Multiple sequence alignment - TraesCS2B01G026000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G026000 chr2B 100.000 4074 0 0 1 4074 11982831 11986904 0.000000e+00 7524.0
1 TraesCS2B01G026000 chr2B 82.825 1770 185 58 1648 3370 12027083 12025386 0.000000e+00 1474.0
2 TraesCS2B01G026000 chr2B 83.042 1203 150 27 1861 3035 12077537 12076361 0.000000e+00 1042.0
3 TraesCS2B01G026000 chr2B 76.256 1314 191 63 1866 3111 70882007 70880747 1.630000e-163 586.0
4 TraesCS2B01G026000 chr2B 84.923 325 30 13 3010 3332 70880552 70880245 1.100000e-80 311.0
5 TraesCS2B01G026000 chr2B 87.349 166 14 5 1312 1473 85072243 85072405 2.500000e-42 183.0
6 TraesCS2B01G026000 chr2D 94.408 1538 46 8 1566 3086 8983279 8981765 0.000000e+00 2327.0
7 TraesCS2B01G026000 chr2D 84.091 836 93 22 1648 2477 8716060 8716861 0.000000e+00 771.0
8 TraesCS2B01G026000 chr2D 75.695 1798 285 76 1648 3370 8888871 8890591 0.000000e+00 760.0
9 TraesCS2B01G026000 chr2D 80.343 875 111 32 2510 3370 8716966 8717793 1.250000e-169 606.0
10 TraesCS2B01G026000 chr2D 89.137 313 24 3 1241 1546 8983670 8983361 8.260000e-102 381.0
11 TraesCS2B01G026000 chr2D 74.277 933 138 53 1648 2550 8920163 8921023 2.380000e-77 300.0
12 TraesCS2B01G026000 chr2D 84.195 329 31 14 3007 3332 8929168 8929478 2.380000e-77 300.0
13 TraesCS2B01G026000 chr2D 88.000 75 9 0 3484 3558 627663439 627663513 5.610000e-14 89.8
14 TraesCS2B01G026000 chr2D 91.667 60 3 2 3408 3467 8929646 8929703 9.390000e-12 82.4
15 TraesCS2B01G026000 chr3D 95.447 1208 43 7 1721 2922 564006027 564004826 0.000000e+00 1916.0
16 TraesCS2B01G026000 chr3D 92.568 888 53 8 678 1553 564007098 564006212 0.000000e+00 1262.0
17 TraesCS2B01G026000 chr3D 84.674 261 27 6 3117 3370 563861320 563861574 8.740000e-62 248.0
18 TraesCS2B01G026000 chr3D 100.000 78 0 0 1611 1688 564006103 564006026 1.180000e-30 145.0
19 TraesCS2B01G026000 chr3D 100.000 33 0 0 1566 1598 564006134 564006102 1.220000e-05 62.1
20 TraesCS2B01G026000 chr2A 93.224 974 44 8 2411 3370 8045934 8046899 0.000000e+00 1413.0
21 TraesCS2B01G026000 chr2A 90.960 885 60 7 675 1546 8041756 8042633 0.000000e+00 1173.0
22 TraesCS2B01G026000 chr2A 97.511 683 14 3 1 680 420623429 420624111 0.000000e+00 1164.0
23 TraesCS2B01G026000 chr2A 90.689 827 54 12 742 1546 8371991 8371166 0.000000e+00 1079.0
24 TraesCS2B01G026000 chr2A 84.944 890 85 24 1612 2477 8371080 8370216 0.000000e+00 856.0
25 TraesCS2B01G026000 chr2A 75.362 1798 286 76 1648 3366 7806709 7808428 0.000000e+00 721.0
26 TraesCS2B01G026000 chr2A 76.602 1436 212 66 1856 3231 8182492 8181121 0.000000e+00 676.0
27 TraesCS2B01G026000 chr2A 74.560 1647 284 71 1648 3226 7919204 7920783 2.710000e-166 595.0
28 TraesCS2B01G026000 chr2A 79.475 877 109 38 2510 3370 8370153 8369332 1.280000e-154 556.0
29 TraesCS2B01G026000 chr2A 74.276 1520 248 77 1704 3150 8314974 8313525 3.630000e-140 508.0
30 TraesCS2B01G026000 chr2A 96.457 254 9 0 1805 2058 8045366 8045619 1.750000e-113 420.0
31 TraesCS2B01G026000 chr2A 96.063 254 9 1 3372 3624 8046969 8047222 2.930000e-111 412.0
32 TraesCS2B01G026000 chr2A 91.981 212 10 3 2079 2289 8045610 8045815 1.430000e-74 291.0
33 TraesCS2B01G026000 chr2A 92.391 184 14 0 675 858 8044650 8044833 3.120000e-66 263.0
34 TraesCS2B01G026000 chr2A 85.271 258 28 6 3117 3370 7921049 7921300 1.450000e-64 257.0
35 TraesCS2B01G026000 chr2A 97.351 151 4 0 3924 4074 8047211 8047361 1.450000e-64 257.0
36 TraesCS2B01G026000 chr2A 83.117 308 21 16 1247 1546 8044836 8045120 6.760000e-63 252.0
37 TraesCS2B01G026000 chr2A 93.197 147 3 1 1566 1705 8045204 8045350 4.130000e-50 209.0
38 TraesCS2B01G026000 chr2A 97.674 86 2 0 2298 2383 8045851 8045936 9.120000e-32 148.0
39 TraesCS2B01G026000 chr2A 94.521 73 4 0 678 750 8383903 8383831 3.330000e-21 113.0
40 TraesCS2B01G026000 chr2A 91.667 60 3 2 3408 3467 8180949 8180892 9.390000e-12 82.4
41 TraesCS2B01G026000 chr2A 95.455 44 2 0 3370 3413 7808885 7808928 2.030000e-08 71.3
42 TraesCS2B01G026000 chr2A 87.931 58 4 3 3414 3469 7808496 7808552 9.450000e-07 65.8
43 TraesCS2B01G026000 chr1A 98.105 686 7 6 2 683 26874535 26875218 0.000000e+00 1190.0
44 TraesCS2B01G026000 chr1A 98.088 680 7 6 2 677 26866000 26866677 0.000000e+00 1179.0
45 TraesCS2B01G026000 chr1A 84.358 179 21 5 1312 1489 388749801 388749973 7.000000e-38 169.0
46 TraesCS2B01G026000 chr7A 97.791 679 13 2 1 677 73845944 73846622 0.000000e+00 1170.0
47 TraesCS2B01G026000 chr7A 97.654 682 13 3 1 679 304240793 304240112 0.000000e+00 1168.0
48 TraesCS2B01G026000 chr7A 89.981 519 28 5 2695 3209 466703178 466702680 0.000000e+00 649.0
49 TraesCS2B01G026000 chr7A 76.330 1297 189 63 1992 3222 466508137 466509381 1.630000e-163 586.0
50 TraesCS2B01G026000 chr7A 85.256 312 29 11 3007 3317 466509390 466509685 5.120000e-79 305.0
51 TraesCS2B01G026000 chr7A 91.954 87 5 2 3247 3332 466509686 466509771 1.990000e-23 121.0
52 TraesCS2B01G026000 chr7A 93.333 60 2 2 3408 3467 466509940 466509997 2.020000e-13 87.9
53 TraesCS2B01G026000 chr4A 97.525 687 12 5 1 682 374431241 374431927 0.000000e+00 1170.0
54 TraesCS2B01G026000 chr4A 93.333 45 3 0 2799 2843 46409384 46409428 2.630000e-07 67.6
55 TraesCS2B01G026000 chr1B 97.791 679 13 2 1 677 163188343 163187665 0.000000e+00 1170.0
56 TraesCS2B01G026000 chr6B 97.654 682 11 5 1 678 292426328 292427008 0.000000e+00 1166.0
57 TraesCS2B01G026000 chr6B 96.974 694 15 6 1 689 396530894 396531586 0.000000e+00 1160.0
58 TraesCS2B01G026000 chr6B 78.304 507 85 15 724 1223 47263463 47263951 1.840000e-78 303.0
59 TraesCS2B01G026000 chr6D 85.859 198 20 3 1281 1473 472236338 472236144 1.920000e-48 204.0
60 TraesCS2B01G026000 chr6A 82.873 181 23 3 1292 1466 614017693 614017515 5.450000e-34 156.0
61 TraesCS2B01G026000 chr6A 81.026 195 27 6 1284 1471 598634217 598634026 3.280000e-31 147.0
62 TraesCS2B01G026000 chr7B 86.957 69 8 1 691 759 460110075 460110008 4.370000e-10 76.8
63 TraesCS2B01G026000 chr4B 91.111 45 4 0 2799 2843 515039827 515039783 1.220000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G026000 chr2B 11982831 11986904 4073 False 7524.000000 7524 100.000000 1 4074 1 chr2B.!!$F1 4073
1 TraesCS2B01G026000 chr2B 12025386 12027083 1697 True 1474.000000 1474 82.825000 1648 3370 1 chr2B.!!$R1 1722
2 TraesCS2B01G026000 chr2B 12076361 12077537 1176 True 1042.000000 1042 83.042000 1861 3035 1 chr2B.!!$R2 1174
3 TraesCS2B01G026000 chr2B 70880245 70882007 1762 True 448.500000 586 80.589500 1866 3332 2 chr2B.!!$R3 1466
4 TraesCS2B01G026000 chr2D 8981765 8983670 1905 True 1354.000000 2327 91.772500 1241 3086 2 chr2D.!!$R1 1845
5 TraesCS2B01G026000 chr2D 8888871 8890591 1720 False 760.000000 760 75.695000 1648 3370 1 chr2D.!!$F1 1722
6 TraesCS2B01G026000 chr2D 8716060 8717793 1733 False 688.500000 771 82.217000 1648 3370 2 chr2D.!!$F4 1722
7 TraesCS2B01G026000 chr2D 8920163 8921023 860 False 300.000000 300 74.277000 1648 2550 1 chr2D.!!$F2 902
8 TraesCS2B01G026000 chr3D 564004826 564007098 2272 True 846.275000 1916 97.003750 678 2922 4 chr3D.!!$R1 2244
9 TraesCS2B01G026000 chr2A 420623429 420624111 682 False 1164.000000 1164 97.511000 1 680 1 chr2A.!!$F1 679
10 TraesCS2B01G026000 chr2A 8369332 8371991 2659 True 830.333333 1079 85.036000 742 3370 3 chr2A.!!$R4 2628
11 TraesCS2B01G026000 chr2A 8313525 8314974 1449 True 508.000000 508 74.276000 1704 3150 1 chr2A.!!$R1 1446
12 TraesCS2B01G026000 chr2A 8041756 8047361 5605 False 483.800000 1413 93.241500 675 4074 10 chr2A.!!$F4 3399
13 TraesCS2B01G026000 chr2A 7919204 7921300 2096 False 426.000000 595 79.915500 1648 3370 2 chr2A.!!$F3 1722
14 TraesCS2B01G026000 chr2A 8180892 8182492 1600 True 379.200000 676 84.134500 1856 3467 2 chr2A.!!$R3 1611
15 TraesCS2B01G026000 chr2A 7806709 7808928 2219 False 286.033333 721 86.249333 1648 3469 3 chr2A.!!$F2 1821
16 TraesCS2B01G026000 chr1A 26874535 26875218 683 False 1190.000000 1190 98.105000 2 683 1 chr1A.!!$F2 681
17 TraesCS2B01G026000 chr1A 26866000 26866677 677 False 1179.000000 1179 98.088000 2 677 1 chr1A.!!$F1 675
18 TraesCS2B01G026000 chr7A 73845944 73846622 678 False 1170.000000 1170 97.791000 1 677 1 chr7A.!!$F1 676
19 TraesCS2B01G026000 chr7A 304240112 304240793 681 True 1168.000000 1168 97.654000 1 679 1 chr7A.!!$R1 678
20 TraesCS2B01G026000 chr7A 466508137 466509997 1860 False 274.975000 586 86.718250 1992 3467 4 chr7A.!!$F2 1475
21 TraesCS2B01G026000 chr4A 374431241 374431927 686 False 1170.000000 1170 97.525000 1 682 1 chr4A.!!$F2 681
22 TraesCS2B01G026000 chr1B 163187665 163188343 678 True 1170.000000 1170 97.791000 1 677 1 chr1B.!!$R1 676
23 TraesCS2B01G026000 chr6B 292426328 292427008 680 False 1166.000000 1166 97.654000 1 678 1 chr6B.!!$F2 677
24 TraesCS2B01G026000 chr6B 396530894 396531586 692 False 1160.000000 1160 96.974000 1 689 1 chr6B.!!$F3 688

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
239 242 0.035458 CTCACGGTTGCTTTCTCCCT 59.965 55.000 0.0 0.0 0.00 4.20 F
688 697 1.541670 GGCGTCACAGTGTTTCCCTAA 60.542 52.381 0.0 0.0 0.00 2.69 F
1711 4324 0.180406 CCTCCACCCAACCCTAATCG 59.820 60.000 0.0 0.0 0.00 3.34 F
2403 5143 0.106819 GTGGATCTGCTCAAGGGCAT 60.107 55.000 0.0 0.0 41.63 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1498 1532 1.628846 ACCGCAGATCTGTTTTAGGGT 59.371 47.619 23.38 16.65 0.00 4.34 R
2380 5120 0.107312 CCTTGAGCAGATCCACCCAG 60.107 60.000 0.00 0.00 0.00 4.45 R
2674 5561 1.059913 AACCTGCAGACTGGTAGCTT 58.940 50.000 17.39 0.00 46.56 3.74 R
4006 7934 0.102844 AATCAAATCCGGCGCCAATG 59.897 50.000 28.98 16.58 0.00 2.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 87 2.925170 ACGGAGGCTGCCAGAAGT 60.925 61.111 22.65 12.03 0.00 3.01
239 242 0.035458 CTCACGGTTGCTTTCTCCCT 59.965 55.000 0.00 0.00 0.00 4.20
688 697 1.541670 GGCGTCACAGTGTTTCCCTAA 60.542 52.381 0.00 0.00 0.00 2.69
703 712 6.099269 TGTTTCCCTAAAGGTATTATCTCGCT 59.901 38.462 0.00 0.00 36.75 4.93
706 715 6.017192 TCCCTAAAGGTATTATCTCGCTGAT 58.983 40.000 0.00 0.00 36.69 2.90
756 765 3.072330 TGTGAAGACCATCAGTAAGCCAA 59.928 43.478 0.00 0.00 0.00 4.52
789 800 5.022282 ACACACTATTTTTGCCAAAGCTT 57.978 34.783 0.00 0.00 40.80 3.74
790 801 4.810491 ACACACTATTTTTGCCAAAGCTTG 59.190 37.500 0.00 0.00 40.80 4.01
836 847 1.682854 AGGACATTTGGTGTGTTGCAG 59.317 47.619 0.00 0.00 42.36 4.41
938 949 9.507280 GTAATTTTTCACAACATGATCATCGAT 57.493 29.630 4.86 0.00 37.11 3.59
1019 1033 7.127186 TGGACCCAGAGATCATTGTATTTCTTA 59.873 37.037 0.00 0.00 0.00 2.10
1088 1102 4.989797 GTGATGATCTCATTGAGCACTAGG 59.010 45.833 8.89 0.00 44.39 3.02
1171 1187 9.658799 TGTGGTTTGAACAATTCTTTTAATTCA 57.341 25.926 0.00 0.00 0.00 2.57
1252 1275 9.518906 TGTTGCATGATGCTAAAACATTATTAG 57.481 29.630 19.19 0.00 45.31 1.73
1512 1546 7.875327 TTTGCCTATTACCCTAAAACAGATC 57.125 36.000 0.00 0.00 0.00 2.75
1711 4324 0.180406 CCTCCACCCAACCCTAATCG 59.820 60.000 0.00 0.00 0.00 3.34
1907 4556 3.647771 GGACCTTCAAGGCCCGGT 61.648 66.667 2.20 0.00 39.63 5.28
2032 4681 0.320374 CCAGCACGGACAAGAACCTA 59.680 55.000 0.00 0.00 36.56 3.08
2122 4780 1.219393 GAAGGCGAAGGACTCCCTG 59.781 63.158 0.00 0.00 43.48 4.45
2277 4968 4.087892 CGGGGTCTGGCTGTGGAG 62.088 72.222 0.00 0.00 0.00 3.86
2380 5120 2.343426 CCGGGGCTCTTTCCTTTGC 61.343 63.158 0.00 0.00 0.00 3.68
2381 5121 1.303643 CGGGGCTCTTTCCTTTGCT 60.304 57.895 0.00 0.00 0.00 3.91
2382 5122 1.589716 CGGGGCTCTTTCCTTTGCTG 61.590 60.000 0.00 0.00 0.00 4.41
2383 5123 1.253593 GGGGCTCTTTCCTTTGCTGG 61.254 60.000 0.00 0.00 0.00 4.85
2384 5124 1.253593 GGGCTCTTTCCTTTGCTGGG 61.254 60.000 0.00 0.00 0.00 4.45
2385 5125 0.540597 GGCTCTTTCCTTTGCTGGGT 60.541 55.000 0.00 0.00 0.00 4.51
2386 5126 0.600057 GCTCTTTCCTTTGCTGGGTG 59.400 55.000 0.00 0.00 0.00 4.61
2387 5127 1.251251 CTCTTTCCTTTGCTGGGTGG 58.749 55.000 0.00 0.00 0.00 4.61
2388 5128 0.850100 TCTTTCCTTTGCTGGGTGGA 59.150 50.000 0.00 0.00 0.00 4.02
2389 5129 1.428912 TCTTTCCTTTGCTGGGTGGAT 59.571 47.619 0.00 0.00 0.00 3.41
2390 5130 1.821136 CTTTCCTTTGCTGGGTGGATC 59.179 52.381 0.00 0.00 0.00 3.36
2391 5131 1.075601 TTCCTTTGCTGGGTGGATCT 58.924 50.000 0.00 0.00 0.00 2.75
2392 5132 0.329261 TCCTTTGCTGGGTGGATCTG 59.671 55.000 0.00 0.00 0.00 2.90
2393 5133 1.318158 CCTTTGCTGGGTGGATCTGC 61.318 60.000 0.00 0.00 0.00 4.26
2394 5134 0.323178 CTTTGCTGGGTGGATCTGCT 60.323 55.000 0.00 0.00 0.00 4.24
2395 5135 0.322816 TTTGCTGGGTGGATCTGCTC 60.323 55.000 0.00 0.00 0.00 4.26
2396 5136 1.491274 TTGCTGGGTGGATCTGCTCA 61.491 55.000 0.00 0.00 0.00 4.26
2397 5137 1.300963 GCTGGGTGGATCTGCTCAA 59.699 57.895 0.00 0.00 0.00 3.02
2398 5138 0.747283 GCTGGGTGGATCTGCTCAAG 60.747 60.000 0.00 0.00 0.00 3.02
2399 5139 0.107312 CTGGGTGGATCTGCTCAAGG 60.107 60.000 0.00 0.00 0.00 3.61
2400 5140 1.225704 GGGTGGATCTGCTCAAGGG 59.774 63.158 0.00 0.00 0.00 3.95
2401 5141 1.452833 GGTGGATCTGCTCAAGGGC 60.453 63.158 0.00 0.00 0.00 5.19
2402 5142 1.300963 GTGGATCTGCTCAAGGGCA 59.699 57.895 0.00 0.00 40.15 5.36
2403 5143 0.106819 GTGGATCTGCTCAAGGGCAT 60.107 55.000 0.00 0.00 41.63 4.40
2404 5144 0.106868 TGGATCTGCTCAAGGGCATG 60.107 55.000 0.00 0.00 41.63 4.06
2405 5145 0.106819 GGATCTGCTCAAGGGCATGT 60.107 55.000 0.00 0.00 41.63 3.21
2406 5146 1.684248 GGATCTGCTCAAGGGCATGTT 60.684 52.381 0.00 0.00 41.63 2.71
2407 5147 1.404391 GATCTGCTCAAGGGCATGTTG 59.596 52.381 0.00 0.00 41.63 3.33
2408 5148 1.214589 CTGCTCAAGGGCATGTTGC 59.785 57.895 0.00 0.00 44.08 4.17
2409 5149 1.228644 TGCTCAAGGGCATGTTGCT 60.229 52.632 0.00 0.00 44.28 3.91
2425 5195 3.244665 TGTTGCTCTGTGATCTCAACCAT 60.245 43.478 0.00 0.00 36.97 3.55
2922 5821 3.702555 GCACCGACACACAGCGTC 61.703 66.667 0.00 0.00 0.00 5.19
3111 6260 0.523968 CGCATCCGGTTTGCTTCATG 60.524 55.000 23.20 10.06 37.96 3.07
3112 6261 0.527565 GCATCCGGTTTGCTTCATGT 59.472 50.000 20.22 0.00 37.14 3.21
3115 6416 3.181487 GCATCCGGTTTGCTTCATGTATT 60.181 43.478 20.22 0.00 37.14 1.89
3147 6448 7.814587 GCTAATACAAATCAAGATATTTGGCCC 59.185 37.037 0.00 0.00 46.51 5.80
3149 6450 4.623863 ACAAATCAAGATATTTGGCCCCT 58.376 39.130 0.00 0.00 46.51 4.79
3150 6451 5.032170 ACAAATCAAGATATTTGGCCCCTT 58.968 37.500 0.00 0.00 46.51 3.95
3151 6452 5.104817 ACAAATCAAGATATTTGGCCCCTTG 60.105 40.000 0.00 4.64 46.51 3.61
3152 6453 3.756082 TCAAGATATTTGGCCCCTTGT 57.244 42.857 0.00 0.00 36.53 3.16
3153 6454 4.871871 TCAAGATATTTGGCCCCTTGTA 57.128 40.909 0.00 0.00 36.53 2.41
3154 6455 5.402054 TCAAGATATTTGGCCCCTTGTAT 57.598 39.130 0.00 0.00 36.53 2.29
3155 6456 5.776358 TCAAGATATTTGGCCCCTTGTATT 58.224 37.500 0.00 0.00 36.53 1.89
3156 6457 5.598005 TCAAGATATTTGGCCCCTTGTATTG 59.402 40.000 0.00 0.00 36.53 1.90
3157 6458 5.402054 AGATATTTGGCCCCTTGTATTGA 57.598 39.130 0.00 0.00 0.00 2.57
3158 6459 5.969086 AGATATTTGGCCCCTTGTATTGAT 58.031 37.500 0.00 0.00 0.00 2.57
3159 6460 7.102518 AGATATTTGGCCCCTTGTATTGATA 57.897 36.000 0.00 0.00 0.00 2.15
3160 6461 7.712537 AGATATTTGGCCCCTTGTATTGATAT 58.287 34.615 0.00 0.00 0.00 1.63
3162 6463 9.474313 GATATTTGGCCCCTTGTATTGATATAA 57.526 33.333 0.00 0.00 0.00 0.98
3169 6473 7.451566 GGCCCCTTGTATTGATATAAGTTGAAT 59.548 37.037 0.00 0.00 31.83 2.57
3671 7599 7.826260 AAATCTTCACACATTTGAAAAACGT 57.174 28.000 0.00 0.00 35.07 3.99
3672 7600 8.918961 AAATCTTCACACATTTGAAAAACGTA 57.081 26.923 0.00 0.00 35.07 3.57
3673 7601 8.918961 AATCTTCACACATTTGAAAAACGTAA 57.081 26.923 0.00 0.00 35.07 3.18
3759 7687 0.966179 AAAACATGAGAAACCCCGGC 59.034 50.000 0.00 0.00 0.00 6.13
3760 7688 0.898326 AAACATGAGAAACCCCGGCC 60.898 55.000 0.00 0.00 0.00 6.13
3761 7689 1.789576 AACATGAGAAACCCCGGCCT 61.790 55.000 0.00 0.00 0.00 5.19
3762 7690 1.750399 CATGAGAAACCCCGGCCTG 60.750 63.158 0.00 0.00 0.00 4.85
3763 7691 1.923395 ATGAGAAACCCCGGCCTGA 60.923 57.895 0.00 0.00 0.00 3.86
3764 7692 1.497309 ATGAGAAACCCCGGCCTGAA 61.497 55.000 0.00 0.00 0.00 3.02
3765 7693 1.074248 GAGAAACCCCGGCCTGAAA 59.926 57.895 0.00 0.00 0.00 2.69
3766 7694 0.960861 GAGAAACCCCGGCCTGAAAG 60.961 60.000 0.00 0.00 0.00 2.62
3767 7695 1.228459 GAAACCCCGGCCTGAAAGT 60.228 57.895 0.00 0.00 0.00 2.66
3768 7696 0.826256 GAAACCCCGGCCTGAAAGTT 60.826 55.000 0.00 0.00 0.00 2.66
3769 7697 0.826256 AAACCCCGGCCTGAAAGTTC 60.826 55.000 0.00 0.00 0.00 3.01
3770 7698 2.002018 AACCCCGGCCTGAAAGTTCA 62.002 55.000 0.00 0.00 35.57 3.18
3771 7699 1.971695 CCCCGGCCTGAAAGTTCAC 60.972 63.158 0.00 0.00 32.90 3.18
3777 7705 2.099098 CGGCCTGAAAGTTCACAAAGTT 59.901 45.455 0.00 0.00 32.90 2.66
3778 7706 3.314080 CGGCCTGAAAGTTCACAAAGTTA 59.686 43.478 0.00 0.00 32.90 2.24
3779 7707 4.607955 GGCCTGAAAGTTCACAAAGTTAC 58.392 43.478 0.00 0.00 32.90 2.50
3782 7710 6.273071 GCCTGAAAGTTCACAAAGTTACATT 58.727 36.000 0.00 0.00 32.90 2.71
3784 7712 7.254084 GCCTGAAAGTTCACAAAGTTACATTTG 60.254 37.037 5.99 5.99 44.14 2.32
3798 7726 7.744087 AGTTACATTTGTCACATAAGAAGCA 57.256 32.000 0.00 0.00 0.00 3.91
3800 7728 8.629158 AGTTACATTTGTCACATAAGAAGCAAA 58.371 29.630 0.00 0.00 0.00 3.68
3801 7729 9.243637 GTTACATTTGTCACATAAGAAGCAAAA 57.756 29.630 0.00 0.00 31.10 2.44
3802 7730 9.809096 TTACATTTGTCACATAAGAAGCAAAAA 57.191 25.926 0.00 0.00 31.10 1.94
3803 7731 8.356533 ACATTTGTCACATAAGAAGCAAAAAG 57.643 30.769 0.00 0.00 31.10 2.27
3804 7732 8.196771 ACATTTGTCACATAAGAAGCAAAAAGA 58.803 29.630 0.00 0.00 31.10 2.52
3805 7733 9.033481 CATTTGTCACATAAGAAGCAAAAAGAA 57.967 29.630 0.00 0.00 31.10 2.52
3806 7734 8.994429 TTTGTCACATAAGAAGCAAAAAGAAA 57.006 26.923 0.00 0.00 0.00 2.52
3807 7735 8.633075 TTGTCACATAAGAAGCAAAAAGAAAG 57.367 30.769 0.00 0.00 0.00 2.62
3808 7736 6.697019 TGTCACATAAGAAGCAAAAAGAAAGC 59.303 34.615 0.00 0.00 0.00 3.51
3809 7737 6.697019 GTCACATAAGAAGCAAAAAGAAAGCA 59.303 34.615 0.00 0.00 0.00 3.91
3810 7738 7.222611 GTCACATAAGAAGCAAAAAGAAAGCAA 59.777 33.333 0.00 0.00 0.00 3.91
3811 7739 7.436080 TCACATAAGAAGCAAAAAGAAAGCAAG 59.564 33.333 0.00 0.00 0.00 4.01
3812 7740 7.223387 CACATAAGAAGCAAAAAGAAAGCAAGT 59.777 33.333 0.00 0.00 0.00 3.16
3813 7741 7.223387 ACATAAGAAGCAAAAAGAAAGCAAGTG 59.777 33.333 0.00 0.00 0.00 3.16
3815 7743 3.183793 AGCAAAAAGAAAGCAAGTGGG 57.816 42.857 0.00 0.00 0.00 4.61
3816 7744 1.599071 GCAAAAAGAAAGCAAGTGGGC 59.401 47.619 0.00 0.00 0.00 5.36
3818 7746 2.602257 AAAAGAAAGCAAGTGGGCAC 57.398 45.000 0.00 0.00 35.83 5.01
3820 7748 1.484038 AAGAAAGCAAGTGGGCACAA 58.516 45.000 0.00 0.00 35.83 3.33
3821 7749 0.746659 AGAAAGCAAGTGGGCACAAC 59.253 50.000 0.00 0.00 35.83 3.32
3822 7750 0.459489 GAAAGCAAGTGGGCACAACA 59.541 50.000 0.00 0.00 35.83 3.33
3824 7752 1.122227 AAGCAAGTGGGCACAACAAT 58.878 45.000 0.00 0.00 35.83 2.71
3825 7753 1.122227 AGCAAGTGGGCACAACAATT 58.878 45.000 0.00 0.00 35.83 2.32
3826 7754 2.315176 AGCAAGTGGGCACAACAATTA 58.685 42.857 0.00 0.00 35.83 1.40
3828 7756 2.799978 GCAAGTGGGCACAACAATTAAC 59.200 45.455 0.00 0.00 0.00 2.01
3829 7757 3.389221 CAAGTGGGCACAACAATTAACC 58.611 45.455 0.00 0.00 0.00 2.85
3830 7758 2.957474 AGTGGGCACAACAATTAACCT 58.043 42.857 0.00 0.00 0.00 3.50
3831 7759 2.627699 AGTGGGCACAACAATTAACCTG 59.372 45.455 0.00 0.00 0.00 4.00
3832 7760 2.364002 GTGGGCACAACAATTAACCTGT 59.636 45.455 0.00 0.00 0.00 4.00
3833 7761 2.625790 TGGGCACAACAATTAACCTGTC 59.374 45.455 0.00 0.00 0.00 3.51
3834 7762 2.029380 GGGCACAACAATTAACCTGTCC 60.029 50.000 0.00 0.00 0.00 4.02
3835 7763 2.029380 GGCACAACAATTAACCTGTCCC 60.029 50.000 0.00 0.00 0.00 4.46
3836 7764 2.625790 GCACAACAATTAACCTGTCCCA 59.374 45.455 0.00 0.00 0.00 4.37
3837 7765 3.305335 GCACAACAATTAACCTGTCCCAG 60.305 47.826 0.00 0.00 0.00 4.45
3838 7766 3.888930 CACAACAATTAACCTGTCCCAGT 59.111 43.478 0.00 0.00 0.00 4.00
3839 7767 4.340950 CACAACAATTAACCTGTCCCAGTT 59.659 41.667 0.00 0.00 0.00 3.16
3840 7768 4.959839 ACAACAATTAACCTGTCCCAGTTT 59.040 37.500 0.00 0.00 0.00 2.66
3841 7769 5.163457 ACAACAATTAACCTGTCCCAGTTTG 60.163 40.000 0.00 0.00 0.00 2.93
3842 7770 4.542697 ACAATTAACCTGTCCCAGTTTGT 58.457 39.130 0.00 0.00 0.00 2.83
3843 7771 4.959839 ACAATTAACCTGTCCCAGTTTGTT 59.040 37.500 0.00 0.00 0.00 2.83
3844 7772 6.130569 ACAATTAACCTGTCCCAGTTTGTTA 58.869 36.000 0.00 0.00 0.00 2.41
3845 7773 6.040054 ACAATTAACCTGTCCCAGTTTGTTAC 59.960 38.462 0.00 0.00 0.00 2.50
3846 7774 3.945640 AACCTGTCCCAGTTTGTTACT 57.054 42.857 0.00 0.00 37.68 2.24
3849 7777 5.376756 ACCTGTCCCAGTTTGTTACTAAA 57.623 39.130 0.00 0.00 34.56 1.85
3850 7778 5.757988 ACCTGTCCCAGTTTGTTACTAAAA 58.242 37.500 0.00 0.00 34.56 1.52
3851 7779 5.591472 ACCTGTCCCAGTTTGTTACTAAAAC 59.409 40.000 0.00 0.00 37.71 2.43
3852 7780 5.826208 CCTGTCCCAGTTTGTTACTAAAACT 59.174 40.000 0.00 0.00 46.25 2.66
3853 7781 6.993902 CCTGTCCCAGTTTGTTACTAAAACTA 59.006 38.462 1.54 0.00 44.11 2.24
3854 7782 7.172703 CCTGTCCCAGTTTGTTACTAAAACTAG 59.827 40.741 1.54 0.00 44.11 2.57
3855 7783 7.794041 TGTCCCAGTTTGTTACTAAAACTAGA 58.206 34.615 0.00 0.48 44.11 2.43
3859 7787 9.768662 CCCAGTTTGTTACTAAAACTAGAAGTA 57.231 33.333 0.00 0.00 44.11 2.24
3870 7798 8.155510 ACTAAAACTAGAAGTAAACCTTGAGGG 58.844 37.037 0.00 0.00 40.27 4.30
3885 7813 6.364945 CCTTGAGGGTTAAATTCGAATCTC 57.635 41.667 11.83 12.46 0.00 2.75
3887 7815 3.869246 TGAGGGTTAAATTCGAATCTCGC 59.131 43.478 11.83 10.13 40.21 5.03
3888 7816 3.869065 AGGGTTAAATTCGAATCTCGCA 58.131 40.909 11.83 0.00 40.21 5.10
3889 7817 4.451900 AGGGTTAAATTCGAATCTCGCAT 58.548 39.130 11.83 0.00 40.21 4.73
3890 7818 4.273480 AGGGTTAAATTCGAATCTCGCATG 59.727 41.667 11.83 0.00 40.21 4.06
3891 7819 4.527564 GGTTAAATTCGAATCTCGCATGG 58.472 43.478 11.83 0.00 40.21 3.66
3905 7833 2.276472 GCATGGCGCAGTTTATTTGA 57.724 45.000 10.83 0.00 41.79 2.69
3906 7834 2.605030 GCATGGCGCAGTTTATTTGAA 58.395 42.857 10.83 0.00 41.79 2.69
3907 7835 2.599973 GCATGGCGCAGTTTATTTGAAG 59.400 45.455 10.83 0.00 41.79 3.02
3908 7836 3.673052 GCATGGCGCAGTTTATTTGAAGA 60.673 43.478 10.83 0.00 41.79 2.87
3909 7837 4.675510 CATGGCGCAGTTTATTTGAAGAT 58.324 39.130 10.83 0.00 0.00 2.40
3910 7838 4.782019 TGGCGCAGTTTATTTGAAGATT 57.218 36.364 10.83 0.00 0.00 2.40
3911 7839 5.888691 TGGCGCAGTTTATTTGAAGATTA 57.111 34.783 10.83 0.00 0.00 1.75
3912 7840 6.260870 TGGCGCAGTTTATTTGAAGATTAA 57.739 33.333 10.83 0.00 0.00 1.40
3913 7841 6.682746 TGGCGCAGTTTATTTGAAGATTAAA 58.317 32.000 10.83 0.00 0.00 1.52
3914 7842 7.148641 TGGCGCAGTTTATTTGAAGATTAAAA 58.851 30.769 10.83 0.00 0.00 1.52
3915 7843 7.653713 TGGCGCAGTTTATTTGAAGATTAAAAA 59.346 29.630 10.83 0.00 0.00 1.94
3916 7844 8.162245 GGCGCAGTTTATTTGAAGATTAAAAAG 58.838 33.333 10.83 0.00 0.00 2.27
4065 7993 9.760926 TCATAAGCAATCTCTATCCTAGTACAT 57.239 33.333 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
239 242 7.069455 CAGAAAGAAAGGAAAGGGGAAAAAGTA 59.931 37.037 0.00 0.00 0.00 2.24
688 697 6.665680 AGATACCATCAGCGAGATAATACCTT 59.334 38.462 0.00 0.00 34.43 3.50
703 712 4.283467 CCCACGAAAGGATAGATACCATCA 59.717 45.833 0.00 0.00 0.00 3.07
706 715 2.367567 GCCCACGAAAGGATAGATACCA 59.632 50.000 0.00 0.00 0.00 3.25
756 765 7.709182 GGCAAAAATAGTGTGTTTCCTAGTTTT 59.291 33.333 0.00 0.00 40.21 2.43
789 800 2.369860 TCTCCTTTCAGCAAGCTTCTCA 59.630 45.455 0.00 0.00 0.00 3.27
790 801 3.051081 TCTCCTTTCAGCAAGCTTCTC 57.949 47.619 0.00 0.00 0.00 2.87
893 904 6.808008 ATTACACATGCAGTCATAATAGCC 57.192 37.500 0.00 0.00 0.00 3.93
955 966 6.423001 CACGGCTACCAATATAGTAAAACTCC 59.577 42.308 0.00 0.00 0.00 3.85
993 1004 5.429762 AGAAATACAATGATCTCTGGGTCCA 59.570 40.000 0.00 0.00 0.00 4.02
1019 1033 6.839454 TGTCCTAGATCTTTCTATAGGTCGT 58.161 40.000 0.00 0.00 33.98 4.34
1088 1102 5.070685 AGTTTATCTCCCAAACAGTTGTCC 58.929 41.667 0.00 0.00 38.16 4.02
1139 1153 9.612066 AAAAGAATTGTTCAAACCACACATAAT 57.388 25.926 0.00 0.00 0.00 1.28
1386 1415 9.636879 CGTGAGATCTTATATTGAGATTCATGT 57.363 33.333 0.00 0.00 34.13 3.21
1400 1434 9.263538 GTCGATACTATATCCGTGAGATCTTAT 57.736 37.037 0.00 0.00 36.33 1.73
1498 1532 1.628846 ACCGCAGATCTGTTTTAGGGT 59.371 47.619 23.38 16.65 0.00 4.34
1512 1546 3.982372 ATGTCGTGCCGTACCGCAG 62.982 63.158 9.23 4.58 40.05 5.18
1907 4556 2.433491 CGGGTTGCCGACGATTGA 60.433 61.111 0.00 0.00 34.88 2.57
2114 4772 1.677637 GGGATCACGGACAGGGAGTC 61.678 65.000 0.00 0.00 46.83 3.36
2122 4780 2.758737 AGACGGGGGATCACGGAC 60.759 66.667 8.26 3.08 0.00 4.79
2277 4968 0.804989 CCATTCTTTGGCAGACGACC 59.195 55.000 0.00 0.00 39.09 4.79
2380 5120 0.107312 CCTTGAGCAGATCCACCCAG 60.107 60.000 0.00 0.00 0.00 4.45
2381 5121 1.565390 CCCTTGAGCAGATCCACCCA 61.565 60.000 0.00 0.00 0.00 4.51
2382 5122 1.225704 CCCTTGAGCAGATCCACCC 59.774 63.158 0.00 0.00 0.00 4.61
2383 5123 1.452833 GCCCTTGAGCAGATCCACC 60.453 63.158 0.00 0.00 0.00 4.61
2384 5124 1.300963 TGCCCTTGAGCAGATCCAC 59.699 57.895 0.00 0.00 38.00 4.02
2385 5125 3.824815 TGCCCTTGAGCAGATCCA 58.175 55.556 0.00 0.00 38.00 3.41
2391 5131 1.228644 AGCAACATGCCCTTGAGCA 60.229 52.632 0.00 0.00 46.52 4.26
2392 5132 0.964358 AGAGCAACATGCCCTTGAGC 60.964 55.000 0.00 0.00 46.52 4.26
2393 5133 0.809385 CAGAGCAACATGCCCTTGAG 59.191 55.000 0.00 0.00 46.52 3.02
2394 5134 0.111061 ACAGAGCAACATGCCCTTGA 59.889 50.000 0.00 0.00 46.52 3.02
2395 5135 0.242825 CACAGAGCAACATGCCCTTG 59.757 55.000 0.00 0.00 46.52 3.61
2396 5136 0.111061 TCACAGAGCAACATGCCCTT 59.889 50.000 0.00 0.00 46.52 3.95
2397 5137 0.330604 ATCACAGAGCAACATGCCCT 59.669 50.000 0.00 0.00 46.52 5.19
2398 5138 0.737219 GATCACAGAGCAACATGCCC 59.263 55.000 0.00 0.00 46.52 5.36
2399 5139 1.669779 GAGATCACAGAGCAACATGCC 59.330 52.381 0.00 0.00 46.52 4.40
2400 5140 2.353323 TGAGATCACAGAGCAACATGC 58.647 47.619 0.00 0.00 45.46 4.06
2401 5141 3.126514 GGTTGAGATCACAGAGCAACATG 59.873 47.826 0.00 0.00 40.28 3.21
2402 5142 3.244665 TGGTTGAGATCACAGAGCAACAT 60.245 43.478 0.00 0.00 40.28 2.71
2403 5143 2.104622 TGGTTGAGATCACAGAGCAACA 59.895 45.455 0.00 0.00 40.28 3.33
2404 5144 2.771089 TGGTTGAGATCACAGAGCAAC 58.229 47.619 0.00 0.00 38.40 4.17
2405 5145 3.008266 TCATGGTTGAGATCACAGAGCAA 59.992 43.478 0.00 0.00 0.00 3.91
2406 5146 2.568509 TCATGGTTGAGATCACAGAGCA 59.431 45.455 0.00 2.94 0.00 4.26
2407 5147 2.935201 GTCATGGTTGAGATCACAGAGC 59.065 50.000 0.00 0.00 30.85 4.09
2408 5148 4.182339 CAGTCATGGTTGAGATCACAGAG 58.818 47.826 0.00 0.00 30.85 3.35
2409 5149 3.618263 GCAGTCATGGTTGAGATCACAGA 60.618 47.826 0.00 0.00 30.85 3.41
2425 5195 2.159393 GCTGAACTTGTTGTTGCAGTCA 60.159 45.455 0.00 0.00 39.30 3.41
2674 5561 1.059913 AACCTGCAGACTGGTAGCTT 58.940 50.000 17.39 0.00 46.56 3.74
2922 5821 1.827344 TGACAGGGTGAGATGCTGTAG 59.173 52.381 0.00 0.00 0.00 2.74
3064 6206 5.090083 GCAAGCGTTGGAATTTTAATCGTA 58.910 37.500 1.01 0.00 0.00 3.43
3128 6429 5.104817 ACAAGGGGCCAAATATCTTGATTTG 60.105 40.000 20.28 2.55 43.51 2.32
3169 6473 8.237811 TGAGCATCAATATCAGACTTGTACTA 57.762 34.615 0.00 0.00 45.97 1.82
3223 6945 4.104261 GGGGGCAGAGTAATTTGGTAGTAT 59.896 45.833 0.00 0.00 0.00 2.12
3402 7298 5.470098 GTGTTCAGCTCTAGTTTGAATGGAA 59.530 40.000 8.69 0.00 33.82 3.53
3645 7573 9.360093 ACGTTTTTCAAATGTGTGAAGATTTTA 57.640 25.926 0.00 0.00 38.69 1.52
3646 7574 8.250538 ACGTTTTTCAAATGTGTGAAGATTTT 57.749 26.923 0.00 0.00 38.69 1.82
3647 7575 7.826260 ACGTTTTTCAAATGTGTGAAGATTT 57.174 28.000 0.00 0.00 38.69 2.17
3648 7576 8.918961 TTACGTTTTTCAAATGTGTGAAGATT 57.081 26.923 0.00 0.00 38.69 2.40
3649 7577 8.918961 TTTACGTTTTTCAAATGTGTGAAGAT 57.081 26.923 0.00 0.00 38.69 2.40
3650 7578 8.744008 TTTTACGTTTTTCAAATGTGTGAAGA 57.256 26.923 0.00 0.00 38.69 2.87
3741 7669 0.898326 GGCCGGGGTTTCTCATGTTT 60.898 55.000 2.18 0.00 0.00 2.83
3742 7670 1.304134 GGCCGGGGTTTCTCATGTT 60.304 57.895 2.18 0.00 0.00 2.71
3743 7671 2.231380 AGGCCGGGGTTTCTCATGT 61.231 57.895 2.18 0.00 0.00 3.21
3744 7672 1.750399 CAGGCCGGGGTTTCTCATG 60.750 63.158 2.18 0.00 0.00 3.07
3746 7674 1.710996 TTTCAGGCCGGGGTTTCTCA 61.711 55.000 2.18 0.00 0.00 3.27
3747 7675 0.960861 CTTTCAGGCCGGGGTTTCTC 60.961 60.000 2.18 0.00 0.00 2.87
3748 7676 1.074951 CTTTCAGGCCGGGGTTTCT 59.925 57.895 2.18 0.00 0.00 2.52
3749 7677 0.826256 AACTTTCAGGCCGGGGTTTC 60.826 55.000 2.18 0.00 0.00 2.78
3750 7678 0.826256 GAACTTTCAGGCCGGGGTTT 60.826 55.000 2.18 0.00 0.00 3.27
3752 7680 2.434774 GAACTTTCAGGCCGGGGT 59.565 61.111 2.18 0.00 0.00 4.95
3753 7681 1.971695 GTGAACTTTCAGGCCGGGG 60.972 63.158 2.18 0.00 37.98 5.73
3755 7683 1.001378 CTTTGTGAACTTTCAGGCCGG 60.001 52.381 0.00 0.00 37.98 6.13
3756 7684 1.676006 ACTTTGTGAACTTTCAGGCCG 59.324 47.619 0.00 0.00 37.98 6.13
3757 7685 3.801114 AACTTTGTGAACTTTCAGGCC 57.199 42.857 0.00 0.00 37.98 5.19
3758 7686 5.243426 TGTAACTTTGTGAACTTTCAGGC 57.757 39.130 0.00 0.00 37.98 4.85
3759 7687 7.759433 ACAAATGTAACTTTGTGAACTTTCAGG 59.241 33.333 1.68 0.00 45.21 3.86
3760 7688 8.687824 ACAAATGTAACTTTGTGAACTTTCAG 57.312 30.769 1.68 0.00 45.21 3.02
3761 7689 8.300286 TGACAAATGTAACTTTGTGAACTTTCA 58.700 29.630 6.90 0.00 46.50 2.69
3762 7690 8.583765 GTGACAAATGTAACTTTGTGAACTTTC 58.416 33.333 6.90 0.00 46.50 2.62
3763 7691 8.085296 TGTGACAAATGTAACTTTGTGAACTTT 58.915 29.630 6.90 0.00 46.50 2.66
3764 7692 7.598278 TGTGACAAATGTAACTTTGTGAACTT 58.402 30.769 6.90 0.00 46.50 2.66
3765 7693 7.151999 TGTGACAAATGTAACTTTGTGAACT 57.848 32.000 6.90 0.00 46.50 3.01
3766 7694 7.985634 ATGTGACAAATGTAACTTTGTGAAC 57.014 32.000 6.90 6.18 46.50 3.18
3767 7695 9.729023 CTTATGTGACAAATGTAACTTTGTGAA 57.271 29.630 6.90 0.00 46.50 3.18
3768 7696 9.114952 TCTTATGTGACAAATGTAACTTTGTGA 57.885 29.630 6.90 0.00 46.50 3.58
3769 7697 9.729023 TTCTTATGTGACAAATGTAACTTTGTG 57.271 29.630 6.90 0.00 46.50 3.33
3771 7699 8.905702 GCTTCTTATGTGACAAATGTAACTTTG 58.094 33.333 2.85 0.00 41.02 2.77
3777 7705 9.462174 CTTTTTGCTTCTTATGTGACAAATGTA 57.538 29.630 0.00 0.00 0.00 2.29
3778 7706 8.196771 TCTTTTTGCTTCTTATGTGACAAATGT 58.803 29.630 0.00 0.00 0.00 2.71
3779 7707 8.578308 TCTTTTTGCTTCTTATGTGACAAATG 57.422 30.769 0.00 0.00 0.00 2.32
3782 7710 7.222611 GCTTTCTTTTTGCTTCTTATGTGACAA 59.777 33.333 0.00 0.00 0.00 3.18
3784 7712 6.697019 TGCTTTCTTTTTGCTTCTTATGTGAC 59.303 34.615 0.00 0.00 0.00 3.67
3786 7714 7.223387 ACTTGCTTTCTTTTTGCTTCTTATGTG 59.777 33.333 0.00 0.00 0.00 3.21
3790 7718 6.042143 CCACTTGCTTTCTTTTTGCTTCTTA 58.958 36.000 0.00 0.00 0.00 2.10
3792 7720 4.436332 CCACTTGCTTTCTTTTTGCTTCT 58.564 39.130 0.00 0.00 0.00 2.85
3793 7721 3.557185 CCCACTTGCTTTCTTTTTGCTTC 59.443 43.478 0.00 0.00 0.00 3.86
3794 7722 3.534554 CCCACTTGCTTTCTTTTTGCTT 58.465 40.909 0.00 0.00 0.00 3.91
3795 7723 2.742856 GCCCACTTGCTTTCTTTTTGCT 60.743 45.455 0.00 0.00 0.00 3.91
3796 7724 1.599071 GCCCACTTGCTTTCTTTTTGC 59.401 47.619 0.00 0.00 0.00 3.68
3798 7726 2.235898 TGTGCCCACTTGCTTTCTTTTT 59.764 40.909 0.00 0.00 0.00 1.94
3800 7728 1.484038 TGTGCCCACTTGCTTTCTTT 58.516 45.000 0.00 0.00 0.00 2.52
3801 7729 1.136891 GTTGTGCCCACTTGCTTTCTT 59.863 47.619 0.00 0.00 0.00 2.52
3802 7730 0.746659 GTTGTGCCCACTTGCTTTCT 59.253 50.000 0.00 0.00 0.00 2.52
3803 7731 0.459489 TGTTGTGCCCACTTGCTTTC 59.541 50.000 0.00 0.00 0.00 2.62
3804 7732 0.901124 TTGTTGTGCCCACTTGCTTT 59.099 45.000 0.00 0.00 0.00 3.51
3805 7733 1.122227 ATTGTTGTGCCCACTTGCTT 58.878 45.000 0.00 0.00 0.00 3.91
3806 7734 1.122227 AATTGTTGTGCCCACTTGCT 58.878 45.000 0.00 0.00 0.00 3.91
3807 7735 2.799978 GTTAATTGTTGTGCCCACTTGC 59.200 45.455 0.00 0.00 0.00 4.01
3808 7736 3.069443 AGGTTAATTGTTGTGCCCACTTG 59.931 43.478 0.00 0.00 0.00 3.16
3809 7737 3.069443 CAGGTTAATTGTTGTGCCCACTT 59.931 43.478 0.00 0.00 0.00 3.16
3810 7738 2.627699 CAGGTTAATTGTTGTGCCCACT 59.372 45.455 0.00 0.00 0.00 4.00
3811 7739 2.364002 ACAGGTTAATTGTTGTGCCCAC 59.636 45.455 0.00 0.00 0.00 4.61
3812 7740 2.625790 GACAGGTTAATTGTTGTGCCCA 59.374 45.455 0.00 0.00 0.00 5.36
3813 7741 2.029380 GGACAGGTTAATTGTTGTGCCC 60.029 50.000 0.00 0.00 0.00 5.36
3815 7743 2.625790 TGGGACAGGTTAATTGTTGTGC 59.374 45.455 0.00 0.00 0.00 4.57
3830 7758 7.794041 TCTAGTTTTAGTAACAAACTGGGACA 58.206 34.615 9.35 0.00 43.02 4.02
3831 7759 8.667076 TTCTAGTTTTAGTAACAAACTGGGAC 57.333 34.615 9.35 0.00 43.02 4.46
3832 7760 8.488668 ACTTCTAGTTTTAGTAACAAACTGGGA 58.511 33.333 9.35 2.26 43.02 4.37
3833 7761 8.672823 ACTTCTAGTTTTAGTAACAAACTGGG 57.327 34.615 9.35 4.21 43.02 4.45
3844 7772 8.155510 CCCTCAAGGTTTACTTCTAGTTTTAGT 58.844 37.037 0.00 0.00 37.29 2.24
3845 7773 8.549338 CCCTCAAGGTTTACTTCTAGTTTTAG 57.451 38.462 0.00 0.00 37.29 1.85
3862 7790 5.006746 CGAGATTCGAATTTAACCCTCAAGG 59.993 44.000 12.81 0.00 43.74 3.61
3863 7791 5.502544 GCGAGATTCGAATTTAACCCTCAAG 60.503 44.000 12.81 3.10 43.74 3.02
3864 7792 4.331717 GCGAGATTCGAATTTAACCCTCAA 59.668 41.667 12.81 0.00 43.74 3.02
3866 7794 3.869246 TGCGAGATTCGAATTTAACCCTC 59.131 43.478 12.81 11.50 43.74 4.30
3867 7795 3.869065 TGCGAGATTCGAATTTAACCCT 58.131 40.909 12.81 3.17 43.74 4.34
3870 7798 3.968724 GCCATGCGAGATTCGAATTTAAC 59.031 43.478 12.81 2.99 43.74 2.01
3871 7799 4.209452 GCCATGCGAGATTCGAATTTAA 57.791 40.909 12.81 0.00 43.74 1.52
3872 7800 3.878086 GCCATGCGAGATTCGAATTTA 57.122 42.857 12.81 0.00 43.74 1.40
3873 7801 2.763249 GCCATGCGAGATTCGAATTT 57.237 45.000 12.81 6.48 43.74 1.82
3887 7815 4.095410 TCTTCAAATAAACTGCGCCATG 57.905 40.909 4.18 0.00 0.00 3.66
3888 7816 4.989279 ATCTTCAAATAAACTGCGCCAT 57.011 36.364 4.18 0.00 0.00 4.40
3889 7817 4.782019 AATCTTCAAATAAACTGCGCCA 57.218 36.364 4.18 0.00 0.00 5.69
3890 7818 7.575332 TTTTAATCTTCAAATAAACTGCGCC 57.425 32.000 4.18 0.00 0.00 6.53
3891 7819 8.911662 TCTTTTTAATCTTCAAATAAACTGCGC 58.088 29.630 0.00 0.00 0.00 6.09
3965 7893 2.047274 CATCCGCCGGTTGAGTGT 60.047 61.111 8.52 0.00 0.00 3.55
4006 7934 0.102844 AATCAAATCCGGCGCCAATG 59.897 50.000 28.98 16.58 0.00 2.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.