AutoCloner

Multiple sequence alignment - TraesCS2B01G025100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2B01G025100	chr2B	100.000	3482	0	0	1	3482	11519317	11515836	0.000000e+00	6431.0
1	TraesCS2B01G025100	chr2B	91.830	3121	190	31	369	3476	12421690	12424758	0.000000e+00	4290.0
2	TraesCS2B01G025100	chr2B	85.069	1748	243	17	815	2554	768807185	768805448	0.000000e+00	1766.0
3	TraesCS2B01G025100	chr2B	83.179	1938	285	23	628	2554	138993653	138991746	0.000000e+00	1735.0
4	TraesCS2B01G025100	chr2B	84.579	1686	247	12	815	2497	768929605	768927930	0.000000e+00	1661.0
5	TraesCS2B01G025100	chr2B	82.588	1499	232	19	1031	2518	13058749	13057269	0.000000e+00	1295.0
6	TraesCS2B01G025100	chr2B	97.861	374	6	2	1	373	12421291	12421663	0.000000e+00	645.0
7	TraesCS2B01G025100	chr2B	79.158	475	89	9	2033	2505	11420029	11420495	1.560000e-83	320.0
8	TraesCS2B01G025100	chr2B	75.776	322	47	18	649	956	13347811	13347507	2.180000e-27	134.0
9	TraesCS2B01G025100	chr2D	90.107	2901	256	20	576	3461	9604325	9607209	0.000000e+00	3738.0
10	TraesCS2B01G025100	chr2D	85.286	1869	253	15	623	2484	19586638	19588491	0.000000e+00	1908.0
11	TraesCS2B01G025100	chr2D	83.241	1993	292	31	641	2616	8695302	8697269	0.000000e+00	1792.0
12	TraesCS2B01G025100	chr2D	83.377	1925	274	28	640	2554	85929932	85928044	0.000000e+00	1740.0
13	TraesCS2B01G025100	chr2D	81.532	222	39	2	1	221	9384444	9384664	7.680000e-42	182.0
14	TraesCS2B01G025100	chr2A	90.490	2471	175	24	370	2824	8706777	8709203	0.000000e+00	3206.0
15	TraesCS2B01G025100	chr2A	81.677	644	106	7	2840	3482	8716212	8716844	3.080000e-145	525.0
16	TraesCS2B01G025100	chr2A	83.204	387	43	11	1	370	8706273	8706654	5.570000e-88	335.0
17	TraesCS2B01G025100	chr1B	95.000	40	1	1	238	276	39519036	39519075	1.040000e-05	62.1
18	TraesCS2B01G025100	chr7D	94.737	38	2	0	239	276	422955214	422955177	3.750000e-05	60.2
19	TraesCS2B01G025100	chr3A	97.143	35	1	0	242	276	41365287	41365253	3.750000e-05	60.2
20	TraesCS2B01G025100	chr5D	94.595	37	2	0	242	278	285843729	285843693	1.350000e-04	58.4
21	TraesCS2B01G025100	chr3B	94.444	36	2	0	239	274	633173143	633173178	4.860000e-04	56.5
22	TraesCS2B01G025100	chr4B	94.286	35	2	0	242	276	186238712	186238678	2.000000e-03	54.7
23	TraesCS2B01G025100	chr6D	100.000	28	0	0	239	266	78352732	78352759	6.000000e-03	52.8
24	TraesCS2B01G025100	chr4D	91.892	37	3	0	239	275	127555288	127555252	6.000000e-03	52.8

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2B01G025100	chr2B	11515836	11519317	3481	True	6431.0	6431	100.0000	1	3482	1	chr2B.!!$R1	3481
1	TraesCS2B01G025100	chr2B	12421291	12424758	3467	False	2467.5	4290	94.8455	1	3476	2	chr2B.!!$F2	3475
2	TraesCS2B01G025100	chr2B	768805448	768807185	1737	True	1766.0	1766	85.0690	815	2554	1	chr2B.!!$R5	1739
3	TraesCS2B01G025100	chr2B	138991746	138993653	1907	True	1735.0	1735	83.1790	628	2554	1	chr2B.!!$R4	1926
4	TraesCS2B01G025100	chr2B	768927930	768929605	1675	True	1661.0	1661	84.5790	815	2497	1	chr2B.!!$R6	1682
5	TraesCS2B01G025100	chr2B	13057269	13058749	1480	True	1295.0	1295	82.5880	1031	2518	1	chr2B.!!$R2	1487
6	TraesCS2B01G025100	chr2D	9604325	9607209	2884	False	3738.0	3738	90.1070	576	3461	1	chr2D.!!$F3	2885
7	TraesCS2B01G025100	chr2D	19586638	19588491	1853	False	1908.0	1908	85.2860	623	2484	1	chr2D.!!$F4	1861
8	TraesCS2B01G025100	chr2D	8695302	8697269	1967	False	1792.0	1792	83.2410	641	2616	1	chr2D.!!$F1	1975
9	TraesCS2B01G025100	chr2D	85928044	85929932	1888	True	1740.0	1740	83.3770	640	2554	1	chr2D.!!$R1	1914
10	TraesCS2B01G025100	chr2A	8706273	8709203	2930	False	1770.5	3206	86.8470	1	2824	2	chr2A.!!$F2	2823
11	TraesCS2B01G025100	chr2A	8716212	8716844	632	False	525.0	525	81.6770	2840	3482	1	chr2A.!!$F1	642

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
362	377	2.223876	TGTCCCGACTGTCAAGTTACAC	60.224	50.0	8.73	0.0	36.52	2.90	F
1155	1320	2.573941	TGAGAGTCAGCATCGTCATG	57.426	50.0	0.00	0.0	0.00	3.07	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1746	1914	0.322456	TCCCAAACATGCTCCTTCCG	60.322	55.0	0.00	0.0	0.00	4.30	R
2886	3090	0.530870	GGAAGGTGCTCGCCTATGTC	60.531	60.0	1.97	0.0	38.03	3.06	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
185	194	8.700973	GGAGAGAGAAAGTGGAAGTATCTAAAT	58.299	37.037	0.00	0.00	0.00	1.40
300	311	4.106197	CACTATACTTGACAACTCGAGGC	58.894	47.826	18.41	3.69	32.55	4.70
362	377	2.223876	TGTCCCGACTGTCAAGTTACAC	60.224	50.000	8.73	0.00	36.52	2.90
446	588	4.202223	GGCGTTCTTATGGTGGAGAGATTA	60.202	45.833	0.00	0.00	0.00	1.75
485	627	9.738832	GAGAACTAATTAAGCTAAGAAGTCGAT	57.261	33.333	0.00	0.00	0.00	3.59
487	629	8.874744	AACTAATTAAGCTAAGAAGTCGATCC	57.125	34.615	0.00	0.00	0.00	3.36
526	676	7.867445	CTTGTTGTTCAAGTGTTGTAAACTT	57.133	32.000	0.00	0.00	44.84	2.66
1155	1320	2.573941	TGAGAGTCAGCATCGTCATG	57.426	50.000	0.00	0.00	0.00	3.07
1368	1534	5.494632	TCAAGCGTTCTCGAACATATAGA	57.505	39.130	10.10	0.00	41.20	1.98
1371	1537	5.752892	AGCGTTCTCGAACATATAGAGAA	57.247	39.130	10.10	3.35	45.40	2.87
1497	1663	2.852748	CGCATGTCTCGTAGGCTATAC	58.147	52.381	0.00	0.00	0.00	1.47
1746	1914	3.119101	ACCTCATGACGATACTTGACCAC	60.119	47.826	0.00	0.00	0.00	4.16
1812	1980	4.436332	CTTCTGATGTGGATGACGATGAA	58.564	43.478	0.00	0.00	0.00	2.57
1975	2143	4.206375	TCTTTTCAAGACACTGGCATTCA	58.794	39.130	0.00	0.00	31.20	2.57
1996	2164	4.971282	TCAGGAACATAGATCCCACAGAAT	59.029	41.667	0.00	0.00	37.71	2.40
2011	2179	6.670464	TCCCACAGAATATCCACAACTAGTAA	59.330	38.462	0.00	0.00	0.00	2.24
2111	2279	3.165875	TGAGAAGGAACCTCGATGTTCT	58.834	45.455	26.01	12.66	43.31	3.01
2319	2496	2.239907	GACATTGGGGGAACTTCTAGCT	59.760	50.000	0.00	0.00	0.00	3.32
2561	2762	8.985315	AAACAGATGTGTTCATGTATATGGAT	57.015	30.769	8.90	0.00	46.68	3.41
2602	2803	8.229253	TGTATTACAGGTCTCATGTAACGTAT	57.771	34.615	8.70	0.00	43.76	3.06
2641	2842	7.665559	TGTTTTACTTGATCAAACTATCCAGCT	59.334	33.333	9.88	0.00	32.58	4.24
2647	2848	5.993055	TGATCAAACTATCCAGCTCATGAA	58.007	37.500	0.00	0.00	0.00	2.57
2660	2861	5.350914	CCAGCTCATGAACTTCTAGTCTTTG	59.649	44.000	0.00	0.00	0.00	2.77
2696	2897	8.507249	GTCTCAGTAATGTTGCTTTACAAGAAT	58.493	33.333	7.38	0.00	39.50	2.40
2725	2926	6.442513	ACATGCATCATCATCATCATCATC	57.557	37.500	0.00	0.00	0.00	2.92
2732	2933	7.521261	GCATCATCATCATCATCATCATCATCC	60.521	40.741	0.00	0.00	0.00	3.51
2733	2934	6.957631	TCATCATCATCATCATCATCATCCA	58.042	36.000	0.00	0.00	0.00	3.41
2767	2971	8.786826	AAAGTTGATACCGATGAAGAAATGTA	57.213	30.769	0.00	0.00	0.00	2.29
2782	2986	8.412456	TGAAGAAATGTAATTGATGTGTTGTGT	58.588	29.630	0.00	0.00	36.10	3.72
2812	3016	6.206634	GTGTGGATGTGGATTCTACAAAGAAA	59.793	38.462	6.96	0.00	44.75	2.52
2843	3047	8.763049	TCGGATCAGATTATAGTTGCAATTAG	57.237	34.615	0.59	0.00	0.00	1.73
2880	3084	3.305177	GAAACCGACTAGGCGCCCA	62.305	63.158	26.15	9.26	46.52	5.36
2881	3085	2.791501	GAAACCGACTAGGCGCCCAA	62.792	60.000	26.15	11.42	46.52	4.12
2884	3088	1.451387	CCGACTAGGCGCCCAAATT	60.451	57.895	26.15	6.59	0.00	1.82
2886	3090	1.762222	CGACTAGGCGCCCAAATTCG	61.762	60.000	26.15	19.66	0.00	3.34
2895	3099	0.307760	GCCCAAATTCGACATAGGCG	59.692	55.000	0.00	0.00	0.00	5.52
2899	3103	1.933181	CAAATTCGACATAGGCGAGCA	59.067	47.619	0.00	0.00	39.14	4.26
2973	3177	7.701809	TTCAATTTCAAATTACCAACGAACC	57.298	32.000	0.00	0.00	0.00	3.62
2976	3180	3.225177	TCAAATTACCAACGAACCCCA	57.775	42.857	0.00	0.00	0.00	4.96
2995	3199	3.054139	CCCATCCTCTTTCAGGTGATGAA	60.054	47.826	0.00	0.00	46.31	2.57
3054	3269	0.112995	TCCTTCAAGCAAGCCATGGT	59.887	50.000	14.67	0.00	42.88	3.55
3077	3292	5.805486	GTGAGGTGAAAACAAAGAGGAAAAC	59.195	40.000	0.00	0.00	0.00	2.43
3079	3294	5.965922	AGGTGAAAACAAAGAGGAAAACTG	58.034	37.500	0.00	0.00	0.00	3.16
3083	3298	7.090808	GTGAAAACAAAGAGGAAAACTGAAGT	58.909	34.615	0.00	0.00	0.00	3.01
3136	3352	0.032912	TCCATGCCATTGCCTCACAT	60.033	50.000	0.00	0.00	36.33	3.21
3140	3356	3.305813	CCATGCCATTGCCTCACATTATC	60.306	47.826	0.00	0.00	36.33	1.75
3141	3357	2.309613	TGCCATTGCCTCACATTATCC	58.690	47.619	0.00	0.00	36.33	2.59
3143	3359	2.948115	CCATTGCCTCACATTATCCCA	58.052	47.619	0.00	0.00	0.00	4.37
3145	3361	3.068590	CCATTGCCTCACATTATCCCAAC	59.931	47.826	0.00	0.00	0.00	3.77
3146	3362	2.036958	TGCCTCACATTATCCCAACG	57.963	50.000	0.00	0.00	0.00	4.10
3167	3383	2.239654	GGAAACATGATCCACTCCCTCA	59.760	50.000	14.74	0.00	36.92	3.86
3172	3388	3.267812	ACATGATCCACTCCCTCAATGTT	59.732	43.478	0.00	0.00	0.00	2.71
3207	3423	1.079474	TCGCGTATGCAGGCAAAGA	60.079	52.632	5.77	0.00	42.97	2.52
3213	3429	2.009774	GTATGCAGGCAAAGACGACAT	58.990	47.619	0.00	0.00	0.00	3.06
3215	3431	0.534877	TGCAGGCAAAGACGACATGT	60.535	50.000	0.00	0.00	0.00	3.21
3229	3445	3.192844	ACGACATGTTCCACGTCTTCTAT	59.807	43.478	0.00	0.00	33.80	1.98
3298	3515	2.730928	GGCCACACGTCAATCAATTTTG	59.269	45.455	0.00	0.00	0.00	2.44
3311	3528	8.956426	GTCAATCAATTTTGGAGACCTACATTA	58.044	33.333	0.00	0.00	0.00	1.90
3343	3560	0.038892	GTTCGTACCCGAGCAAGTGA	60.039	55.000	0.00	0.00	45.24	3.41
3359	3576	7.093322	AGCAAGTGAAGTTAATGGATTCATC	57.907	36.000	0.00	0.00	35.56	2.92
3361	3578	8.049117	AGCAAGTGAAGTTAATGGATTCATCTA	58.951	33.333	0.00	0.00	35.56	1.98
3373	3590	5.423015	TGGATTCATCTAGTTGAGTTCTGC	58.577	41.667	3.80	0.00	0.00	4.26
3389	3606	8.011844	TGAGTTCTGCTACAATACATCATACT	57.988	34.615	0.00	0.00	0.00	2.12
3424	3641	0.386352	CGACACCGTTTCTCGTGCTA	60.386	55.000	0.00	0.00	37.94	3.49
3436	3653	0.671796	TCGTGCTATATGGTCACCGG	59.328	55.000	0.00	0.00	0.00	5.28
3448	3665	4.690719	CACCGGCCGCACCACTTA	62.691	66.667	22.85	0.00	39.03	2.24
3477	3694	1.003355	CGGAATCAGTGGCAGTGGT	60.003	57.895	21.53	12.77	0.00	4.16

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
5	6	9.533831	AATGTTTCAGGTAATTCAGAACCTATT	57.466	29.630	0.00	0.00	44.43	1.73
185	194	6.704493	AGTTATTCACTTGAACGAGCAAAGTA	59.296	34.615	0.00	0.00	36.80	2.24
186	195	5.527582	AGTTATTCACTTGAACGAGCAAAGT	59.472	36.000	0.00	0.00	36.80	2.66
269	280	6.952358	AGTTGTCAAGTATAGTGTTCCCTCTA	59.048	38.462	0.00	0.00	0.00	2.43
300	311	5.663773	GCAAAGAATTCGTTTTTCATCTGCG	60.664	40.000	3.71	0.00	0.00	5.18
446	588	8.579850	TTAATTAGTTCTCCATGTTCATGCTT	57.420	30.769	7.21	0.00	0.00	3.91
485	627	6.245408	ACAACAAGAAACCATAATAGCTGGA	58.755	36.000	0.00	0.00	37.22	3.86
487	629	7.592938	TGAACAACAAGAAACCATAATAGCTG	58.407	34.615	0.00	0.00	0.00	4.24
530	680	9.807649	GAAGCAAAATAGGATTTCATTGTGTAT	57.192	29.630	0.00	0.00	0.00	2.29
759	912	5.245531	CCATGGAGTACAAAAGTTGCTCTA	58.754	41.667	5.56	0.00	0.00	2.43
808	967	7.841486	CATGTGTCCTTATAAACTACATGTCG	58.159	38.462	0.00	0.00	39.15	4.35
1272	1437	3.133901	TGTCAAAGCCTACACTGTCTTGA	59.866	43.478	0.00	0.00	0.00	3.02
1368	1534	3.118884	GCATGGCCTTGTCATCATTTTCT	60.119	43.478	19.05	0.00	0.00	2.52
1371	1537	1.135527	CGCATGGCCTTGTCATCATTT	59.864	47.619	19.05	0.00	0.00	2.32
1497	1663	6.148811	AGTTGGTGGTGTAAAGATAAACATCG	59.851	38.462	0.00	0.00	28.91	3.84
1746	1914	0.322456	TCCCAAACATGCTCCTTCCG	60.322	55.000	0.00	0.00	0.00	4.30
1975	2143	6.214412	GGATATTCTGTGGGATCTATGTTCCT	59.786	42.308	0.00	0.00	33.53	3.36
1979	2147	5.846164	TGTGGATATTCTGTGGGATCTATGT	59.154	40.000	0.00	0.00	0.00	2.29
1981	2149	6.560304	AGTTGTGGATATTCTGTGGGATCTAT	59.440	38.462	0.00	0.00	0.00	1.98
2011	2179	3.172339	TGGCAAACCCATCTGCTATTTT	58.828	40.909	0.00	0.00	39.18	1.82
2111	2279	1.472082	CCAATATGCAACGCCAGAACA	59.528	47.619	0.00	0.00	0.00	3.18
2528	2714	8.565896	ACATGAACACATCTGTTTACATGTAT	57.434	30.769	15.11	0.00	45.28	2.29
2529	2715	7.977789	ACATGAACACATCTGTTTACATGTA	57.022	32.000	15.11	0.08	45.28	2.29
2530	2716	6.882610	ACATGAACACATCTGTTTACATGT	57.117	33.333	12.45	12.45	43.88	3.21
2533	2719	9.108284	CCATATACATGAACACATCTGTTTACA	57.892	33.333	0.00	0.00	40.93	2.41
2534	2720	9.325198	TCCATATACATGAACACATCTGTTTAC	57.675	33.333	0.00	0.00	40.93	2.01
2587	2788	9.565213	ACAAGTTTACTATACGTTACATGAGAC	57.435	33.333	0.00	0.00	0.00	3.36
2624	2825	5.619132	TCATGAGCTGGATAGTTTGATCA	57.381	39.130	0.00	0.00	0.00	2.92
2639	2840	6.793492	AACAAAGACTAGAAGTTCATGAGC	57.207	37.500	5.50	0.50	0.00	4.26
2641	2842	9.698309	CTAGAAACAAAGACTAGAAGTTCATGA	57.302	33.333	5.50	0.00	36.65	3.07
2647	2848	8.697292	AGACAACTAGAAACAAAGACTAGAAGT	58.303	33.333	0.00	0.00	37.58	3.01
2660	2861	7.171678	AGCAACATTACTGAGACAACTAGAAAC	59.828	37.037	0.00	0.00	0.00	2.78
2696	2897	4.693042	TGATGATGATGCATGTACCTCA	57.307	40.909	2.46	0.00	0.00	3.86
2767	2971	4.142491	ACACGACAACACAACACATCAATT	60.142	37.500	0.00	0.00	0.00	2.32
2782	2986	2.038426	AGAATCCACATCCACACGACAA	59.962	45.455	0.00	0.00	0.00	3.18
2812	3016	8.753133	TGCAACTATAATCTGATCCGATCTAAT	58.247	33.333	9.78	0.91	0.00	1.73
2849	3053	8.976471	GCCTAGTCGGTTTCTTAATCTAATTAC	58.024	37.037	0.00	0.00	34.25	1.89
2880	3084	1.933853	GTGCTCGCCTATGTCGAATTT	59.066	47.619	0.00	0.00	35.38	1.82
2881	3085	1.571919	GTGCTCGCCTATGTCGAATT	58.428	50.000	0.00	0.00	35.38	2.17
2884	3088	1.320344	AAGGTGCTCGCCTATGTCGA	61.320	55.000	1.97	0.00	38.03	4.20
2886	3090	0.530870	GGAAGGTGCTCGCCTATGTC	60.531	60.000	1.97	0.00	38.03	3.06
2895	3099	2.887152	ACTGATTTTGTGGAAGGTGCTC	59.113	45.455	0.00	0.00	0.00	4.26
2899	3103	8.088365	GCTAAATTTACTGATTTTGTGGAAGGT	58.912	33.333	0.00	0.00	31.96	3.50
2937	3141	6.595772	TTTGAAATTGAAATGGTTTCGGTG	57.404	33.333	0.00	0.00	42.55	4.94
2940	3144	8.768955	TGGTAATTTGAAATTGAAATGGTTTCG	58.231	29.630	13.08	0.00	42.55	3.46
2973	3177	2.507058	TCATCACCTGAAAGAGGATGGG	59.493	50.000	0.00	0.00	46.33	4.00
3023	3233	1.001406	CTTGAAGGAGAGAGCCAACGT	59.999	52.381	0.00	0.00	0.00	3.99
3054	3269	5.714806	AGTTTTCCTCTTTGTTTTCACCTCA	59.285	36.000	0.00	0.00	0.00	3.86
3077	3292	1.227089	CCTCGCGGATGGACTTCAG	60.227	63.158	6.13	0.00	0.00	3.02
3079	3294	1.956629	TTCCCTCGCGGATGGACTTC	61.957	60.000	6.13	0.00	41.63	3.01
3083	3298	2.582436	GTTTCCCTCGCGGATGGA	59.418	61.111	6.13	7.22	41.63	3.41
3136	3352	4.204012	GGATCATGTTTCCGTTGGGATAA	58.796	43.478	0.00	0.00	43.41	1.75
3140	3356	1.472480	GTGGATCATGTTTCCGTTGGG	59.528	52.381	11.24	0.00	35.94	4.12
3141	3357	2.420022	GAGTGGATCATGTTTCCGTTGG	59.580	50.000	11.24	0.00	35.94	3.77
3143	3359	2.618045	GGGAGTGGATCATGTTTCCGTT	60.618	50.000	11.24	4.05	35.94	4.44
3145	3361	1.210478	AGGGAGTGGATCATGTTTCCG	59.790	52.381	11.24	0.00	35.94	4.30
3146	3362	2.239654	TGAGGGAGTGGATCATGTTTCC	59.760	50.000	9.64	9.64	0.00	3.13
3167	3383	1.726791	CACGAAGTCGCAGCTAACATT	59.273	47.619	0.00	0.00	41.61	2.71
3172	3388	1.211969	GACCACGAAGTCGCAGCTA	59.788	57.895	0.00	0.00	41.61	3.32
3213	3429	1.403647	CGCCATAGAAGACGTGGAACA	60.404	52.381	0.00	0.00	35.74	3.18
3215	3431	0.174845	CCGCCATAGAAGACGTGGAA	59.825	55.000	0.00	0.00	34.94	3.53
3276	3492	1.909700	AATTGATTGACGTGTGGCCT	58.090	45.000	3.32	0.00	0.00	5.19
3298	3515	7.500992	TGATGAAACATCTAATGTAGGTCTCC	58.499	38.462	11.98	0.00	44.07	3.71
3311	3528	4.504858	GGGTACGAACTGATGAAACATCT	58.495	43.478	11.98	0.00	0.00	2.90
3343	3560	9.965902	AACTCAACTAGATGAATCCATTAACTT	57.034	29.630	4.11	0.00	32.09	2.66
3359	3576	7.976175	TGATGTATTGTAGCAGAACTCAACTAG	59.024	37.037	0.00	0.00	0.00	2.57
3361	3578	6.701340	TGATGTATTGTAGCAGAACTCAACT	58.299	36.000	0.00	0.00	0.00	3.16
3420	3637	1.752198	GGCCGGTGACCATATAGCA	59.248	57.895	1.90	0.00	0.00	3.49
3424	3641	3.475494	TGCGGCCGGTGACCATAT	61.475	61.111	29.38	0.00	0.00	1.78
3436	3653	2.438434	ATGCCTAAGTGGTGCGGC	60.438	61.111	0.00	0.00	42.78	6.53
3448	3665	0.467384	CTGATTCCGTGGAGATGCCT	59.533	55.000	0.00	0.00	37.63	4.75

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.