Multiple sequence alignment - TraesCS2B01G026300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G026300 chr2B 100.000 2141 0 0 1 2141 12081953 12079813 0 3954
1 TraesCS2B01G026300 chr2B 92.308 871 67 0 1271 2141 23573924 23573054 0 1238
2 TraesCS2B01G026300 chr2B 90.018 541 31 16 723 1262 23574389 23573871 0 678
3 TraesCS2B01G026300 chr6A 88.313 1138 129 4 3 1138 22812065 22810930 0 1362
4 TraesCS2B01G026300 chr6A 86.531 787 102 4 1357 2141 22810677 22809893 0 863
5 TraesCS2B01G026300 chr3A 88.475 1128 126 3 13 1138 20214245 20213120 0 1360
6 TraesCS2B01G026300 chr3A 88.199 1127 131 2 13 1138 644712975 644711850 0 1343
7 TraesCS2B01G026300 chr1D 88.021 1127 132 3 13 1138 95706160 95705036 0 1330
8 TraesCS2B01G026300 chr4B 92.849 895 62 2 1242 2136 9013139 9014031 0 1297
9 TraesCS2B01G026300 chr4D 87.170 1138 142 4 3 1138 507729664 507730799 0 1290
10 TraesCS2B01G026300 chr6D 87.344 1122 138 4 32 1150 469086171 469085051 0 1282
11 TraesCS2B01G026300 chr6D 85.530 774 110 2 1369 2141 469084806 469084034 0 808
12 TraesCS2B01G026300 chr3D 86.907 1138 144 5 16 1150 496841940 496840805 0 1271
13 TraesCS2B01G026300 chr3D 85.401 774 111 2 1369 2141 496840560 496839788 0 802
14 TraesCS2B01G026300 chr7D 86.819 1138 146 4 16 1150 52091306 52092442 0 1267
15 TraesCS2B01G026300 chr7D 86.115 785 102 4 1358 2141 2485495 2484717 0 839
16 TraesCS2B01G026300 chr6B 86.731 1138 147 4 16 1150 63422657 63421521 0 1262
17 TraesCS2B01G026300 chr6B 85.987 785 108 2 1358 2141 666795517 666794734 0 839
18 TraesCS2B01G026300 chr6B 85.788 774 108 2 1369 2141 63421276 63420504 0 819
19 TraesCS2B01G026300 chr7B 85.824 783 108 3 1358 2138 34223527 34224308 0 828


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G026300 chr2B 12079813 12081953 2140 True 3954.0 3954 100.0000 1 2141 1 chr2B.!!$R1 2140
1 TraesCS2B01G026300 chr2B 23573054 23574389 1335 True 958.0 1238 91.1630 723 2141 2 chr2B.!!$R2 1418
2 TraesCS2B01G026300 chr6A 22809893 22812065 2172 True 1112.5 1362 87.4220 3 2141 2 chr6A.!!$R1 2138
3 TraesCS2B01G026300 chr3A 20213120 20214245 1125 True 1360.0 1360 88.4750 13 1138 1 chr3A.!!$R1 1125
4 TraesCS2B01G026300 chr3A 644711850 644712975 1125 True 1343.0 1343 88.1990 13 1138 1 chr3A.!!$R2 1125
5 TraesCS2B01G026300 chr1D 95705036 95706160 1124 True 1330.0 1330 88.0210 13 1138 1 chr1D.!!$R1 1125
6 TraesCS2B01G026300 chr4B 9013139 9014031 892 False 1297.0 1297 92.8490 1242 2136 1 chr4B.!!$F1 894
7 TraesCS2B01G026300 chr4D 507729664 507730799 1135 False 1290.0 1290 87.1700 3 1138 1 chr4D.!!$F1 1135
8 TraesCS2B01G026300 chr6D 469084034 469086171 2137 True 1045.0 1282 86.4370 32 2141 2 chr6D.!!$R1 2109
9 TraesCS2B01G026300 chr3D 496839788 496841940 2152 True 1036.5 1271 86.1540 16 2141 2 chr3D.!!$R1 2125
10 TraesCS2B01G026300 chr7D 52091306 52092442 1136 False 1267.0 1267 86.8190 16 1150 1 chr7D.!!$F1 1134
11 TraesCS2B01G026300 chr7D 2484717 2485495 778 True 839.0 839 86.1150 1358 2141 1 chr7D.!!$R1 783
12 TraesCS2B01G026300 chr6B 63420504 63422657 2153 True 1040.5 1262 86.2595 16 2141 2 chr6B.!!$R2 2125
13 TraesCS2B01G026300 chr6B 666794734 666795517 783 True 839.0 839 85.9870 1358 2141 1 chr6B.!!$R1 783
14 TraesCS2B01G026300 chr7B 34223527 34224308 781 False 828.0 828 85.8240 1358 2138 1 chr7B.!!$F1 780

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
523 524 0.397941 CAGGTGCTCCAGGTTTCAGA 59.602 55.0 7.7 0.0 35.89 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2075 2154 1.002502 CCTTTCCCGACCTTCCACC 60.003 63.158 0.0 0.0 0.0 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.808414 TGGTGGACTTGTAGATTCAGAG 57.192 45.455 0.00 0.00 0.00 3.35
26 27 4.081972 TGGACTTGTAGATTCAGAGAGTGC 60.082 45.833 0.00 0.00 0.00 4.40
28 29 5.337169 GGACTTGTAGATTCAGAGAGTGCTT 60.337 44.000 0.00 0.00 0.00 3.91
30 31 6.626302 ACTTGTAGATTCAGAGAGTGCTTAC 58.374 40.000 0.00 0.00 0.00 2.34
49 50 5.800438 GCTTACGATGATAGCGATTATGTGA 59.200 40.000 0.00 0.00 0.00 3.58
63 64 6.450545 CGATTATGTGACAGGTAGTGATGAT 58.549 40.000 0.00 0.00 0.00 2.45
148 149 3.361786 AGAGACTCTAAGAAGTGGGCTC 58.638 50.000 2.19 0.00 34.34 4.70
160 161 3.806949 AGTGGGCTCAAAGTAATCCAA 57.193 42.857 0.00 0.00 0.00 3.53
219 220 8.646900 GTGGAAGAAGTGATAGGAGAAGATTAT 58.353 37.037 0.00 0.00 0.00 1.28
282 283 4.139038 CAGATGATGATGGCCATGTTGTA 58.861 43.478 26.56 5.82 35.17 2.41
337 338 6.467677 CCAAAGACAGAGATTCCTACTTTCA 58.532 40.000 0.00 0.00 0.00 2.69
350 351 5.497474 TCCTACTTTCAGTTTAGGAATGGC 58.503 41.667 0.00 0.00 31.75 4.40
360 361 4.043435 AGTTTAGGAATGGCTTTCAGGAGT 59.957 41.667 14.20 0.00 35.94 3.85
453 454 3.137176 CAGAGGATGAAAGGATTAGGGCA 59.863 47.826 0.00 0.00 0.00 5.36
498 499 4.505808 CATGGCTCATTTATGGTGCAAAA 58.494 39.130 0.00 0.00 32.36 2.44
510 511 1.602920 GGTGCAAAAACTAGCAGGTGC 60.603 52.381 0.00 0.00 42.14 5.01
523 524 0.397941 CAGGTGCTCCAGGTTTCAGA 59.602 55.000 7.70 0.00 35.89 3.27
526 527 1.003580 GGTGCTCCAGGTTTCAGATCA 59.996 52.381 0.00 0.00 0.00 2.92
528 529 3.350833 GTGCTCCAGGTTTCAGATCATT 58.649 45.455 0.00 0.00 0.00 2.57
537 538 8.663167 TCCAGGTTTCAGATCATTACATATGAT 58.337 33.333 10.38 0.13 41.08 2.45
540 541 9.722184 AGGTTTCAGATCATTACATATGATGAG 57.278 33.333 10.38 0.00 38.73 2.90
541 542 9.716531 GGTTTCAGATCATTACATATGATGAGA 57.283 33.333 10.38 2.61 38.73 3.27
576 577 2.714250 ACCAAACAGGGACAATCACCTA 59.286 45.455 0.00 0.00 43.89 3.08
591 592 7.221450 ACAATCACCTAGTAACTGCAAAAGTA 58.779 34.615 0.00 0.00 38.56 2.24
612 613 4.708726 AATTGCAAGAAGGTATGAGCAC 57.291 40.909 4.94 0.00 0.00 4.40
615 616 4.486125 TGCAAGAAGGTATGAGCACATA 57.514 40.909 0.00 0.00 37.87 2.29
621 622 7.442364 GCAAGAAGGTATGAGCACATATTAAGA 59.558 37.037 7.13 0.00 40.45 2.10
633 634 3.222603 CATATTAAGAGCCAACCCCACC 58.777 50.000 0.00 0.00 0.00 4.61
657 658 6.547141 CCTGGAAGATTGATAACATTAAGGCA 59.453 38.462 0.00 0.00 34.07 4.75
725 726 5.291971 CAAGGCTGCAAAGAAAATAGTGTT 58.708 37.500 0.50 0.00 0.00 3.32
753 754 8.095452 AGAAGCTATTAGAAGGGATGAAAGAA 57.905 34.615 0.00 0.00 0.00 2.52
839 840 5.261216 ACTTATTGGTTTGGACCCTACATG 58.739 41.667 0.00 0.00 45.92 3.21
878 879 7.259290 TCTTTCAAAGGTTCTATGTGTGTTC 57.741 36.000 0.00 0.00 0.00 3.18
891 892 3.402110 TGTGTGTTCCAGTGCTATGAAG 58.598 45.455 0.00 0.00 0.00 3.02
993 994 4.951715 TGTGCAATTGGAAGAGATGCTAAT 59.048 37.500 7.72 0.00 37.86 1.73
1141 1142 9.177608 TCATTTCAGATCAACAAAAGGTATAGG 57.822 33.333 0.00 0.00 0.00 2.57
1172 1173 9.927668 CATGTTTTATTTGATAGGTTCCTTTGT 57.072 29.630 0.00 0.00 0.00 2.83
1175 1176 9.841880 GTTTTATTTGATAGGTTCCTTTGTCTC 57.158 33.333 0.00 0.00 0.00 3.36
1176 1177 7.843490 TTATTTGATAGGTTCCTTTGTCTCG 57.157 36.000 0.00 0.00 0.00 4.04
1177 1178 5.477607 TTTGATAGGTTCCTTTGTCTCGA 57.522 39.130 0.00 0.00 0.00 4.04
1178 1179 4.451629 TGATAGGTTCCTTTGTCTCGAC 57.548 45.455 0.00 0.00 0.00 4.20
1179 1180 3.119602 TGATAGGTTCCTTTGTCTCGACG 60.120 47.826 0.00 0.00 0.00 5.12
1180 1181 1.325355 AGGTTCCTTTGTCTCGACGA 58.675 50.000 0.00 0.00 0.00 4.20
1181 1182 1.893801 AGGTTCCTTTGTCTCGACGAT 59.106 47.619 0.00 0.00 0.00 3.73
1182 1183 1.993370 GGTTCCTTTGTCTCGACGATG 59.007 52.381 0.00 0.00 0.00 3.84
1183 1184 1.993370 GTTCCTTTGTCTCGACGATGG 59.007 52.381 0.00 11.24 39.90 3.51
1184 1185 1.541379 TCCTTTGTCTCGACGATGGA 58.459 50.000 14.63 14.63 43.06 3.41
1185 1186 2.100197 TCCTTTGTCTCGACGATGGAT 58.900 47.619 14.63 0.00 41.46 3.41
1186 1187 2.159240 TCCTTTGTCTCGACGATGGATG 60.159 50.000 14.63 0.00 41.46 3.51
1190 1191 1.953686 TGTCTCGACGATGGATGCATA 59.046 47.619 0.00 0.00 0.00 3.14
1191 1192 2.360801 TGTCTCGACGATGGATGCATAA 59.639 45.455 0.00 0.00 0.00 1.90
1192 1193 2.726760 GTCTCGACGATGGATGCATAAC 59.273 50.000 0.00 0.00 0.00 1.89
1194 1195 3.068165 TCTCGACGATGGATGCATAACTT 59.932 43.478 0.00 0.00 0.00 2.66
1196 1197 4.546570 TCGACGATGGATGCATAACTTAG 58.453 43.478 0.00 0.00 0.00 2.18
1198 1199 4.383052 CGACGATGGATGCATAACTTAGTC 59.617 45.833 0.00 9.10 0.00 2.59
1199 1200 5.276461 ACGATGGATGCATAACTTAGTCA 57.724 39.130 0.00 0.00 0.00 3.41
1201 1202 6.291377 ACGATGGATGCATAACTTAGTCATT 58.709 36.000 0.00 0.00 0.00 2.57
1202 1203 6.767902 ACGATGGATGCATAACTTAGTCATTT 59.232 34.615 0.00 0.00 0.00 2.32
1203 1204 7.931407 ACGATGGATGCATAACTTAGTCATTTA 59.069 33.333 0.00 0.00 0.00 1.40
1204 1205 8.223769 CGATGGATGCATAACTTAGTCATTTAC 58.776 37.037 0.00 0.00 0.00 2.01
1311 1318 2.257371 CACCACGACGACGGATGT 59.743 61.111 12.58 2.65 44.46 3.06
1332 1346 7.494952 GGATGTATGACCTTGTCCTTTAGTAAC 59.505 40.741 0.00 0.00 0.00 2.50
1367 1445 7.507616 TGTTTTATTATTTGACAGGGTCTGGTT 59.492 33.333 0.00 0.00 35.51 3.67
1377 1455 2.766263 CAGGGTCTGGTTAGTAGCATGA 59.234 50.000 0.00 0.00 0.00 3.07
1601 1680 0.969409 AGCATTGGGCCAGAGCTTTC 60.969 55.000 23.91 4.81 46.50 2.62
1621 1700 6.239148 GCTTTCTTTCCTGTTGGATCTCTTTT 60.239 38.462 0.00 0.00 42.81 2.27
1674 1753 5.407084 TCTTTTAACAACGCGATCATTGAGA 59.593 36.000 15.93 2.27 0.00 3.27
1734 1813 4.887071 TCAGGCACAAAGTTACACAAAGAT 59.113 37.500 0.00 0.00 0.00 2.40
1866 1945 6.739331 TTTGGAATGGAAAAGAAGGCTTTA 57.261 33.333 0.00 0.00 43.32 1.85
1916 1995 3.437049 GGAGCTACACTGTCAATTTGGAC 59.563 47.826 0.00 0.00 38.29 4.02
1974 2053 0.171903 GCTACCTTGTTGCCATGCTG 59.828 55.000 0.00 0.00 0.00 4.41
1976 2055 1.888512 CTACCTTGTTGCCATGCTGTT 59.111 47.619 0.00 0.00 0.00 3.16
2075 2154 3.123620 GAGCACTGCTTGGAGCCG 61.124 66.667 4.67 0.00 41.51 5.52
2078 2157 3.052082 CACTGCTTGGAGCCGGTG 61.052 66.667 1.90 8.09 41.51 4.94
2086 2165 4.452733 GGAGCCGGTGGAAGGTCG 62.453 72.222 1.90 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.416516 TCTCTGAATCTACAAGTCCACCA 58.583 43.478 0.00 0.00 0.00 4.17
1 2 4.464597 ACTCTCTGAATCTACAAGTCCACC 59.535 45.833 0.00 0.00 0.00 4.61
3 4 4.081972 GCACTCTCTGAATCTACAAGTCCA 60.082 45.833 0.00 0.00 0.00 4.02
4 5 4.159506 AGCACTCTCTGAATCTACAAGTCC 59.840 45.833 0.00 0.00 0.00 3.85
5 6 5.323371 AGCACTCTCTGAATCTACAAGTC 57.677 43.478 0.00 0.00 0.00 3.01
6 7 5.736951 AAGCACTCTCTGAATCTACAAGT 57.263 39.130 0.00 0.00 0.00 3.16
7 8 5.741510 CGTAAGCACTCTCTGAATCTACAAG 59.258 44.000 0.00 0.00 0.00 3.16
8 9 5.414765 TCGTAAGCACTCTCTGAATCTACAA 59.585 40.000 0.00 0.00 37.18 2.41
21 22 3.269486 TCGCTATCATCGTAAGCACTC 57.731 47.619 0.00 0.00 35.98 3.51
26 27 6.801862 TGTCACATAATCGCTATCATCGTAAG 59.198 38.462 0.00 0.00 0.00 2.34
28 29 6.249035 TGTCACATAATCGCTATCATCGTA 57.751 37.500 0.00 0.00 0.00 3.43
30 31 4.560427 CCTGTCACATAATCGCTATCATCG 59.440 45.833 0.00 0.00 0.00 3.84
49 50 4.646945 CAGTCCACTATCATCACTACCTGT 59.353 45.833 0.00 0.00 0.00 4.00
63 64 7.125659 TCAACATATTCTTCATCCAGTCCACTA 59.874 37.037 0.00 0.00 0.00 2.74
219 220 8.853077 AGTAATGTTCATCATCTGAGTCAAAA 57.147 30.769 0.00 0.00 35.48 2.44
282 283 4.328118 AATGAATTGGCTCTTCCTCCTT 57.672 40.909 0.00 0.00 35.26 3.36
337 338 4.043435 ACTCCTGAAAGCCATTCCTAAACT 59.957 41.667 0.00 0.00 37.22 2.66
350 351 6.042638 TCATCTGGTTCTTACTCCTGAAAG 57.957 41.667 0.00 0.00 35.83 2.62
417 418 8.469309 TTTCATCCTCTGACTTCAAGAAATTT 57.531 30.769 0.00 0.00 32.17 1.82
419 420 6.658391 CCTTTCATCCTCTGACTTCAAGAAAT 59.342 38.462 0.00 0.00 32.17 2.17
424 425 5.768980 ATCCTTTCATCCTCTGACTTCAA 57.231 39.130 0.00 0.00 32.17 2.69
453 454 0.706433 ATCCTGGCCATCCACACTTT 59.294 50.000 5.51 0.00 37.47 2.66
510 511 8.152898 TCATATGTAATGATCTGAAACCTGGAG 58.847 37.037 0.00 0.00 0.00 3.86
528 529 8.943002 GCACATTCATGATTCTCATCATATGTA 58.057 33.333 10.95 0.00 46.79 2.29
537 538 3.688235 TGGTGCACATTCATGATTCTCA 58.312 40.909 20.43 0.00 0.00 3.27
540 541 4.558178 TGTTTGGTGCACATTCATGATTC 58.442 39.130 20.43 0.00 0.00 2.52
541 542 4.561938 CCTGTTTGGTGCACATTCATGATT 60.562 41.667 20.43 0.00 0.00 2.57
543 544 2.296752 CCTGTTTGGTGCACATTCATGA 59.703 45.455 20.43 0.00 0.00 3.07
547 548 1.000274 GTCCCTGTTTGGTGCACATTC 60.000 52.381 20.43 1.36 0.00 2.67
548 549 1.039856 GTCCCTGTTTGGTGCACATT 58.960 50.000 20.43 0.00 0.00 2.71
549 550 0.106268 TGTCCCTGTTTGGTGCACAT 60.106 50.000 20.43 0.00 0.00 3.21
555 556 1.499007 AGGTGATTGTCCCTGTTTGGT 59.501 47.619 0.00 0.00 0.00 3.67
591 592 4.081406 TGTGCTCATACCTTCTTGCAATT 58.919 39.130 0.00 0.00 32.10 2.32
612 613 3.117512 AGGTGGGGTTGGCTCTTAATATG 60.118 47.826 0.00 0.00 0.00 1.78
615 616 1.005924 CAGGTGGGGTTGGCTCTTAAT 59.994 52.381 0.00 0.00 0.00 1.40
621 622 2.780924 TTCCAGGTGGGGTTGGCT 60.781 61.111 0.00 0.00 37.22 4.75
633 634 7.572523 TGCCTTAATGTTATCAATCTTCCAG 57.427 36.000 0.00 0.00 0.00 3.86
657 658 5.595952 AGCAAAGAAATCCTTCAGAACAGTT 59.404 36.000 0.00 0.00 33.02 3.16
725 726 8.783660 TTTCATCCCTTCTAATAGCTTCTCTA 57.216 34.615 0.00 0.00 0.00 2.43
753 754 5.568620 AGTCAAAGACCTTGGTGTATTCT 57.431 39.130 0.00 0.00 35.56 2.40
839 840 6.868339 CCTTTGAAAGATGTTTTGGTCCATAC 59.132 38.462 6.49 0.00 0.00 2.39
878 879 5.712152 AAAACCTTTCTTCATAGCACTGG 57.288 39.130 0.00 0.00 0.00 4.00
891 892 7.090808 CCCTTCTACATGCTTTAAAACCTTTC 58.909 38.462 0.00 0.00 0.00 2.62
993 994 6.767524 CAAGCTATTGGGTACATTTGGTTA 57.232 37.500 0.00 0.00 32.43 2.85
1148 1149 9.362151 AGACAAAGGAACCTATCAAATAAAACA 57.638 29.630 0.00 0.00 0.00 2.83
1154 1155 5.875359 GTCGAGACAAAGGAACCTATCAAAT 59.125 40.000 0.00 0.00 0.00 2.32
1159 1160 3.087031 TCGTCGAGACAAAGGAACCTAT 58.913 45.455 4.02 0.00 0.00 2.57
1163 1164 1.993370 CCATCGTCGAGACAAAGGAAC 59.007 52.381 0.00 0.00 0.00 3.62
1164 1165 1.890489 TCCATCGTCGAGACAAAGGAA 59.110 47.619 0.00 0.00 0.00 3.36
1167 1168 1.590238 GCATCCATCGTCGAGACAAAG 59.410 52.381 0.00 0.00 0.00 2.77
1169 1170 0.530288 TGCATCCATCGTCGAGACAA 59.470 50.000 0.00 0.00 0.00 3.18
1170 1171 0.746659 ATGCATCCATCGTCGAGACA 59.253 50.000 0.00 0.00 0.00 3.41
1172 1173 2.623416 AGTTATGCATCCATCGTCGAGA 59.377 45.455 0.19 0.00 32.85 4.04
1173 1174 3.018598 AGTTATGCATCCATCGTCGAG 57.981 47.619 0.19 0.00 32.85 4.04
1175 1176 4.299155 ACTAAGTTATGCATCCATCGTCG 58.701 43.478 0.19 0.00 32.85 5.12
1176 1177 5.289595 TGACTAAGTTATGCATCCATCGTC 58.710 41.667 0.19 5.30 32.85 4.20
1177 1178 5.276461 TGACTAAGTTATGCATCCATCGT 57.724 39.130 0.19 0.00 32.85 3.73
1178 1179 6.791887 AATGACTAAGTTATGCATCCATCG 57.208 37.500 0.19 0.00 32.85 3.84
1179 1180 9.277783 AGTAAATGACTAAGTTATGCATCCATC 57.722 33.333 0.19 0.00 36.27 3.51
1243 1245 2.180946 AGGACTAGGTCATGCATCCA 57.819 50.000 7.15 0.00 33.68 3.41
1311 1318 6.839124 TCGTTACTAAAGGACAAGGTCATA 57.161 37.500 0.00 0.00 33.68 2.15
1367 1445 8.762481 TTGGTAGATAGTCTTTCATGCTACTA 57.238 34.615 0.00 0.00 0.00 1.82
1377 1455 5.499004 TGTGCCTTTGGTAGATAGTCTTT 57.501 39.130 0.00 0.00 0.00 2.52
1424 1502 9.383519 CTGTACTTCTTTCTCCAATTAGCATAA 57.616 33.333 0.00 0.00 0.00 1.90
1463 1541 4.083855 GCAATAGCCCAAAACTTCTTTTGC 60.084 41.667 1.15 0.00 43.44 3.68
1601 1680 6.264067 AGTCAAAAAGAGATCCAACAGGAAAG 59.736 38.462 0.00 0.00 34.49 2.62
1621 1700 7.438160 CACATAAGTTGTTGTCTACTGAGTCAA 59.562 37.037 0.00 0.00 36.00 3.18
1674 1753 5.714863 AGAGATGACAGGATAGAATCTGGT 58.285 41.667 0.00 0.00 35.47 4.00
1734 1813 7.835822 TCAGATTTTGTCCTGTTTTCTTGAAA 58.164 30.769 0.00 0.00 0.00 2.69
1866 1945 6.182507 TCTACCACTGACATGTTTTACCTT 57.817 37.500 0.00 0.00 0.00 3.50
2075 2154 1.002502 CCTTTCCCGACCTTCCACC 60.003 63.158 0.00 0.00 0.00 4.61
2078 2157 1.002502 CCACCTTTCCCGACCTTCC 60.003 63.158 0.00 0.00 0.00 3.46
2086 2165 2.025321 TCAGAAATAGGCCACCTTTCCC 60.025 50.000 5.01 0.00 34.61 3.97


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.