Multiple sequence alignment - TraesCS2B01G026100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G026100 chr2B 100.000 3197 0 0 1 3197 12028001 12024805 0.000000e+00 5904.0
1 TraesCS2B01G026100 chr2B 82.825 1770 185 58 919 2616 11984478 11986200 0.000000e+00 1474.0
2 TraesCS2B01G026100 chr2B 80.336 1490 192 52 850 2286 12077813 12076372 0.000000e+00 1035.0
3 TraesCS2B01G026100 chr2B 86.282 503 47 12 2371 2862 12076250 12075759 7.860000e-146 527.0
4 TraesCS2B01G026100 chr2B 84.492 374 42 8 2836 3197 12075756 12075387 3.920000e-94 355.0
5 TraesCS2B01G026100 chr2B 77.143 525 59 29 2269 2756 70880555 70880055 6.850000e-62 248.0
6 TraesCS2B01G026100 chr2B 82.439 205 28 4 263 463 179049415 179049615 4.240000e-39 172.0
7 TraesCS2B01G026100 chr2B 85.906 149 19 2 320 466 626089457 626089605 1.190000e-34 158.0
8 TraesCS2B01G026100 chr2B 84.043 94 12 2 493 583 732888340 732888433 1.580000e-13 87.9
9 TraesCS2B01G026100 chr2B 100.000 41 0 0 852 892 70882796 70882756 3.420000e-10 76.8
10 TraesCS2B01G026100 chr2B 80.808 99 8 10 550 645 313760076 313760166 2.060000e-07 67.6
11 TraesCS2B01G026100 chr2A 94.163 2313 77 20 919 3197 8371044 8368756 0.000000e+00 3470.0
12 TraesCS2B01G026100 chr2A 74.707 1961 303 88 754 2609 7806553 7808425 0.000000e+00 695.0
13 TraesCS2B01G026100 chr2A 78.311 1042 125 55 1666 2649 8045934 8046932 2.140000e-161 579.0
14 TraesCS2B01G026100 chr2A 74.384 1421 264 56 986 2343 8314958 8313575 1.700000e-142 516.0
15 TraesCS2B01G026100 chr2A 82.213 506 67 16 2371 2862 7921049 7921545 6.380000e-112 414.0
16 TraesCS2B01G026100 chr2A 76.337 879 119 54 852 1687 8182748 8181916 3.870000e-104 388.0
17 TraesCS2B01G026100 chr2A 79.964 559 78 16 1928 2465 8181678 8181133 6.470000e-102 381.0
18 TraesCS2B01G026100 chr2A 77.886 615 95 26 1865 2459 7920177 7920770 8.490000e-91 344.0
19 TraesCS2B01G026100 chr2A 90.574 244 23 0 1076 1319 8045376 8045619 1.110000e-84 324.0
20 TraesCS2B01G026100 chr2A 83.792 327 25 13 1340 1638 8045610 8045936 5.220000e-73 285.0
21 TraesCS2B01G026100 chr2A 77.287 317 37 21 732 1038 7919044 7919335 1.540000e-33 154.0
22 TraesCS2B01G026100 chr2A 89.231 65 6 1 913 976 8045286 8045350 2.640000e-11 80.5
23 TraesCS2B01G026100 chr2D 97.339 1503 29 4 1695 3197 8716881 8718372 0.000000e+00 2543.0
24 TraesCS2B01G026100 chr2D 84.114 1366 146 38 928 2258 8983202 8981873 0.000000e+00 1254.0
25 TraesCS2B01G026100 chr2D 90.959 918 66 7 850 1767 8715996 8716896 0.000000e+00 1219.0
26 TraesCS2B01G026100 chr2D 76.198 2025 334 73 844 2781 8888801 8890764 0.000000e+00 933.0
27 TraesCS2B01G026100 chr2D 76.130 863 125 45 852 1687 8920105 8920913 8.370000e-101 377.0
28 TraesCS2B01G026100 chr2D 78.010 623 101 18 1865 2465 8928548 8929156 3.030000e-95 359.0
29 TraesCS2B01G026100 chr2D 93.617 94 5 1 1 93 8715785 8715878 4.300000e-29 139.0
30 TraesCS2B01G026100 chr2D 93.443 61 1 2 685 745 8715878 8715935 1.580000e-13 87.9
31 TraesCS2B01G026100 chr3D 87.315 1214 114 20 988 2181 564006027 564004834 0.000000e+00 1352.0
32 TraesCS2B01G026100 chr3D 82.353 510 62 18 2371 2862 563861320 563861819 4.930000e-113 418.0
33 TraesCS2B01G026100 chr3D 77.844 668 97 33 852 1486 563859411 563860060 1.810000e-97 366.0
34 TraesCS2B01G026100 chr3D 78.431 612 97 20 1865 2459 563860448 563861041 1.810000e-97 366.0
35 TraesCS2B01G026100 chr7A 77.528 623 104 20 1865 2465 466508770 466509378 3.050000e-90 342.0
36 TraesCS2B01G026100 chr7A 78.618 463 77 16 2633 3091 466509838 466510282 1.450000e-73 287.0
37 TraesCS2B01G026100 chr7A 79.893 373 69 6 1975 2343 466492030 466492400 5.260000e-68 268.0
38 TraesCS2B01G026100 chr7A 77.207 487 63 25 852 1324 466507641 466508093 1.150000e-59 241.0
39 TraesCS2B01G026100 chr7A 85.000 220 33 0 1962 2181 466703178 466702959 1.150000e-54 224.0
40 TraesCS2B01G026100 chr7B 84.211 285 31 6 193 465 364630907 364630625 6.800000e-67 265.0
41 TraesCS2B01G026100 chr7B 83.849 291 33 6 188 466 640478837 640478549 6.800000e-67 265.0
42 TraesCS2B01G026100 chr7B 81.443 97 14 1 492 584 710025932 710025836 3.420000e-10 76.8
43 TraesCS2B01G026100 chr6B 82.736 307 40 6 172 466 507667747 507668052 8.800000e-66 261.0
44 TraesCS2B01G026100 chr6B 87.952 166 17 2 303 466 507668076 507668240 3.250000e-45 193.0
45 TraesCS2B01G026100 chr6B 83.750 160 23 3 309 466 603840126 603839968 7.150000e-32 148.0
46 TraesCS2B01G026100 chr6D 81.515 330 37 11 149 466 462395331 462395648 1.900000e-62 250.0
47 TraesCS2B01G026100 chr5B 85.906 149 19 1 320 466 384511253 384511401 1.190000e-34 158.0
48 TraesCS2B01G026100 chr1D 86.207 87 9 3 511 596 408767656 408767572 1.220000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G026100 chr2B 12024805 12028001 3196 True 5904.000000 5904 100.000000 1 3197 1 chr2B.!!$R1 3196
1 TraesCS2B01G026100 chr2B 11984478 11986200 1722 False 1474.000000 1474 82.825000 919 2616 1 chr2B.!!$F1 1697
2 TraesCS2B01G026100 chr2B 12075387 12077813 2426 True 639.000000 1035 83.703333 850 3197 3 chr2B.!!$R2 2347
3 TraesCS2B01G026100 chr2A 8368756 8371044 2288 True 3470.000000 3470 94.163000 919 3197 1 chr2A.!!$R2 2278
4 TraesCS2B01G026100 chr2A 7806553 7808425 1872 False 695.000000 695 74.707000 754 2609 1 chr2A.!!$F1 1855
5 TraesCS2B01G026100 chr2A 8313575 8314958 1383 True 516.000000 516 74.384000 986 2343 1 chr2A.!!$R1 1357
6 TraesCS2B01G026100 chr2A 8181133 8182748 1615 True 384.500000 388 78.150500 852 2465 2 chr2A.!!$R3 1613
7 TraesCS2B01G026100 chr2A 8045286 8046932 1646 False 317.125000 579 85.477000 913 2649 4 chr2A.!!$F3 1736
8 TraesCS2B01G026100 chr2A 7919044 7921545 2501 False 304.000000 414 79.128667 732 2862 3 chr2A.!!$F2 2130
9 TraesCS2B01G026100 chr2D 8981873 8983202 1329 True 1254.000000 1254 84.114000 928 2258 1 chr2D.!!$R1 1330
10 TraesCS2B01G026100 chr2D 8715785 8718372 2587 False 997.225000 2543 93.839500 1 3197 4 chr2D.!!$F4 3196
11 TraesCS2B01G026100 chr2D 8888801 8890764 1963 False 933.000000 933 76.198000 844 2781 1 chr2D.!!$F1 1937
12 TraesCS2B01G026100 chr2D 8920105 8920913 808 False 377.000000 377 76.130000 852 1687 1 chr2D.!!$F2 835
13 TraesCS2B01G026100 chr2D 8928548 8929156 608 False 359.000000 359 78.010000 1865 2465 1 chr2D.!!$F3 600
14 TraesCS2B01G026100 chr3D 564004834 564006027 1193 True 1352.000000 1352 87.315000 988 2181 1 chr3D.!!$R1 1193
15 TraesCS2B01G026100 chr3D 563859411 563861819 2408 False 383.333333 418 79.542667 852 2862 3 chr3D.!!$F1 2010
16 TraesCS2B01G026100 chr7A 466507641 466510282 2641 False 290.000000 342 77.784333 852 3091 3 chr7A.!!$F2 2239

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
554 555 0.096976 CGCCGATGTGGTTTTGCTAG 59.903 55.0 0.0 0.0 41.21 3.42 F
775 776 0.597637 CATATCCACCGTCCGCTGAC 60.598 60.0 0.0 0.0 38.18 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2194 2707 0.899717 GGTGGTGGTAGTACCGGTCA 60.900 60.0 12.40 0.00 42.58 4.02 R
2390 3315 0.967380 CCTGGTGAGGTGGCCAAATC 60.967 60.0 7.24 9.56 34.16 2.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
99 100 3.222287 AAAAACAAGGCTGGCTGGA 57.778 47.368 13.20 0.00 0.00 3.86
100 101 0.752658 AAAAACAAGGCTGGCTGGAC 59.247 50.000 13.20 0.00 0.00 4.02
101 102 0.106015 AAAACAAGGCTGGCTGGACT 60.106 50.000 13.20 0.00 0.00 3.85
102 103 0.771127 AAACAAGGCTGGCTGGACTA 59.229 50.000 13.20 0.00 0.00 2.59
103 104 0.995024 AACAAGGCTGGCTGGACTAT 59.005 50.000 13.20 0.00 0.00 2.12
104 105 1.879575 ACAAGGCTGGCTGGACTATA 58.120 50.000 13.20 0.00 0.00 1.31
105 106 2.196595 ACAAGGCTGGCTGGACTATAA 58.803 47.619 13.20 0.00 0.00 0.98
106 107 2.576191 ACAAGGCTGGCTGGACTATAAA 59.424 45.455 13.20 0.00 0.00 1.40
107 108 3.010138 ACAAGGCTGGCTGGACTATAAAA 59.990 43.478 13.20 0.00 0.00 1.52
108 109 4.016444 CAAGGCTGGCTGGACTATAAAAA 58.984 43.478 3.84 0.00 0.00 1.94
158 159 9.804977 ATATTTAGCTCTGATCTTTTGGCTAAT 57.195 29.630 14.55 10.17 40.39 1.73
160 161 9.804977 ATTTAGCTCTGATCTTTTGGCTAATAT 57.195 29.630 14.55 10.59 40.39 1.28
161 162 9.632638 TTTAGCTCTGATCTTTTGGCTAATATT 57.367 29.630 14.55 0.00 40.39 1.28
162 163 9.632638 TTAGCTCTGATCTTTTGGCTAATATTT 57.367 29.630 0.00 0.00 37.36 1.40
163 164 8.530804 AGCTCTGATCTTTTGGCTAATATTTT 57.469 30.769 0.00 0.00 0.00 1.82
164 165 9.632638 AGCTCTGATCTTTTGGCTAATATTTTA 57.367 29.630 0.00 0.00 0.00 1.52
188 189 9.707957 TTATTTTCCAATTACAGGATATGTGGT 57.292 29.630 0.00 0.00 43.80 4.16
189 190 7.403312 TTTTCCAATTACAGGATATGTGGTG 57.597 36.000 0.00 0.00 43.80 4.17
190 191 5.708736 TCCAATTACAGGATATGTGGTGT 57.291 39.130 0.00 0.00 43.80 4.16
191 192 5.680619 TCCAATTACAGGATATGTGGTGTC 58.319 41.667 0.00 0.00 43.80 3.67
192 193 5.190726 TCCAATTACAGGATATGTGGTGTCA 59.809 40.000 0.00 0.00 43.80 3.58
193 194 5.296780 CCAATTACAGGATATGTGGTGTCAC 59.703 44.000 0.00 0.00 43.80 3.67
194 195 2.672961 ACAGGATATGTGGTGTCACG 57.327 50.000 0.00 0.00 46.42 4.35
195 196 2.176045 ACAGGATATGTGGTGTCACGA 58.824 47.619 0.00 0.00 46.42 4.35
196 197 2.766263 ACAGGATATGTGGTGTCACGAT 59.234 45.455 0.00 0.00 46.42 3.73
197 198 3.197766 ACAGGATATGTGGTGTCACGATT 59.802 43.478 0.00 0.00 46.42 3.34
198 199 4.191544 CAGGATATGTGGTGTCACGATTT 58.808 43.478 0.00 0.00 46.42 2.17
199 200 5.105106 ACAGGATATGTGGTGTCACGATTTA 60.105 40.000 0.00 0.00 46.42 1.40
200 201 5.991606 CAGGATATGTGGTGTCACGATTTAT 59.008 40.000 0.00 0.00 46.42 1.40
201 202 6.483307 CAGGATATGTGGTGTCACGATTTATT 59.517 38.462 0.00 0.00 46.42 1.40
202 203 7.012327 CAGGATATGTGGTGTCACGATTTATTT 59.988 37.037 0.00 0.00 46.42 1.40
203 204 7.226720 AGGATATGTGGTGTCACGATTTATTTC 59.773 37.037 0.00 0.00 46.42 2.17
204 205 5.560966 ATGTGGTGTCACGATTTATTTCC 57.439 39.130 0.00 0.00 46.42 3.13
205 206 4.647611 TGTGGTGTCACGATTTATTTCCT 58.352 39.130 0.00 0.00 46.42 3.36
206 207 5.795972 TGTGGTGTCACGATTTATTTCCTA 58.204 37.500 0.00 0.00 46.42 2.94
207 208 6.231951 TGTGGTGTCACGATTTATTTCCTAA 58.768 36.000 0.00 0.00 46.42 2.69
208 209 6.882140 TGTGGTGTCACGATTTATTTCCTAAT 59.118 34.615 0.00 0.00 46.42 1.73
209 210 7.148323 TGTGGTGTCACGATTTATTTCCTAATG 60.148 37.037 0.00 0.00 46.42 1.90
210 211 7.065324 GTGGTGTCACGATTTATTTCCTAATGA 59.935 37.037 0.00 0.00 33.87 2.57
211 212 7.608376 TGGTGTCACGATTTATTTCCTAATGAA 59.392 33.333 0.00 0.00 0.00 2.57
212 213 7.908601 GGTGTCACGATTTATTTCCTAATGAAC 59.091 37.037 0.00 0.00 31.05 3.18
213 214 7.634817 GTGTCACGATTTATTTCCTAATGAACG 59.365 37.037 0.00 0.00 31.05 3.95
214 215 7.332430 TGTCACGATTTATTTCCTAATGAACGT 59.668 33.333 0.00 0.00 32.71 3.99
215 216 7.634817 GTCACGATTTATTTCCTAATGAACGTG 59.365 37.037 0.00 0.00 40.61 4.49
216 217 7.332430 TCACGATTTATTTCCTAATGAACGTGT 59.668 33.333 0.49 0.00 40.43 4.49
217 218 8.597227 CACGATTTATTTCCTAATGAACGTGTA 58.403 33.333 0.00 0.00 38.32 2.90
218 219 9.153721 ACGATTTATTTCCTAATGAACGTGTAA 57.846 29.630 0.00 0.00 32.07 2.41
225 226 8.851541 TTTCCTAATGAACGTGTAATTAAGGT 57.148 30.769 0.00 0.00 31.05 3.50
226 227 9.941325 TTTCCTAATGAACGTGTAATTAAGGTA 57.059 29.630 0.00 0.00 31.05 3.08
227 228 8.931385 TCCTAATGAACGTGTAATTAAGGTAC 57.069 34.615 0.00 0.00 0.00 3.34
228 229 8.530311 TCCTAATGAACGTGTAATTAAGGTACA 58.470 33.333 0.00 0.00 0.00 2.90
229 230 9.321562 CCTAATGAACGTGTAATTAAGGTACAT 57.678 33.333 0.00 0.00 34.15 2.29
232 233 8.780846 ATGAACGTGTAATTAAGGTACATTGA 57.219 30.769 2.37 0.00 34.15 2.57
233 234 8.780846 TGAACGTGTAATTAAGGTACATTGAT 57.219 30.769 2.37 0.00 34.15 2.57
234 235 9.221933 TGAACGTGTAATTAAGGTACATTGATT 57.778 29.630 13.71 13.71 34.15 2.57
235 236 9.698617 GAACGTGTAATTAAGGTACATTGATTC 57.301 33.333 12.76 6.82 34.15 2.52
236 237 8.205131 ACGTGTAATTAAGGTACATTGATTCC 57.795 34.615 12.76 3.84 34.15 3.01
237 238 8.044908 ACGTGTAATTAAGGTACATTGATTCCT 58.955 33.333 12.76 0.00 34.15 3.36
238 239 9.537192 CGTGTAATTAAGGTACATTGATTCCTA 57.463 33.333 12.76 0.44 34.15 2.94
247 248 8.980481 AGGTACATTGATTCCTAATTTAGGTG 57.020 34.615 19.60 12.78 46.32 4.00
248 249 8.557450 AGGTACATTGATTCCTAATTTAGGTGT 58.443 33.333 19.60 16.91 46.32 4.16
249 250 9.185680 GGTACATTGATTCCTAATTTAGGTGTT 57.814 33.333 19.60 7.96 46.32 3.32
288 289 9.662947 TGATATATGATGTGATGATTTGTCTCC 57.337 33.333 0.00 0.00 0.00 3.71
289 290 9.887629 GATATATGATGTGATGATTTGTCTCCT 57.112 33.333 0.00 0.00 0.00 3.69
293 294 7.797038 TGATGTGATGATTTGTCTCCTAATG 57.203 36.000 0.00 0.00 0.00 1.90
294 295 7.567458 TGATGTGATGATTTGTCTCCTAATGA 58.433 34.615 0.00 0.00 0.00 2.57
295 296 8.048514 TGATGTGATGATTTGTCTCCTAATGAA 58.951 33.333 0.00 0.00 0.00 2.57
296 297 7.854557 TGTGATGATTTGTCTCCTAATGAAG 57.145 36.000 0.00 0.00 0.00 3.02
298 299 6.825721 GTGATGATTTGTCTCCTAATGAAGGT 59.174 38.462 0.00 0.00 46.62 3.50
299 300 7.987458 GTGATGATTTGTCTCCTAATGAAGGTA 59.013 37.037 0.00 0.00 46.62 3.08
300 301 8.206867 TGATGATTTGTCTCCTAATGAAGGTAG 58.793 37.037 0.00 0.00 46.62 3.18
301 302 6.349300 TGATTTGTCTCCTAATGAAGGTAGC 58.651 40.000 0.00 0.00 46.62 3.58
302 303 4.386867 TTGTCTCCTAATGAAGGTAGCG 57.613 45.455 0.00 0.00 46.62 4.26
303 304 2.100916 TGTCTCCTAATGAAGGTAGCGC 59.899 50.000 0.00 0.00 46.62 5.92
304 305 2.100916 GTCTCCTAATGAAGGTAGCGCA 59.899 50.000 11.47 0.00 46.62 6.09
305 306 2.764010 TCTCCTAATGAAGGTAGCGCAA 59.236 45.455 11.47 0.00 46.62 4.85
306 307 3.388024 TCTCCTAATGAAGGTAGCGCAAT 59.612 43.478 11.47 0.00 46.62 3.56
307 308 3.466836 TCCTAATGAAGGTAGCGCAATG 58.533 45.455 11.47 0.00 46.62 2.82
308 309 3.133901 TCCTAATGAAGGTAGCGCAATGA 59.866 43.478 11.47 0.00 46.62 2.57
309 310 4.067896 CCTAATGAAGGTAGCGCAATGAT 58.932 43.478 11.47 0.00 40.94 2.45
310 311 4.516698 CCTAATGAAGGTAGCGCAATGATT 59.483 41.667 11.47 0.00 40.94 2.57
311 312 4.558538 AATGAAGGTAGCGCAATGATTC 57.441 40.909 11.47 7.78 0.00 2.52
312 313 1.933181 TGAAGGTAGCGCAATGATTCG 59.067 47.619 11.47 0.00 0.00 3.34
313 314 1.933853 GAAGGTAGCGCAATGATTCGT 59.066 47.619 11.47 0.00 0.00 3.85
314 315 2.882927 AGGTAGCGCAATGATTCGTA 57.117 45.000 11.47 0.00 0.00 3.43
315 316 2.743938 AGGTAGCGCAATGATTCGTAG 58.256 47.619 11.47 0.00 0.00 3.51
316 317 2.100916 AGGTAGCGCAATGATTCGTAGT 59.899 45.455 11.47 0.00 0.00 2.73
317 318 2.864343 GGTAGCGCAATGATTCGTAGTT 59.136 45.455 11.47 0.00 0.00 2.24
318 319 4.046462 GGTAGCGCAATGATTCGTAGTTA 58.954 43.478 11.47 0.00 0.00 2.24
319 320 4.505191 GGTAGCGCAATGATTCGTAGTTAA 59.495 41.667 11.47 0.00 0.00 2.01
320 321 5.005971 GGTAGCGCAATGATTCGTAGTTAAA 59.994 40.000 11.47 0.00 0.00 1.52
321 322 4.893795 AGCGCAATGATTCGTAGTTAAAC 58.106 39.130 11.47 0.00 0.00 2.01
322 323 3.712572 GCGCAATGATTCGTAGTTAAACG 59.287 43.478 0.30 0.00 44.19 3.60
323 324 4.722908 GCGCAATGATTCGTAGTTAAACGT 60.723 41.667 0.30 0.00 43.31 3.99
324 325 4.717299 CGCAATGATTCGTAGTTAAACGTG 59.283 41.667 0.00 0.00 43.31 4.49
325 326 5.614760 GCAATGATTCGTAGTTAAACGTGT 58.385 37.500 0.00 0.00 43.31 4.49
326 327 6.075280 GCAATGATTCGTAGTTAAACGTGTT 58.925 36.000 0.00 0.00 43.31 3.32
327 328 6.031003 GCAATGATTCGTAGTTAAACGTGTTG 59.969 38.462 0.00 2.15 43.31 3.33
328 329 6.774354 ATGATTCGTAGTTAAACGTGTTGT 57.226 33.333 0.00 0.00 43.31 3.32
329 330 5.965202 TGATTCGTAGTTAAACGTGTTGTG 58.035 37.500 0.00 0.00 43.31 3.33
330 331 4.775440 TTCGTAGTTAAACGTGTTGTGG 57.225 40.909 0.00 0.00 43.31 4.17
331 332 3.779759 TCGTAGTTAAACGTGTTGTGGT 58.220 40.909 0.00 0.00 43.31 4.16
332 333 3.551082 TCGTAGTTAAACGTGTTGTGGTG 59.449 43.478 0.00 0.00 43.31 4.17
333 334 3.551082 CGTAGTTAAACGTGTTGTGGTGA 59.449 43.478 0.00 0.00 38.07 4.02
334 335 4.209703 CGTAGTTAAACGTGTTGTGGTGAT 59.790 41.667 0.00 0.00 38.07 3.06
335 336 4.545823 AGTTAAACGTGTTGTGGTGATG 57.454 40.909 0.00 0.00 0.00 3.07
336 337 4.193090 AGTTAAACGTGTTGTGGTGATGA 58.807 39.130 0.00 0.00 0.00 2.92
337 338 4.034742 AGTTAAACGTGTTGTGGTGATGAC 59.965 41.667 0.00 0.00 0.00 3.06
338 339 2.325583 AACGTGTTGTGGTGATGACT 57.674 45.000 0.00 0.00 0.00 3.41
339 340 3.462483 AACGTGTTGTGGTGATGACTA 57.538 42.857 0.00 0.00 0.00 2.59
340 341 3.462483 ACGTGTTGTGGTGATGACTAA 57.538 42.857 0.00 0.00 0.00 2.24
341 342 3.799366 ACGTGTTGTGGTGATGACTAAA 58.201 40.909 0.00 0.00 0.00 1.85
342 343 4.193090 ACGTGTTGTGGTGATGACTAAAA 58.807 39.130 0.00 0.00 0.00 1.52
343 344 4.819630 ACGTGTTGTGGTGATGACTAAAAT 59.180 37.500 0.00 0.00 0.00 1.82
344 345 5.298276 ACGTGTTGTGGTGATGACTAAAATT 59.702 36.000 0.00 0.00 0.00 1.82
345 346 6.483974 ACGTGTTGTGGTGATGACTAAAATTA 59.516 34.615 0.00 0.00 0.00 1.40
346 347 7.012515 ACGTGTTGTGGTGATGACTAAAATTAA 59.987 33.333 0.00 0.00 0.00 1.40
347 348 8.020819 CGTGTTGTGGTGATGACTAAAATTAAT 58.979 33.333 0.00 0.00 0.00 1.40
348 349 9.691362 GTGTTGTGGTGATGACTAAAATTAATT 57.309 29.630 0.00 0.00 0.00 1.40
385 386 3.686916 TTGTGATACAACATCGGGACA 57.313 42.857 0.00 0.00 32.34 4.02
386 387 3.686916 TGTGATACAACATCGGGACAA 57.313 42.857 0.00 0.00 0.00 3.18
387 388 4.214986 TGTGATACAACATCGGGACAAT 57.785 40.909 0.00 0.00 0.00 2.71
388 389 4.188462 TGTGATACAACATCGGGACAATC 58.812 43.478 0.00 0.00 0.00 2.67
389 390 4.081142 TGTGATACAACATCGGGACAATCT 60.081 41.667 0.00 0.00 0.00 2.40
390 391 4.271049 GTGATACAACATCGGGACAATCTG 59.729 45.833 0.00 0.00 0.00 2.90
391 392 2.113860 ACAACATCGGGACAATCTGG 57.886 50.000 0.00 0.00 0.00 3.86
392 393 1.351017 ACAACATCGGGACAATCTGGT 59.649 47.619 0.00 0.00 0.00 4.00
393 394 2.009774 CAACATCGGGACAATCTGGTC 58.990 52.381 0.00 0.00 37.06 4.02
405 406 5.828747 GACAATCTGGTCCATTGATGAATG 58.171 41.667 11.43 0.00 39.04 2.67
417 418 6.020971 CATTGATGAATGGTGGATATGTGG 57.979 41.667 0.00 0.00 36.12 4.17
418 419 3.489355 TGATGAATGGTGGATATGTGGC 58.511 45.455 0.00 0.00 0.00 5.01
419 420 3.138839 TGATGAATGGTGGATATGTGGCT 59.861 43.478 0.00 0.00 0.00 4.75
420 421 2.934887 TGAATGGTGGATATGTGGCTG 58.065 47.619 0.00 0.00 0.00 4.85
421 422 2.509131 TGAATGGTGGATATGTGGCTGA 59.491 45.455 0.00 0.00 0.00 4.26
422 423 2.945080 ATGGTGGATATGTGGCTGAG 57.055 50.000 0.00 0.00 0.00 3.35
423 424 1.878211 TGGTGGATATGTGGCTGAGA 58.122 50.000 0.00 0.00 0.00 3.27
424 425 2.411583 TGGTGGATATGTGGCTGAGAT 58.588 47.619 0.00 0.00 0.00 2.75
425 426 2.369860 TGGTGGATATGTGGCTGAGATC 59.630 50.000 0.00 0.00 0.00 2.75
426 427 2.636893 GGTGGATATGTGGCTGAGATCT 59.363 50.000 0.00 0.00 0.00 2.75
427 428 3.834813 GGTGGATATGTGGCTGAGATCTA 59.165 47.826 0.00 0.00 0.00 1.98
428 429 4.284490 GGTGGATATGTGGCTGAGATCTAA 59.716 45.833 0.00 0.00 0.00 2.10
429 430 5.046014 GGTGGATATGTGGCTGAGATCTAAT 60.046 44.000 0.00 0.00 0.00 1.73
430 431 5.873712 GTGGATATGTGGCTGAGATCTAATG 59.126 44.000 0.00 0.00 0.00 1.90
431 432 5.545335 TGGATATGTGGCTGAGATCTAATGT 59.455 40.000 0.00 0.00 0.00 2.71
432 433 6.043590 TGGATATGTGGCTGAGATCTAATGTT 59.956 38.462 0.00 0.00 0.00 2.71
433 434 6.939163 GGATATGTGGCTGAGATCTAATGTTT 59.061 38.462 0.00 0.00 0.00 2.83
434 435 7.118971 GGATATGTGGCTGAGATCTAATGTTTC 59.881 40.741 0.00 0.00 0.00 2.78
435 436 5.426689 TGTGGCTGAGATCTAATGTTTCT 57.573 39.130 0.00 0.00 0.00 2.52
436 437 5.181009 TGTGGCTGAGATCTAATGTTTCTG 58.819 41.667 0.00 0.00 0.00 3.02
437 438 4.034975 GTGGCTGAGATCTAATGTTTCTGC 59.965 45.833 0.00 0.00 33.61 4.26
438 439 3.563390 GGCTGAGATCTAATGTTTCTGCC 59.437 47.826 9.85 9.85 42.76 4.85
439 440 4.450053 GCTGAGATCTAATGTTTCTGCCT 58.550 43.478 0.00 0.00 0.00 4.75
440 441 4.511082 GCTGAGATCTAATGTTTCTGCCTC 59.489 45.833 0.00 0.00 0.00 4.70
441 442 5.668471 CTGAGATCTAATGTTTCTGCCTCA 58.332 41.667 0.00 0.00 0.00 3.86
442 443 6.053632 TGAGATCTAATGTTTCTGCCTCAA 57.946 37.500 0.00 0.00 0.00 3.02
443 444 5.877012 TGAGATCTAATGTTTCTGCCTCAAC 59.123 40.000 0.00 0.00 0.00 3.18
444 445 6.059787 AGATCTAATGTTTCTGCCTCAACT 57.940 37.500 0.00 0.00 0.00 3.16
445 446 6.112058 AGATCTAATGTTTCTGCCTCAACTC 58.888 40.000 0.00 0.00 0.00 3.01
446 447 4.245660 TCTAATGTTTCTGCCTCAACTCG 58.754 43.478 0.00 0.00 0.00 4.18
447 448 1.160137 ATGTTTCTGCCTCAACTCGC 58.840 50.000 0.00 0.00 0.00 5.03
448 449 0.106708 TGTTTCTGCCTCAACTCGCT 59.893 50.000 0.00 0.00 0.00 4.93
449 450 1.230324 GTTTCTGCCTCAACTCGCTT 58.770 50.000 0.00 0.00 0.00 4.68
450 451 1.069636 GTTTCTGCCTCAACTCGCTTG 60.070 52.381 0.00 0.00 0.00 4.01
451 452 0.106708 TTCTGCCTCAACTCGCTTGT 59.893 50.000 0.00 0.00 0.00 3.16
452 453 0.106708 TCTGCCTCAACTCGCTTGTT 59.893 50.000 0.00 0.00 0.00 2.83
453 454 0.947244 CTGCCTCAACTCGCTTGTTT 59.053 50.000 0.00 0.00 0.00 2.83
454 455 2.143122 CTGCCTCAACTCGCTTGTTTA 58.857 47.619 0.00 0.00 0.00 2.01
455 456 2.548057 CTGCCTCAACTCGCTTGTTTAA 59.452 45.455 0.00 0.00 0.00 1.52
456 457 3.146066 TGCCTCAACTCGCTTGTTTAAT 58.854 40.909 0.00 0.00 0.00 1.40
457 458 4.320023 TGCCTCAACTCGCTTGTTTAATA 58.680 39.130 0.00 0.00 0.00 0.98
458 459 4.391830 TGCCTCAACTCGCTTGTTTAATAG 59.608 41.667 0.00 0.00 0.00 1.73
459 460 4.392138 GCCTCAACTCGCTTGTTTAATAGT 59.608 41.667 0.00 0.00 0.00 2.12
460 461 5.579511 GCCTCAACTCGCTTGTTTAATAGTA 59.420 40.000 0.00 0.00 0.00 1.82
461 462 6.237861 GCCTCAACTCGCTTGTTTAATAGTAG 60.238 42.308 0.00 0.00 0.00 2.57
462 463 6.812160 CCTCAACTCGCTTGTTTAATAGTAGT 59.188 38.462 0.00 0.00 0.00 2.73
463 464 7.201444 CCTCAACTCGCTTGTTTAATAGTAGTG 60.201 40.741 0.00 0.00 0.00 2.74
464 465 6.588756 TCAACTCGCTTGTTTAATAGTAGTGG 59.411 38.462 0.00 0.00 0.00 4.00
465 466 6.276832 ACTCGCTTGTTTAATAGTAGTGGA 57.723 37.500 0.00 0.00 0.00 4.02
466 467 6.875076 ACTCGCTTGTTTAATAGTAGTGGAT 58.125 36.000 0.00 0.00 0.00 3.41
467 468 6.757010 ACTCGCTTGTTTAATAGTAGTGGATG 59.243 38.462 0.00 0.00 0.00 3.51
468 469 6.046593 TCGCTTGTTTAATAGTAGTGGATGG 58.953 40.000 0.00 0.00 0.00 3.51
469 470 6.046593 CGCTTGTTTAATAGTAGTGGATGGA 58.953 40.000 0.00 0.00 0.00 3.41
470 471 6.706270 CGCTTGTTTAATAGTAGTGGATGGAT 59.294 38.462 0.00 0.00 0.00 3.41
471 472 7.307396 CGCTTGTTTAATAGTAGTGGATGGATG 60.307 40.741 0.00 0.00 0.00 3.51
472 473 7.041098 GCTTGTTTAATAGTAGTGGATGGATGG 60.041 40.741 0.00 0.00 0.00 3.51
473 474 7.684317 TGTTTAATAGTAGTGGATGGATGGA 57.316 36.000 0.00 0.00 0.00 3.41
474 475 8.275187 TGTTTAATAGTAGTGGATGGATGGAT 57.725 34.615 0.00 0.00 0.00 3.41
475 476 8.156820 TGTTTAATAGTAGTGGATGGATGGATG 58.843 37.037 0.00 0.00 0.00 3.51
476 477 5.768980 AATAGTAGTGGATGGATGGATGG 57.231 43.478 0.00 0.00 0.00 3.51
477 478 3.350992 AGTAGTGGATGGATGGATGGA 57.649 47.619 0.00 0.00 0.00 3.41
478 479 3.668821 AGTAGTGGATGGATGGATGGAA 58.331 45.455 0.00 0.00 0.00 3.53
479 480 4.047166 AGTAGTGGATGGATGGATGGAAA 58.953 43.478 0.00 0.00 0.00 3.13
480 481 4.666907 AGTAGTGGATGGATGGATGGAAAT 59.333 41.667 0.00 0.00 0.00 2.17
481 482 3.840991 AGTGGATGGATGGATGGAAATG 58.159 45.455 0.00 0.00 0.00 2.32
482 483 2.895404 GTGGATGGATGGATGGAAATGG 59.105 50.000 0.00 0.00 0.00 3.16
483 484 2.790585 TGGATGGATGGATGGAAATGGA 59.209 45.455 0.00 0.00 0.00 3.41
484 485 3.181426 TGGATGGATGGATGGAAATGGAG 60.181 47.826 0.00 0.00 0.00 3.86
485 486 3.074985 GGATGGATGGATGGAAATGGAGA 59.925 47.826 0.00 0.00 0.00 3.71
486 487 4.264262 GGATGGATGGATGGAAATGGAGAT 60.264 45.833 0.00 0.00 0.00 2.75
487 488 4.108501 TGGATGGATGGAAATGGAGATG 57.891 45.455 0.00 0.00 0.00 2.90
488 489 3.181426 TGGATGGATGGAAATGGAGATGG 60.181 47.826 0.00 0.00 0.00 3.51
489 490 3.074985 GGATGGATGGAAATGGAGATGGA 59.925 47.826 0.00 0.00 0.00 3.41
490 491 3.870538 TGGATGGAAATGGAGATGGAG 57.129 47.619 0.00 0.00 0.00 3.86
491 492 3.396565 TGGATGGAAATGGAGATGGAGA 58.603 45.455 0.00 0.00 0.00 3.71
492 493 3.985452 TGGATGGAAATGGAGATGGAGAT 59.015 43.478 0.00 0.00 0.00 2.75
493 494 4.417854 TGGATGGAAATGGAGATGGAGATT 59.582 41.667 0.00 0.00 0.00 2.40
494 495 5.103387 TGGATGGAAATGGAGATGGAGATTT 60.103 40.000 0.00 0.00 0.00 2.17
495 496 5.243283 GGATGGAAATGGAGATGGAGATTTG 59.757 44.000 0.00 0.00 0.00 2.32
496 497 3.956199 TGGAAATGGAGATGGAGATTTGC 59.044 43.478 0.00 0.00 0.00 3.68
497 498 4.213513 GGAAATGGAGATGGAGATTTGCT 58.786 43.478 0.00 0.00 0.00 3.91
498 499 4.648307 GGAAATGGAGATGGAGATTTGCTT 59.352 41.667 0.00 0.00 0.00 3.91
499 500 5.221204 GGAAATGGAGATGGAGATTTGCTTC 60.221 44.000 0.00 0.00 0.00 3.86
500 501 3.287867 TGGAGATGGAGATTTGCTTCC 57.712 47.619 0.00 0.00 0.00 3.46
501 502 2.848694 TGGAGATGGAGATTTGCTTCCT 59.151 45.455 0.00 0.00 0.00 3.36
502 503 3.212685 GGAGATGGAGATTTGCTTCCTG 58.787 50.000 0.00 0.00 0.00 3.86
503 504 3.371380 GGAGATGGAGATTTGCTTCCTGT 60.371 47.826 0.00 0.00 0.00 4.00
504 505 3.618351 AGATGGAGATTTGCTTCCTGTG 58.382 45.455 0.00 0.00 0.00 3.66
505 506 3.265221 AGATGGAGATTTGCTTCCTGTGA 59.735 43.478 0.00 0.00 0.00 3.58
506 507 3.726557 TGGAGATTTGCTTCCTGTGAT 57.273 42.857 0.00 0.00 0.00 3.06
507 508 4.038271 TGGAGATTTGCTTCCTGTGATT 57.962 40.909 0.00 0.00 0.00 2.57
508 509 4.410099 TGGAGATTTGCTTCCTGTGATTT 58.590 39.130 0.00 0.00 0.00 2.17
509 510 4.460382 TGGAGATTTGCTTCCTGTGATTTC 59.540 41.667 0.00 0.00 0.00 2.17
510 511 4.704057 GGAGATTTGCTTCCTGTGATTTCT 59.296 41.667 0.00 0.00 0.00 2.52
511 512 5.392811 GGAGATTTGCTTCCTGTGATTTCTG 60.393 44.000 0.00 0.00 0.00 3.02
512 513 3.648339 TTTGCTTCCTGTGATTTCTGC 57.352 42.857 0.00 0.00 0.00 4.26
513 514 2.574006 TGCTTCCTGTGATTTCTGCT 57.426 45.000 0.00 0.00 0.00 4.24
514 515 2.430465 TGCTTCCTGTGATTTCTGCTC 58.570 47.619 0.00 0.00 0.00 4.26
515 516 1.396301 GCTTCCTGTGATTTCTGCTCG 59.604 52.381 0.00 0.00 0.00 5.03
516 517 2.932622 GCTTCCTGTGATTTCTGCTCGA 60.933 50.000 0.00 0.00 0.00 4.04
517 518 3.329386 CTTCCTGTGATTTCTGCTCGAA 58.671 45.455 0.00 0.00 0.00 3.71
518 519 2.688507 TCCTGTGATTTCTGCTCGAAC 58.311 47.619 0.00 0.00 0.00 3.95
519 520 2.300152 TCCTGTGATTTCTGCTCGAACT 59.700 45.455 0.00 0.00 0.00 3.01
520 521 2.414481 CCTGTGATTTCTGCTCGAACTG 59.586 50.000 0.00 0.00 0.00 3.16
521 522 2.414481 CTGTGATTTCTGCTCGAACTGG 59.586 50.000 0.00 0.00 0.00 4.00
522 523 2.037121 TGTGATTTCTGCTCGAACTGGA 59.963 45.455 0.00 0.00 0.00 3.86
523 524 3.265791 GTGATTTCTGCTCGAACTGGAT 58.734 45.455 0.00 0.00 0.00 3.41
524 525 3.063180 GTGATTTCTGCTCGAACTGGATG 59.937 47.826 0.00 0.00 0.00 3.51
525 526 1.442769 TTTCTGCTCGAACTGGATGC 58.557 50.000 0.00 0.00 0.00 3.91
526 527 0.737367 TTCTGCTCGAACTGGATGCG 60.737 55.000 0.00 0.00 0.00 4.73
527 528 2.806856 CTGCTCGAACTGGATGCGC 61.807 63.158 0.00 0.00 0.00 6.09
528 529 3.567797 GCTCGAACTGGATGCGCC 61.568 66.667 4.18 0.00 37.10 6.53
529 530 2.185350 CTCGAACTGGATGCGCCT 59.815 61.111 4.18 0.00 37.63 5.52
530 531 1.880340 CTCGAACTGGATGCGCCTC 60.880 63.158 4.18 3.99 37.63 4.70
531 532 2.892425 CGAACTGGATGCGCCTCC 60.892 66.667 23.29 23.29 37.63 4.30
532 533 2.514824 GAACTGGATGCGCCTCCC 60.515 66.667 26.28 14.98 37.63 4.30
533 534 3.329542 GAACTGGATGCGCCTCCCA 62.330 63.158 26.28 18.48 37.63 4.37
534 535 3.628646 AACTGGATGCGCCTCCCAC 62.629 63.158 26.28 5.00 37.63 4.61
535 536 4.864334 CTGGATGCGCCTCCCACC 62.864 72.222 26.28 11.11 37.63 4.61
544 545 4.838152 CCTCCCACCGCCGATGTG 62.838 72.222 0.00 0.00 0.00 3.21
551 552 2.126502 CCGCCGATGTGGTTTTGC 60.127 61.111 0.00 0.00 41.21 3.68
552 553 2.625823 CCGCCGATGTGGTTTTGCT 61.626 57.895 0.00 0.00 41.21 3.91
553 554 1.302383 CCGCCGATGTGGTTTTGCTA 61.302 55.000 0.00 0.00 41.21 3.49
554 555 0.096976 CGCCGATGTGGTTTTGCTAG 59.903 55.000 0.00 0.00 41.21 3.42
555 556 1.448985 GCCGATGTGGTTTTGCTAGA 58.551 50.000 0.00 0.00 41.21 2.43
556 557 1.810151 GCCGATGTGGTTTTGCTAGAA 59.190 47.619 0.00 0.00 41.21 2.10
557 558 2.414161 GCCGATGTGGTTTTGCTAGAAC 60.414 50.000 0.00 0.00 41.21 3.01
558 559 2.161609 CCGATGTGGTTTTGCTAGAACC 59.838 50.000 5.13 5.13 45.39 3.62
566 567 5.644977 GGTTTTGCTAGAACCAGCTTTAT 57.355 39.130 6.90 0.00 44.71 1.40
567 568 5.402398 GGTTTTGCTAGAACCAGCTTTATG 58.598 41.667 6.90 0.00 44.71 1.90
568 569 5.048013 GGTTTTGCTAGAACCAGCTTTATGT 60.048 40.000 6.90 0.00 44.71 2.29
569 570 6.447162 GTTTTGCTAGAACCAGCTTTATGTT 58.553 36.000 0.00 0.00 42.30 2.71
570 571 6.648879 TTTGCTAGAACCAGCTTTATGTTT 57.351 33.333 0.00 0.00 42.30 2.83
571 572 6.648879 TTGCTAGAACCAGCTTTATGTTTT 57.351 33.333 0.00 0.00 42.30 2.43
572 573 6.012658 TGCTAGAACCAGCTTTATGTTTTG 57.987 37.500 0.00 0.00 42.30 2.44
573 574 4.859245 GCTAGAACCAGCTTTATGTTTTGC 59.141 41.667 0.00 0.00 38.57 3.68
574 575 5.335976 GCTAGAACCAGCTTTATGTTTTGCT 60.336 40.000 0.00 0.00 38.57 3.91
580 581 4.874970 CAGCTTTATGTTTTGCTGGAACT 58.125 39.130 5.98 0.00 46.24 3.01
581 582 5.291971 CAGCTTTATGTTTTGCTGGAACTT 58.708 37.500 5.98 0.00 46.24 2.66
582 583 5.176223 CAGCTTTATGTTTTGCTGGAACTTG 59.824 40.000 5.98 0.00 46.24 3.16
583 584 4.084380 GCTTTATGTTTTGCTGGAACTTGC 60.084 41.667 0.00 0.00 0.00 4.01
584 585 4.935352 TTATGTTTTGCTGGAACTTGCT 57.065 36.364 0.00 0.00 0.00 3.91
585 586 6.398234 TTTATGTTTTGCTGGAACTTGCTA 57.602 33.333 0.00 0.00 0.00 3.49
586 587 3.988379 TGTTTTGCTGGAACTTGCTAG 57.012 42.857 0.00 0.00 0.00 3.42
587 588 3.287222 TGTTTTGCTGGAACTTGCTAGT 58.713 40.909 0.00 0.00 35.68 2.57
589 590 4.884744 TGTTTTGCTGGAACTTGCTAGTTA 59.115 37.500 13.60 0.00 44.51 2.24
590 591 5.358442 TGTTTTGCTGGAACTTGCTAGTTAA 59.642 36.000 13.60 4.84 44.51 2.01
591 592 6.040391 TGTTTTGCTGGAACTTGCTAGTTAAT 59.960 34.615 13.60 0.00 44.51 1.40
592 593 6.648879 TTTGCTGGAACTTGCTAGTTAATT 57.351 33.333 13.60 0.00 44.51 1.40
593 594 6.648879 TTGCTGGAACTTGCTAGTTAATTT 57.351 33.333 13.60 0.00 44.51 1.82
594 595 6.648879 TGCTGGAACTTGCTAGTTAATTTT 57.351 33.333 13.60 0.00 44.51 1.82
595 596 7.049799 TGCTGGAACTTGCTAGTTAATTTTT 57.950 32.000 13.60 0.00 44.51 1.94
645 646 8.695456 AGATTTTTCTACATTGACTTTGTTGGT 58.305 29.630 0.00 0.00 0.00 3.67
646 647 8.647143 ATTTTTCTACATTGACTTTGTTGGTG 57.353 30.769 0.00 0.00 0.00 4.17
647 648 7.397892 TTTTCTACATTGACTTTGTTGGTGA 57.602 32.000 0.00 0.00 0.00 4.02
648 649 7.581213 TTTCTACATTGACTTTGTTGGTGAT 57.419 32.000 0.00 0.00 0.00 3.06
649 650 7.581213 TTCTACATTGACTTTGTTGGTGATT 57.419 32.000 0.00 0.00 0.00 2.57
650 651 7.581213 TCTACATTGACTTTGTTGGTGATTT 57.419 32.000 0.00 0.00 0.00 2.17
651 652 8.006298 TCTACATTGACTTTGTTGGTGATTTT 57.994 30.769 0.00 0.00 0.00 1.82
652 653 8.474025 TCTACATTGACTTTGTTGGTGATTTTT 58.526 29.630 0.00 0.00 0.00 1.94
653 654 9.743057 CTACATTGACTTTGTTGGTGATTTTTA 57.257 29.630 0.00 0.00 0.00 1.52
655 656 9.612066 ACATTGACTTTGTTGGTGATTTTTATT 57.388 25.926 0.00 0.00 0.00 1.40
659 660 8.394121 TGACTTTGTTGGTGATTTTTATTTTGC 58.606 29.630 0.00 0.00 0.00 3.68
660 661 7.702386 ACTTTGTTGGTGATTTTTATTTTGCC 58.298 30.769 0.00 0.00 0.00 4.52
661 662 5.914085 TGTTGGTGATTTTTATTTTGCCG 57.086 34.783 0.00 0.00 0.00 5.69
662 663 5.601662 TGTTGGTGATTTTTATTTTGCCGA 58.398 33.333 0.00 0.00 0.00 5.54
663 664 5.463724 TGTTGGTGATTTTTATTTTGCCGAC 59.536 36.000 0.00 0.00 0.00 4.79
664 665 4.561105 TGGTGATTTTTATTTTGCCGACC 58.439 39.130 0.00 0.00 0.00 4.79
665 666 3.610677 GGTGATTTTTATTTTGCCGACCG 59.389 43.478 0.00 0.00 0.00 4.79
666 667 3.610677 GTGATTTTTATTTTGCCGACCGG 59.389 43.478 0.00 0.00 38.57 5.28
708 709 5.294734 TGCTAAATGATGATGACAGGCTA 57.705 39.130 0.00 0.00 0.00 3.93
744 745 2.997897 AGGCCCTCCTCGTGTGTC 60.998 66.667 0.00 0.00 38.72 3.67
748 749 2.262915 CCTCCTCGTGTGTCTGCC 59.737 66.667 0.00 0.00 0.00 4.85
750 751 4.357947 TCCTCGTGTGTCTGCCGC 62.358 66.667 0.00 0.00 0.00 6.53
774 775 1.040893 ACATATCCACCGTCCGCTGA 61.041 55.000 0.00 0.00 0.00 4.26
775 776 0.597637 CATATCCACCGTCCGCTGAC 60.598 60.000 0.00 0.00 38.18 3.51
790 792 2.049985 GACCGATCAGCGATCCGG 60.050 66.667 18.05 18.05 44.57 5.14
833 846 3.496130 CACGCCTGCTATTTTAGATCTGG 59.504 47.826 5.18 0.00 0.00 3.86
834 847 3.070018 CGCCTGCTATTTTAGATCTGGG 58.930 50.000 5.18 0.00 0.00 4.45
835 848 2.816672 GCCTGCTATTTTAGATCTGGGC 59.183 50.000 5.18 1.42 0.00 5.36
836 849 3.748668 GCCTGCTATTTTAGATCTGGGCA 60.749 47.826 5.18 5.82 36.31 5.36
837 850 4.464008 CCTGCTATTTTAGATCTGGGCAA 58.536 43.478 5.18 0.00 0.00 4.52
838 851 4.889409 CCTGCTATTTTAGATCTGGGCAAA 59.111 41.667 5.18 0.00 0.00 3.68
840 853 6.455360 TGCTATTTTAGATCTGGGCAAAAG 57.545 37.500 5.18 0.00 0.00 2.27
935 979 3.845259 CTAACCCTAGCCGCGCCA 61.845 66.667 0.00 0.00 0.00 5.69
1062 1158 3.536917 CCCCACGATGAGGCGCTA 61.537 66.667 7.64 0.00 33.86 4.26
1063 1159 2.737180 CCCACGATGAGGCGCTAT 59.263 61.111 7.64 0.00 33.86 2.97
1064 1160 1.373497 CCCACGATGAGGCGCTATC 60.373 63.158 7.64 6.80 33.86 2.08
1065 1161 1.373497 CCACGATGAGGCGCTATCC 60.373 63.158 7.64 0.00 33.86 2.59
1066 1162 1.730902 CACGATGAGGCGCTATCCG 60.731 63.158 7.64 8.61 40.75 4.18
2061 2558 2.343484 TCGTGGACCATCGACTAGAT 57.657 50.000 13.06 0.00 41.01 1.98
2107 2613 5.220381 GTGTTGACATGAAGAGTAACGAGA 58.780 41.667 0.00 0.00 0.00 4.04
2194 2707 3.350219 ACCGACAGCATTTACAGGATT 57.650 42.857 0.00 0.00 0.00 3.01
2390 3315 7.699812 GCTTCATACTTGCTAATTGAAAAGGAG 59.300 37.037 0.00 0.00 0.00 3.69
2638 3890 3.716431 AGATTTGATGACCTGGGCATTT 58.284 40.909 17.88 0.00 0.00 2.32
2756 4019 0.181114 AACCAGAGCTGAACACTGCA 59.819 50.000 0.00 0.00 35.81 4.41
2850 4115 0.900421 TCACAGCATCCTGGACTGAG 59.100 55.000 18.21 11.86 43.53 3.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 6.691754 TTTGGGAAAAAGGCAGAAAAATTC 57.308 33.333 0.00 0.00 0.00 2.17
7 8 6.095300 CAGTTTTGGGAAAAAGGCAGAAAAAT 59.905 34.615 0.00 0.00 31.13 1.82
86 87 3.281727 TTTATAGTCCAGCCAGCCTTG 57.718 47.619 0.00 0.00 0.00 3.61
87 88 4.316025 TTTTTATAGTCCAGCCAGCCTT 57.684 40.909 0.00 0.00 0.00 4.35
132 133 9.804977 ATTAGCCAAAAGATCAGAGCTAAATAT 57.195 29.630 15.13 2.71 43.65 1.28
134 135 9.804977 ATATTAGCCAAAAGATCAGAGCTAAAT 57.195 29.630 15.13 9.87 43.65 1.40
135 136 9.632638 AATATTAGCCAAAAGATCAGAGCTAAA 57.367 29.630 15.13 8.65 43.65 1.85
136 137 9.632638 AAATATTAGCCAAAAGATCAGAGCTAA 57.367 29.630 14.12 14.12 44.30 3.09
137 138 9.632638 AAAATATTAGCCAAAAGATCAGAGCTA 57.367 29.630 0.00 0.00 0.00 3.32
138 139 8.530804 AAAATATTAGCCAAAAGATCAGAGCT 57.469 30.769 0.00 0.00 0.00 4.09
162 163 9.707957 ACCACATATCCTGTAATTGGAAAATAA 57.292 29.630 0.00 0.00 35.91 1.40
163 164 9.130661 CACCACATATCCTGTAATTGGAAAATA 57.869 33.333 0.00 0.00 35.91 1.40
164 165 7.619302 ACACCACATATCCTGTAATTGGAAAAT 59.381 33.333 0.00 0.00 35.91 1.82
165 166 6.951198 ACACCACATATCCTGTAATTGGAAAA 59.049 34.615 0.00 0.00 35.91 2.29
166 167 6.489603 ACACCACATATCCTGTAATTGGAAA 58.510 36.000 0.00 0.00 35.91 3.13
167 168 6.073447 ACACCACATATCCTGTAATTGGAA 57.927 37.500 0.00 0.00 35.91 3.53
168 169 5.190726 TGACACCACATATCCTGTAATTGGA 59.809 40.000 0.00 0.00 35.91 3.53
169 170 5.296780 GTGACACCACATATCCTGTAATTGG 59.703 44.000 0.00 0.00 42.72 3.16
170 171 5.006649 CGTGACACCACATATCCTGTAATTG 59.993 44.000 0.00 0.00 43.34 2.32
171 172 5.105106 TCGTGACACCACATATCCTGTAATT 60.105 40.000 0.00 0.00 43.34 1.40
172 173 4.404394 TCGTGACACCACATATCCTGTAAT 59.596 41.667 0.00 0.00 43.34 1.89
173 174 3.764972 TCGTGACACCACATATCCTGTAA 59.235 43.478 0.00 0.00 43.34 2.41
174 175 3.358118 TCGTGACACCACATATCCTGTA 58.642 45.455 0.00 0.00 43.34 2.74
175 176 2.176045 TCGTGACACCACATATCCTGT 58.824 47.619 0.00 0.00 43.34 4.00
176 177 2.959507 TCGTGACACCACATATCCTG 57.040 50.000 0.00 0.00 43.34 3.86
177 178 4.487714 AAATCGTGACACCACATATCCT 57.512 40.909 0.00 0.00 43.34 3.24
178 179 6.861065 AATAAATCGTGACACCACATATCC 57.139 37.500 0.00 0.00 43.34 2.59
179 180 7.226720 AGGAAATAAATCGTGACACCACATATC 59.773 37.037 0.00 0.00 43.34 1.63
180 181 7.054124 AGGAAATAAATCGTGACACCACATAT 58.946 34.615 0.00 0.00 43.34 1.78
181 182 6.411376 AGGAAATAAATCGTGACACCACATA 58.589 36.000 0.00 0.00 43.34 2.29
182 183 5.253330 AGGAAATAAATCGTGACACCACAT 58.747 37.500 0.00 0.00 43.34 3.21
183 184 4.647611 AGGAAATAAATCGTGACACCACA 58.352 39.130 0.00 0.00 43.34 4.17
184 185 6.730960 TTAGGAAATAAATCGTGACACCAC 57.269 37.500 0.00 0.00 39.86 4.16
185 186 7.106890 TCATTAGGAAATAAATCGTGACACCA 58.893 34.615 0.00 0.00 0.00 4.17
186 187 7.548196 TCATTAGGAAATAAATCGTGACACC 57.452 36.000 0.00 0.00 0.00 4.16
187 188 7.634817 CGTTCATTAGGAAATAAATCGTGACAC 59.365 37.037 0.00 0.00 37.23 3.67
188 189 7.332430 ACGTTCATTAGGAAATAAATCGTGACA 59.668 33.333 0.00 0.00 37.23 3.58
189 190 7.634817 CACGTTCATTAGGAAATAAATCGTGAC 59.365 37.037 10.92 0.00 38.16 3.67
190 191 7.332430 ACACGTTCATTAGGAAATAAATCGTGA 59.668 33.333 19.20 0.00 38.61 4.35
191 192 7.461107 ACACGTTCATTAGGAAATAAATCGTG 58.539 34.615 13.57 13.57 39.66 4.35
192 193 7.605410 ACACGTTCATTAGGAAATAAATCGT 57.395 32.000 0.00 0.00 37.23 3.73
199 200 9.457436 ACCTTAATTACACGTTCATTAGGAAAT 57.543 29.630 0.00 0.00 37.23 2.17
200 201 8.851541 ACCTTAATTACACGTTCATTAGGAAA 57.148 30.769 0.00 0.00 37.23 3.13
201 202 9.369904 GTACCTTAATTACACGTTCATTAGGAA 57.630 33.333 0.00 0.00 0.00 3.36
202 203 8.530311 TGTACCTTAATTACACGTTCATTAGGA 58.470 33.333 0.00 0.00 0.00 2.94
203 204 8.706492 TGTACCTTAATTACACGTTCATTAGG 57.294 34.615 0.00 0.00 0.00 2.69
206 207 9.221933 TCAATGTACCTTAATTACACGTTCATT 57.778 29.630 0.00 0.00 32.30 2.57
207 208 8.780846 TCAATGTACCTTAATTACACGTTCAT 57.219 30.769 0.00 0.00 32.30 2.57
208 209 8.780846 ATCAATGTACCTTAATTACACGTTCA 57.219 30.769 0.00 0.00 32.30 3.18
209 210 9.698617 GAATCAATGTACCTTAATTACACGTTC 57.301 33.333 0.00 1.06 32.30 3.95
210 211 8.671028 GGAATCAATGTACCTTAATTACACGTT 58.329 33.333 0.00 0.00 32.30 3.99
211 212 8.044908 AGGAATCAATGTACCTTAATTACACGT 58.955 33.333 0.00 0.00 32.30 4.49
212 213 8.433421 AGGAATCAATGTACCTTAATTACACG 57.567 34.615 0.00 0.00 32.30 4.49
262 263 9.662947 GGAGACAAATCATCACATCATATATCA 57.337 33.333 0.00 0.00 0.00 2.15
263 264 9.887629 AGGAGACAAATCATCACATCATATATC 57.112 33.333 0.00 0.00 0.00 1.63
267 268 9.498176 CATTAGGAGACAAATCATCACATCATA 57.502 33.333 0.00 0.00 0.00 2.15
268 269 8.215736 TCATTAGGAGACAAATCATCACATCAT 58.784 33.333 0.00 0.00 0.00 2.45
269 270 7.567458 TCATTAGGAGACAAATCATCACATCA 58.433 34.615 0.00 0.00 0.00 3.07
270 271 8.442632 TTCATTAGGAGACAAATCATCACATC 57.557 34.615 0.00 0.00 0.00 3.06
271 272 8.447924 CTTCATTAGGAGACAAATCATCACAT 57.552 34.615 0.00 0.00 0.00 3.21
272 273 7.854557 CTTCATTAGGAGACAAATCATCACA 57.145 36.000 0.00 0.00 0.00 3.58
288 289 5.613360 CGAATCATTGCGCTACCTTCATTAG 60.613 44.000 9.73 0.00 0.00 1.73
289 290 4.211164 CGAATCATTGCGCTACCTTCATTA 59.789 41.667 9.73 0.00 0.00 1.90
290 291 3.002656 CGAATCATTGCGCTACCTTCATT 59.997 43.478 9.73 0.00 0.00 2.57
291 292 2.545526 CGAATCATTGCGCTACCTTCAT 59.454 45.455 9.73 0.00 0.00 2.57
292 293 1.933181 CGAATCATTGCGCTACCTTCA 59.067 47.619 9.73 0.00 0.00 3.02
293 294 1.933853 ACGAATCATTGCGCTACCTTC 59.066 47.619 9.73 4.49 0.00 3.46
294 295 2.024176 ACGAATCATTGCGCTACCTT 57.976 45.000 9.73 0.00 0.00 3.50
295 296 2.100916 ACTACGAATCATTGCGCTACCT 59.899 45.455 9.73 0.00 0.00 3.08
296 297 2.470821 ACTACGAATCATTGCGCTACC 58.529 47.619 9.73 0.00 0.00 3.18
297 298 5.630896 TTAACTACGAATCATTGCGCTAC 57.369 39.130 9.73 0.00 0.00 3.58
298 299 5.276020 CGTTTAACTACGAATCATTGCGCTA 60.276 40.000 9.73 0.00 43.99 4.26
299 300 4.491924 CGTTTAACTACGAATCATTGCGCT 60.492 41.667 9.73 0.00 43.99 5.92
300 301 3.712572 CGTTTAACTACGAATCATTGCGC 59.287 43.478 0.00 0.00 43.99 6.09
301 302 4.717299 CACGTTTAACTACGAATCATTGCG 59.283 41.667 6.69 0.00 43.99 4.85
302 303 5.614760 ACACGTTTAACTACGAATCATTGC 58.385 37.500 6.69 0.00 43.99 3.56
303 304 7.057903 CACAACACGTTTAACTACGAATCATTG 59.942 37.037 6.69 5.93 43.99 2.82
304 305 7.067116 CACAACACGTTTAACTACGAATCATT 58.933 34.615 6.69 0.00 43.99 2.57
305 306 6.347079 CCACAACACGTTTAACTACGAATCAT 60.347 38.462 6.69 0.00 43.99 2.45
306 307 5.050904 CCACAACACGTTTAACTACGAATCA 60.051 40.000 6.69 0.00 43.99 2.57
307 308 5.050837 ACCACAACACGTTTAACTACGAATC 60.051 40.000 6.69 0.00 43.99 2.52
308 309 4.810491 ACCACAACACGTTTAACTACGAAT 59.190 37.500 6.69 0.00 43.99 3.34
309 310 4.032672 CACCACAACACGTTTAACTACGAA 59.967 41.667 6.69 0.00 43.99 3.85
310 311 3.551082 CACCACAACACGTTTAACTACGA 59.449 43.478 6.69 0.00 43.99 3.43
311 312 3.551082 TCACCACAACACGTTTAACTACG 59.449 43.478 0.00 0.00 46.52 3.51
312 313 5.234757 TCATCACCACAACACGTTTAACTAC 59.765 40.000 0.00 0.00 0.00 2.73
313 314 5.234757 GTCATCACCACAACACGTTTAACTA 59.765 40.000 0.00 0.00 0.00 2.24
314 315 4.034742 GTCATCACCACAACACGTTTAACT 59.965 41.667 0.00 0.00 0.00 2.24
315 316 4.034742 AGTCATCACCACAACACGTTTAAC 59.965 41.667 0.00 0.00 0.00 2.01
316 317 4.193090 AGTCATCACCACAACACGTTTAA 58.807 39.130 0.00 0.00 0.00 1.52
317 318 3.799366 AGTCATCACCACAACACGTTTA 58.201 40.909 0.00 0.00 0.00 2.01
318 319 2.639065 AGTCATCACCACAACACGTTT 58.361 42.857 0.00 0.00 0.00 3.60
319 320 2.325583 AGTCATCACCACAACACGTT 57.674 45.000 0.00 0.00 0.00 3.99
320 321 3.462483 TTAGTCATCACCACAACACGT 57.538 42.857 0.00 0.00 0.00 4.49
321 322 4.804608 TTTTAGTCATCACCACAACACG 57.195 40.909 0.00 0.00 0.00 4.49
322 323 9.691362 AATTAATTTTAGTCATCACCACAACAC 57.309 29.630 0.00 0.00 0.00 3.32
365 366 3.686916 TGTCCCGATGTTGTATCACAA 57.313 42.857 0.00 0.00 35.42 3.33
366 367 3.686916 TTGTCCCGATGTTGTATCACA 57.313 42.857 0.00 0.00 0.00 3.58
367 368 4.271049 CAGATTGTCCCGATGTTGTATCAC 59.729 45.833 0.00 0.00 0.00 3.06
368 369 4.441792 CAGATTGTCCCGATGTTGTATCA 58.558 43.478 0.00 0.00 0.00 2.15
369 370 3.809832 CCAGATTGTCCCGATGTTGTATC 59.190 47.826 0.00 0.00 0.00 2.24
370 371 3.199946 ACCAGATTGTCCCGATGTTGTAT 59.800 43.478 0.00 0.00 0.00 2.29
371 372 2.569853 ACCAGATTGTCCCGATGTTGTA 59.430 45.455 0.00 0.00 0.00 2.41
372 373 1.351017 ACCAGATTGTCCCGATGTTGT 59.649 47.619 0.00 0.00 0.00 3.32
373 374 2.009774 GACCAGATTGTCCCGATGTTG 58.990 52.381 0.00 0.00 0.00 3.33
374 375 2.403252 GACCAGATTGTCCCGATGTT 57.597 50.000 0.00 0.00 0.00 2.71
382 383 5.828747 CATTCATCAATGGACCAGATTGTC 58.171 41.667 0.00 0.00 36.48 3.18
383 384 5.847111 CATTCATCAATGGACCAGATTGT 57.153 39.130 0.00 0.00 36.48 2.71
394 395 5.566032 GCCACATATCCACCATTCATCAATG 60.566 44.000 0.00 0.00 39.45 2.82
395 396 4.525487 GCCACATATCCACCATTCATCAAT 59.475 41.667 0.00 0.00 0.00 2.57
396 397 3.890756 GCCACATATCCACCATTCATCAA 59.109 43.478 0.00 0.00 0.00 2.57
397 398 3.138839 AGCCACATATCCACCATTCATCA 59.861 43.478 0.00 0.00 0.00 3.07
398 399 3.504906 CAGCCACATATCCACCATTCATC 59.495 47.826 0.00 0.00 0.00 2.92
399 400 3.138839 TCAGCCACATATCCACCATTCAT 59.861 43.478 0.00 0.00 0.00 2.57
400 401 2.509131 TCAGCCACATATCCACCATTCA 59.491 45.455 0.00 0.00 0.00 2.57
401 402 3.144506 CTCAGCCACATATCCACCATTC 58.855 50.000 0.00 0.00 0.00 2.67
402 403 2.779430 TCTCAGCCACATATCCACCATT 59.221 45.455 0.00 0.00 0.00 3.16
403 404 2.411583 TCTCAGCCACATATCCACCAT 58.588 47.619 0.00 0.00 0.00 3.55
404 405 1.878211 TCTCAGCCACATATCCACCA 58.122 50.000 0.00 0.00 0.00 4.17
405 406 2.636893 AGATCTCAGCCACATATCCACC 59.363 50.000 0.00 0.00 0.00 4.61
406 407 5.474578 TTAGATCTCAGCCACATATCCAC 57.525 43.478 0.00 0.00 0.00 4.02
407 408 5.545335 ACATTAGATCTCAGCCACATATCCA 59.455 40.000 0.00 0.00 0.00 3.41
408 409 6.047511 ACATTAGATCTCAGCCACATATCC 57.952 41.667 0.00 0.00 0.00 2.59
409 410 7.877097 AGAAACATTAGATCTCAGCCACATATC 59.123 37.037 0.00 0.00 0.00 1.63
410 411 7.660617 CAGAAACATTAGATCTCAGCCACATAT 59.339 37.037 0.00 0.00 0.00 1.78
411 412 6.988580 CAGAAACATTAGATCTCAGCCACATA 59.011 38.462 0.00 0.00 0.00 2.29
412 413 5.821470 CAGAAACATTAGATCTCAGCCACAT 59.179 40.000 0.00 0.00 0.00 3.21
413 414 5.181009 CAGAAACATTAGATCTCAGCCACA 58.819 41.667 0.00 0.00 0.00 4.17
414 415 4.034975 GCAGAAACATTAGATCTCAGCCAC 59.965 45.833 0.00 0.00 0.00 5.01
415 416 4.194640 GCAGAAACATTAGATCTCAGCCA 58.805 43.478 0.00 0.00 0.00 4.75
416 417 3.563390 GGCAGAAACATTAGATCTCAGCC 59.437 47.826 0.00 0.00 0.00 4.85
417 418 4.450053 AGGCAGAAACATTAGATCTCAGC 58.550 43.478 0.00 0.00 0.00 4.26
418 419 5.668471 TGAGGCAGAAACATTAGATCTCAG 58.332 41.667 0.00 0.00 0.00 3.35
419 420 5.682234 TGAGGCAGAAACATTAGATCTCA 57.318 39.130 0.00 0.00 0.00 3.27
420 421 6.112058 AGTTGAGGCAGAAACATTAGATCTC 58.888 40.000 0.00 0.00 0.00 2.75
421 422 6.059787 AGTTGAGGCAGAAACATTAGATCT 57.940 37.500 0.00 0.00 0.00 2.75
422 423 5.006165 CGAGTTGAGGCAGAAACATTAGATC 59.994 44.000 0.00 0.00 0.00 2.75
423 424 4.872691 CGAGTTGAGGCAGAAACATTAGAT 59.127 41.667 0.00 0.00 0.00 1.98
424 425 4.245660 CGAGTTGAGGCAGAAACATTAGA 58.754 43.478 0.00 0.00 0.00 2.10
425 426 3.181516 GCGAGTTGAGGCAGAAACATTAG 60.182 47.826 0.00 0.00 0.00 1.73
426 427 2.742053 GCGAGTTGAGGCAGAAACATTA 59.258 45.455 0.00 0.00 0.00 1.90
427 428 1.537202 GCGAGTTGAGGCAGAAACATT 59.463 47.619 0.00 0.00 0.00 2.71
428 429 1.160137 GCGAGTTGAGGCAGAAACAT 58.840 50.000 0.00 0.00 0.00 2.71
429 430 0.106708 AGCGAGTTGAGGCAGAAACA 59.893 50.000 0.00 0.00 0.00 2.83
430 431 1.069636 CAAGCGAGTTGAGGCAGAAAC 60.070 52.381 0.00 0.00 38.60 2.78
431 432 1.229428 CAAGCGAGTTGAGGCAGAAA 58.771 50.000 0.00 0.00 38.60 2.52
432 433 0.106708 ACAAGCGAGTTGAGGCAGAA 59.893 50.000 5.07 0.00 38.60 3.02
433 434 0.106708 AACAAGCGAGTTGAGGCAGA 59.893 50.000 5.07 0.00 38.60 4.26
434 435 0.947244 AAACAAGCGAGTTGAGGCAG 59.053 50.000 5.07 0.00 38.60 4.85
435 436 2.248280 TAAACAAGCGAGTTGAGGCA 57.752 45.000 5.07 0.00 38.60 4.75
436 437 3.831715 ATTAAACAAGCGAGTTGAGGC 57.168 42.857 5.07 0.00 38.60 4.70
437 438 6.812160 ACTACTATTAAACAAGCGAGTTGAGG 59.188 38.462 5.07 0.00 38.60 3.86
438 439 7.201444 CCACTACTATTAAACAAGCGAGTTGAG 60.201 40.741 5.07 0.00 38.60 3.02
439 440 6.588756 CCACTACTATTAAACAAGCGAGTTGA 59.411 38.462 5.07 0.00 38.60 3.18
440 441 6.588756 TCCACTACTATTAAACAAGCGAGTTG 59.411 38.462 0.00 0.00 42.48 3.16
441 442 6.694447 TCCACTACTATTAAACAAGCGAGTT 58.306 36.000 0.00 0.00 0.00 3.01
442 443 6.276832 TCCACTACTATTAAACAAGCGAGT 57.723 37.500 0.00 0.00 0.00 4.18
443 444 6.201044 CCATCCACTACTATTAAACAAGCGAG 59.799 42.308 0.00 0.00 0.00 5.03
444 445 6.046593 CCATCCACTACTATTAAACAAGCGA 58.953 40.000 0.00 0.00 0.00 4.93
445 446 6.046593 TCCATCCACTACTATTAAACAAGCG 58.953 40.000 0.00 0.00 0.00 4.68
446 447 7.041098 CCATCCATCCACTACTATTAAACAAGC 60.041 40.741 0.00 0.00 0.00 4.01
447 448 8.210946 TCCATCCATCCACTACTATTAAACAAG 58.789 37.037 0.00 0.00 0.00 3.16
448 449 8.096621 TCCATCCATCCACTACTATTAAACAA 57.903 34.615 0.00 0.00 0.00 2.83
449 450 7.684317 TCCATCCATCCACTACTATTAAACA 57.316 36.000 0.00 0.00 0.00 2.83
450 451 7.607991 CCATCCATCCATCCACTACTATTAAAC 59.392 40.741 0.00 0.00 0.00 2.01
451 452 7.515861 TCCATCCATCCATCCACTACTATTAAA 59.484 37.037 0.00 0.00 0.00 1.52
452 453 7.022496 TCCATCCATCCATCCACTACTATTAA 58.978 38.462 0.00 0.00 0.00 1.40
453 454 6.570680 TCCATCCATCCATCCACTACTATTA 58.429 40.000 0.00 0.00 0.00 0.98
454 455 5.415065 TCCATCCATCCATCCACTACTATT 58.585 41.667 0.00 0.00 0.00 1.73
455 456 5.028678 TCCATCCATCCATCCACTACTAT 57.971 43.478 0.00 0.00 0.00 2.12
456 457 4.485653 TCCATCCATCCATCCACTACTA 57.514 45.455 0.00 0.00 0.00 1.82
457 458 3.350992 TCCATCCATCCATCCACTACT 57.649 47.619 0.00 0.00 0.00 2.57
458 459 4.437682 TTTCCATCCATCCATCCACTAC 57.562 45.455 0.00 0.00 0.00 2.73
459 460 4.202599 CCATTTCCATCCATCCATCCACTA 60.203 45.833 0.00 0.00 0.00 2.74
460 461 3.437491 CCATTTCCATCCATCCATCCACT 60.437 47.826 0.00 0.00 0.00 4.00
461 462 2.895404 CCATTTCCATCCATCCATCCAC 59.105 50.000 0.00 0.00 0.00 4.02
462 463 2.790585 TCCATTTCCATCCATCCATCCA 59.209 45.455 0.00 0.00 0.00 3.41
463 464 3.074985 TCTCCATTTCCATCCATCCATCC 59.925 47.826 0.00 0.00 0.00 3.51
464 465 4.377762 TCTCCATTTCCATCCATCCATC 57.622 45.455 0.00 0.00 0.00 3.51
465 466 4.510386 CCATCTCCATTTCCATCCATCCAT 60.510 45.833 0.00 0.00 0.00 3.41
466 467 3.181426 CCATCTCCATTTCCATCCATCCA 60.181 47.826 0.00 0.00 0.00 3.41
467 468 3.074985 TCCATCTCCATTTCCATCCATCC 59.925 47.826 0.00 0.00 0.00 3.51
468 469 4.042560 TCTCCATCTCCATTTCCATCCATC 59.957 45.833 0.00 0.00 0.00 3.51
469 470 3.985452 TCTCCATCTCCATTTCCATCCAT 59.015 43.478 0.00 0.00 0.00 3.41
470 471 3.396565 TCTCCATCTCCATTTCCATCCA 58.603 45.455 0.00 0.00 0.00 3.41
471 472 4.654389 ATCTCCATCTCCATTTCCATCC 57.346 45.455 0.00 0.00 0.00 3.51
472 473 5.278858 GCAAATCTCCATCTCCATTTCCATC 60.279 44.000 0.00 0.00 0.00 3.51
473 474 4.587684 GCAAATCTCCATCTCCATTTCCAT 59.412 41.667 0.00 0.00 0.00 3.41
474 475 3.956199 GCAAATCTCCATCTCCATTTCCA 59.044 43.478 0.00 0.00 0.00 3.53
475 476 4.213513 AGCAAATCTCCATCTCCATTTCC 58.786 43.478 0.00 0.00 0.00 3.13
476 477 5.221204 GGAAGCAAATCTCCATCTCCATTTC 60.221 44.000 0.00 0.00 0.00 2.17
477 478 4.648307 GGAAGCAAATCTCCATCTCCATTT 59.352 41.667 0.00 0.00 0.00 2.32
478 479 4.079327 AGGAAGCAAATCTCCATCTCCATT 60.079 41.667 0.00 0.00 0.00 3.16
479 480 3.462579 AGGAAGCAAATCTCCATCTCCAT 59.537 43.478 0.00 0.00 0.00 3.41
480 481 2.848694 AGGAAGCAAATCTCCATCTCCA 59.151 45.455 0.00 0.00 0.00 3.86
481 482 3.212685 CAGGAAGCAAATCTCCATCTCC 58.787 50.000 0.00 0.00 0.00 3.71
482 483 3.626670 CACAGGAAGCAAATCTCCATCTC 59.373 47.826 0.00 0.00 0.00 2.75
483 484 3.265221 TCACAGGAAGCAAATCTCCATCT 59.735 43.478 0.00 0.00 0.00 2.90
484 485 3.614092 TCACAGGAAGCAAATCTCCATC 58.386 45.455 0.00 0.00 0.00 3.51
485 486 3.726557 TCACAGGAAGCAAATCTCCAT 57.273 42.857 0.00 0.00 0.00 3.41
486 487 3.726557 ATCACAGGAAGCAAATCTCCA 57.273 42.857 0.00 0.00 0.00 3.86
487 488 4.704057 AGAAATCACAGGAAGCAAATCTCC 59.296 41.667 0.00 0.00 0.00 3.71
488 489 5.638783 CAGAAATCACAGGAAGCAAATCTC 58.361 41.667 0.00 0.00 0.00 2.75
489 490 4.082354 GCAGAAATCACAGGAAGCAAATCT 60.082 41.667 0.00 0.00 0.00 2.40
490 491 4.082354 AGCAGAAATCACAGGAAGCAAATC 60.082 41.667 0.00 0.00 0.00 2.17
491 492 3.830755 AGCAGAAATCACAGGAAGCAAAT 59.169 39.130 0.00 0.00 0.00 2.32
492 493 3.225104 AGCAGAAATCACAGGAAGCAAA 58.775 40.909 0.00 0.00 0.00 3.68
493 494 2.816087 GAGCAGAAATCACAGGAAGCAA 59.184 45.455 0.00 0.00 0.00 3.91
494 495 2.430465 GAGCAGAAATCACAGGAAGCA 58.570 47.619 0.00 0.00 0.00 3.91
495 496 1.396301 CGAGCAGAAATCACAGGAAGC 59.604 52.381 0.00 0.00 0.00 3.86
496 497 2.964740 TCGAGCAGAAATCACAGGAAG 58.035 47.619 0.00 0.00 0.00 3.46
497 498 3.067106 GTTCGAGCAGAAATCACAGGAA 58.933 45.455 0.00 0.00 41.10 3.36
498 499 2.300152 AGTTCGAGCAGAAATCACAGGA 59.700 45.455 1.01 0.00 41.10 3.86
499 500 2.414481 CAGTTCGAGCAGAAATCACAGG 59.586 50.000 1.01 0.00 41.10 4.00
500 501 2.414481 CCAGTTCGAGCAGAAATCACAG 59.586 50.000 1.01 0.00 41.10 3.66
501 502 2.037121 TCCAGTTCGAGCAGAAATCACA 59.963 45.455 1.01 0.00 41.10 3.58
502 503 2.688507 TCCAGTTCGAGCAGAAATCAC 58.311 47.619 1.01 0.00 41.10 3.06
503 504 3.264947 CATCCAGTTCGAGCAGAAATCA 58.735 45.455 1.01 0.00 41.10 2.57
504 505 2.031437 GCATCCAGTTCGAGCAGAAATC 59.969 50.000 1.01 0.00 41.10 2.17
505 506 2.012673 GCATCCAGTTCGAGCAGAAAT 58.987 47.619 1.01 0.00 41.10 2.17
506 507 1.442769 GCATCCAGTTCGAGCAGAAA 58.557 50.000 1.01 0.00 41.10 2.52
507 508 0.737367 CGCATCCAGTTCGAGCAGAA 60.737 55.000 1.01 0.00 36.31 3.02
508 509 1.153765 CGCATCCAGTTCGAGCAGA 60.154 57.895 1.01 0.00 0.00 4.26
509 510 2.806856 GCGCATCCAGTTCGAGCAG 61.807 63.158 0.30 0.00 0.00 4.24
510 511 2.815211 GCGCATCCAGTTCGAGCA 60.815 61.111 0.30 0.00 0.00 4.26
511 512 3.567797 GGCGCATCCAGTTCGAGC 61.568 66.667 10.83 0.00 34.01 5.03
512 513 1.880340 GAGGCGCATCCAGTTCGAG 60.880 63.158 11.78 0.00 37.29 4.04
513 514 2.184322 GAGGCGCATCCAGTTCGA 59.816 61.111 11.78 0.00 37.29 3.71
514 515 2.892425 GGAGGCGCATCCAGTTCG 60.892 66.667 34.54 0.00 39.34 3.95
515 516 2.514824 GGGAGGCGCATCCAGTTC 60.515 66.667 38.55 20.24 41.52 3.01
516 517 3.329889 TGGGAGGCGCATCCAGTT 61.330 61.111 38.55 1.43 41.52 3.16
517 518 4.101448 GTGGGAGGCGCATCCAGT 62.101 66.667 38.55 2.12 41.52 4.00
518 519 4.864334 GGTGGGAGGCGCATCCAG 62.864 72.222 38.55 0.00 41.52 3.86
527 528 4.838152 CACATCGGCGGTGGGAGG 62.838 72.222 25.56 7.04 32.65 4.30
532 533 1.081509 CAAAACCACATCGGCGGTG 60.082 57.895 20.23 20.23 39.03 4.94
533 534 2.914908 GCAAAACCACATCGGCGGT 61.915 57.895 7.21 0.00 39.03 5.68
534 535 1.302383 TAGCAAAACCACATCGGCGG 61.302 55.000 7.21 0.00 39.03 6.13
535 536 0.096976 CTAGCAAAACCACATCGGCG 59.903 55.000 0.00 0.00 39.03 6.46
536 537 1.448985 TCTAGCAAAACCACATCGGC 58.551 50.000 0.00 0.00 39.03 5.54
537 538 2.161609 GGTTCTAGCAAAACCACATCGG 59.838 50.000 6.90 0.00 44.61 4.18
538 539 3.471495 GGTTCTAGCAAAACCACATCG 57.529 47.619 6.90 0.00 44.61 3.84
544 545 5.048013 ACATAAAGCTGGTTCTAGCAAAACC 60.048 40.000 10.48 5.13 46.07 3.27
545 546 6.013842 ACATAAAGCTGGTTCTAGCAAAAC 57.986 37.500 10.48 0.00 46.07 2.43
546 547 6.648879 AACATAAAGCTGGTTCTAGCAAAA 57.351 33.333 10.48 0.00 46.07 2.44
547 548 6.648879 AAACATAAAGCTGGTTCTAGCAAA 57.351 33.333 10.48 0.00 46.07 3.68
548 549 6.446318 CAAAACATAAAGCTGGTTCTAGCAA 58.554 36.000 10.48 0.00 46.07 3.91
549 550 5.564651 GCAAAACATAAAGCTGGTTCTAGCA 60.565 40.000 10.48 0.00 46.07 3.49
550 551 4.859245 GCAAAACATAAAGCTGGTTCTAGC 59.141 41.667 0.00 0.00 44.01 3.42
551 552 6.259550 AGCAAAACATAAAGCTGGTTCTAG 57.740 37.500 0.00 0.00 35.72 2.43
559 560 5.291971 CAAGTTCCAGCAAAACATAAAGCT 58.708 37.500 0.00 0.00 37.95 3.74
560 561 4.084380 GCAAGTTCCAGCAAAACATAAAGC 60.084 41.667 0.00 0.00 0.00 3.51
561 562 5.291971 AGCAAGTTCCAGCAAAACATAAAG 58.708 37.500 0.00 0.00 0.00 1.85
562 563 5.275067 AGCAAGTTCCAGCAAAACATAAA 57.725 34.783 0.00 0.00 0.00 1.40
563 564 4.935352 AGCAAGTTCCAGCAAAACATAA 57.065 36.364 0.00 0.00 0.00 1.90
564 565 5.070001 ACTAGCAAGTTCCAGCAAAACATA 58.930 37.500 0.00 0.00 29.00 2.29
565 566 3.891366 ACTAGCAAGTTCCAGCAAAACAT 59.109 39.130 0.00 0.00 29.00 2.71
566 567 3.287222 ACTAGCAAGTTCCAGCAAAACA 58.713 40.909 0.00 0.00 29.00 2.83
567 568 3.990318 ACTAGCAAGTTCCAGCAAAAC 57.010 42.857 0.00 0.00 29.00 2.43
568 569 6.648879 ATTAACTAGCAAGTTCCAGCAAAA 57.351 33.333 0.00 0.00 42.42 2.44
569 570 6.648879 AATTAACTAGCAAGTTCCAGCAAA 57.351 33.333 0.00 0.00 42.42 3.68
570 571 6.648879 AAATTAACTAGCAAGTTCCAGCAA 57.351 33.333 0.00 0.00 42.42 3.91
571 572 6.648879 AAAATTAACTAGCAAGTTCCAGCA 57.351 33.333 0.00 0.00 42.42 4.41
619 620 8.695456 ACCAACAAAGTCAATGTAGAAAAATCT 58.305 29.630 0.00 0.00 0.00 2.40
620 621 8.755018 CACCAACAAAGTCAATGTAGAAAAATC 58.245 33.333 0.00 0.00 0.00 2.17
621 622 8.474025 TCACCAACAAAGTCAATGTAGAAAAAT 58.526 29.630 0.00 0.00 0.00 1.82
622 623 7.831753 TCACCAACAAAGTCAATGTAGAAAAA 58.168 30.769 0.00 0.00 0.00 1.94
623 624 7.397892 TCACCAACAAAGTCAATGTAGAAAA 57.602 32.000 0.00 0.00 0.00 2.29
624 625 7.581213 ATCACCAACAAAGTCAATGTAGAAA 57.419 32.000 0.00 0.00 0.00 2.52
625 626 7.581213 AATCACCAACAAAGTCAATGTAGAA 57.419 32.000 0.00 0.00 0.00 2.10
626 627 7.581213 AAATCACCAACAAAGTCAATGTAGA 57.419 32.000 0.00 0.00 0.00 2.59
627 628 8.647143 AAAAATCACCAACAAAGTCAATGTAG 57.353 30.769 0.00 0.00 0.00 2.74
629 630 9.612066 AATAAAAATCACCAACAAAGTCAATGT 57.388 25.926 0.00 0.00 0.00 2.71
633 634 8.394121 GCAAAATAAAAATCACCAACAAAGTCA 58.606 29.630 0.00 0.00 0.00 3.41
634 635 7.855409 GGCAAAATAAAAATCACCAACAAAGTC 59.145 33.333 0.00 0.00 0.00 3.01
635 636 7.466590 CGGCAAAATAAAAATCACCAACAAAGT 60.467 33.333 0.00 0.00 0.00 2.66
636 637 6.850317 CGGCAAAATAAAAATCACCAACAAAG 59.150 34.615 0.00 0.00 0.00 2.77
637 638 6.538742 TCGGCAAAATAAAAATCACCAACAAA 59.461 30.769 0.00 0.00 0.00 2.83
638 639 6.018669 GTCGGCAAAATAAAAATCACCAACAA 60.019 34.615 0.00 0.00 0.00 2.83
639 640 5.463724 GTCGGCAAAATAAAAATCACCAACA 59.536 36.000 0.00 0.00 0.00 3.33
640 641 5.107259 GGTCGGCAAAATAAAAATCACCAAC 60.107 40.000 0.00 0.00 0.00 3.77
641 642 4.991687 GGTCGGCAAAATAAAAATCACCAA 59.008 37.500 0.00 0.00 0.00 3.67
642 643 4.561105 GGTCGGCAAAATAAAAATCACCA 58.439 39.130 0.00 0.00 0.00 4.17
643 644 3.610677 CGGTCGGCAAAATAAAAATCACC 59.389 43.478 0.00 0.00 0.00 4.02
644 645 3.610677 CCGGTCGGCAAAATAAAAATCAC 59.389 43.478 0.00 0.00 0.00 3.06
645 646 3.839293 CCGGTCGGCAAAATAAAAATCA 58.161 40.909 0.00 0.00 0.00 2.57
668 669 2.105328 AAAAACCGCACGTTGGGC 59.895 55.556 8.38 0.00 33.93 5.36
682 683 6.071221 AGCCTGTCATCATCATTTAGCAAAAA 60.071 34.615 0.00 0.00 0.00 1.94
683 684 5.419788 AGCCTGTCATCATCATTTAGCAAAA 59.580 36.000 0.00 0.00 0.00 2.44
693 694 4.701651 CCAAGTTTTAGCCTGTCATCATCA 59.298 41.667 0.00 0.00 0.00 3.07
699 700 1.616159 GCCCAAGTTTTAGCCTGTCA 58.384 50.000 0.00 0.00 0.00 3.58
700 701 0.888619 GGCCCAAGTTTTAGCCTGTC 59.111 55.000 0.00 0.00 42.34 3.51
701 702 0.893727 CGGCCCAAGTTTTAGCCTGT 60.894 55.000 0.00 0.00 43.48 4.00
708 709 1.040339 TGCAGTTCGGCCCAAGTTTT 61.040 50.000 0.00 0.00 0.00 2.43
744 745 1.726791 GTGGATATGTTATCGCGGCAG 59.273 52.381 6.13 0.00 0.00 4.85
748 749 1.983605 GACGGTGGATATGTTATCGCG 59.016 52.381 0.00 0.00 0.00 5.87
750 751 2.592194 CGGACGGTGGATATGTTATCG 58.408 52.381 0.00 0.00 0.00 2.92
774 775 3.606662 CCCGGATCGCTGATCGGT 61.607 66.667 0.73 0.00 39.72 4.69
800 802 3.003763 AGGCGTGAAGGGGGAGAC 61.004 66.667 0.00 0.00 0.00 3.36
804 806 2.270874 AATAGCAGGCGTGAAGGGGG 62.271 60.000 11.29 0.00 0.00 5.40
805 807 0.394352 AAATAGCAGGCGTGAAGGGG 60.394 55.000 11.29 0.00 0.00 4.79
844 857 1.539124 AGGAAGGAGAAGCCGGGTT 60.539 57.895 20.91 20.91 43.43 4.11
846 859 2.904131 GAGGAAGGAGAAGCCGGG 59.096 66.667 2.18 0.00 43.43 5.73
847 860 2.496817 CGAGGAAGGAGAAGCCGG 59.503 66.667 0.00 0.00 43.43 6.13
848 861 2.202810 GCGAGGAAGGAGAAGCCG 60.203 66.667 0.00 0.00 43.43 5.52
935 979 0.926293 ATTTGGGGATCGATGGTGGT 59.074 50.000 0.54 0.00 0.00 4.16
1058 1154 3.426117 AACTGTCGGCCGGATAGCG 62.426 63.158 27.83 10.56 37.39 4.26
1059 1155 1.591863 GAACTGTCGGCCGGATAGC 60.592 63.158 27.83 11.19 37.39 2.97
1060 1156 1.067582 GGAACTGTCGGCCGGATAG 59.932 63.158 27.83 22.05 39.58 2.08
1061 1157 2.777972 CGGAACTGTCGGCCGGATA 61.778 63.158 27.83 11.08 41.29 2.59
1062 1158 4.143333 CGGAACTGTCGGCCGGAT 62.143 66.667 27.83 3.33 41.29 4.18
2061 2558 4.335315 CGAAGCAAATACTGGCCTTTATGA 59.665 41.667 3.32 0.00 0.00 2.15
2107 2613 1.062275 AGGCTGTGGAGAGATCTGGAT 60.062 52.381 0.00 0.00 0.00 3.41
2194 2707 0.899717 GGTGGTGGTAGTACCGGTCA 60.900 60.000 12.40 0.00 42.58 4.02
2343 3104 6.239217 AGCAAAGTGGATGTGATACTGATA 57.761 37.500 0.00 0.00 0.00 2.15
2344 3105 5.108187 AGCAAAGTGGATGTGATACTGAT 57.892 39.130 0.00 0.00 0.00 2.90
2345 3106 4.558226 AGCAAAGTGGATGTGATACTGA 57.442 40.909 0.00 0.00 0.00 3.41
2346 3107 4.696877 TGAAGCAAAGTGGATGTGATACTG 59.303 41.667 0.00 0.00 0.00 2.74
2347 3108 4.910195 TGAAGCAAAGTGGATGTGATACT 58.090 39.130 0.00 0.00 0.00 2.12
2348 3109 5.824904 ATGAAGCAAAGTGGATGTGATAC 57.175 39.130 0.00 0.00 0.00 2.24
2390 3315 0.967380 CCTGGTGAGGTGGCCAAATC 60.967 60.000 7.24 9.56 34.16 2.17
2638 3890 4.160814 ACAGGTACGCTGTTATATTCACCA 59.839 41.667 10.21 0.00 0.00 4.17
2756 4019 7.572523 TTGACATCTTCAATTCAGACACTTT 57.427 32.000 0.00 0.00 39.45 2.66
2850 4115 5.580691 GGCAAAACCAATAAAATGTCTAGGC 59.419 40.000 0.00 0.00 38.86 3.93
2884 4179 7.382110 AGGTTGAGTACATATGCAGTGATATC 58.618 38.462 1.58 0.00 0.00 1.63
3004 4313 2.697751 GCTTCTATCTCTCTCTGGCCAA 59.302 50.000 7.01 0.00 0.00 4.52
3005 4314 2.315176 GCTTCTATCTCTCTCTGGCCA 58.685 52.381 4.71 4.71 0.00 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.