGTGCGTG 60.594 60.000 0.00 0.00 0.00 5.34
3362 7727 2.202743 TCTCTATGCGGTGCGTGC 60.203 61.111 0.00 0.00 0.00 5.34
3363 7728 3.264897 CTCTATGCGGTGCGTGCC 61.265 66.667 0.00 0.00 0.00 5.01
3364 7729 4.830765 TCTATGCGGTGCGTGCCC 62.831 66.667 0.00 0.00 0.00 5.36
3365 7730 4.838152 CTATGCGGTGCGTGCCCT 62.838 66.667 0.00 0.00 0.00 5.19
3366 7731 3.439513 CTATGCGGTGCGTGCCCTA 62.440 63.158 0.00 0.00 0.00 3.53
3367 7732 3.439513 TATGCGGTGCGTGCCCTAG 62.440 63.158 0.00 0.00 0.00 3.02
3370 7735 2.813908 CGGTGCGTGCCCTAGTTC 60.814 66.667 0.00 0.00 0.00 3.01
3371 7736 2.345991 GGTGCGTGCCCTAGTTCA 59.654 61.111 0.00 0.00 0.00 3.18
3372 7737 2.033194 GGTGCGTGCCCTAGTTCAC 61.033 63.158 2.50 2.50 0.00 3.18
3373 7738 1.301401 GTGCGTGCCCTAGTTCACA 60.301 57.895 10.84 0.00 33.03 3.58
3374 7739 1.005037 TGCGTGCCCTAGTTCACAG 60.005 57.895 10.84 6.03 33.03 3.66
3375 7740 1.292223 GCGTGCCCTAGTTCACAGA 59.708 57.895 10.84 0.00 33.03 3.41
3376 7741 0.108138 GCGTGCCCTAGTTCACAGAT 60.108 55.000 10.84 0.00 33.03 2.90
3377 7742 1.645034 CGTGCCCTAGTTCACAGATG 58.355 55.000 10.84 0.00 33.03 2.90
3378 7743 1.066858 CGTGCCCTAGTTCACAGATGT 60.067 52.381 10.84 0.00 33.03 3.06
3379 7744 2.612972 CGTGCCCTAGTTCACAGATGTT 60.613 50.000 10.84 0.00 33.03 2.71
3380 7745 2.744202 GTGCCCTAGTTCACAGATGTTG 59.256 50.000 6.71 0.00 33.63 3.33
3381 7746 2.290260 TGCCCTAGTTCACAGATGTTGG 60.290 50.000 0.00 0.00 0.00 3.77
3382 7747 2.027192 GCCCTAGTTCACAGATGTTGGA 60.027 50.000 0.00 0.00 0.00 3.53
3383 7748 3.866651 CCCTAGTTCACAGATGTTGGAG 58.133 50.000 0.00 0.00 0.00 3.86
3384 7749 3.265791 CCTAGTTCACAGATGTTGGAGC 58.734 50.000 0.00 0.00 0.00 4.70
3385 7750 3.055530 CCTAGTTCACAGATGTTGGAGCT 60.056 47.826 0.00 0.00 0.00 4.09
3386 7751 2.775890 AGTTCACAGATGTTGGAGCTG 58.224 47.619 0.00 0.00 44.22 4.24
3387 7752 1.808945 GTTCACAGATGTTGGAGCTGG 59.191 52.381 0.00 0.00 42.84 4.85
3388 7753 1.351076 TCACAGATGTTGGAGCTGGA 58.649 50.000 0.00 0.00 42.84 3.86
3389 7754 1.002430 TCACAGATGTTGGAGCTGGAC 59.998 52.381 0.00 0.00 42.84 4.02
3390 7755 1.002888 CACAGATGTTGGAGCTGGACT 59.997 52.381 0.00 0.00 42.84 3.85
3391 7756 1.002888 ACAGATGTTGGAGCTGGACTG 59.997 52.381 0.00 0.00 42.84 3.51
3392 7757 0.617413 AGATGTTGGAGCTGGACTGG 59.383 55.000 0.00 0.00 0.00 4.00
3393 7758 0.393537 GATGTTGGAGCTGGACTGGG 60.394 60.000 0.00 0.00 0.00 4.45
3394 7759 2.360475 GTTGGAGCTGGACTGGGC 60.360 66.667 0.00 0.00 0.00 5.36
3395 7760 3.650950 TTGGAGCTGGACTGGGCC 61.651 66.667 0.00 0.00 0.00 5.80
3396 7761 4.980592 TGGAGCTGGACTGGGCCA 62.981 66.667 5.85 5.85 36.30 5.36
3397 7762 3.650950 GGAGCTGGACTGGGCCAA 61.651 66.667 8.04 0.00 37.52 4.52
3398 7763 2.045536 GAGCTGGACTGGGCCAAG 60.046 66.667 8.04 5.25 37.52 3.61
3399 7764 2.530151 AGCTGGACTGGGCCAAGA 60.530 61.111 16.25 0.00 37.52 3.02
3400 7765 1.919600 GAGCTGGACTGGGCCAAGAT 61.920 60.000 16.25 0.00 37.52 2.40
3401 7766 1.000396 GCTGGACTGGGCCAAGATT 60.000 57.895 16.25 0.00 37.52 2.40
3402 7767 1.034292 GCTGGACTGGGCCAAGATTC 61.034 60.000 16.25 0.80 37.52 2.52
3403 7768 0.745845 CTGGACTGGGCCAAGATTCG 60.746 60.000 16.25 0.00 37.52 3.34
3404 7769 1.452108 GGACTGGGCCAAGATTCGG 60.452 63.158 16.25 0.00 0.00 4.30
3405 7770 1.299976 GACTGGGCCAAGATTCGGT 59.700 57.895 16.25 0.32 0.00 4.69
3406 7771 0.744771 GACTGGGCCAAGATTCGGTC 60.745 60.000 16.25 7.43 0.00 4.79
3408 7773 2.513897 GGGCCAAGATTCGGTCCG 60.514 66.667 4.39 4.39 38.87 4.79
3409 7774 3.202706 GGCCAAGATTCGGTCCGC 61.203 66.667 6.34 0.00 0.00 5.54
3410 7775 2.125106 GCCAAGATTCGGTCCGCT 60.125 61.111 6.34 0.00 0.00 5.52
3411 7776 2.174319 GCCAAGATTCGGTCCGCTC 61.174 63.158 6.34 5.98 0.00 5.03
3412 7777 1.878522 CCAAGATTCGGTCCGCTCG 60.879 63.158 6.34 0.00 0.00 5.03
3413 7778 1.878522 CAAGATTCGGTCCGCTCGG 60.879 63.158 6.34 1.14 0.00 4.63
3414 7779 2.348888 AAGATTCGGTCCGCTCGGT 61.349 57.895 6.34 0.00 36.47 4.69
3415 7780 1.885163 AAGATTCGGTCCGCTCGGTT 61.885 55.000 6.34 0.00 36.47 4.44
3416 7781 1.033746 AGATTCGGTCCGCTCGGTTA 61.034 55.000 6.34 0.00 36.47 2.85
3417 7782 0.594284 GATTCGGTCCGCTCGGTTAG 60.594 60.000 6.34 1.40 36.47 2.34
3432 7797 3.564235 GGTTAGCCCGGTTAAAAACAG 57.436 47.619 0.00 0.00 0.00 3.16
3433 7798 2.229543 GGTTAGCCCGGTTAAAAACAGG 59.770 50.000 0.00 2.41 44.98 4.00
3439 7804 1.881591 CGGTTAAAAACAGGACCGGA 58.118 50.000 9.46 0.00 37.13 5.14
3440 7805 1.532437 CGGTTAAAAACAGGACCGGAC 59.468 52.381 9.46 0.00 37.13 4.79
3441 7806 1.881973 GGTTAAAAACAGGACCGGACC 59.118 52.381 15.76 15.76 0.00 4.46
3442 7807 2.574450 GTTAAAAACAGGACCGGACCA 58.426 47.619 24.99 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 4.776322 TCTTGGCGGTGGCGATGG 62.776 66.667 0.00 0.00 41.24 3.51
14 15 2.203070 GATCTTGGCGGTGGCGAT 60.203 61.111 0.00 0.00 41.24 4.58
15 16 3.371097 GAGATCTTGGCGGTGGCGA 62.371 63.158 0.00 0.00 41.24 5.54
18 19 0.533755 GGATGAGATCTTGGCGGTGG 60.534 60.000 0.00 0.00 0.00 4.61
20 21 1.043116 TCGGATGAGATCTTGGCGGT 61.043 55.000 0.00 0.00 0.00 5.68
21 22 0.319383 CTCGGATGAGATCTTGGCGG 60.319 60.000 0.00 0.00 45.57 6.13
22 23 0.943359 GCTCGGATGAGATCTTGGCG 60.943 60.000 0.00 0.00 45.57 5.69
24 25 0.319383 CGGCTCGGATGAGATCTTGG 60.319 60.000 0.00 0.00 45.57 3.61
25 26 3.191903 CGGCTCGGATGAGATCTTG 57.808 57.895 0.00 0.00 45.57 3.02
68 69 2.193248 GTAGGGCTGGGCATGACC 59.807 66.667 12.04 12.04 37.93 4.02
69 70 2.193248 GGTAGGGCTGGGCATGAC 59.807 66.667 0.00 0.00 0.00 3.06
74 75 2.774351 ATGGAGGTAGGGCTGGGC 60.774 66.667 0.00 0.00 0.00 5.36
75 76 2.150051 GGATGGAGGTAGGGCTGGG 61.150 68.421 0.00 0.00 0.00 4.45
76 77 1.074167 AGGATGGAGGTAGGGCTGG 60.074 63.158 0.00 0.00 0.00 4.85
78 79 0.105246 CAGAGGATGGAGGTAGGGCT 60.105 60.000 0.00 0.00 0.00 5.19
79 80 2.446512 CAGAGGATGGAGGTAGGGC 58.553 63.158 0.00 0.00 0.00 5.19
105 106 1.069596 TGATGTGGCGATCGGATGG 59.930 57.895 18.30 0.00 0.00 3.51
106 107 1.551503 CGTGATGTGGCGATCGGATG 61.552 60.000 18.30 0.00 0.00 3.51
107 108 1.300156 CGTGATGTGGCGATCGGAT 60.300 57.895 18.30 0.00 0.00 4.18
108 109 2.104132 CGTGATGTGGCGATCGGA 59.896 61.111 18.30 0.00 0.00 4.55
110 111 2.230940 GGACGTGATGTGGCGATCG 61.231 63.158 11.69 11.69 0.00 3.69
112 113 1.153568 CTGGACGTGATGTGGCGAT 60.154 57.895 0.00 0.00 0.00 4.58
113 114 2.261361 CTGGACGTGATGTGGCGA 59.739 61.111 0.00 0.00 0.00 5.54
114 115 3.490759 GCTGGACGTGATGTGGCG 61.491 66.667 0.00 0.00 0.00 5.69
115 116 2.358615 TGCTGGACGTGATGTGGC 60.359 61.111 0.00 0.00 0.00 5.01
116 117 0.320683 TTCTGCTGGACGTGATGTGG 60.321 55.000 0.00 0.00 0.00 4.17
117 118 0.792640 GTTCTGCTGGACGTGATGTG 59.207 55.000 0.00 0.00 0.00 3.21
119 120 0.792640 GTGTTCTGCTGGACGTGATG 59.207 55.000 0.00 0.00 0.00 3.07
121 122 1.069090 GGTGTTCTGCTGGACGTGA 59.931 57.895 0.00 0.00 0.00 4.35
122 123 1.961277 GGGTGTTCTGCTGGACGTG 60.961 63.158 0.00 0.00 0.00 4.49
123 124 2.426023 GGGTGTTCTGCTGGACGT 59.574 61.111 0.00 0.00 0.00 4.34
126 127 4.680237 CGCGGGTGTTCTGCTGGA 62.680 66.667 0.00 0.00 45.36 3.86
184 185 4.335647 ACGCCAGCCTGGTCCAAG 62.336 66.667 13.35 1.97 40.46 3.61
185 186 4.329545 GACGCCAGCCTGGTCCAA 62.330 66.667 13.35 0.00 40.46 3.53
188 189 4.459089 GAGGACGCCAGCCTGGTC 62.459 72.222 13.35 2.43 40.46 4.02
199 200 1.880340 GATGGCTTCAGCGAGGACG 60.880 63.158 0.00 0.00 43.26 4.79
232 233 2.498726 CTCTCCTTGCTCGAGGCC 59.501 66.667 15.58 0.00 40.92 5.19
233 234 1.608717 TTCCTCTCCTTGCTCGAGGC 61.609 60.000 15.58 7.24 43.16 4.70
234 235 0.898320 TTTCCTCTCCTTGCTCGAGG 59.102 55.000 15.58 0.00 44.48 4.63
235 236 1.821753 TCTTTCCTCTCCTTGCTCGAG 59.178 52.381 8.45 8.45 0.00 4.04
236 237 1.924731 TCTTTCCTCTCCTTGCTCGA 58.075 50.000 0.00 0.00 0.00 4.04
237 238 2.482839 GGATCTTTCCTCTCCTTGCTCG 60.483 54.545 0.00 0.00 39.14 5.03
238 239 2.158827 GGGATCTTTCCTCTCCTTGCTC 60.159 54.545 0.00 0.00 42.20 4.26
239 240 1.843206 GGGATCTTTCCTCTCCTTGCT 59.157 52.381 0.00 0.00 42.20 3.91
242 243 1.501582 CGGGGATCTTTCCTCTCCTT 58.498 55.000 0.00 0.00 40.79 3.36
244 245 1.448069 GCGGGGATCTTTCCTCTCC 59.552 63.158 0.00 0.00 40.79 3.71
246 247 1.003573 AGGCGGGGATCTTTCCTCT 59.996 57.895 0.00 0.00 40.79 3.69
247 248 1.338136 TGAGGCGGGGATCTTTCCTC 61.338 60.000 13.29 13.29 42.20 3.71
248 249 0.914417 TTGAGGCGGGGATCTTTCCT 60.914 55.000 0.00 0.00 42.20 3.36
249 250 0.748367 GTTGAGGCGGGGATCTTTCC 60.748 60.000 0.00 0.00 41.77 3.13
250 251 0.748367 GGTTGAGGCGGGGATCTTTC 60.748 60.000 0.00 0.00 0.00 2.62
251 252 1.208165 AGGTTGAGGCGGGGATCTTT 61.208 55.000 0.00 0.00 0.00 2.52
253 254 1.049289 GTAGGTTGAGGCGGGGATCT 61.049 60.000 0.00 0.00 0.00 2.75
255 256 2.432300 CGTAGGTTGAGGCGGGGAT 61.432 63.158 0.00 0.00 0.00 3.85
256 257 3.072468 CGTAGGTTGAGGCGGGGA 61.072 66.667 0.00 0.00 0.00 4.81
261 262 2.508663 GTCGGCGTAGGTTGAGGC 60.509 66.667 6.85 0.00 0.00 4.70
262 263 2.183555 GGTCGGCGTAGGTTGAGG 59.816 66.667 6.85 0.00 0.00 3.86
263 264 1.153823 CTGGTCGGCGTAGGTTGAG 60.154 63.158 6.85 0.00 0.00 3.02
264 265 0.968901 ATCTGGTCGGCGTAGGTTGA 60.969 55.000 6.85 0.00 0.00 3.18
265 266 0.527817 GATCTGGTCGGCGTAGGTTG 60.528 60.000 6.85 0.00 0.00 3.77
266 267 1.814527 GATCTGGTCGGCGTAGGTT 59.185 57.895 6.85 0.00 0.00 3.50
268 269 2.331805 CGATCTGGTCGGCGTAGG 59.668 66.667 6.85 0.00 46.47 3.18
303 304 2.419198 CAGATTCCTCCCTCGCCG 59.581 66.667 0.00 0.00 0.00 6.46
306 307 0.105964 TCCTCCAGATTCCTCCCTCG 60.106 60.000 0.00 0.00 0.00 4.63
307 308 1.715785 CTCCTCCAGATTCCTCCCTC 58.284 60.000 0.00 0.00 0.00 4.30
308 309 0.267356 CCTCCTCCAGATTCCTCCCT 59.733 60.000 0.00 0.00 0.00 4.20
309 310 0.766288 CCCTCCTCCAGATTCCTCCC 60.766 65.000 0.00 0.00 0.00 4.30
310 311 1.414866 GCCCTCCTCCAGATTCCTCC 61.415 65.000 0.00 0.00 0.00 4.30
311 312 1.414866 GGCCCTCCTCCAGATTCCTC 61.415 65.000 0.00 0.00 0.00 3.71
317 318 2.283809 GCTAGGCCCTCCTCCAGA 59.716 66.667 0.00 0.00 43.06 3.86
344 345 3.934962 GAGGGGGCCAGATCTCGC 61.935 72.222 4.39 3.37 0.00 5.03
345 346 3.610669 CGAGGGGGCCAGATCTCG 61.611 72.222 18.16 18.16 42.09 4.04
346 347 3.237741 CCGAGGGGGCCAGATCTC 61.238 72.222 4.39 5.63 0.00 2.75
347 348 4.095400 ACCGAGGGGGCCAGATCT 62.095 66.667 4.39 0.00 40.62 2.75
348 349 3.551407 GACCGAGGGGGCCAGATC 61.551 72.222 4.39 0.00 40.62 2.75
378 379 4.487412 CACGTACCCCCTCGCGTC 62.487 72.222 5.77 0.00 35.25 5.19
381 382 3.834799 CCTCACGTACCCCCTCGC 61.835 72.222 0.00 0.00 0.00 5.03
382 383 3.834799 GCCTCACGTACCCCCTCG 61.835 72.222 0.00 0.00 0.00 4.63
383 384 2.682494 TGCCTCACGTACCCCCTC 60.682 66.667 0.00 0.00 0.00 4.30
384 385 2.683933 CTGCCTCACGTACCCCCT 60.684 66.667 0.00 0.00 0.00 4.79
385 386 3.782443 CCTGCCTCACGTACCCCC 61.782 72.222 0.00 0.00 0.00 5.40
387 388 0.035739 TTTTCCTGCCTCACGTACCC 59.964 55.000 0.00 0.00 0.00 3.69
404 405 3.069016 CCTTGGGCTCCTTTTACGTTTTT 59.931 43.478 0.00 0.00 0.00 1.94
406 407 2.235891 CCTTGGGCTCCTTTTACGTTT 58.764 47.619 0.00 0.00 0.00 3.60
407 408 1.905637 CCTTGGGCTCCTTTTACGTT 58.094 50.000 0.00 0.00 0.00 3.99
408 409 0.608308 GCCTTGGGCTCCTTTTACGT 60.608 55.000 0.80 0.00 46.69 3.57
409 410 2.180674 GCCTTGGGCTCCTTTTACG 58.819 57.895 0.80 0.00 46.69 3.18
420 421 7.639113 TTACTTATCTTTGTATTGCCTTGGG 57.361 36.000 0.00 0.00 0.00 4.12
439 440 9.988350 CAGAGAATTTTGCACGTATATTTACTT 57.012 29.630 0.00 0.00 0.00 2.24
440 441 9.162764 ACAGAGAATTTTGCACGTATATTTACT 57.837 29.630 0.00 0.00 0.00 2.24
441 442 9.210426 CACAGAGAATTTTGCACGTATATTTAC 57.790 33.333 0.00 0.00 0.00 2.01
442 443 8.394877 CCACAGAGAATTTTGCACGTATATTTA 58.605 33.333 0.00 0.00 0.00 1.40
443 444 7.120579 TCCACAGAGAATTTTGCACGTATATTT 59.879 33.333 0.00 0.00 0.00 1.40
444 445 6.597672 TCCACAGAGAATTTTGCACGTATATT 59.402 34.615 0.00 0.00 0.00 1.28
445 446 6.112734 TCCACAGAGAATTTTGCACGTATAT 58.887 36.000 0.00 0.00 0.00 0.86
446 447 5.483811 TCCACAGAGAATTTTGCACGTATA 58.516 37.500 0.00 0.00 0.00 1.47
447 448 4.323417 TCCACAGAGAATTTTGCACGTAT 58.677 39.130 0.00 0.00 0.00 3.06
448 449 3.734463 TCCACAGAGAATTTTGCACGTA 58.266 40.909 0.00 0.00 0.00 3.57
449 450 2.571212 TCCACAGAGAATTTTGCACGT 58.429 42.857 0.00 0.00 0.00 4.49
450 451 3.624326 TTCCACAGAGAATTTTGCACG 57.376 42.857 0.00 0.00 0.00 5.34
451 452 5.125100 TCATTCCACAGAGAATTTTGCAC 57.875 39.130 0.00 0.00 34.19 4.57
452 453 5.477637 TCATCATTCCACAGAGAATTTTGCA 59.522 36.000 0.00 0.00 34.19 4.08
459 460 9.465199 TCAAATTAATCATCATTCCACAGAGAA 57.535 29.630 0.00 0.00 0.00 2.87
461 462 9.512435 GTTCAAATTAATCATCATTCCACAGAG 57.488 33.333 0.00 0.00 0.00 3.35
462 463 8.469200 GGTTCAAATTAATCATCATTCCACAGA 58.531 33.333 0.00 0.00 0.00 3.41
464 465 8.365060 AGGTTCAAATTAATCATCATTCCACA 57.635 30.769 0.00 0.00 0.00 4.17
467 468 8.854117 AGCTAGGTTCAAATTAATCATCATTCC 58.146 33.333 0.00 0.00 0.00 3.01
471 472 9.330063 CAGTAGCTAGGTTCAAATTAATCATCA 57.670 33.333 0.00 0.00 0.00 3.07
472 473 9.547753 TCAGTAGCTAGGTTCAAATTAATCATC 57.452 33.333 0.00 0.00 0.00 2.92
474 475 9.733556 TTTCAGTAGCTAGGTTCAAATTAATCA 57.266 29.630 0.00 0.00 0.00 2.57
516 4690 3.934457 ACCGGCATTAAAAGGTTTGAG 57.066 42.857 0.00 0.00 32.17 3.02
528 4702 1.178534 CCAACAGTCCAACCGGCATT 61.179 55.000 0.00 0.00 0.00 3.56
616 4790 0.616111 TCTCCAGGGGCAGAAGTCTC 60.616 60.000 0.00 0.00 0.00 3.36
617 4791 0.907230 GTCTCCAGGGGCAGAAGTCT 60.907 60.000 0.00 0.00 0.00 3.24
618 4792 0.907230 AGTCTCCAGGGGCAGAAGTC 60.907 60.000 0.00 0.00 0.00 3.01
619 4793 0.474660 AAGTCTCCAGGGGCAGAAGT 60.475 55.000 0.00 0.00 0.00 3.01
620 4794 0.695347 AAAGTCTCCAGGGGCAGAAG 59.305 55.000 0.00 0.00 0.00 2.85
621 4795 1.073923 GAAAAGTCTCCAGGGGCAGAA 59.926 52.381 0.00 0.00 0.00 3.02
622 4796 0.693049 GAAAAGTCTCCAGGGGCAGA 59.307 55.000 0.00 0.00 0.00 4.26
623 4797 0.322906 GGAAAAGTCTCCAGGGGCAG 60.323 60.000 0.00 0.00 35.36 4.85
624 4798 1.065410 TGGAAAAGTCTCCAGGGGCA 61.065 55.000 0.00 0.00 40.71 5.36
625 4799 0.609406 GTGGAAAAGTCTCCAGGGGC 60.609 60.000 0.00 0.00 46.29 5.80
626 4800 0.771127 TGTGGAAAAGTCTCCAGGGG 59.229 55.000 0.00 0.00 46.29 4.79
627 4801 2.821969 CAATGTGGAAAAGTCTCCAGGG 59.178 50.000 0.00 0.00 46.29 4.45
628 4802 2.821969 CCAATGTGGAAAAGTCTCCAGG 59.178 50.000 0.00 0.00 46.29 4.45
629 4803 3.754965 TCCAATGTGGAAAAGTCTCCAG 58.245 45.455 0.00 0.00 45.00 3.86
630 4804 3.874383 TCCAATGTGGAAAAGTCTCCA 57.126 42.857 0.00 0.00 45.00 3.86
738 4913 8.870116 GGTAAATATGGGAAGGAAAATAGCATT 58.130 33.333 0.00 0.00 0.00 3.56
791 4967 6.837992 TCGTGCATTTTTGATAGTTTAGGAC 58.162 36.000 0.00 0.00 0.00 3.85
911 5087 7.657354 GCAATTTTCTACCATTGGACTCTTTTT 59.343 33.333 10.37 0.00 31.97 1.94
926 5102 8.519492 TGTTCATTAGCTTTGCAATTTTCTAC 57.481 30.769 0.00 0.00 0.00 2.59
947 5123 6.881602 TGGTGGGCCAAAATTAATTATTGTTC 59.118 34.615 8.40 0.00 42.83 3.18
965 5141 5.057149 CAGTAGTTAGTATTCATGGTGGGC 58.943 45.833 0.00 0.00 0.00 5.36
983 5159 2.756760 AGCATGGAAAATGCACCAGTAG 59.243 45.455 12.44 0.00 46.77 2.57
1017 5204 2.033675 GGACAAGTGGGTGGTTAAAACG 59.966 50.000 0.00 0.00 0.00 3.60
1057 5246 7.301868 AGATTCTTGGCAAAATGGAAAAGTA 57.698 32.000 0.00 0.00 0.00 2.24
1128 5472 3.707821 AGCTCTCATCAGGAGGTGT 57.292 52.632 0.00 0.00 44.19 4.16
1243 5587 3.299503 ACCTCAATTTTTCCAGCACACT 58.700 40.909 0.00 0.00 0.00 3.55
1301 5645 4.225984 GCTAGACGAGTCATTGATGCTAG 58.774 47.826 5.99 0.00 0.00 3.42
1417 5765 9.270576 CATATTAGCAATAGCATTTTCTAAGCG 57.729 33.333 0.00 0.00 45.49 4.68
1556 5904 2.483876 TCTCCAACAAGAAGCTCAACG 58.516 47.619 0.00 0.00 0.00 4.10
1585 5933 1.576577 AGTGCATGATCACCAGGAGA 58.423 50.000 0.00 0.00 37.68 3.71
1624 5972 1.740585 CTTTCCAACGTCAACACCACA 59.259 47.619 0.00 0.00 0.00 4.17
1634 5982 3.093814 ACCAAGGTTTTCTTTCCAACGT 58.906 40.909 0.00 0.00 32.41 3.99
1709 6057 2.508526 AGAGGTTGTGTCCATTCAAGC 58.491 47.619 0.00 0.00 40.77 4.01
1763 6111 7.915293 AACTCAATAATTACCAACATCGTCA 57.085 32.000 0.00 0.00 0.00 4.35
1895 6243 0.403271 AGGCTGCACTGATCCAAACT 59.597 50.000 0.50 0.00 0.00 2.66
1952 6300 2.888834 TGCCAGTTTCTTGAAAAGGC 57.111 45.000 22.78 22.78 46.24 4.35
1988 6336 0.323302 TAGCCGTGGATGTTCTGCAA 59.677 50.000 0.00 0.00 0.00 4.08
2174 6526 0.104671 AAGCATGTTTGGGTGCACAC 59.895 50.000 20.43 17.25 43.63 3.82
2256 6608 3.493767 AAAACTTCCTGTGGGTCTCTC 57.506 47.619 0.00 0.00 0.00 3.20
2344 6696 0.316204 CGGTGGTGTACGTCTCCTTT 59.684 55.000 0.00 0.00 0.00 3.11
2365 6717 3.435186 GACAAGAAGCCGGCCAGC 61.435 66.667 26.15 13.20 0.00 4.85
2410 6762 4.385405 GCTGGTGCACTCTCGCCT 62.385 66.667 17.98 0.00 39.41 5.52
2433 6785 1.375908 GATGTGGCGTCAAGAGGCA 60.376 57.895 15.53 0.03 43.38 4.75
2581 6934 2.186644 CATCCACGCCACCGATCA 59.813 61.111 0.00 0.00 38.29 2.92
2586 6939 2.821366 CAGCTCATCCACGCCACC 60.821 66.667 0.00 0.00 0.00 4.61
2656 7009 3.883744 AAACAGCGGCTCGGTCCTG 62.884 63.158 0.00 0.00 34.62 3.86
2657 7010 3.626924 AAACAGCGGCTCGGTCCT 61.627 61.111 0.00 0.00 34.62 3.85
2658 7011 3.423154 CAAACAGCGGCTCGGTCC 61.423 66.667 0.00 0.00 34.62 4.46
2659 7012 3.423154 CCAAACAGCGGCTCGGTC 61.423 66.667 0.00 0.00 34.62 4.79
2660 7013 3.936203 TCCAAACAGCGGCTCGGT 61.936 61.111 0.00 0.00 38.40 4.69
2661 7014 3.423154 GTCCAAACAGCGGCTCGG 61.423 66.667 0.00 0.00 0.00 4.63
2662 7015 3.423154 GGTCCAAACAGCGGCTCG 61.423 66.667 0.00 0.00 0.00 5.03
2663 7016 3.423154 CGGTCCAAACAGCGGCTC 61.423 66.667 0.00 0.00 33.59 4.70
2669 7022 3.047877 GTCGGCCGGTCCAAACAG 61.048 66.667 27.83 0.00 34.01 3.16
2670 7023 4.973055 CGTCGGCCGGTCCAAACA 62.973 66.667 27.83 0.00 34.01 2.83
2713 7066 3.883744 AAACAGGACCGCTCGGCTG 62.884 63.158 8.41 10.76 39.32 4.85
2714 7067 3.178540 AAAACAGGACCGCTCGGCT 62.179 57.895 8.41 0.00 39.32 5.52
2715 7068 2.668550 AAAACAGGACCGCTCGGC 60.669 61.111 8.41 1.39 39.32 5.54
2716 7069 2.033194 GGAAAACAGGACCGCTCGG 61.033 63.158 6.79 6.79 42.03 4.63
2717 7070 1.004918 AGGAAAACAGGACCGCTCG 60.005 57.895 0.00 0.00 0.00 5.03
2718 7071 1.578206 GCAGGAAAACAGGACCGCTC 61.578 60.000 0.00 0.00 0.00 5.03
2719 7072 1.600916 GCAGGAAAACAGGACCGCT 60.601 57.895 0.00 0.00 0.00 5.52
2720 7073 1.896660 TGCAGGAAAACAGGACCGC 60.897 57.895 0.00 0.00 0.00 5.68
2721 7074 1.515521 GGTGCAGGAAAACAGGACCG 61.516 60.000 0.00 0.00 37.34 4.79
2722 7075 1.515521 CGGTGCAGGAAAACAGGACC 61.516 60.000 0.00 0.00 42.52 4.46
2723 7076 1.515521 CCGGTGCAGGAAAACAGGAC 61.516 60.000 0.00 0.00 33.96 3.85
2724 7077 1.228124 CCGGTGCAGGAAAACAGGA 60.228 57.895 0.00 0.00 33.96 3.86
2725 7078 1.228124 TCCGGTGCAGGAAAACAGG 60.228 57.895 0.00 0.00 37.36 4.00
2768 7121 4.112341 CTGGTCGGTCCGTCGGTC 62.112 72.222 11.88 5.43 39.52 4.79
2771 7124 4.351938 TTGCTGGTCGGTCCGTCG 62.352 66.667 11.88 0.00 39.52 5.12
2772 7125 2.737376 GTTGCTGGTCGGTCCGTC 60.737 66.667 11.88 5.43 39.52 4.79
2773 7126 4.309950 GGTTGCTGGTCGGTCCGT 62.310 66.667 11.88 0.00 39.52 4.69
2832 7185 1.246056 TTCTGAATGTGGCCAGCAGC 61.246 55.000 5.11 4.96 42.60 5.25
2833 7186 0.809385 CTTCTGAATGTGGCCAGCAG 59.191 55.000 5.11 12.10 0.00 4.24
2835 7188 1.318158 CCCTTCTGAATGTGGCCAGC 61.318 60.000 5.11 1.20 0.00 4.85
2853 7206 2.615747 GCACCTTTCTACTCTGTTCCCC 60.616 54.545 0.00 0.00 0.00 4.81
2864 7217 2.288213 CGTGAGTCACTGCACCTTTCTA 60.288 50.000 20.64 0.00 31.34 2.10
2886 7239 2.212900 GACCCCGCCATCAAGTTTGC 62.213 60.000 0.00 0.00 0.00 3.68
2887 7240 1.883021 GACCCCGCCATCAAGTTTG 59.117 57.895 0.00 0.00 0.00 2.93
2893 7246 4.770362 TCCTCGACCCCGCCATCA 62.770 66.667 0.00 0.00 35.37 3.07
2935 7288 0.570734 CGTCATGCGTCGTCCATTAC 59.429 55.000 0.00 0.00 35.54 1.89
2936 7289 0.526739 CCGTCATGCGTCGTCCATTA 60.527 55.000 8.37 0.00 39.32 1.90
2937 7290 1.809619 CCGTCATGCGTCGTCCATT 60.810 57.895 8.37 0.00 39.32 3.16
2938 7291 2.202743 CCGTCATGCGTCGTCCAT 60.203 61.111 8.37 0.00 39.32 3.41
2948 7301 3.958147 AAGTCCAGCCGCCGTCATG 62.958 63.158 0.00 0.00 0.00 3.07
2949 7302 3.706373 AAGTCCAGCCGCCGTCAT 61.706 61.111 0.00 0.00 0.00 3.06
2950 7303 4.680237 CAAGTCCAGCCGCCGTCA 62.680 66.667 0.00 0.00 0.00 4.35
3036 7389 1.153549 CAGTAGCTCCGCCACCTTC 60.154 63.158 0.00 0.00 0.00 3.46
3045 7398 0.250513 CCACCTTGTCCAGTAGCTCC 59.749 60.000 0.00 0.00 0.00 4.70
3048 7401 1.809684 GAACCACCTTGTCCAGTAGC 58.190 55.000 0.00 0.00 0.00 3.58
3052 7405 0.944311 CGACGAACCACCTTGTCCAG 60.944 60.000 0.00 0.00 0.00 3.86
3159 7518 2.383855 CCCCTCTCCTCTCTTACAGTG 58.616 57.143 0.00 0.00 0.00 3.66
3166 7525 2.277404 GTCGCCCCTCTCCTCTCT 59.723 66.667 0.00 0.00 0.00 3.10
3203 7562 1.152652 GCCCGATCTCTCCTCTCCA 60.153 63.158 0.00 0.00 0.00 3.86
3292 7657 4.697756 TCCAGTTCAAGGCGGGCG 62.698 66.667 0.00 0.00 0.00 6.13
3293 7658 3.056328 GTCCAGTTCAAGGCGGGC 61.056 66.667 0.00 0.00 0.00 6.13
3294 7659 2.742372 CGTCCAGTTCAAGGCGGG 60.742 66.667 0.00 0.00 0.00 6.13
3295 7660 1.738099 CTCGTCCAGTTCAAGGCGG 60.738 63.158 0.00 0.00 0.00 6.13
3296 7661 1.738099 CCTCGTCCAGTTCAAGGCG 60.738 63.158 0.00 0.00 0.00 5.52
3297 7662 0.670854 GTCCTCGTCCAGTTCAAGGC 60.671 60.000 0.00 0.00 0.00 4.35
3298 7663 0.037232 GGTCCTCGTCCAGTTCAAGG 60.037 60.000 0.00 0.00 0.00 3.61
3299 7664 0.388649 CGGTCCTCGTCCAGTTCAAG 60.389 60.000 0.00 0.00 0.00 3.02
3300 7665 1.663739 CGGTCCTCGTCCAGTTCAA 59.336 57.895 0.00 0.00 0.00 2.69
3301 7666 2.273179 CCGGTCCTCGTCCAGTTCA 61.273 63.158 0.00 0.00 37.11 3.18
3302 7667 2.572284 CCGGTCCTCGTCCAGTTC 59.428 66.667 0.00 0.00 37.11 3.01
3303 7668 2.995574 CCCGGTCCTCGTCCAGTT 60.996 66.667 0.00 0.00 37.11 3.16
3304 7669 4.296729 ACCCGGTCCTCGTCCAGT 62.297 66.667 0.00 0.00 37.11 4.00
3305 7670 2.547640 TAGACCCGGTCCTCGTCCAG 62.548 65.000 14.32 0.00 37.11 3.86
3306 7671 1.929860 ATAGACCCGGTCCTCGTCCA 61.930 60.000 14.32 0.00 37.11 4.02
3307 7672 0.754587 AATAGACCCGGTCCTCGTCC 60.755 60.000 14.32 0.00 37.11 4.79
3308 7673 0.667453 GAATAGACCCGGTCCTCGTC 59.333 60.000 14.32 0.00 37.11 4.20
3309 7674 0.258194 AGAATAGACCCGGTCCTCGT 59.742 55.000 14.32 0.00 37.11 4.18
3310 7675 0.953003 GAGAATAGACCCGGTCCTCG 59.047 60.000 14.32 0.00 38.88 4.63
3311 7676 2.158579 AGAGAGAATAGACCCGGTCCTC 60.159 54.545 14.32 12.74 32.18 3.71
3312 7677 1.854280 AGAGAGAATAGACCCGGTCCT 59.146 52.381 14.32 3.84 32.18 3.85
3313 7678 2.158579 AGAGAGAGAATAGACCCGGTCC 60.159 54.545 14.32 0.00 32.18 4.46
3314 7679 3.217681 AGAGAGAGAATAGACCCGGTC 57.782 52.381 9.81 9.81 0.00 4.79
3315 7680 3.558033 GAAGAGAGAGAATAGACCCGGT 58.442 50.000 0.00 0.00 0.00 5.28
3316 7681 2.888414 GGAAGAGAGAGAATAGACCCGG 59.112 54.545 0.00 0.00 0.00 5.73
3317 7682 3.827722 AGGAAGAGAGAGAATAGACCCG 58.172 50.000 0.00 0.00 0.00 5.28
3318 7683 5.454966 AGAAGGAAGAGAGAGAATAGACCC 58.545 45.833 0.00 0.00 0.00 4.46
3319 7684 6.365520 AGAGAAGGAAGAGAGAGAATAGACC 58.634 44.000 0.00 0.00 0.00 3.85
3320 7685 7.283329 AGAGAGAAGGAAGAGAGAGAATAGAC 58.717 42.308 0.00 0.00 0.00 2.59
3321 7686 7.348274 AGAGAGAGAAGGAAGAGAGAGAATAGA 59.652 40.741 0.00 0.00 0.00 1.98
3322 7687 7.512992 AGAGAGAGAAGGAAGAGAGAGAATAG 58.487 42.308 0.00 0.00 0.00 1.73
3323 7688 7.348274 AGAGAGAGAGAAGGAAGAGAGAGAATA 59.652 40.741 0.00 0.00 0.00 1.75
3324 7689 6.159398 AGAGAGAGAGAAGGAAGAGAGAGAAT 59.841 42.308 0.00 0.00 0.00 2.40
3325 7690 5.488919 AGAGAGAGAGAAGGAAGAGAGAGAA 59.511 44.000 0.00 0.00 0.00 2.87
3326 7691 5.032846 AGAGAGAGAGAAGGAAGAGAGAGA 58.967 45.833 0.00 0.00 0.00 3.10
3327 7692 5.365021 AGAGAGAGAGAAGGAAGAGAGAG 57.635 47.826 0.00 0.00 0.00 3.20
3328 7693 6.688922 GCATAGAGAGAGAGAAGGAAGAGAGA 60.689 46.154 0.00 0.00 0.00 3.10
3329 7694 5.471456 GCATAGAGAGAGAGAAGGAAGAGAG 59.529 48.000 0.00 0.00 0.00 3.20
3330 7695 5.376625 GCATAGAGAGAGAGAAGGAAGAGA 58.623 45.833 0.00 0.00 0.00 3.10
3331 7696 4.214119 CGCATAGAGAGAGAGAAGGAAGAG 59.786 50.000 0.00 0.00 0.00 2.85
3332 7697 4.133820 CGCATAGAGAGAGAGAAGGAAGA 58.866 47.826 0.00 0.00 0.00 2.87
3333 7698 3.253188 CCGCATAGAGAGAGAGAAGGAAG 59.747 52.174 0.00 0.00 0.00 3.46
3334 7699 3.218453 CCGCATAGAGAGAGAGAAGGAA 58.782 50.000 0.00 0.00 0.00 3.36
3335 7700 2.173782 ACCGCATAGAGAGAGAGAAGGA 59.826 50.000 0.00 0.00 0.00 3.36
3336 7701 2.293122 CACCGCATAGAGAGAGAGAAGG 59.707 54.545 0.00 0.00 0.00 3.46
3337 7702 2.287547 GCACCGCATAGAGAGAGAGAAG 60.288 54.545 0.00 0.00 0.00 2.85
3338 7703 1.678627 GCACCGCATAGAGAGAGAGAA 59.321 52.381 0.00 0.00 0.00 2.87
3339 7704 1.313772 GCACCGCATAGAGAGAGAGA 58.686 55.000 0.00 0.00 0.00 3.10
3340 7705 0.040514 CGCACCGCATAGAGAGAGAG 60.041 60.000 0.00 0.00 0.00 3.20
3341 7706 0.748367 ACGCACCGCATAGAGAGAGA 60.748 55.000 0.00 0.00 0.00 3.10
3342 7707 0.593518 CACGCACCGCATAGAGAGAG 60.594 60.000 0.00 0.00 0.00 3.20
3343 7708 1.433471 CACGCACCGCATAGAGAGA 59.567 57.895 0.00 0.00 0.00 3.10
3344 7709 2.233654 GCACGCACCGCATAGAGAG 61.234 63.158 0.00 0.00 0.00 3.20
3345 7710 2.202743 GCACGCACCGCATAGAGA 60.203 61.111 0.00 0.00 0.00 3.10
3346 7711 3.264897 GGCACGCACCGCATAGAG 61.265 66.667 0.00 0.00 0.00 2.43
3347 7712 4.830765 GGGCACGCACCGCATAGA 62.831 66.667 0.00 0.00 0.00 1.98
3348 7713 3.439513 TAGGGCACGCACCGCATAG 62.440 63.158 0.00 0.00 0.00 2.23
3349 7714 3.439513 CTAGGGCACGCACCGCATA 62.440 63.158 0.00 0.00 0.00 3.14
3350 7715 4.838152 CTAGGGCACGCACCGCAT 62.838 66.667 0.00 0.00 0.00 4.73
3353 7718 2.813908 GAACTAGGGCACGCACCG 60.814 66.667 0.00 0.00 0.00 4.94
3354 7719 2.033194 GTGAACTAGGGCACGCACC 61.033 63.158 0.00 0.00 0.00 5.01
3355 7720 1.291877 CTGTGAACTAGGGCACGCAC 61.292 60.000 11.17 0.00 37.83 5.34
3356 7721 1.005037 CTGTGAACTAGGGCACGCA 60.005 57.895 11.17 4.13 37.83 5.24
3357 7722 0.108138 ATCTGTGAACTAGGGCACGC 60.108 55.000 11.17 0.00 37.83 5.34
3358 7723 1.066858 ACATCTGTGAACTAGGGCACG 60.067 52.381 11.17 7.39 37.83 5.34
3359 7724 2.744202 CAACATCTGTGAACTAGGGCAC 59.256 50.000 9.53 9.53 35.63 5.01
3360 7725 2.290260 CCAACATCTGTGAACTAGGGCA 60.290 50.000 0.00 0.00 0.00 5.36
3361 7726 2.027192 TCCAACATCTGTGAACTAGGGC 60.027 50.000 0.00 0.00 0.00 5.19
3362 7727 3.866651 CTCCAACATCTGTGAACTAGGG 58.133 50.000 0.00 0.00 0.00 3.53
3363 7728 3.055530 AGCTCCAACATCTGTGAACTAGG 60.056 47.826 0.00 0.00 0.00 3.02
3364 7729 3.931468 CAGCTCCAACATCTGTGAACTAG 59.069 47.826 0.00 0.00 0.00 2.57
3365 7730 3.306989 CCAGCTCCAACATCTGTGAACTA 60.307 47.826 0.00 0.00 0.00 2.24
3366 7731 2.551721 CCAGCTCCAACATCTGTGAACT 60.552 50.000 0.00 0.00 0.00 3.01
3367 7732 1.808945 CCAGCTCCAACATCTGTGAAC 59.191 52.381 0.00 0.00 0.00 3.18
3368 7733 1.699083 TCCAGCTCCAACATCTGTGAA 59.301 47.619 0.00 0.00 0.00 3.18
3369 7734 1.002430 GTCCAGCTCCAACATCTGTGA 59.998 52.381 0.00 0.00 0.00 3.58
3370 7735 1.002888 AGTCCAGCTCCAACATCTGTG 59.997 52.381 0.00 0.00 0.00 3.66
3371 7736 1.002888 CAGTCCAGCTCCAACATCTGT 59.997 52.381 0.00 0.00 0.00 3.41
3372 7737 1.678123 CCAGTCCAGCTCCAACATCTG 60.678 57.143 0.00 0.00 0.00 2.90
3373 7738 0.617413 CCAGTCCAGCTCCAACATCT 59.383 55.000 0.00 0.00 0.00 2.90
3374 7739 0.393537 CCCAGTCCAGCTCCAACATC 60.394 60.000 0.00 0.00 0.00 3.06
3375 7740 1.687612 CCCAGTCCAGCTCCAACAT 59.312 57.895 0.00 0.00 0.00 2.71
3376 7741 3.160585 CCCAGTCCAGCTCCAACA 58.839 61.111 0.00 0.00 0.00 3.33
3377 7742 2.360475 GCCCAGTCCAGCTCCAAC 60.360 66.667 0.00 0.00 0.00 3.77
3378 7743 3.650950 GGCCCAGTCCAGCTCCAA 61.651 66.667 0.00 0.00 0.00 3.53
3379 7744 4.980592 TGGCCCAGTCCAGCTCCA 62.981 66.667 0.00 0.00 0.00 3.86
3380 7745 3.635268 CTTGGCCCAGTCCAGCTCC 62.635 68.421 0.00 0.00 37.44 4.70
3381 7746 1.919600 ATCTTGGCCCAGTCCAGCTC 61.920 60.000 0.00 0.00 37.44 4.09
3382 7747 1.504275 AATCTTGGCCCAGTCCAGCT 61.504 55.000 0.00 0.00 37.44 4.24
3383 7748 1.000396 AATCTTGGCCCAGTCCAGC 60.000 57.895 0.00 0.00 37.44 4.85
3384 7749 0.745845 CGAATCTTGGCCCAGTCCAG 60.746 60.000 0.00 0.00 37.44 3.86
3385 7750 1.299648 CGAATCTTGGCCCAGTCCA 59.700 57.895 0.00 0.00 0.00 4.02
3386 7751 1.452108 CCGAATCTTGGCCCAGTCC 60.452 63.158 0.00 0.00 0.00 3.85
3387 7752 0.744771 GACCGAATCTTGGCCCAGTC 60.745 60.000 0.00 0.00 0.00 3.51
3388 7753 1.299976 GACCGAATCTTGGCCCAGT 59.700 57.895 0.00 0.00 0.00 4.00
3389 7754 1.452108 GGACCGAATCTTGGCCCAG 60.452 63.158 0.00 0.00 0.00 4.45
3390 7755 2.674754 GGACCGAATCTTGGCCCA 59.325 61.111 0.00 0.00 0.00 5.36
3391 7756 2.513897 CGGACCGAATCTTGGCCC 60.514 66.667 8.64 0.00 0.00 5.80
3392 7757 3.202706 GCGGACCGAATCTTGGCC 61.203 66.667 20.50 0.00 0.00 5.36
3393 7758 2.125106 AGCGGACCGAATCTTGGC 60.125 61.111 20.50 0.00 0.00 4.52
3394 7759 1.878522 CGAGCGGACCGAATCTTGG 60.879 63.158 20.50 0.00 0.00 3.61
3395 7760 1.878522 CCGAGCGGACCGAATCTTG 60.879 63.158 20.50 9.13 37.50 3.02
3396 7761 1.885163 AACCGAGCGGACCGAATCTT 61.885 55.000 20.50 3.30 38.96 2.40
3397 7762 1.033746 TAACCGAGCGGACCGAATCT 61.034 55.000 20.50 4.91 38.96 2.40
3398 7763 0.594284 CTAACCGAGCGGACCGAATC 60.594 60.000 20.50 13.63 38.96 2.52
3399 7764 1.436336 CTAACCGAGCGGACCGAAT 59.564 57.895 20.50 4.61 38.96 3.34
3400 7765 2.879907 CTAACCGAGCGGACCGAA 59.120 61.111 20.50 0.00 38.96 4.30
3401 7766 3.818787 GCTAACCGAGCGGACCGA 61.819 66.667 20.50 0.00 42.62 4.69
3412 7777 2.229543 CCTGTTTTTAACCGGGCTAACC 59.770 50.000 6.32 0.00 32.71 2.85
3413 7778 3.058016 GTCCTGTTTTTAACCGGGCTAAC 60.058 47.826 6.32 3.34 37.40 2.34
3414 7779 3.148412 GTCCTGTTTTTAACCGGGCTAA 58.852 45.455 6.32 0.00 37.40 3.09
3415 7780 2.552809 GGTCCTGTTTTTAACCGGGCTA 60.553 50.000 6.32 0.00 39.90 3.93
3416 7781 1.612676 GTCCTGTTTTTAACCGGGCT 58.387 50.000 6.32 0.00 37.40 5.19
3417 7782 0.599558 GGTCCTGTTTTTAACCGGGC 59.400 55.000 6.32 0.00 39.36 6.13
3418 7783 0.876399 CGGTCCTGTTTTTAACCGGG 59.124 55.000 6.32 0.00 36.53 5.73
3420 7785 1.532437 GTCCGGTCCTGTTTTTAACCG 59.468 52.381 0.00 5.83 40.07 4.44
3421 7786 1.881973 GGTCCGGTCCTGTTTTTAACC 59.118 52.381 10.82 0.00 0.00 2.85
3422 7787 2.574450 TGGTCCGGTCCTGTTTTTAAC 58.426 47.619 18.85 0.00 0.00 2.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.