Multiple sequence alignment - TraesCS2B01G027400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G027400 chr2B 100.000 3475 0 0 1 3475 12996967 12993493 0.000000e+00 6418.0
1 TraesCS2B01G027400 chr2B 93.745 2574 133 13 397 2959 11444849 11447405 0.000000e+00 3836.0
2 TraesCS2B01G027400 chr2B 83.276 1740 264 21 830 2549 12422139 12423871 0.000000e+00 1576.0
3 TraesCS2B01G027400 chr2B 82.838 1748 272 22 828 2556 11518494 11516756 0.000000e+00 1541.0
4 TraesCS2B01G027400 chr2B 87.452 263 29 1 2992 3254 11447492 11447750 2.030000e-77 300.0
5 TraesCS2B01G027400 chr2B 93.814 97 6 0 219 315 11444731 11444827 2.790000e-31 147.0
6 TraesCS2B01G027400 chr2B 88.506 87 10 0 641 727 138993589 138993503 4.740000e-19 106.0
7 TraesCS2B01G027400 chr2B 85.106 94 13 1 2741 2834 429491658 429491566 1.030000e-15 95.3
8 TraesCS2B01G027400 chr2B 90.278 72 7 0 3261 3332 695105374 695105445 1.030000e-15 95.3
9 TraesCS2B01G027400 chr2B 100.000 28 0 0 285 312 12996650 12996623 6.000000e-03 52.8
10 TraesCS2B01G027400 chr2B 100.000 28 0 0 318 345 12996683 12996656 6.000000e-03 52.8
11 TraesCS2B01G027400 chr2D 92.130 3253 162 53 45 3253 9666169 9662967 0.000000e+00 4503.0
12 TraesCS2B01G027400 chr2D 87.331 1705 179 20 872 2553 8695530 8697220 0.000000e+00 1917.0
13 TraesCS2B01G027400 chr2D 82.903 1743 270 22 828 2549 9604570 9606305 0.000000e+00 1543.0
14 TraesCS2B01G027400 chr2D 83.696 1656 240 17 831 2469 19586841 19588483 0.000000e+00 1535.0
15 TraesCS2B01G027400 chr2D 83.062 1535 219 26 995 2514 8670684 8672192 0.000000e+00 1356.0
16 TraesCS2B01G027400 chr2D 81.967 122 18 4 646 766 9604450 9604568 2.210000e-17 100.0
17 TraesCS2B01G027400 chr2D 90.541 74 7 0 3259 3332 1639733 1639660 7.940000e-17 99.0
18 TraesCS2B01G027400 chr2D 86.207 87 12 0 641 727 85929880 85929794 1.030000e-15 95.3
19 TraesCS2B01G027400 chr2A 91.082 2792 158 46 35 2798 8737782 8735054 0.000000e+00 3692.0
20 TraesCS2B01G027400 chr2A 82.674 1743 271 24 828 2549 8707219 8708951 0.000000e+00 1517.0
21 TraesCS2B01G027400 chr2A 85.714 1211 147 17 828 2021 86432283 86431082 0.000000e+00 1254.0
22 TraesCS2B01G027400 chr2A 89.011 91 7 2 3332 3419 764214732 764214822 3.670000e-20 110.0
23 TraesCS2B01G027400 chr2A 86.842 76 9 1 3258 3332 499580533 499580608 2.220000e-12 84.2
24 TraesCS2B01G027400 chr2A 83.951 81 12 1 3255 3334 650606908 650606988 3.720000e-10 76.8
25 TraesCS2B01G027400 chr2A 91.837 49 4 0 3398 3446 8734985 8735033 6.220000e-08 69.4
26 TraesCS2B01G027400 chrUn 86.975 1382 150 16 1254 2609 225597635 225596258 0.000000e+00 1528.0
27 TraesCS2B01G027400 chrUn 86.975 1382 150 16 1254 2609 261780590 261781967 0.000000e+00 1528.0
28 TraesCS2B01G027400 chrUn 86.975 1382 150 16 1254 2609 273226881 273225504 0.000000e+00 1528.0
29 TraesCS2B01G027400 chr7D 92.771 83 3 2 3332 3412 49806674 49806593 2.190000e-22 117.0
30 TraesCS2B01G027400 chr7D 91.566 83 5 1 3332 3412 625343624 625343542 2.830000e-21 113.0
31 TraesCS2B01G027400 chr7D 90.588 85 6 1 3332 3414 587554017 587553933 1.020000e-20 111.0
32 TraesCS2B01G027400 chr7D 90.588 85 5 2 3332 3414 8593314 8593231 3.670000e-20 110.0
33 TraesCS2B01G027400 chr7D 90.541 74 6 1 2741 2814 515132404 515132476 2.850000e-16 97.1
34 TraesCS2B01G027400 chr1B 92.771 83 3 2 3332 3412 411179896 411179815 2.190000e-22 117.0
35 TraesCS2B01G027400 chr1B 85.106 94 13 1 2741 2834 306062031 306061939 1.030000e-15 95.3
36 TraesCS2B01G027400 chr1B 90.141 71 7 0 3262 3332 77674906 77674836 3.690000e-15 93.5
37 TraesCS2B01G027400 chr5D 91.566 83 4 2 3332 3411 428237918 428237836 1.020000e-20 111.0
38 TraesCS2B01G027400 chr5D 88.043 92 9 1 3332 3421 524494630 524494721 1.320000e-19 108.0
39 TraesCS2B01G027400 chr5D 87.805 82 8 1 2741 2822 88467825 88467746 1.030000e-15 95.3
40 TraesCS2B01G027400 chr3D 91.463 82 5 1 3332 3411 524863244 524863163 1.020000e-20 111.0
41 TraesCS2B01G027400 chr3D 91.429 70 6 0 3263 3332 477641901 477641970 2.850000e-16 97.1
42 TraesCS2B01G027400 chr3D 86.905 84 9 1 2741 2822 430382233 430382150 3.690000e-15 93.5
43 TraesCS2B01G027400 chr4D 90.541 74 7 0 3259 3332 21685391 21685464 7.940000e-17 99.0
44 TraesCS2B01G027400 chr4B 89.474 76 8 0 3257 3332 406345794 406345869 2.850000e-16 97.1
45 TraesCS2B01G027400 chr4B 88.158 76 9 0 3257 3332 465013112 465013037 1.330000e-14 91.6
46 TraesCS2B01G027400 chr3A 86.905 84 9 1 2741 2822 55028593 55028676 3.690000e-15 93.5
47 TraesCS2B01G027400 chr3A 83.529 85 12 2 3249 3332 716360684 716360767 1.030000e-10 78.7
48 TraesCS2B01G027400 chr6D 88.889 72 7 1 3261 3332 335343896 335343966 1.720000e-13 87.9
49 TraesCS2B01G027400 chr6B 86.842 76 9 1 3258 3332 51423850 51423775 2.220000e-12 84.2
50 TraesCS2B01G027400 chr5B 86.667 75 10 0 3258 3332 166385964 166385890 2.220000e-12 84.2
51 TraesCS2B01G027400 chr4A 86.486 74 10 0 3259 3332 677126095 677126022 7.990000e-12 82.4
52 TraesCS2B01G027400 chr5A 90.164 61 4 2 2679 2737 440943972 440943912 1.030000e-10 78.7
53 TraesCS2B01G027400 chr7A 83.951 81 12 1 3253 3332 63721649 63721729 3.720000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G027400 chr2B 12993493 12996967 3474 True 2174.533333 6418 100.000000 1 3475 3 chr2B.!!$R4 3474
1 TraesCS2B01G027400 chr2B 12422139 12423871 1732 False 1576.000000 1576 83.276000 830 2549 1 chr2B.!!$F1 1719
2 TraesCS2B01G027400 chr2B 11516756 11518494 1738 True 1541.000000 1541 82.838000 828 2556 1 chr2B.!!$R1 1728
3 TraesCS2B01G027400 chr2B 11444731 11447750 3019 False 1427.666667 3836 91.670333 219 3254 3 chr2B.!!$F3 3035
4 TraesCS2B01G027400 chr2D 9662967 9666169 3202 True 4503.000000 4503 92.130000 45 3253 1 chr2D.!!$R2 3208
5 TraesCS2B01G027400 chr2D 8695530 8697220 1690 False 1917.000000 1917 87.331000 872 2553 1 chr2D.!!$F2 1681
6 TraesCS2B01G027400 chr2D 19586841 19588483 1642 False 1535.000000 1535 83.696000 831 2469 1 chr2D.!!$F3 1638
7 TraesCS2B01G027400 chr2D 8670684 8672192 1508 False 1356.000000 1356 83.062000 995 2514 1 chr2D.!!$F1 1519
8 TraesCS2B01G027400 chr2D 9604450 9606305 1855 False 821.500000 1543 82.435000 646 2549 2 chr2D.!!$F4 1903
9 TraesCS2B01G027400 chr2A 8735054 8737782 2728 True 3692.000000 3692 91.082000 35 2798 1 chr2A.!!$R1 2763
10 TraesCS2B01G027400 chr2A 8707219 8708951 1732 False 1517.000000 1517 82.674000 828 2549 1 chr2A.!!$F1 1721
11 TraesCS2B01G027400 chr2A 86431082 86432283 1201 True 1254.000000 1254 85.714000 828 2021 1 chr2A.!!$R2 1193
12 TraesCS2B01G027400 chrUn 225596258 225597635 1377 True 1528.000000 1528 86.975000 1254 2609 1 chrUn.!!$R1 1355
13 TraesCS2B01G027400 chrUn 261780590 261781967 1377 False 1528.000000 1528 86.975000 1254 2609 1 chrUn.!!$F1 1355
14 TraesCS2B01G027400 chrUn 273225504 273226881 1377 True 1528.000000 1528 86.975000 1254 2609 1 chrUn.!!$R2 1355

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
181 210 0.243636 GGCCAAGAAATTCCACCACG 59.756 55.0 0.0 0.0 0.00 4.94 F
251 285 0.246635 AGAAGTTCCACGATGACCCG 59.753 55.0 0.0 0.0 0.00 5.28 F
399 454 0.249911 GGTTGGGCACGGATAGCTAG 60.250 60.0 0.0 0.0 0.00 3.42 F
429 484 0.450583 CAGACGTGCTAAGCCGTAGA 59.549 55.0 0.0 0.0 36.12 2.59 F
497 552 0.546747 TCCCCCTCCCTGTGTTGTAG 60.547 60.0 0.0 0.0 0.00 2.74 F
1659 1748 1.023502 TGGTTGCTCATGTGTGTGTG 58.976 50.0 0.0 0.0 0.00 3.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2177 2269 1.075374 AGGCCTTGTTCCATAAGCACA 59.925 47.619 0.00 0.0 0.00 4.57 R
2257 2349 6.830324 TGGTGATTTCTCCTTGATTGGAATAG 59.170 38.462 0.84 0.0 35.43 1.73 R
2351 2443 4.597507 TGAGGGGGTATCCTTGATTCATAC 59.402 45.833 0.00 0.0 37.25 2.39 R
2428 2520 3.577919 CTCCCTGGCAAGGTACTACTAT 58.422 50.000 6.34 0.0 42.74 2.12 R
2473 2565 4.301637 ACACGAGTCCCAAAACAAAATC 57.698 40.909 0.00 0.0 0.00 2.17 R
3438 3623 0.037326 ATCGCTGCTCTCCGTTTTCA 60.037 50.000 0.00 0.0 0.00 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.415544 ACAAATGCTTCAGTTTTTCTTGATATC 57.584 29.630 0.00 0.00 0.00 1.63
27 28 8.581263 CAAATGCTTCAGTTTTTCTTGATATCG 58.419 33.333 0.00 0.00 0.00 2.92
28 29 5.631026 TGCTTCAGTTTTTCTTGATATCGC 58.369 37.500 0.00 0.00 0.00 4.58
29 30 5.181056 TGCTTCAGTTTTTCTTGATATCGCA 59.819 36.000 0.00 0.00 0.00 5.10
30 31 5.509622 GCTTCAGTTTTTCTTGATATCGCAC 59.490 40.000 0.00 0.00 0.00 5.34
31 32 6.552859 TTCAGTTTTTCTTGATATCGCACA 57.447 33.333 0.00 0.00 0.00 4.57
32 33 5.927030 TCAGTTTTTCTTGATATCGCACAC 58.073 37.500 0.00 0.00 0.00 3.82
33 34 5.700832 TCAGTTTTTCTTGATATCGCACACT 59.299 36.000 0.00 0.00 0.00 3.55
34 35 6.204688 TCAGTTTTTCTTGATATCGCACACTT 59.795 34.615 0.00 0.00 0.00 3.16
35 36 6.303970 CAGTTTTTCTTGATATCGCACACTTG 59.696 38.462 0.00 0.00 0.00 3.16
36 37 5.940192 TTTTCTTGATATCGCACACTTGT 57.060 34.783 0.00 0.00 0.00 3.16
75 76 3.200522 CCGGCCAGGCTTTCAATC 58.799 61.111 12.43 0.00 0.00 2.67
90 91 5.842327 GCTTTCAATCAAATGCAAGAAAACG 59.158 36.000 0.00 0.00 0.00 3.60
97 98 2.352503 ATGCAAGAAAACGCATGGAC 57.647 45.000 0.00 0.00 46.78 4.02
117 118 1.897398 GCCACTACGCCTTGTCGTTG 61.897 60.000 0.00 0.00 43.15 4.10
120 121 0.390124 ACTACGCCTTGTCGTTGGAA 59.610 50.000 0.00 0.00 43.15 3.53
121 122 1.001633 ACTACGCCTTGTCGTTGGAAT 59.998 47.619 0.00 0.00 43.15 3.01
131 132 0.726827 TCGTTGGAATCTTCGCATGC 59.273 50.000 7.91 7.91 0.00 4.06
171 200 3.329300 GTCAGAGCTGGCCAAGAAA 57.671 52.632 7.01 0.00 0.00 2.52
172 201 1.831580 GTCAGAGCTGGCCAAGAAAT 58.168 50.000 7.01 0.00 0.00 2.17
173 202 2.165998 GTCAGAGCTGGCCAAGAAATT 58.834 47.619 7.01 0.00 0.00 1.82
174 203 2.163211 GTCAGAGCTGGCCAAGAAATTC 59.837 50.000 7.01 0.00 0.00 2.17
175 204 1.475682 CAGAGCTGGCCAAGAAATTCC 59.524 52.381 7.01 0.00 0.00 3.01
176 205 1.076024 AGAGCTGGCCAAGAAATTCCA 59.924 47.619 7.01 0.00 0.00 3.53
177 206 1.203287 GAGCTGGCCAAGAAATTCCAC 59.797 52.381 7.01 0.00 0.00 4.02
178 207 0.247460 GCTGGCCAAGAAATTCCACC 59.753 55.000 7.01 0.00 0.00 4.61
179 208 1.631405 CTGGCCAAGAAATTCCACCA 58.369 50.000 7.01 0.00 0.00 4.17
180 209 1.273327 CTGGCCAAGAAATTCCACCAC 59.727 52.381 7.01 0.00 0.00 4.16
181 210 0.243636 GGCCAAGAAATTCCACCACG 59.756 55.000 0.00 0.00 0.00 4.94
182 211 1.243902 GCCAAGAAATTCCACCACGA 58.756 50.000 0.00 0.00 0.00 4.35
183 212 1.068541 GCCAAGAAATTCCACCACGAC 60.069 52.381 0.00 0.00 0.00 4.34
184 213 1.539827 CCAAGAAATTCCACCACGACC 59.460 52.381 0.00 0.00 0.00 4.79
185 214 1.539827 CAAGAAATTCCACCACGACCC 59.460 52.381 0.00 0.00 0.00 4.46
186 215 0.321298 AGAAATTCCACCACGACCCG 60.321 55.000 0.00 0.00 0.00 5.28
251 285 0.246635 AGAAGTTCCACGATGACCCG 59.753 55.000 0.00 0.00 0.00 5.28
254 288 1.183030 AGTTCCACGATGACCCGACA 61.183 55.000 0.00 0.00 0.00 4.35
320 354 2.549992 GCCAATGGCGTATATGGAGACA 60.550 50.000 9.14 0.00 42.31 3.41
358 413 2.670401 GCGTATGCCTAATGTCTTGC 57.330 50.000 0.00 0.00 33.98 4.01
360 415 2.221981 GCGTATGCCTAATGTCTTGCTC 59.778 50.000 0.00 0.00 33.98 4.26
361 416 2.472861 CGTATGCCTAATGTCTTGCTCG 59.527 50.000 0.00 0.00 0.00 5.03
362 417 2.698855 ATGCCTAATGTCTTGCTCGT 57.301 45.000 0.00 0.00 0.00 4.18
366 421 2.866762 GCCTAATGTCTTGCTCGTAAGG 59.133 50.000 0.00 0.00 38.47 2.69
367 422 3.679083 GCCTAATGTCTTGCTCGTAAGGT 60.679 47.826 0.00 0.00 38.47 3.50
368 423 4.441079 GCCTAATGTCTTGCTCGTAAGGTA 60.441 45.833 0.00 0.00 38.47 3.08
369 424 5.282510 CCTAATGTCTTGCTCGTAAGGTAG 58.717 45.833 0.00 0.00 38.47 3.18
370 425 5.067413 CCTAATGTCTTGCTCGTAAGGTAGA 59.933 44.000 0.00 0.00 38.47 2.59
371 426 4.640789 ATGTCTTGCTCGTAAGGTAGAG 57.359 45.455 0.00 0.00 37.54 2.43
372 427 2.753452 TGTCTTGCTCGTAAGGTAGAGG 59.247 50.000 0.00 0.00 35.19 3.69
373 428 3.015327 GTCTTGCTCGTAAGGTAGAGGA 58.985 50.000 0.00 0.00 35.19 3.71
374 429 3.065648 GTCTTGCTCGTAAGGTAGAGGAG 59.934 52.174 0.00 0.00 36.26 3.69
375 430 3.054582 TCTTGCTCGTAAGGTAGAGGAGA 60.055 47.826 0.00 0.00 36.26 3.71
376 431 3.579534 TGCTCGTAAGGTAGAGGAGAT 57.420 47.619 0.00 0.00 35.19 2.75
377 432 3.899726 TGCTCGTAAGGTAGAGGAGATT 58.100 45.455 0.00 0.00 35.19 2.40
378 433 3.632604 TGCTCGTAAGGTAGAGGAGATTG 59.367 47.826 0.00 0.00 35.19 2.67
379 434 3.884091 GCTCGTAAGGTAGAGGAGATTGA 59.116 47.826 0.00 0.00 35.19 2.57
380 435 4.023536 GCTCGTAAGGTAGAGGAGATTGAG 60.024 50.000 0.00 0.00 35.19 3.02
381 436 4.462133 TCGTAAGGTAGAGGAGATTGAGG 58.538 47.826 0.00 0.00 38.47 3.86
382 437 4.079901 TCGTAAGGTAGAGGAGATTGAGGT 60.080 45.833 0.00 0.00 38.47 3.85
383 438 4.645588 CGTAAGGTAGAGGAGATTGAGGTT 59.354 45.833 0.00 0.00 0.00 3.50
384 439 5.450688 CGTAAGGTAGAGGAGATTGAGGTTG 60.451 48.000 0.00 0.00 0.00 3.77
385 440 3.379452 AGGTAGAGGAGATTGAGGTTGG 58.621 50.000 0.00 0.00 0.00 3.77
386 441 2.436173 GGTAGAGGAGATTGAGGTTGGG 59.564 54.545 0.00 0.00 0.00 4.12
387 442 0.915364 AGAGGAGATTGAGGTTGGGC 59.085 55.000 0.00 0.00 0.00 5.36
388 443 0.620556 GAGGAGATTGAGGTTGGGCA 59.379 55.000 0.00 0.00 0.00 5.36
389 444 0.329596 AGGAGATTGAGGTTGGGCAC 59.670 55.000 0.00 0.00 0.00 5.01
390 445 1.026718 GGAGATTGAGGTTGGGCACG 61.027 60.000 0.00 0.00 0.00 5.34
391 446 1.002134 AGATTGAGGTTGGGCACGG 60.002 57.895 0.00 0.00 0.00 4.94
392 447 1.002624 GATTGAGGTTGGGCACGGA 60.003 57.895 0.00 0.00 0.00 4.69
393 448 0.394352 GATTGAGGTTGGGCACGGAT 60.394 55.000 0.00 0.00 0.00 4.18
394 449 0.916086 ATTGAGGTTGGGCACGGATA 59.084 50.000 0.00 0.00 0.00 2.59
395 450 0.251916 TTGAGGTTGGGCACGGATAG 59.748 55.000 0.00 0.00 0.00 2.08
396 451 1.523938 GAGGTTGGGCACGGATAGC 60.524 63.158 0.00 0.00 0.00 2.97
397 452 1.972660 GAGGTTGGGCACGGATAGCT 61.973 60.000 0.00 0.00 0.00 3.32
398 453 0.689745 AGGTTGGGCACGGATAGCTA 60.690 55.000 0.00 0.00 0.00 3.32
399 454 0.249911 GGTTGGGCACGGATAGCTAG 60.250 60.000 0.00 0.00 0.00 3.42
429 484 0.450583 CAGACGTGCTAAGCCGTAGA 59.549 55.000 0.00 0.00 36.12 2.59
442 497 2.117910 GCCGTAGAGCACTTCGATTAC 58.882 52.381 11.47 0.00 38.78 1.89
443 498 2.223525 GCCGTAGAGCACTTCGATTACT 60.224 50.000 11.47 0.00 38.78 2.24
444 499 3.734293 GCCGTAGAGCACTTCGATTACTT 60.734 47.826 11.47 0.00 38.78 2.24
445 500 4.497006 GCCGTAGAGCACTTCGATTACTTA 60.497 45.833 11.47 0.00 38.78 2.24
446 501 5.206299 CCGTAGAGCACTTCGATTACTTAG 58.794 45.833 11.47 0.00 38.78 2.18
447 502 5.220815 CCGTAGAGCACTTCGATTACTTAGT 60.221 44.000 11.47 0.00 38.78 2.24
482 537 4.232091 TCTTCCATATACAGGTCTTCCCC 58.768 47.826 0.00 0.00 0.00 4.81
497 552 0.546747 TCCCCCTCCCTGTGTTGTAG 60.547 60.000 0.00 0.00 0.00 2.74
545 603 6.373216 CACTGGAAACCCAAGTTATAAATCGA 59.627 38.462 0.00 0.00 34.19 3.59
556 614 7.700656 CCAAGTTATAAATCGAACCAAATCCAC 59.299 37.037 0.00 0.00 0.00 4.02
558 616 8.209917 AGTTATAAATCGAACCAAATCCACTC 57.790 34.615 0.00 0.00 0.00 3.51
583 641 8.375506 TCTTACAACAGATTACATCAGAAACCT 58.624 33.333 0.00 0.00 0.00 3.50
721 779 4.332819 AGAAGCGCAAGTTATGTATTCCAC 59.667 41.667 11.47 0.00 41.68 4.02
727 785 3.832615 AGTTATGTATTCCACGGGGTC 57.167 47.619 2.12 0.00 34.93 4.46
730 791 1.591768 ATGTATTCCACGGGGTCCTT 58.408 50.000 2.12 0.00 34.93 3.36
751 812 8.135529 GTCCTTGGCCAATAATAAAGATTACAC 58.864 37.037 20.85 0.00 30.24 2.90
818 879 4.938074 TCCCCCGGTGACCGTTCA 62.938 66.667 23.73 0.33 46.80 3.18
820 881 2.358247 CCCCGGTGACCGTTCAAG 60.358 66.667 23.73 6.76 46.80 3.02
837 898 5.461526 GTTCAAGAAAAGCAAGGATACACC 58.538 41.667 0.00 0.00 41.41 4.16
864 925 2.604174 CGTGTGTCGCCCACCTTTC 61.604 63.158 3.12 0.00 43.85 2.62
1302 1379 4.142600 GCATGCTTTGACGAGGTTAGAATT 60.143 41.667 11.37 0.00 0.00 2.17
1658 1747 1.761449 TTGGTTGCTCATGTGTGTGT 58.239 45.000 0.00 0.00 0.00 3.72
1659 1748 1.023502 TGGTTGCTCATGTGTGTGTG 58.976 50.000 0.00 0.00 0.00 3.82
2420 2512 1.893137 AGTCGTGCTCAGGATACACAA 59.107 47.619 0.00 0.00 41.41 3.33
2428 2520 4.530553 TGCTCAGGATACACAAGAAGGTAA 59.469 41.667 0.00 0.00 41.41 2.85
2473 2565 2.034066 ACGGGGTGTGCCATTCTG 59.966 61.111 0.00 0.00 36.17 3.02
2649 2768 5.036117 TCAGAATAAGGCATAGACCCAAC 57.964 43.478 0.00 0.00 0.00 3.77
2688 2810 3.181453 TGAAATAGACGTGAACCAACCCA 60.181 43.478 0.00 0.00 0.00 4.51
2704 2826 5.431731 ACCAACCCATGATTAGATGGTTAGA 59.568 40.000 0.00 0.00 41.38 2.10
2721 2843 5.431731 TGGTTAGATGAACAATGGTATCCCT 59.568 40.000 0.00 0.00 40.09 4.20
2779 2902 0.551396 TCTCGGAGGTGCTCATAGGA 59.449 55.000 4.96 0.00 31.08 2.94
2817 2940 2.942376 TGCGTTTATAGGGTTGAGCATG 59.058 45.455 0.00 0.00 0.00 4.06
2842 2965 7.119992 TGTGCGGTTGTACTATGATAAAAACAT 59.880 33.333 0.00 0.00 0.00 2.71
2989 3138 7.592885 AGTTATAACTAGAGAATAACCCGCA 57.407 36.000 16.60 0.00 36.97 5.69
3069 3253 8.699283 ACTACTGTAGTCGGAAAATATTTGAC 57.301 34.615 14.53 5.36 32.47 3.18
3141 3326 3.058016 CCTTTGACGAAATGACATGTGCT 60.058 43.478 1.15 0.00 0.00 4.40
3152 3337 3.264947 TGACATGTGCTGTGAGATAAGC 58.735 45.455 1.15 0.00 38.54 3.09
3193 3378 7.692908 ATTAATAATGAAAACCATTTCCGCG 57.307 32.000 0.00 0.00 42.55 6.46
3214 3399 1.002201 TGCATGTTTGATGGGCCTTTG 59.998 47.619 4.53 0.00 0.00 2.77
3227 3412 3.980022 TGGGCCTTTGATGAGGTGATATA 59.020 43.478 4.53 0.00 39.11 0.86
3264 3449 7.810658 AGATAACAAATATCATCATGCGAACC 58.189 34.615 0.00 0.00 42.52 3.62
3265 3450 5.833406 AACAAATATCATCATGCGAACCA 57.167 34.783 0.00 0.00 0.00 3.67
3266 3451 5.833406 ACAAATATCATCATGCGAACCAA 57.167 34.783 0.00 0.00 0.00 3.67
3267 3452 6.395426 ACAAATATCATCATGCGAACCAAT 57.605 33.333 0.00 0.00 0.00 3.16
3268 3453 6.808829 ACAAATATCATCATGCGAACCAATT 58.191 32.000 0.00 0.00 0.00 2.32
3269 3454 7.267128 ACAAATATCATCATGCGAACCAATTT 58.733 30.769 0.00 0.00 0.00 1.82
3270 3455 7.223193 ACAAATATCATCATGCGAACCAATTTG 59.777 33.333 0.00 0.00 36.90 2.32
3271 3456 4.724074 ATCATCATGCGAACCAATTTGT 57.276 36.364 0.00 0.00 0.00 2.83
3272 3457 5.833406 ATCATCATGCGAACCAATTTGTA 57.167 34.783 0.00 0.00 0.00 2.41
3273 3458 5.233957 TCATCATGCGAACCAATTTGTAG 57.766 39.130 0.00 0.00 0.00 2.74
3274 3459 4.699735 TCATCATGCGAACCAATTTGTAGT 59.300 37.500 0.00 0.00 0.00 2.73
3275 3460 5.182950 TCATCATGCGAACCAATTTGTAGTT 59.817 36.000 0.00 0.00 0.00 2.24
3276 3461 4.793071 TCATGCGAACCAATTTGTAGTTG 58.207 39.130 0.00 0.00 0.00 3.16
3280 3465 3.855524 GCGAACCAATTTGTAGTTGGGTG 60.856 47.826 9.45 0.37 46.32 4.61
3281 3466 3.305064 CGAACCAATTTGTAGTTGGGTGG 60.305 47.826 9.45 0.62 46.32 4.61
3282 3467 3.639561 GAACCAATTTGTAGTTGGGTGGT 59.360 43.478 9.45 0.00 46.32 4.16
3283 3468 4.034410 AACCAATTTGTAGTTGGGTGGTT 58.966 39.130 9.45 0.00 44.71 3.67
3284 3469 5.209659 AACCAATTTGTAGTTGGGTGGTTA 58.790 37.500 9.45 0.00 44.71 2.85
3285 3470 5.303333 AACCAATTTGTAGTTGGGTGGTTAG 59.697 40.000 9.45 0.00 44.71 2.34
3286 3471 5.074115 CCAATTTGTAGTTGGGTGGTTAGA 58.926 41.667 0.00 0.00 41.90 2.10
3287 3472 5.183140 CCAATTTGTAGTTGGGTGGTTAGAG 59.817 44.000 0.00 0.00 41.90 2.43
3288 3473 4.360951 TTTGTAGTTGGGTGGTTAGAGG 57.639 45.455 0.00 0.00 0.00 3.69
3289 3474 2.262637 TGTAGTTGGGTGGTTAGAGGG 58.737 52.381 0.00 0.00 0.00 4.30
3290 3475 2.158127 TGTAGTTGGGTGGTTAGAGGGA 60.158 50.000 0.00 0.00 0.00 4.20
3291 3476 1.359168 AGTTGGGTGGTTAGAGGGAC 58.641 55.000 0.00 0.00 0.00 4.46
3293 3478 1.003233 GTTGGGTGGTTAGAGGGACTG 59.997 57.143 0.00 0.00 41.55 3.51
3294 3479 0.192566 TGGGTGGTTAGAGGGACTGT 59.807 55.000 0.00 0.00 41.55 3.55
3295 3480 0.613777 GGGTGGTTAGAGGGACTGTG 59.386 60.000 0.00 0.00 41.55 3.66
3296 3481 1.640917 GGTGGTTAGAGGGACTGTGA 58.359 55.000 0.00 0.00 41.55 3.58
3297 3482 2.188817 GGTGGTTAGAGGGACTGTGAT 58.811 52.381 0.00 0.00 41.55 3.06
3298 3483 3.371965 GGTGGTTAGAGGGACTGTGATA 58.628 50.000 0.00 0.00 41.55 2.15
3299 3484 3.967987 GGTGGTTAGAGGGACTGTGATAT 59.032 47.826 0.00 0.00 41.55 1.63
3300 3485 4.409247 GGTGGTTAGAGGGACTGTGATATT 59.591 45.833 0.00 0.00 41.55 1.28
3301 3486 5.453480 GGTGGTTAGAGGGACTGTGATATTC 60.453 48.000 0.00 0.00 41.55 1.75
3302 3487 5.364157 GTGGTTAGAGGGACTGTGATATTCT 59.636 44.000 0.00 0.00 41.55 2.40
3303 3488 5.964477 TGGTTAGAGGGACTGTGATATTCTT 59.036 40.000 0.00 0.00 41.55 2.52
3304 3489 7.069578 GTGGTTAGAGGGACTGTGATATTCTTA 59.930 40.741 0.00 0.00 41.55 2.10
3305 3490 7.622081 TGGTTAGAGGGACTGTGATATTCTTAA 59.378 37.037 0.00 0.00 41.55 1.85
3306 3491 7.927092 GGTTAGAGGGACTGTGATATTCTTAAC 59.073 40.741 0.00 0.00 41.55 2.01
3307 3492 6.487299 AGAGGGACTGTGATATTCTTAACC 57.513 41.667 0.00 0.00 41.55 2.85
3308 3493 5.367060 AGAGGGACTGTGATATTCTTAACCC 59.633 44.000 0.00 0.00 41.55 4.11
3309 3494 5.036916 AGGGACTGTGATATTCTTAACCCA 58.963 41.667 0.00 0.00 37.18 4.51
3310 3495 5.672194 AGGGACTGTGATATTCTTAACCCAT 59.328 40.000 0.00 0.00 37.18 4.00
3311 3496 5.998363 GGGACTGTGATATTCTTAACCCATC 59.002 44.000 0.00 0.00 34.43 3.51
3312 3497 6.409234 GGGACTGTGATATTCTTAACCCATCA 60.409 42.308 0.00 0.00 34.43 3.07
3313 3498 6.708054 GGACTGTGATATTCTTAACCCATCAG 59.292 42.308 0.00 0.00 0.00 2.90
3314 3499 6.595682 ACTGTGATATTCTTAACCCATCAGG 58.404 40.000 0.00 0.00 43.78 3.86
3330 3515 3.363787 AGGGTTCAAATCCTGGTGC 57.636 52.632 0.00 0.00 38.36 5.01
3331 3516 0.779997 AGGGTTCAAATCCTGGTGCT 59.220 50.000 0.00 0.00 38.36 4.40
3332 3517 1.992557 AGGGTTCAAATCCTGGTGCTA 59.007 47.619 0.00 0.00 38.36 3.49
3333 3518 2.025887 AGGGTTCAAATCCTGGTGCTAG 60.026 50.000 0.00 0.00 38.36 3.42
3334 3519 2.369394 GGTTCAAATCCTGGTGCTAGG 58.631 52.381 0.00 0.00 39.29 3.02
3335 3520 2.369394 GTTCAAATCCTGGTGCTAGGG 58.631 52.381 1.75 0.00 38.42 3.53
3336 3521 1.668826 TCAAATCCTGGTGCTAGGGT 58.331 50.000 1.75 0.00 38.42 4.34
3337 3522 1.281867 TCAAATCCTGGTGCTAGGGTG 59.718 52.381 1.75 0.00 38.42 4.61
3338 3523 1.004745 CAAATCCTGGTGCTAGGGTGT 59.995 52.381 1.75 0.00 38.42 4.16
3339 3524 0.620556 AATCCTGGTGCTAGGGTGTG 59.379 55.000 1.75 0.00 38.42 3.82
3340 3525 0.547712 ATCCTGGTGCTAGGGTGTGT 60.548 55.000 1.75 0.00 38.42 3.72
3341 3526 1.003355 CCTGGTGCTAGGGTGTGTG 60.003 63.158 0.00 0.00 34.06 3.82
3342 3527 1.754745 CTGGTGCTAGGGTGTGTGT 59.245 57.895 0.00 0.00 0.00 3.72
3343 3528 0.603707 CTGGTGCTAGGGTGTGTGTG 60.604 60.000 0.00 0.00 0.00 3.82
3344 3529 1.966451 GGTGCTAGGGTGTGTGTGC 60.966 63.158 0.00 0.00 0.00 4.57
3345 3530 2.030412 TGCTAGGGTGTGTGTGCG 59.970 61.111 0.00 0.00 0.00 5.34
3346 3531 2.030562 GCTAGGGTGTGTGTGCGT 59.969 61.111 0.00 0.00 0.00 5.24
3347 3532 2.317609 GCTAGGGTGTGTGTGCGTG 61.318 63.158 0.00 0.00 0.00 5.34
3348 3533 2.280524 TAGGGTGTGTGTGCGTGC 60.281 61.111 0.00 0.00 0.00 5.34
3351 3536 3.871574 GGTGTGTGTGCGTGCGTT 61.872 61.111 0.00 0.00 0.00 4.84
3352 3537 2.099446 GTGTGTGTGCGTGCGTTT 59.901 55.556 0.00 0.00 0.00 3.60
3353 3538 1.348938 GTGTGTGTGCGTGCGTTTA 59.651 52.632 0.00 0.00 0.00 2.01
3354 3539 0.041663 GTGTGTGTGCGTGCGTTTAT 60.042 50.000 0.00 0.00 0.00 1.40
3355 3540 1.192757 GTGTGTGTGCGTGCGTTTATA 59.807 47.619 0.00 0.00 0.00 0.98
3356 3541 1.457683 TGTGTGTGCGTGCGTTTATAG 59.542 47.619 0.00 0.00 0.00 1.31
3357 3542 1.072391 TGTGTGCGTGCGTTTATAGG 58.928 50.000 0.00 0.00 0.00 2.57
3358 3543 0.372334 GTGTGCGTGCGTTTATAGGG 59.628 55.000 0.00 0.00 0.00 3.53
3359 3544 0.741574 TGTGCGTGCGTTTATAGGGG 60.742 55.000 0.00 0.00 0.00 4.79
3360 3545 0.741927 GTGCGTGCGTTTATAGGGGT 60.742 55.000 0.00 0.00 0.00 4.95
3361 3546 0.741574 TGCGTGCGTTTATAGGGGTG 60.742 55.000 0.00 0.00 0.00 4.61
3362 3547 0.460635 GCGTGCGTTTATAGGGGTGA 60.461 55.000 0.00 0.00 0.00 4.02
3363 3548 1.567504 CGTGCGTTTATAGGGGTGAG 58.432 55.000 0.00 0.00 0.00 3.51
3364 3549 1.134907 CGTGCGTTTATAGGGGTGAGT 60.135 52.381 0.00 0.00 0.00 3.41
3365 3550 2.277084 GTGCGTTTATAGGGGTGAGTG 58.723 52.381 0.00 0.00 0.00 3.51
3366 3551 1.903860 TGCGTTTATAGGGGTGAGTGT 59.096 47.619 0.00 0.00 0.00 3.55
3367 3552 3.098377 TGCGTTTATAGGGGTGAGTGTA 58.902 45.455 0.00 0.00 0.00 2.90
3368 3553 3.707611 TGCGTTTATAGGGGTGAGTGTAT 59.292 43.478 0.00 0.00 0.00 2.29
3369 3554 4.056050 GCGTTTATAGGGGTGAGTGTATG 58.944 47.826 0.00 0.00 0.00 2.39
3370 3555 4.056050 CGTTTATAGGGGTGAGTGTATGC 58.944 47.826 0.00 0.00 0.00 3.14
3371 3556 4.056050 GTTTATAGGGGTGAGTGTATGCG 58.944 47.826 0.00 0.00 0.00 4.73
3372 3557 0.393077 ATAGGGGTGAGTGTATGCGC 59.607 55.000 0.00 0.00 0.00 6.09
3373 3558 2.011741 TAGGGGTGAGTGTATGCGCG 62.012 60.000 0.00 0.00 0.00 6.86
3374 3559 2.125673 GGGTGAGTGTATGCGCGT 60.126 61.111 8.43 7.55 0.00 6.01
3375 3560 2.452813 GGGTGAGTGTATGCGCGTG 61.453 63.158 13.61 0.00 0.00 5.34
3376 3561 1.736645 GGTGAGTGTATGCGCGTGT 60.737 57.895 13.61 0.00 0.00 4.49
3377 3562 0.457166 GGTGAGTGTATGCGCGTGTA 60.457 55.000 13.61 0.00 0.00 2.90
3378 3563 1.556564 GTGAGTGTATGCGCGTGTAT 58.443 50.000 13.61 4.63 0.00 2.29
3379 3564 2.542205 GGTGAGTGTATGCGCGTGTATA 60.542 50.000 13.61 2.40 0.00 1.47
3380 3565 3.110358 GTGAGTGTATGCGCGTGTATAA 58.890 45.455 13.61 0.00 0.00 0.98
3381 3566 3.179795 GTGAGTGTATGCGCGTGTATAAG 59.820 47.826 13.61 0.00 0.00 1.73
3382 3567 2.124903 AGTGTATGCGCGTGTATAAGC 58.875 47.619 13.61 4.95 0.00 3.09
3399 3584 2.222592 GCGTTTGCGTCTGTACTGT 58.777 52.632 0.00 0.00 40.81 3.55
3400 3585 0.111266 GCGTTTGCGTCTGTACTGTG 60.111 55.000 0.00 0.00 40.81 3.66
3401 3586 1.205657 CGTTTGCGTCTGTACTGTGT 58.794 50.000 0.00 0.00 0.00 3.72
3402 3587 1.591158 CGTTTGCGTCTGTACTGTGTT 59.409 47.619 0.00 0.00 0.00 3.32
3403 3588 2.029970 CGTTTGCGTCTGTACTGTGTTT 59.970 45.455 0.00 0.00 0.00 2.83
3404 3589 3.243410 CGTTTGCGTCTGTACTGTGTTTA 59.757 43.478 0.00 0.00 0.00 2.01
3405 3590 4.259890 CGTTTGCGTCTGTACTGTGTTTAA 60.260 41.667 0.00 0.00 0.00 1.52
3406 3591 5.561993 GTTTGCGTCTGTACTGTGTTTAAA 58.438 37.500 0.00 0.00 0.00 1.52
3407 3592 5.798015 TTGCGTCTGTACTGTGTTTAAAA 57.202 34.783 0.00 0.00 0.00 1.52
3408 3593 5.798015 TGCGTCTGTACTGTGTTTAAAAA 57.202 34.783 0.00 0.00 0.00 1.94
3435 3620 9.803315 AAAACTCTCAGAAATAAACAAAGGAAC 57.197 29.630 0.00 0.00 0.00 3.62
3436 3621 7.511959 ACTCTCAGAAATAAACAAAGGAACC 57.488 36.000 0.00 0.00 0.00 3.62
3437 3622 6.204882 ACTCTCAGAAATAAACAAAGGAACCG 59.795 38.462 0.00 0.00 0.00 4.44
3438 3623 6.059484 TCTCAGAAATAAACAAAGGAACCGT 58.941 36.000 0.00 0.00 0.00 4.83
3439 3624 6.017440 TCTCAGAAATAAACAAAGGAACCGTG 60.017 38.462 0.00 0.00 0.00 4.94
3440 3625 5.823570 TCAGAAATAAACAAAGGAACCGTGA 59.176 36.000 0.00 0.00 0.00 4.35
3441 3626 6.319152 TCAGAAATAAACAAAGGAACCGTGAA 59.681 34.615 0.00 0.00 0.00 3.18
3442 3627 6.975772 CAGAAATAAACAAAGGAACCGTGAAA 59.024 34.615 0.00 0.00 0.00 2.69
3443 3628 7.489757 CAGAAATAAACAAAGGAACCGTGAAAA 59.510 33.333 0.00 0.00 0.00 2.29
3444 3629 7.490079 AGAAATAAACAAAGGAACCGTGAAAAC 59.510 33.333 0.00 0.00 0.00 2.43
3445 3630 2.836479 ACAAAGGAACCGTGAAAACG 57.164 45.000 0.00 0.00 0.00 3.60
3454 3639 1.493311 CGTGAAAACGGAGAGCAGC 59.507 57.895 0.00 0.00 0.00 5.25
3455 3640 1.493311 GTGAAAACGGAGAGCAGCG 59.507 57.895 0.00 0.00 0.00 5.18
3456 3641 0.944311 GTGAAAACGGAGAGCAGCGA 60.944 55.000 0.00 0.00 0.00 4.93
3457 3642 0.037326 TGAAAACGGAGAGCAGCGAT 60.037 50.000 0.00 0.00 0.00 4.58
3458 3643 0.371645 GAAAACGGAGAGCAGCGATG 59.628 55.000 0.00 0.00 0.00 3.84
3459 3644 1.021390 AAAACGGAGAGCAGCGATGG 61.021 55.000 1.46 0.00 0.00 3.51
3460 3645 2.172483 AAACGGAGAGCAGCGATGGT 62.172 55.000 4.42 4.42 0.00 3.55
3461 3646 1.320344 AACGGAGAGCAGCGATGGTA 61.320 55.000 4.88 0.00 0.00 3.25
3462 3647 1.299468 CGGAGAGCAGCGATGGTAC 60.299 63.158 4.88 2.99 0.00 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 8.581263 CGATATCAAGAAAAACTGAAGCATTTG 58.419 33.333 3.12 0.00 0.00 2.32
2 3 7.274250 GCGATATCAAGAAAAACTGAAGCATTT 59.726 33.333 3.12 0.00 0.00 2.32
3 4 6.749118 GCGATATCAAGAAAAACTGAAGCATT 59.251 34.615 3.12 0.00 0.00 3.56
4 5 6.127925 TGCGATATCAAGAAAAACTGAAGCAT 60.128 34.615 3.12 0.00 0.00 3.79
6 7 5.509622 GTGCGATATCAAGAAAAACTGAAGC 59.490 40.000 3.12 0.00 0.00 3.86
7 8 6.521133 GTGTGCGATATCAAGAAAAACTGAAG 59.479 38.462 3.12 0.00 0.00 3.02
8 9 6.204688 AGTGTGCGATATCAAGAAAAACTGAA 59.795 34.615 3.12 0.00 0.00 3.02
9 10 5.700832 AGTGTGCGATATCAAGAAAAACTGA 59.299 36.000 3.12 0.00 0.00 3.41
10 11 5.931532 AGTGTGCGATATCAAGAAAAACTG 58.068 37.500 3.12 0.00 0.00 3.16
11 12 6.017109 ACAAGTGTGCGATATCAAGAAAAACT 60.017 34.615 3.12 0.00 0.00 2.66
12 13 6.086765 CACAAGTGTGCGATATCAAGAAAAAC 59.913 38.462 3.12 0.00 39.39 2.43
15 16 5.281693 CACAAGTGTGCGATATCAAGAAA 57.718 39.130 3.12 0.00 39.39 2.52
16 17 4.926860 CACAAGTGTGCGATATCAAGAA 57.073 40.909 3.12 0.00 39.39 2.52
67 68 5.842327 GCGTTTTCTTGCATTTGATTGAAAG 59.158 36.000 0.00 0.00 34.08 2.62
90 91 3.564027 GCGTAGTGGCGTCCATGC 61.564 66.667 1.90 1.92 35.28 4.06
117 118 1.599542 GTACAGGCATGCGAAGATTCC 59.400 52.381 12.44 0.00 0.00 3.01
120 121 0.541392 TGGTACAGGCATGCGAAGAT 59.459 50.000 12.44 0.00 0.00 2.40
121 122 1.979262 TGGTACAGGCATGCGAAGA 59.021 52.632 12.44 0.00 0.00 2.87
166 195 1.880646 CGGGTCGTGGTGGAATTTCTT 60.881 52.381 0.00 0.00 0.00 2.52
167 196 0.321298 CGGGTCGTGGTGGAATTTCT 60.321 55.000 0.00 0.00 0.00 2.52
168 197 0.320946 TCGGGTCGTGGTGGAATTTC 60.321 55.000 0.00 0.00 0.00 2.17
169 198 0.604511 GTCGGGTCGTGGTGGAATTT 60.605 55.000 0.00 0.00 0.00 1.82
170 199 1.004200 GTCGGGTCGTGGTGGAATT 60.004 57.895 0.00 0.00 0.00 2.17
171 200 2.660802 GTCGGGTCGTGGTGGAAT 59.339 61.111 0.00 0.00 0.00 3.01
172 201 3.980989 CGTCGGGTCGTGGTGGAA 61.981 66.667 0.00 0.00 0.00 3.53
216 250 0.693049 TTCTTGGCCTCCTCCTTGAC 59.307 55.000 3.32 0.00 0.00 3.18
218 252 0.695347 ACTTCTTGGCCTCCTCCTTG 59.305 55.000 3.32 0.00 0.00 3.61
284 318 2.433318 GGCAGCGTCTCCACTGTC 60.433 66.667 0.00 0.00 36.26 3.51
310 344 1.683917 GCGTCTCCACTGTCTCCATAT 59.316 52.381 0.00 0.00 0.00 1.78
315 349 1.445238 GCAGCGTCTCCACTGTCTC 60.445 63.158 0.00 0.00 36.26 3.36
317 351 2.433318 GGCAGCGTCTCCACTGTC 60.433 66.667 0.00 0.00 36.26 3.51
320 354 1.376424 CATTGGCAGCGTCTCCACT 60.376 57.895 0.00 0.00 30.97 4.00
345 400 2.866762 CCTTACGAGCAAGACATTAGGC 59.133 50.000 0.00 0.00 0.00 3.93
346 401 4.124851 ACCTTACGAGCAAGACATTAGG 57.875 45.455 0.00 0.00 0.00 2.69
347 402 6.132791 TCTACCTTACGAGCAAGACATTAG 57.867 41.667 0.00 0.00 0.00 1.73
348 403 5.067413 CCTCTACCTTACGAGCAAGACATTA 59.933 44.000 0.00 0.00 0.00 1.90
350 405 3.381908 CCTCTACCTTACGAGCAAGACAT 59.618 47.826 0.00 0.00 0.00 3.06
351 406 2.753452 CCTCTACCTTACGAGCAAGACA 59.247 50.000 0.00 0.00 0.00 3.41
352 407 3.015327 TCCTCTACCTTACGAGCAAGAC 58.985 50.000 0.00 0.00 0.00 3.01
353 408 3.054582 TCTCCTCTACCTTACGAGCAAGA 60.055 47.826 0.00 0.00 0.00 3.02
354 409 3.280295 TCTCCTCTACCTTACGAGCAAG 58.720 50.000 0.00 0.00 0.00 4.01
355 410 3.361281 TCTCCTCTACCTTACGAGCAA 57.639 47.619 0.00 0.00 0.00 3.91
356 411 3.579534 ATCTCCTCTACCTTACGAGCA 57.420 47.619 0.00 0.00 0.00 4.26
357 412 3.884091 TCAATCTCCTCTACCTTACGAGC 59.116 47.826 0.00 0.00 0.00 5.03
358 413 4.517453 CCTCAATCTCCTCTACCTTACGAG 59.483 50.000 0.00 0.00 0.00 4.18
360 415 4.208746 ACCTCAATCTCCTCTACCTTACG 58.791 47.826 0.00 0.00 0.00 3.18
361 416 5.163395 CCAACCTCAATCTCCTCTACCTTAC 60.163 48.000 0.00 0.00 0.00 2.34
362 417 4.962995 CCAACCTCAATCTCCTCTACCTTA 59.037 45.833 0.00 0.00 0.00 2.69
366 421 2.158885 GCCCAACCTCAATCTCCTCTAC 60.159 54.545 0.00 0.00 0.00 2.59
367 422 2.119495 GCCCAACCTCAATCTCCTCTA 58.881 52.381 0.00 0.00 0.00 2.43
368 423 0.915364 GCCCAACCTCAATCTCCTCT 59.085 55.000 0.00 0.00 0.00 3.69
369 424 0.620556 TGCCCAACCTCAATCTCCTC 59.379 55.000 0.00 0.00 0.00 3.71
370 425 0.329596 GTGCCCAACCTCAATCTCCT 59.670 55.000 0.00 0.00 0.00 3.69
371 426 1.026718 CGTGCCCAACCTCAATCTCC 61.027 60.000 0.00 0.00 0.00 3.71
372 427 1.026718 CCGTGCCCAACCTCAATCTC 61.027 60.000 0.00 0.00 0.00 2.75
373 428 1.002134 CCGTGCCCAACCTCAATCT 60.002 57.895 0.00 0.00 0.00 2.40
374 429 0.394352 ATCCGTGCCCAACCTCAATC 60.394 55.000 0.00 0.00 0.00 2.67
375 430 0.916086 TATCCGTGCCCAACCTCAAT 59.084 50.000 0.00 0.00 0.00 2.57
376 431 0.251916 CTATCCGTGCCCAACCTCAA 59.748 55.000 0.00 0.00 0.00 3.02
377 432 1.904771 CTATCCGTGCCCAACCTCA 59.095 57.895 0.00 0.00 0.00 3.86
378 433 1.523938 GCTATCCGTGCCCAACCTC 60.524 63.158 0.00 0.00 0.00 3.85
379 434 0.689745 TAGCTATCCGTGCCCAACCT 60.690 55.000 0.00 0.00 0.00 3.50
380 435 0.249911 CTAGCTATCCGTGCCCAACC 60.250 60.000 0.00 0.00 0.00 3.77
381 436 0.464452 ACTAGCTATCCGTGCCCAAC 59.536 55.000 0.00 0.00 0.00 3.77
382 437 1.200519 AACTAGCTATCCGTGCCCAA 58.799 50.000 0.00 0.00 0.00 4.12
383 438 2.076207 TAACTAGCTATCCGTGCCCA 57.924 50.000 0.00 0.00 0.00 5.36
384 439 2.866855 GCTTAACTAGCTATCCGTGCCC 60.867 54.545 0.00 0.00 46.77 5.36
385 440 2.405172 GCTTAACTAGCTATCCGTGCC 58.595 52.381 0.00 0.00 46.77 5.01
395 450 6.004417 GCACGTCTGCTTAGCTTAACTAGC 62.004 50.000 5.60 4.37 44.38 3.42
396 451 3.548268 GCACGTCTGCTTAGCTTAACTAG 59.452 47.826 5.60 0.00 40.63 2.57
397 452 3.508762 GCACGTCTGCTTAGCTTAACTA 58.491 45.455 5.60 0.00 40.63 2.24
398 453 2.338500 GCACGTCTGCTTAGCTTAACT 58.662 47.619 5.60 0.00 40.63 2.24
399 454 2.789569 GCACGTCTGCTTAGCTTAAC 57.210 50.000 5.60 0.09 40.63 2.01
413 468 1.139095 GCTCTACGGCTTAGCACGT 59.861 57.895 20.29 20.29 46.17 4.49
429 484 7.492352 AACAAAACTAAGTAATCGAAGTGCT 57.508 32.000 0.00 0.00 0.00 4.40
457 512 5.367060 GGGAAGACCTGTATATGGAAGAACT 59.633 44.000 2.30 0.00 35.85 3.01
458 513 5.454897 GGGGAAGACCTGTATATGGAAGAAC 60.455 48.000 2.30 0.00 40.03 3.01
465 520 2.907042 GGAGGGGGAAGACCTGTATATG 59.093 54.545 0.00 0.00 38.79 1.78
466 521 2.157989 GGGAGGGGGAAGACCTGTATAT 60.158 54.545 0.00 0.00 38.79 0.86
467 522 1.222298 GGGAGGGGGAAGACCTGTATA 59.778 57.143 0.00 0.00 38.79 1.47
468 523 0.029989 GGGAGGGGGAAGACCTGTAT 60.030 60.000 0.00 0.00 38.79 2.29
476 531 1.380302 CAACACAGGGAGGGGGAAG 59.620 63.158 0.00 0.00 0.00 3.46
482 537 5.245526 AGTTTACTACTACAACACAGGGAGG 59.754 44.000 0.00 0.00 34.56 4.30
519 577 6.150474 CGATTTATAACTTGGGTTTCCAGTGT 59.850 38.462 0.00 0.00 45.04 3.55
524 582 6.151480 TGGTTCGATTTATAACTTGGGTTTCC 59.849 38.462 0.00 0.00 36.92 3.13
545 603 5.690865 TCTGTTGTAAGAGTGGATTTGGTT 58.309 37.500 0.00 0.00 0.00 3.67
556 614 8.660373 GGTTTCTGATGTAATCTGTTGTAAGAG 58.340 37.037 0.00 0.00 45.81 2.85
558 616 8.446273 CAGGTTTCTGATGTAATCTGTTGTAAG 58.554 37.037 0.00 0.00 45.81 2.34
721 779 0.106217 ATTATTGGCCAAGGACCCCG 60.106 55.000 24.94 0.00 0.00 5.73
727 785 8.006298 TGTGTAATCTTTATTATTGGCCAAGG 57.994 34.615 24.94 0.00 30.42 3.61
768 829 3.256383 CCACCTGAAAGTCAATGCATTCA 59.744 43.478 9.53 3.33 0.00 2.57
770 831 2.564062 CCCACCTGAAAGTCAATGCATT 59.436 45.455 5.99 5.99 0.00 3.56
773 834 0.890683 CCCCACCTGAAAGTCAATGC 59.109 55.000 0.00 0.00 0.00 3.56
837 898 4.368808 CGACACACGGCGGCAAAG 62.369 66.667 13.24 0.00 38.46 2.77
864 925 5.197549 CAAACTATTGACGGCGATATGTTG 58.802 41.667 16.62 9.35 38.94 3.33
1302 1379 5.386958 AGTTGTTGCTAGATGAGTCGTTA 57.613 39.130 0.00 0.00 0.00 3.18
1564 1642 4.873817 TGAAAATCATTGTGCTCCAACAG 58.126 39.130 0.00 0.00 35.44 3.16
2013 2105 2.168106 TGTGCAACTGATTGGCAAACTT 59.832 40.909 3.01 0.00 38.04 2.66
2141 2233 7.086376 CACCATGTATGAAGAGGTTTCTTTTG 58.914 38.462 0.00 0.00 43.63 2.44
2177 2269 1.075374 AGGCCTTGTTCCATAAGCACA 59.925 47.619 0.00 0.00 0.00 4.57
2257 2349 6.830324 TGGTGATTTCTCCTTGATTGGAATAG 59.170 38.462 0.84 0.00 35.43 1.73
2351 2443 4.597507 TGAGGGGGTATCCTTGATTCATAC 59.402 45.833 0.00 0.00 37.25 2.39
2428 2520 3.577919 CTCCCTGGCAAGGTACTACTAT 58.422 50.000 6.34 0.00 42.74 2.12
2473 2565 4.301637 ACACGAGTCCCAAAACAAAATC 57.698 40.909 0.00 0.00 0.00 2.17
2618 2737 9.860898 GTCTATGCCTTATTCTGAAATTTGTTT 57.139 29.630 0.00 0.00 0.00 2.83
2621 2740 7.068593 TGGGTCTATGCCTTATTCTGAAATTTG 59.931 37.037 0.00 0.00 0.00 2.32
2667 2786 3.404899 TGGGTTGGTTCACGTCTATTTC 58.595 45.455 0.00 0.00 0.00 2.17
2688 2810 9.293404 CCATTGTTCATCTAACCATCTAATCAT 57.707 33.333 0.00 0.00 37.27 2.45
2738 2861 2.969238 GAGCCGGCACATCATCGG 60.969 66.667 31.54 0.00 45.84 4.18
2779 2902 0.670546 GCACGCACACACATCCTACT 60.671 55.000 0.00 0.00 0.00 2.57
2817 2940 6.833839 TGTTTTTATCATAGTACAACCGCAC 58.166 36.000 0.00 0.00 0.00 5.34
2894 3024 2.932614 AGCTGTCATACGCAAGATCAAC 59.067 45.455 0.00 0.00 43.62 3.18
2983 3132 0.521291 CAATCAAATCACGTGCGGGT 59.479 50.000 11.67 0.00 0.00 5.28
2989 3138 8.656849 GTTCTAGTTCATACAATCAAATCACGT 58.343 33.333 0.00 0.00 0.00 4.49
3096 3280 5.337491 GGTCCACTTAACATGCATGGAAAAT 60.337 40.000 29.41 11.11 41.05 1.82
3141 3326 2.754648 GCGCACAGCTTATCTCACA 58.245 52.632 0.30 0.00 44.04 3.58
3152 3337 0.742505 AATTGATCCCATGCGCACAG 59.257 50.000 14.90 8.78 0.00 3.66
3185 3370 0.595588 TCAAACATGCACGCGGAAAT 59.404 45.000 12.47 0.00 0.00 2.17
3189 3374 1.514657 CCATCAAACATGCACGCGG 60.515 57.895 12.47 0.00 0.00 6.46
3191 3376 1.806758 GCCCATCAAACATGCACGC 60.807 57.895 0.00 0.00 0.00 5.34
3193 3378 0.609662 AAGGCCCATCAAACATGCAC 59.390 50.000 0.00 0.00 0.00 4.57
3214 3399 8.552083 TTAACATGCACATATATCACCTCATC 57.448 34.615 0.00 0.00 0.00 2.92
3249 3434 5.833406 ACAAATTGGTTCGCATGATGATA 57.167 34.783 0.00 0.00 0.00 2.15
3254 3439 4.320861 CCAACTACAAATTGGTTCGCATGA 60.321 41.667 0.00 0.00 41.55 3.07
3255 3440 3.919804 CCAACTACAAATTGGTTCGCATG 59.080 43.478 0.00 0.00 41.55 4.06
3256 3441 3.056891 CCCAACTACAAATTGGTTCGCAT 60.057 43.478 0.00 0.00 44.46 4.73
3257 3442 2.294791 CCCAACTACAAATTGGTTCGCA 59.705 45.455 0.00 0.00 44.46 5.10
3258 3443 2.295070 ACCCAACTACAAATTGGTTCGC 59.705 45.455 0.00 0.00 44.46 4.70
3259 3444 3.305064 CCACCCAACTACAAATTGGTTCG 60.305 47.826 0.00 0.00 44.46 3.95
3260 3445 3.639561 ACCACCCAACTACAAATTGGTTC 59.360 43.478 0.00 0.00 44.46 3.62
3261 3446 3.648739 ACCACCCAACTACAAATTGGTT 58.351 40.909 0.00 0.00 44.46 3.67
3262 3447 3.322191 ACCACCCAACTACAAATTGGT 57.678 42.857 0.00 0.00 44.46 3.67
3263 3448 5.074115 TCTAACCACCCAACTACAAATTGG 58.926 41.667 0.00 0.00 45.36 3.16
3264 3449 5.183140 CCTCTAACCACCCAACTACAAATTG 59.817 44.000 0.00 0.00 0.00 2.32
3265 3450 5.321927 CCTCTAACCACCCAACTACAAATT 58.678 41.667 0.00 0.00 0.00 1.82
3266 3451 4.263771 CCCTCTAACCACCCAACTACAAAT 60.264 45.833 0.00 0.00 0.00 2.32
3267 3452 3.073356 CCCTCTAACCACCCAACTACAAA 59.927 47.826 0.00 0.00 0.00 2.83
3268 3453 2.640826 CCCTCTAACCACCCAACTACAA 59.359 50.000 0.00 0.00 0.00 2.41
3269 3454 2.158127 TCCCTCTAACCACCCAACTACA 60.158 50.000 0.00 0.00 0.00 2.74
3270 3455 2.235650 GTCCCTCTAACCACCCAACTAC 59.764 54.545 0.00 0.00 0.00 2.73
3271 3456 2.113052 AGTCCCTCTAACCACCCAACTA 59.887 50.000 0.00 0.00 0.00 2.24
3272 3457 1.132495 AGTCCCTCTAACCACCCAACT 60.132 52.381 0.00 0.00 0.00 3.16
3273 3458 1.003233 CAGTCCCTCTAACCACCCAAC 59.997 57.143 0.00 0.00 0.00 3.77
3274 3459 1.358152 CAGTCCCTCTAACCACCCAA 58.642 55.000 0.00 0.00 0.00 4.12
3275 3460 0.192566 ACAGTCCCTCTAACCACCCA 59.807 55.000 0.00 0.00 0.00 4.51
3276 3461 0.613777 CACAGTCCCTCTAACCACCC 59.386 60.000 0.00 0.00 0.00 4.61
3277 3462 1.640917 TCACAGTCCCTCTAACCACC 58.359 55.000 0.00 0.00 0.00 4.61
3278 3463 5.364157 AGAATATCACAGTCCCTCTAACCAC 59.636 44.000 0.00 0.00 0.00 4.16
3279 3464 5.529289 AGAATATCACAGTCCCTCTAACCA 58.471 41.667 0.00 0.00 0.00 3.67
3280 3465 6.487299 AAGAATATCACAGTCCCTCTAACC 57.513 41.667 0.00 0.00 0.00 2.85
3281 3466 7.927092 GGTTAAGAATATCACAGTCCCTCTAAC 59.073 40.741 0.00 0.00 0.00 2.34
3282 3467 7.070821 GGGTTAAGAATATCACAGTCCCTCTAA 59.929 40.741 0.00 0.00 0.00 2.10
3283 3468 6.553852 GGGTTAAGAATATCACAGTCCCTCTA 59.446 42.308 0.00 0.00 0.00 2.43
3284 3469 5.367060 GGGTTAAGAATATCACAGTCCCTCT 59.633 44.000 0.00 0.00 0.00 3.69
3285 3470 5.130477 TGGGTTAAGAATATCACAGTCCCTC 59.870 44.000 0.00 0.00 33.15 4.30
3286 3471 5.036916 TGGGTTAAGAATATCACAGTCCCT 58.963 41.667 0.00 0.00 33.15 4.20
3287 3472 5.367945 TGGGTTAAGAATATCACAGTCCC 57.632 43.478 0.00 0.00 0.00 4.46
3288 3473 6.591935 TGATGGGTTAAGAATATCACAGTCC 58.408 40.000 0.00 0.00 0.00 3.85
3289 3474 6.708054 CCTGATGGGTTAAGAATATCACAGTC 59.292 42.308 0.00 0.00 0.00 3.51
3290 3475 6.595682 CCTGATGGGTTAAGAATATCACAGT 58.404 40.000 0.00 0.00 0.00 3.55
3312 3497 0.779997 AGCACCAGGATTTGAACCCT 59.220 50.000 0.00 0.00 0.00 4.34
3313 3498 2.369394 CTAGCACCAGGATTTGAACCC 58.631 52.381 0.00 0.00 0.00 4.11
3314 3499 2.369394 CCTAGCACCAGGATTTGAACC 58.631 52.381 0.00 0.00 38.00 3.62
3315 3500 2.290960 ACCCTAGCACCAGGATTTGAAC 60.291 50.000 0.00 0.00 38.00 3.18
3316 3501 1.992557 ACCCTAGCACCAGGATTTGAA 59.007 47.619 0.00 0.00 38.00 2.69
3317 3502 1.281867 CACCCTAGCACCAGGATTTGA 59.718 52.381 0.00 0.00 38.00 2.69
3318 3503 1.004745 ACACCCTAGCACCAGGATTTG 59.995 52.381 0.00 0.00 38.00 2.32
3319 3504 1.004745 CACACCCTAGCACCAGGATTT 59.995 52.381 0.00 0.00 38.00 2.17
3320 3505 0.620556 CACACCCTAGCACCAGGATT 59.379 55.000 0.00 0.00 38.00 3.01
3321 3506 0.547712 ACACACCCTAGCACCAGGAT 60.548 55.000 0.00 0.00 38.00 3.24
3322 3507 1.152118 ACACACCCTAGCACCAGGA 60.152 57.895 0.00 0.00 38.00 3.86
3323 3508 1.003355 CACACACCCTAGCACCAGG 60.003 63.158 0.00 0.00 35.26 4.45
3324 3509 0.603707 CACACACACCCTAGCACCAG 60.604 60.000 0.00 0.00 0.00 4.00
3325 3510 1.449782 CACACACACCCTAGCACCA 59.550 57.895 0.00 0.00 0.00 4.17
3326 3511 1.966451 GCACACACACCCTAGCACC 60.966 63.158 0.00 0.00 0.00 5.01
3327 3512 2.317609 CGCACACACACCCTAGCAC 61.318 63.158 0.00 0.00 0.00 4.40
3328 3513 2.030412 CGCACACACACCCTAGCA 59.970 61.111 0.00 0.00 0.00 3.49
3329 3514 2.030562 ACGCACACACACCCTAGC 59.969 61.111 0.00 0.00 0.00 3.42
3330 3515 2.317609 GCACGCACACACACCCTAG 61.318 63.158 0.00 0.00 0.00 3.02
3331 3516 2.280524 GCACGCACACACACCCTA 60.281 61.111 0.00 0.00 0.00 3.53
3334 3519 2.037913 TAAACGCACGCACACACACC 62.038 55.000 0.00 0.00 0.00 4.16
3335 3520 0.041663 ATAAACGCACGCACACACAC 60.042 50.000 0.00 0.00 0.00 3.82
3336 3521 1.457683 CTATAAACGCACGCACACACA 59.542 47.619 0.00 0.00 0.00 3.72
3337 3522 1.201877 CCTATAAACGCACGCACACAC 60.202 52.381 0.00 0.00 0.00 3.82
3338 3523 1.072391 CCTATAAACGCACGCACACA 58.928 50.000 0.00 0.00 0.00 3.72
3339 3524 0.372334 CCCTATAAACGCACGCACAC 59.628 55.000 0.00 0.00 0.00 3.82
3340 3525 0.741574 CCCCTATAAACGCACGCACA 60.742 55.000 0.00 0.00 0.00 4.57
3341 3526 0.741927 ACCCCTATAAACGCACGCAC 60.742 55.000 0.00 0.00 0.00 5.34
3342 3527 0.741574 CACCCCTATAAACGCACGCA 60.742 55.000 0.00 0.00 0.00 5.24
3343 3528 0.460635 TCACCCCTATAAACGCACGC 60.461 55.000 0.00 0.00 0.00 5.34
3344 3529 1.134907 ACTCACCCCTATAAACGCACG 60.135 52.381 0.00 0.00 0.00 5.34
3345 3530 2.277084 CACTCACCCCTATAAACGCAC 58.723 52.381 0.00 0.00 0.00 5.34
3346 3531 1.903860 ACACTCACCCCTATAAACGCA 59.096 47.619 0.00 0.00 0.00 5.24
3347 3532 2.685850 ACACTCACCCCTATAAACGC 57.314 50.000 0.00 0.00 0.00 4.84
3348 3533 4.056050 GCATACACTCACCCCTATAAACG 58.944 47.826 0.00 0.00 0.00 3.60
3349 3534 4.056050 CGCATACACTCACCCCTATAAAC 58.944 47.826 0.00 0.00 0.00 2.01
3350 3535 3.493699 GCGCATACACTCACCCCTATAAA 60.494 47.826 0.30 0.00 0.00 1.40
3351 3536 2.036733 GCGCATACACTCACCCCTATAA 59.963 50.000 0.30 0.00 0.00 0.98
3352 3537 1.616865 GCGCATACACTCACCCCTATA 59.383 52.381 0.30 0.00 0.00 1.31
3353 3538 0.393077 GCGCATACACTCACCCCTAT 59.607 55.000 0.30 0.00 0.00 2.57
3354 3539 1.820581 GCGCATACACTCACCCCTA 59.179 57.895 0.30 0.00 0.00 3.53
3355 3540 2.584608 GCGCATACACTCACCCCT 59.415 61.111 0.30 0.00 0.00 4.79
3356 3541 2.890474 CGCGCATACACTCACCCC 60.890 66.667 8.75 0.00 0.00 4.95
3357 3542 2.125673 ACGCGCATACACTCACCC 60.126 61.111 5.73 0.00 0.00 4.61
3358 3543 0.457166 TACACGCGCATACACTCACC 60.457 55.000 5.73 0.00 0.00 4.02
3359 3544 1.556564 ATACACGCGCATACACTCAC 58.443 50.000 5.73 0.00 0.00 3.51
3360 3545 3.368495 CTTATACACGCGCATACACTCA 58.632 45.455 5.73 0.00 0.00 3.41
3361 3546 2.153247 GCTTATACACGCGCATACACTC 59.847 50.000 5.73 0.00 0.00 3.51
3362 3547 2.124903 GCTTATACACGCGCATACACT 58.875 47.619 5.73 0.00 0.00 3.55
3363 3548 1.136992 CGCTTATACACGCGCATACAC 60.137 52.381 5.73 0.00 43.01 2.90
3364 3549 1.125270 CGCTTATACACGCGCATACA 58.875 50.000 5.73 0.00 43.01 2.29
3365 3550 3.901225 CGCTTATACACGCGCATAC 57.099 52.632 5.73 0.00 43.01 2.39
3371 3556 0.094046 ACGCAAACGCTTATACACGC 59.906 50.000 0.00 0.00 45.53 5.34
3372 3557 1.652124 AGACGCAAACGCTTATACACG 59.348 47.619 0.00 0.00 45.53 4.49
3373 3558 2.410730 ACAGACGCAAACGCTTATACAC 59.589 45.455 0.00 0.00 45.53 2.90
3374 3559 2.679450 ACAGACGCAAACGCTTATACA 58.321 42.857 0.00 0.00 45.53 2.29
3375 3560 3.855950 AGTACAGACGCAAACGCTTATAC 59.144 43.478 0.00 0.00 45.53 1.47
3376 3561 3.855379 CAGTACAGACGCAAACGCTTATA 59.145 43.478 0.00 0.00 45.53 0.98
3377 3562 2.666508 CAGTACAGACGCAAACGCTTAT 59.333 45.455 0.00 0.00 45.53 1.73
3378 3563 2.055838 CAGTACAGACGCAAACGCTTA 58.944 47.619 0.00 0.00 45.53 3.09
3379 3564 0.859232 CAGTACAGACGCAAACGCTT 59.141 50.000 0.00 0.00 45.53 4.68
3380 3565 0.249322 ACAGTACAGACGCAAACGCT 60.249 50.000 0.00 0.00 45.53 5.07
3381 3566 0.111266 CACAGTACAGACGCAAACGC 60.111 55.000 0.00 0.00 45.53 4.84
3383 3568 3.668596 AAACACAGTACAGACGCAAAC 57.331 42.857 0.00 0.00 0.00 2.93
3384 3569 5.798015 TTTAAACACAGTACAGACGCAAA 57.202 34.783 0.00 0.00 0.00 3.68
3385 3570 5.798015 TTTTAAACACAGTACAGACGCAA 57.202 34.783 0.00 0.00 0.00 4.85
3386 3571 5.798015 TTTTTAAACACAGTACAGACGCA 57.202 34.783 0.00 0.00 0.00 5.24
3409 3594 9.803315 GTTCCTTTGTTTATTTCTGAGAGTTTT 57.197 29.630 0.00 0.00 0.00 2.43
3410 3595 8.414003 GGTTCCTTTGTTTATTTCTGAGAGTTT 58.586 33.333 0.00 0.00 0.00 2.66
3411 3596 7.255139 CGGTTCCTTTGTTTATTTCTGAGAGTT 60.255 37.037 0.00 0.00 0.00 3.01
3412 3597 6.204882 CGGTTCCTTTGTTTATTTCTGAGAGT 59.795 38.462 0.00 0.00 0.00 3.24
3413 3598 6.204882 ACGGTTCCTTTGTTTATTTCTGAGAG 59.795 38.462 0.00 0.00 0.00 3.20
3414 3599 6.017440 CACGGTTCCTTTGTTTATTTCTGAGA 60.017 38.462 0.00 0.00 0.00 3.27
3415 3600 6.017440 TCACGGTTCCTTTGTTTATTTCTGAG 60.017 38.462 0.00 0.00 0.00 3.35
3416 3601 5.823570 TCACGGTTCCTTTGTTTATTTCTGA 59.176 36.000 0.00 0.00 0.00 3.27
3417 3602 6.067263 TCACGGTTCCTTTGTTTATTTCTG 57.933 37.500 0.00 0.00 0.00 3.02
3418 3603 6.702716 TTCACGGTTCCTTTGTTTATTTCT 57.297 33.333 0.00 0.00 0.00 2.52
3419 3604 7.513969 CGTTTTCACGGTTCCTTTGTTTATTTC 60.514 37.037 0.00 0.00 43.16 2.17
3420 3605 6.253942 CGTTTTCACGGTTCCTTTGTTTATTT 59.746 34.615 0.00 0.00 43.16 1.40
3421 3606 5.744819 CGTTTTCACGGTTCCTTTGTTTATT 59.255 36.000 0.00 0.00 43.16 1.40
3422 3607 5.275494 CGTTTTCACGGTTCCTTTGTTTAT 58.725 37.500 0.00 0.00 43.16 1.40
3423 3608 4.660105 CGTTTTCACGGTTCCTTTGTTTA 58.340 39.130 0.00 0.00 43.16 2.01
3424 3609 3.503891 CGTTTTCACGGTTCCTTTGTTT 58.496 40.909 0.00 0.00 43.16 2.83
3425 3610 3.139603 CGTTTTCACGGTTCCTTTGTT 57.860 42.857 0.00 0.00 43.16 2.83
3426 3611 2.836479 CGTTTTCACGGTTCCTTTGT 57.164 45.000 0.00 0.00 43.16 2.83
3436 3621 1.493311 GCTGCTCTCCGTTTTCACG 59.507 57.895 0.00 0.00 46.71 4.35
3437 3622 0.944311 TCGCTGCTCTCCGTTTTCAC 60.944 55.000 0.00 0.00 0.00 3.18
3438 3623 0.037326 ATCGCTGCTCTCCGTTTTCA 60.037 50.000 0.00 0.00 0.00 2.69
3439 3624 0.371645 CATCGCTGCTCTCCGTTTTC 59.628 55.000 0.00 0.00 0.00 2.29
3440 3625 1.021390 CCATCGCTGCTCTCCGTTTT 61.021 55.000 0.00 0.00 0.00 2.43
3441 3626 1.448540 CCATCGCTGCTCTCCGTTT 60.449 57.895 0.00 0.00 0.00 3.60
3442 3627 1.320344 TACCATCGCTGCTCTCCGTT 61.320 55.000 0.00 0.00 0.00 4.44
3443 3628 1.753078 TACCATCGCTGCTCTCCGT 60.753 57.895 0.00 0.00 0.00 4.69
3444 3629 1.299468 GTACCATCGCTGCTCTCCG 60.299 63.158 0.00 0.00 0.00 4.63
3445 3630 0.390860 ATGTACCATCGCTGCTCTCC 59.609 55.000 0.00 0.00 0.00 3.71
3446 3631 2.667137 GTATGTACCATCGCTGCTCTC 58.333 52.381 0.00 0.00 0.00 3.20
3447 3632 1.001268 CGTATGTACCATCGCTGCTCT 60.001 52.381 0.00 0.00 0.00 4.09
3448 3633 1.001706 TCGTATGTACCATCGCTGCTC 60.002 52.381 0.00 0.00 0.00 4.26
3449 3634 1.001268 CTCGTATGTACCATCGCTGCT 60.001 52.381 0.00 0.00 0.00 4.24
3450 3635 1.409412 CTCGTATGTACCATCGCTGC 58.591 55.000 0.00 0.00 0.00 5.25
3451 3636 1.001268 AGCTCGTATGTACCATCGCTG 60.001 52.381 0.00 0.00 0.00 5.18
3452 3637 1.267261 GAGCTCGTATGTACCATCGCT 59.733 52.381 0.00 0.00 0.00 4.93
3453 3638 1.687628 GAGCTCGTATGTACCATCGC 58.312 55.000 0.00 0.00 0.00 4.58
3454 3639 1.951792 CGAGCTCGTATGTACCATCG 58.048 55.000 27.79 0.00 34.11 3.84
3455 3640 1.687628 GCGAGCTCGTATGTACCATC 58.312 55.000 34.46 12.23 42.22 3.51
3456 3641 3.867723 GCGAGCTCGTATGTACCAT 57.132 52.632 34.46 0.00 42.22 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.