Multiple sequence alignment - TraesCS2B01G024900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G024900 chr2B 100.000 3491 0 0 1 3491 11455226 11451736 0.000000e+00 6447
1 TraesCS2B01G024900 chr2B 92.919 2556 143 12 848 3379 12966279 12968820 0.000000e+00 3683
2 TraesCS2B01G024900 chr2B 81.906 1553 224 27 998 2533 138993293 138991781 0.000000e+00 1258
3 TraesCS2B01G024900 chr2B 95.575 113 4 1 3379 3491 12968847 12968958 2.770000e-41 180
4 TraesCS2B01G024900 chr2B 77.027 222 33 8 910 1125 4759865 4759656 1.020000e-20 111
5 TraesCS2B01G024900 chr2D 89.812 3298 200 58 249 3491 9642221 9645437 0.000000e+00 4104
6 TraesCS2B01G024900 chr2D 80.792 1718 254 40 998 2696 85929585 85927925 0.000000e+00 1275
7 TraesCS2B01G024900 chr2D 81.900 1547 236 22 916 2438 8659700 8661226 0.000000e+00 1266
8 TraesCS2B01G024900 chr2D 80.277 1658 260 33 899 2533 9753304 9751691 0.000000e+00 1188
9 TraesCS2B01G024900 chr2D 77.978 1998 344 52 574 2533 9880180 9878241 0.000000e+00 1164
10 TraesCS2B01G024900 chr2D 80.508 1534 262 22 998 2521 19587012 19588518 0.000000e+00 1142
11 TraesCS2B01G024900 chr2D 80.387 1499 216 42 898 2372 8479453 8478009 0.000000e+00 1068
12 TraesCS2B01G024900 chr2A 89.796 2499 178 25 249 2732 8726590 8729026 0.000000e+00 3131
13 TraesCS2B01G024900 chr2A 78.543 1990 348 40 574 2533 9394707 9396647 0.000000e+00 1236
14 TraesCS2B01G024900 chr2A 78.492 1990 349 40 574 2533 9847184 9849124 0.000000e+00 1230
15 TraesCS2B01G024900 chr2A 80.701 1627 257 30 917 2517 7727305 7728900 0.000000e+00 1212
16 TraesCS2B01G024900 chr2A 82.395 835 59 32 2715 3491 8729044 8729848 0.000000e+00 647
17 TraesCS2B01G024900 chr6B 91.379 116 9 1 146 260 693916551 693916436 1.300000e-34 158
18 TraesCS2B01G024900 chr4A 95.876 97 4 0 154 250 522595673 522595769 1.300000e-34 158
19 TraesCS2B01G024900 chr4A 92.233 103 8 0 154 256 743518592 743518490 2.810000e-31 147
20 TraesCS2B01G024900 chr7D 94.845 97 5 0 154 250 146998241 146998145 6.040000e-33 152
21 TraesCS2B01G024900 chr7D 94.845 97 5 0 154 250 607031891 607031987 6.040000e-33 152
22 TraesCS2B01G024900 chr7D 91.429 105 7 2 147 250 506720863 506720966 3.630000e-30 143
23 TraesCS2B01G024900 chr1A 94.845 97 5 0 154 250 204418826 204418922 6.040000e-33 152
24 TraesCS2B01G024900 chr3D 93.878 98 6 0 153 250 25388102 25388005 7.810000e-32 148
25 TraesCS2B01G024900 chr4D 92.157 102 8 0 150 251 428582823 428582924 1.010000e-30 145


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G024900 chr2B 11451736 11455226 3490 True 6447.0 6447 100.0000 1 3491 1 chr2B.!!$R2 3490
1 TraesCS2B01G024900 chr2B 12966279 12968958 2679 False 1931.5 3683 94.2470 848 3491 2 chr2B.!!$F1 2643
2 TraesCS2B01G024900 chr2B 138991781 138993293 1512 True 1258.0 1258 81.9060 998 2533 1 chr2B.!!$R3 1535
3 TraesCS2B01G024900 chr2D 9642221 9645437 3216 False 4104.0 4104 89.8120 249 3491 1 chr2D.!!$F2 3242
4 TraesCS2B01G024900 chr2D 85927925 85929585 1660 True 1275.0 1275 80.7920 998 2696 1 chr2D.!!$R4 1698
5 TraesCS2B01G024900 chr2D 8659700 8661226 1526 False 1266.0 1266 81.9000 916 2438 1 chr2D.!!$F1 1522
6 TraesCS2B01G024900 chr2D 9751691 9753304 1613 True 1188.0 1188 80.2770 899 2533 1 chr2D.!!$R2 1634
7 TraesCS2B01G024900 chr2D 9878241 9880180 1939 True 1164.0 1164 77.9780 574 2533 1 chr2D.!!$R3 1959
8 TraesCS2B01G024900 chr2D 19587012 19588518 1506 False 1142.0 1142 80.5080 998 2521 1 chr2D.!!$F3 1523
9 TraesCS2B01G024900 chr2D 8478009 8479453 1444 True 1068.0 1068 80.3870 898 2372 1 chr2D.!!$R1 1474
10 TraesCS2B01G024900 chr2A 8726590 8729848 3258 False 1889.0 3131 86.0955 249 3491 2 chr2A.!!$F4 3242
11 TraesCS2B01G024900 chr2A 9394707 9396647 1940 False 1236.0 1236 78.5430 574 2533 1 chr2A.!!$F2 1959
12 TraesCS2B01G024900 chr2A 9847184 9849124 1940 False 1230.0 1230 78.4920 574 2533 1 chr2A.!!$F3 1959
13 TraesCS2B01G024900 chr2A 7727305 7728900 1595 False 1212.0 1212 80.7010 917 2517 1 chr2A.!!$F1 1600

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
96 97 0.038455 CCAACCATTACGGGGGACAA 59.962 55.0 0.0 0.0 40.22 3.18 F
828 845 0.110464 GAAAGAGTCGCTGTGCTTGC 60.110 55.0 0.0 0.0 0.00 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1266 1319 0.601046 CGAAGCCTGCACTGTCTTGA 60.601 55.0 0.00 0.0 0.0 3.02 R
2735 2895 0.037590 TGGCGCCCAACAGACTTAAT 59.962 50.0 26.77 0.0 0.0 1.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 3.364277 GGATACGACCTGCAACTCC 57.636 57.895 0.00 0.00 0.00 3.85
33 34 0.824759 GGATACGACCTGCAACTCCT 59.175 55.000 0.00 0.00 0.00 3.69
34 35 1.202428 GGATACGACCTGCAACTCCTC 60.202 57.143 0.00 0.00 0.00 3.71
35 36 0.824759 ATACGACCTGCAACTCCTCC 59.175 55.000 0.00 0.00 0.00 4.30
36 37 1.592400 TACGACCTGCAACTCCTCCG 61.592 60.000 0.00 0.00 0.00 4.63
37 38 2.932234 CGACCTGCAACTCCTCCGT 61.932 63.158 0.00 0.00 0.00 4.69
38 39 1.371558 GACCTGCAACTCCTCCGTT 59.628 57.895 0.00 0.00 0.00 4.44
39 40 0.606604 GACCTGCAACTCCTCCGTTA 59.393 55.000 0.00 0.00 0.00 3.18
40 41 0.608640 ACCTGCAACTCCTCCGTTAG 59.391 55.000 0.00 0.00 0.00 2.34
41 42 0.608640 CCTGCAACTCCTCCGTTAGT 59.391 55.000 0.00 0.00 0.00 2.24
42 43 1.822990 CCTGCAACTCCTCCGTTAGTA 59.177 52.381 0.00 0.00 0.00 1.82
43 44 2.159226 CCTGCAACTCCTCCGTTAGTAG 60.159 54.545 0.00 0.00 0.00 2.57
44 45 1.203994 TGCAACTCCTCCGTTAGTAGC 59.796 52.381 0.00 0.00 0.00 3.58
45 46 1.477295 GCAACTCCTCCGTTAGTAGCT 59.523 52.381 0.00 0.00 0.00 3.32
46 47 2.094130 GCAACTCCTCCGTTAGTAGCTT 60.094 50.000 0.00 0.00 0.00 3.74
47 48 3.512680 CAACTCCTCCGTTAGTAGCTTG 58.487 50.000 0.00 0.00 0.00 4.01
48 49 2.805194 ACTCCTCCGTTAGTAGCTTGT 58.195 47.619 0.00 0.00 0.00 3.16
49 50 2.754002 ACTCCTCCGTTAGTAGCTTGTC 59.246 50.000 0.00 0.00 0.00 3.18
50 51 3.018149 CTCCTCCGTTAGTAGCTTGTCT 58.982 50.000 0.00 0.00 0.00 3.41
51 52 2.753452 TCCTCCGTTAGTAGCTTGTCTG 59.247 50.000 0.00 0.00 0.00 3.51
52 53 2.531206 CTCCGTTAGTAGCTTGTCTGC 58.469 52.381 0.00 0.00 0.00 4.26
53 54 1.890489 TCCGTTAGTAGCTTGTCTGCA 59.110 47.619 0.00 0.00 34.99 4.41
54 55 2.297880 TCCGTTAGTAGCTTGTCTGCAA 59.702 45.455 0.00 0.00 34.99 4.08
62 63 3.742290 CTTGTCTGCAAGTGAAGCG 57.258 52.632 0.00 0.00 45.18 4.68
63 64 0.385223 CTTGTCTGCAAGTGAAGCGC 60.385 55.000 0.00 0.00 45.18 5.92
64 65 0.815213 TTGTCTGCAAGTGAAGCGCT 60.815 50.000 2.64 2.64 33.76 5.92
65 66 0.815213 TGTCTGCAAGTGAAGCGCTT 60.815 50.000 25.35 25.35 34.27 4.68
66 67 0.308993 GTCTGCAAGTGAAGCGCTTT 59.691 50.000 25.84 5.37 31.36 3.51
67 68 1.024271 TCTGCAAGTGAAGCGCTTTT 58.976 45.000 25.84 12.19 31.36 2.27
68 69 1.126079 CTGCAAGTGAAGCGCTTTTG 58.874 50.000 25.84 23.98 31.36 2.44
69 70 0.871163 TGCAAGTGAAGCGCTTTTGC 60.871 50.000 34.77 34.77 43.21 3.68
71 72 1.402511 CAAGTGAAGCGCTTTTGCTC 58.597 50.000 25.84 11.89 46.60 4.26
72 73 1.002033 CAAGTGAAGCGCTTTTGCTCT 60.002 47.619 25.84 14.46 46.60 4.09
73 74 0.871057 AGTGAAGCGCTTTTGCTCTC 59.129 50.000 25.84 11.87 46.60 3.20
74 75 0.588252 GTGAAGCGCTTTTGCTCTCA 59.412 50.000 25.84 13.10 46.60 3.27
75 76 1.198637 GTGAAGCGCTTTTGCTCTCAT 59.801 47.619 25.84 0.00 46.60 2.90
76 77 1.466167 TGAAGCGCTTTTGCTCTCATC 59.534 47.619 25.84 7.83 46.60 2.92
77 78 0.807496 AAGCGCTTTTGCTCTCATCC 59.193 50.000 18.98 0.00 46.60 3.51
78 79 1.028868 AGCGCTTTTGCTCTCATCCC 61.029 55.000 2.64 0.00 42.95 3.85
79 80 1.308069 GCGCTTTTGCTCTCATCCCA 61.308 55.000 0.00 0.00 44.80 4.37
80 81 1.167851 CGCTTTTGCTCTCATCCCAA 58.832 50.000 0.00 0.00 44.80 4.12
81 82 1.135575 CGCTTTTGCTCTCATCCCAAC 60.136 52.381 0.00 0.00 44.80 3.77
82 83 1.203287 GCTTTTGCTCTCATCCCAACC 59.797 52.381 0.00 0.00 43.35 3.77
83 84 2.517959 CTTTTGCTCTCATCCCAACCA 58.482 47.619 0.00 0.00 0.00 3.67
84 85 2.905415 TTTGCTCTCATCCCAACCAT 57.095 45.000 0.00 0.00 0.00 3.55
85 86 2.905415 TTGCTCTCATCCCAACCATT 57.095 45.000 0.00 0.00 0.00 3.16
86 87 4.314522 TTTGCTCTCATCCCAACCATTA 57.685 40.909 0.00 0.00 0.00 1.90
87 88 3.281727 TGCTCTCATCCCAACCATTAC 57.718 47.619 0.00 0.00 0.00 1.89
88 89 2.213499 GCTCTCATCCCAACCATTACG 58.787 52.381 0.00 0.00 0.00 3.18
89 90 2.838736 CTCTCATCCCAACCATTACGG 58.161 52.381 0.00 0.00 42.50 4.02
90 91 1.488812 TCTCATCCCAACCATTACGGG 59.511 52.381 0.00 0.00 41.76 5.28
91 92 0.548989 TCATCCCAACCATTACGGGG 59.451 55.000 0.00 0.00 40.68 5.73
92 93 0.467290 CATCCCAACCATTACGGGGG 60.467 60.000 0.00 0.00 41.11 5.40
93 94 0.625091 ATCCCAACCATTACGGGGGA 60.625 55.000 0.00 0.00 46.23 4.81
94 95 1.077285 CCCAACCATTACGGGGGAC 60.077 63.158 0.00 0.00 38.29 4.46
95 96 1.686416 CCAACCATTACGGGGGACA 59.314 57.895 0.00 0.00 40.22 4.02
96 97 0.038455 CCAACCATTACGGGGGACAA 59.962 55.000 0.00 0.00 40.22 3.18
97 98 1.548128 CCAACCATTACGGGGGACAAA 60.548 52.381 0.00 0.00 40.22 2.83
98 99 2.240279 CAACCATTACGGGGGACAAAA 58.760 47.619 0.00 0.00 40.22 2.44
99 100 2.628657 CAACCATTACGGGGGACAAAAA 59.371 45.455 0.00 0.00 40.22 1.94
100 101 2.241160 ACCATTACGGGGGACAAAAAC 58.759 47.619 0.00 0.00 40.22 2.43
101 102 2.240279 CCATTACGGGGGACAAAAACA 58.760 47.619 0.00 0.00 0.00 2.83
102 103 2.230266 CCATTACGGGGGACAAAAACAG 59.770 50.000 0.00 0.00 0.00 3.16
103 104 2.732844 TTACGGGGGACAAAAACAGT 57.267 45.000 0.00 0.00 0.00 3.55
104 105 2.732844 TACGGGGGACAAAAACAGTT 57.267 45.000 0.00 0.00 0.00 3.16
105 106 1.855295 ACGGGGGACAAAAACAGTTT 58.145 45.000 0.00 0.00 0.00 2.66
106 107 1.752498 ACGGGGGACAAAAACAGTTTC 59.248 47.619 0.00 0.00 0.00 2.78
107 108 1.751924 CGGGGGACAAAAACAGTTTCA 59.248 47.619 0.00 0.00 0.00 2.69
108 109 2.364002 CGGGGGACAAAAACAGTTTCAT 59.636 45.455 0.00 0.00 0.00 2.57
109 110 3.727726 GGGGGACAAAAACAGTTTCATG 58.272 45.455 0.00 4.77 0.00 3.07
110 111 3.133901 GGGGGACAAAAACAGTTTCATGT 59.866 43.478 14.26 14.26 33.96 3.21
111 112 4.342665 GGGGGACAAAAACAGTTTCATGTA 59.657 41.667 14.32 0.00 31.70 2.29
112 113 5.286438 GGGGACAAAAACAGTTTCATGTAC 58.714 41.667 14.68 14.68 31.70 2.90
113 114 4.973663 GGGACAAAAACAGTTTCATGTACG 59.026 41.667 15.80 0.00 31.70 3.67
114 115 4.439776 GGACAAAAACAGTTTCATGTACGC 59.560 41.667 14.32 5.84 31.70 4.42
115 116 4.987832 ACAAAAACAGTTTCATGTACGCA 58.012 34.783 13.21 0.00 31.70 5.24
116 117 5.034152 ACAAAAACAGTTTCATGTACGCAG 58.966 37.500 13.21 0.00 31.70 5.18
117 118 5.163703 ACAAAAACAGTTTCATGTACGCAGA 60.164 36.000 13.21 0.00 31.70 4.26
118 119 5.689383 AAAACAGTTTCATGTACGCAGAT 57.311 34.783 0.00 0.00 31.70 2.90
119 120 6.795098 AAAACAGTTTCATGTACGCAGATA 57.205 33.333 0.00 0.00 31.70 1.98
120 121 6.795098 AAACAGTTTCATGTACGCAGATAA 57.205 33.333 0.00 0.00 31.70 1.75
121 122 5.779806 ACAGTTTCATGTACGCAGATAAC 57.220 39.130 0.00 0.00 0.00 1.89
122 123 5.479306 ACAGTTTCATGTACGCAGATAACT 58.521 37.500 0.00 0.00 0.00 2.24
123 124 5.577164 ACAGTTTCATGTACGCAGATAACTC 59.423 40.000 0.00 0.00 0.00 3.01
124 125 5.005779 CAGTTTCATGTACGCAGATAACTCC 59.994 44.000 0.00 0.00 0.00 3.85
125 126 5.105310 AGTTTCATGTACGCAGATAACTCCT 60.105 40.000 0.00 0.00 0.00 3.69
126 127 6.096423 AGTTTCATGTACGCAGATAACTCCTA 59.904 38.462 0.00 0.00 0.00 2.94
127 128 5.690997 TCATGTACGCAGATAACTCCTAG 57.309 43.478 0.00 0.00 0.00 3.02
128 129 5.131067 TCATGTACGCAGATAACTCCTAGT 58.869 41.667 0.00 0.00 0.00 2.57
129 130 5.593095 TCATGTACGCAGATAACTCCTAGTT 59.407 40.000 0.00 0.00 41.97 2.24
130 131 5.909621 TGTACGCAGATAACTCCTAGTTT 57.090 39.130 0.00 0.00 39.51 2.66
131 132 5.888105 TGTACGCAGATAACTCCTAGTTTC 58.112 41.667 0.00 0.00 39.51 2.78
132 133 4.030134 ACGCAGATAACTCCTAGTTTCG 57.970 45.455 0.00 0.00 39.51 3.46
133 134 3.442977 ACGCAGATAACTCCTAGTTTCGT 59.557 43.478 0.00 0.00 39.51 3.85
134 135 4.036352 CGCAGATAACTCCTAGTTTCGTC 58.964 47.826 0.00 0.00 39.51 4.20
135 136 4.036352 GCAGATAACTCCTAGTTTCGTCG 58.964 47.826 0.00 0.00 39.51 5.12
136 137 4.438472 GCAGATAACTCCTAGTTTCGTCGT 60.438 45.833 0.00 0.00 39.51 4.34
137 138 5.264712 CAGATAACTCCTAGTTTCGTCGTC 58.735 45.833 0.00 0.00 39.51 4.20
138 139 4.940046 AGATAACTCCTAGTTTCGTCGTCA 59.060 41.667 0.00 0.00 39.51 4.35
139 140 5.589452 AGATAACTCCTAGTTTCGTCGTCAT 59.411 40.000 0.00 0.00 39.51 3.06
140 141 6.765036 AGATAACTCCTAGTTTCGTCGTCATA 59.235 38.462 0.00 0.00 39.51 2.15
141 142 4.612932 ACTCCTAGTTTCGTCGTCATAC 57.387 45.455 0.00 0.00 0.00 2.39
142 143 4.005650 ACTCCTAGTTTCGTCGTCATACA 58.994 43.478 0.00 0.00 0.00 2.29
143 144 4.456911 ACTCCTAGTTTCGTCGTCATACAA 59.543 41.667 0.00 0.00 0.00 2.41
144 145 4.978186 TCCTAGTTTCGTCGTCATACAAG 58.022 43.478 0.00 0.00 0.00 3.16
145 146 4.456911 TCCTAGTTTCGTCGTCATACAAGT 59.543 41.667 0.00 0.00 0.00 3.16
146 147 5.048504 TCCTAGTTTCGTCGTCATACAAGTT 60.049 40.000 0.00 0.00 0.00 2.66
147 148 4.966850 AGTTTCGTCGTCATACAAGTTG 57.033 40.909 0.00 0.00 0.00 3.16
148 149 4.365723 AGTTTCGTCGTCATACAAGTTGT 58.634 39.130 14.05 14.05 0.00 3.32
149 150 4.208460 AGTTTCGTCGTCATACAAGTTGTG 59.792 41.667 18.90 2.88 0.00 3.33
150 151 3.358707 TCGTCGTCATACAAGTTGTGT 57.641 42.857 18.90 9.28 44.82 3.72
151 152 3.302555 TCGTCGTCATACAAGTTGTGTC 58.697 45.455 18.90 0.25 41.98 3.67
152 153 3.047093 CGTCGTCATACAAGTTGTGTCA 58.953 45.455 18.90 0.00 41.98 3.58
153 154 3.673338 CGTCGTCATACAAGTTGTGTCAT 59.327 43.478 18.90 1.16 41.98 3.06
154 155 4.854839 CGTCGTCATACAAGTTGTGTCATA 59.145 41.667 18.90 0.00 41.98 2.15
155 156 5.219969 CGTCGTCATACAAGTTGTGTCATAC 60.220 44.000 18.90 8.64 41.98 2.39
156 157 5.862323 GTCGTCATACAAGTTGTGTCATACT 59.138 40.000 18.90 0.00 41.98 2.12
157 158 6.365247 GTCGTCATACAAGTTGTGTCATACTT 59.635 38.462 18.90 0.00 41.98 2.24
158 159 6.584942 TCGTCATACAAGTTGTGTCATACTTC 59.415 38.462 18.90 0.00 41.98 3.01
159 160 6.183360 CGTCATACAAGTTGTGTCATACTTCC 60.183 42.308 18.90 0.00 41.98 3.46
160 161 6.874134 GTCATACAAGTTGTGTCATACTTCCT 59.126 38.462 18.90 0.00 41.98 3.36
161 162 7.063544 GTCATACAAGTTGTGTCATACTTCCTC 59.936 40.741 18.90 0.00 41.98 3.71
162 163 4.642429 ACAAGTTGTGTCATACTTCCTCC 58.358 43.478 7.96 0.00 34.38 4.30
163 164 3.594603 AGTTGTGTCATACTTCCTCCG 57.405 47.619 0.00 0.00 0.00 4.63
164 165 2.897969 AGTTGTGTCATACTTCCTCCGT 59.102 45.455 0.00 0.00 0.00 4.69
165 166 3.056749 AGTTGTGTCATACTTCCTCCGTC 60.057 47.826 0.00 0.00 0.00 4.79
166 167 1.822990 TGTGTCATACTTCCTCCGTCC 59.177 52.381 0.00 0.00 0.00 4.79
167 168 1.136500 GTGTCATACTTCCTCCGTCCC 59.864 57.143 0.00 0.00 0.00 4.46
168 169 1.272816 TGTCATACTTCCTCCGTCCCA 60.273 52.381 0.00 0.00 0.00 4.37
169 170 1.829222 GTCATACTTCCTCCGTCCCAA 59.171 52.381 0.00 0.00 0.00 4.12
170 171 2.235402 GTCATACTTCCTCCGTCCCAAA 59.765 50.000 0.00 0.00 0.00 3.28
171 172 2.907696 TCATACTTCCTCCGTCCCAAAA 59.092 45.455 0.00 0.00 0.00 2.44
172 173 3.521937 TCATACTTCCTCCGTCCCAAAAT 59.478 43.478 0.00 0.00 0.00 1.82
173 174 4.717778 TCATACTTCCTCCGTCCCAAAATA 59.282 41.667 0.00 0.00 0.00 1.40
174 175 5.190132 TCATACTTCCTCCGTCCCAAAATAA 59.810 40.000 0.00 0.00 0.00 1.40
175 176 3.951663 ACTTCCTCCGTCCCAAAATAAG 58.048 45.455 0.00 0.00 0.00 1.73
176 177 3.329814 ACTTCCTCCGTCCCAAAATAAGT 59.670 43.478 0.00 0.00 0.00 2.24
177 178 3.343941 TCCTCCGTCCCAAAATAAGTG 57.656 47.619 0.00 0.00 0.00 3.16
178 179 2.907696 TCCTCCGTCCCAAAATAAGTGA 59.092 45.455 0.00 0.00 0.00 3.41
179 180 3.007635 CCTCCGTCCCAAAATAAGTGAC 58.992 50.000 0.00 0.00 0.00 3.67
180 181 3.307480 CCTCCGTCCCAAAATAAGTGACT 60.307 47.826 0.00 0.00 0.00 3.41
181 182 3.933332 CTCCGTCCCAAAATAAGTGACTC 59.067 47.826 0.00 0.00 0.00 3.36
182 183 3.325425 TCCGTCCCAAAATAAGTGACTCA 59.675 43.478 0.00 0.00 0.00 3.41
183 184 4.069304 CCGTCCCAAAATAAGTGACTCAA 58.931 43.478 0.00 0.00 0.00 3.02
184 185 4.083484 CCGTCCCAAAATAAGTGACTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
185 186 4.755123 CGTCCCAAAATAAGTGACTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
186 187 5.238650 CGTCCCAAAATAAGTGACTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
187 188 6.238648 CGTCCCAAAATAAGTGACTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
188 189 6.918022 GTCCCAAAATAAGTGACTCAACTTTG 59.082 38.462 0.00 0.00 40.77 2.77
189 190 5.691754 CCCAAAATAAGTGACTCAACTTTGC 59.308 40.000 0.00 0.00 40.77 3.68
190 191 6.272318 CCAAAATAAGTGACTCAACTTTGCA 58.728 36.000 0.00 0.00 40.77 4.08
191 192 6.198966 CCAAAATAAGTGACTCAACTTTGCAC 59.801 38.462 0.00 0.00 40.77 4.57
192 193 6.699575 AAATAAGTGACTCAACTTTGCACT 57.300 33.333 0.00 0.00 40.77 4.40
193 194 7.801716 AAATAAGTGACTCAACTTTGCACTA 57.198 32.000 0.00 0.00 40.77 2.74
194 195 7.801716 AATAAGTGACTCAACTTTGCACTAA 57.198 32.000 0.00 0.00 40.77 2.24
195 196 5.485662 AAGTGACTCAACTTTGCACTAAC 57.514 39.130 0.00 0.00 37.05 2.34
196 197 4.513442 AGTGACTCAACTTTGCACTAACA 58.487 39.130 0.00 0.00 37.98 2.41
197 198 5.126067 AGTGACTCAACTTTGCACTAACAT 58.874 37.500 0.00 0.00 37.98 2.71
198 199 5.590259 AGTGACTCAACTTTGCACTAACATT 59.410 36.000 0.00 0.00 37.98 2.71
199 200 5.682862 GTGACTCAACTTTGCACTAACATTG 59.317 40.000 0.00 0.00 0.00 2.82
200 201 5.356751 TGACTCAACTTTGCACTAACATTGT 59.643 36.000 0.00 0.00 0.00 2.71
201 202 6.540551 TGACTCAACTTTGCACTAACATTGTA 59.459 34.615 0.00 0.00 0.00 2.41
202 203 6.725246 ACTCAACTTTGCACTAACATTGTAC 58.275 36.000 0.00 0.00 0.00 2.90
203 204 6.542370 ACTCAACTTTGCACTAACATTGTACT 59.458 34.615 0.00 0.00 0.00 2.73
204 205 7.713507 ACTCAACTTTGCACTAACATTGTACTA 59.286 33.333 0.00 0.00 0.00 1.82
205 206 8.439993 TCAACTTTGCACTAACATTGTACTAA 57.560 30.769 0.00 0.00 0.00 2.24
206 207 8.894731 TCAACTTTGCACTAACATTGTACTAAA 58.105 29.630 0.00 0.00 0.00 1.85
207 208 9.169468 CAACTTTGCACTAACATTGTACTAAAG 57.831 33.333 0.00 0.00 0.00 1.85
208 209 8.446599 ACTTTGCACTAACATTGTACTAAAGT 57.553 30.769 0.00 0.00 31.89 2.66
209 210 8.342634 ACTTTGCACTAACATTGTACTAAAGTG 58.657 33.333 0.00 10.30 34.50 3.16
210 211 8.439993 TTTGCACTAACATTGTACTAAAGTGA 57.560 30.769 14.89 0.00 35.93 3.41
211 212 8.439993 TTGCACTAACATTGTACTAAAGTGAA 57.560 30.769 14.89 6.57 35.93 3.18
212 213 8.615878 TGCACTAACATTGTACTAAAGTGAAT 57.384 30.769 14.89 0.00 35.93 2.57
213 214 8.503196 TGCACTAACATTGTACTAAAGTGAATG 58.497 33.333 14.89 11.98 35.93 2.67
214 215 7.481798 GCACTAACATTGTACTAAAGTGAATGC 59.518 37.037 14.89 3.73 35.93 3.56
215 216 8.503196 CACTAACATTGTACTAAAGTGAATGCA 58.497 33.333 12.89 0.00 35.93 3.96
216 217 9.062524 ACTAACATTGTACTAAAGTGAATGCAA 57.937 29.630 12.89 0.00 34.88 4.08
217 218 9.891828 CTAACATTGTACTAAAGTGAATGCAAA 57.108 29.630 12.89 3.43 34.88 3.68
218 219 8.801715 AACATTGTACTAAAGTGAATGCAAAG 57.198 30.769 12.89 0.00 34.88 2.77
219 220 7.940850 ACATTGTACTAAAGTGAATGCAAAGT 58.059 30.769 12.89 0.00 34.88 2.66
220 221 8.076178 ACATTGTACTAAAGTGAATGCAAAGTC 58.924 33.333 12.89 0.00 34.88 3.01
221 222 6.223138 TGTACTAAAGTGAATGCAAAGTCG 57.777 37.500 0.00 0.00 0.00 4.18
222 223 5.986741 TGTACTAAAGTGAATGCAAAGTCGA 59.013 36.000 0.00 0.00 0.00 4.20
223 224 5.597813 ACTAAAGTGAATGCAAAGTCGAG 57.402 39.130 0.00 0.00 0.00 4.04
224 225 5.057149 ACTAAAGTGAATGCAAAGTCGAGT 58.943 37.500 0.00 0.00 0.00 4.18
225 226 4.474226 AAAGTGAATGCAAAGTCGAGTC 57.526 40.909 0.00 0.00 0.00 3.36
226 227 3.111853 AGTGAATGCAAAGTCGAGTCA 57.888 42.857 0.00 0.00 0.00 3.41
227 228 2.802816 AGTGAATGCAAAGTCGAGTCAC 59.197 45.455 0.00 0.00 35.30 3.67
228 229 2.802816 GTGAATGCAAAGTCGAGTCACT 59.197 45.455 0.00 0.00 32.94 3.41
229 230 3.248602 GTGAATGCAAAGTCGAGTCACTT 59.751 43.478 0.00 3.11 38.30 3.16
230 231 4.447724 GTGAATGCAAAGTCGAGTCACTTA 59.552 41.667 0.00 0.00 35.45 2.24
231 232 5.050363 GTGAATGCAAAGTCGAGTCACTTAA 60.050 40.000 0.00 0.75 35.45 1.85
232 233 5.700832 TGAATGCAAAGTCGAGTCACTTAAT 59.299 36.000 0.00 2.47 35.45 1.40
233 234 6.204688 TGAATGCAAAGTCGAGTCACTTAATT 59.795 34.615 0.00 8.42 35.45 1.40
234 235 6.560253 ATGCAAAGTCGAGTCACTTAATTT 57.440 33.333 0.00 0.00 35.45 1.82
235 236 5.747565 TGCAAAGTCGAGTCACTTAATTTG 58.252 37.500 8.78 8.78 35.45 2.32
236 237 5.147162 GCAAAGTCGAGTCACTTAATTTGG 58.853 41.667 12.97 0.00 35.45 3.28
237 238 5.689819 CAAAGTCGAGTCACTTAATTTGGG 58.310 41.667 0.00 0.00 35.45 4.12
238 239 4.884668 AGTCGAGTCACTTAATTTGGGA 57.115 40.909 0.00 0.00 0.00 4.37
239 240 4.566987 AGTCGAGTCACTTAATTTGGGAC 58.433 43.478 5.66 5.66 0.00 4.46
240 241 3.367025 GTCGAGTCACTTAATTTGGGACG 59.633 47.826 7.56 0.00 33.84 4.79
241 242 2.671396 CGAGTCACTTAATTTGGGACGG 59.329 50.000 7.56 2.32 33.84 4.79
242 243 3.615592 CGAGTCACTTAATTTGGGACGGA 60.616 47.826 7.56 0.00 33.84 4.69
243 244 3.933332 GAGTCACTTAATTTGGGACGGAG 59.067 47.826 7.56 0.00 33.84 4.63
244 245 3.007635 GTCACTTAATTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
245 246 2.026636 TCACTTAATTTGGGACGGAGGG 60.027 50.000 0.00 0.00 0.00 4.30
246 247 2.026636 CACTTAATTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
247 248 2.238898 ACTTAATTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
251 252 0.178926 TTTGGGACGGAGGGAGTACA 60.179 55.000 0.00 0.00 0.00 2.90
265 267 4.765339 AGGGAGTACAATTTTCCTTTTCCG 59.235 41.667 0.00 0.00 0.00 4.30
270 272 7.493320 GGAGTACAATTTTCCTTTTCCGTTTTT 59.507 33.333 0.00 0.00 0.00 1.94
273 275 5.163703 ACAATTTTCCTTTTCCGTTTTTGCC 60.164 36.000 0.00 0.00 0.00 4.52
276 278 4.939052 TTCCTTTTCCGTTTTTGCCATA 57.061 36.364 0.00 0.00 0.00 2.74
281 283 4.873746 TTTCCGTTTTTGCCATATTGGA 57.126 36.364 0.00 0.00 40.96 3.53
283 285 3.691575 TCCGTTTTTGCCATATTGGAGA 58.308 40.909 0.00 0.00 40.96 3.71
285 287 5.441500 TCCGTTTTTGCCATATTGGAGATA 58.558 37.500 0.00 0.00 40.96 1.98
329 331 4.214971 CCCTGTAGAATGCATAAGATGTGC 59.785 45.833 0.00 0.00 42.81 4.57
340 342 1.198713 AAGATGTGCCAGTCTCCGAT 58.801 50.000 0.00 0.00 0.00 4.18
348 350 4.081365 TGTGCCAGTCTCCGATTAAATACA 60.081 41.667 0.00 0.00 0.00 2.29
355 357 8.195436 CCAGTCTCCGATTAAATACAGAACTAA 58.805 37.037 0.00 0.00 0.00 2.24
362 364 9.537848 CCGATTAAATACAGAACTAACACAAAC 57.462 33.333 0.00 0.00 0.00 2.93
368 370 9.840427 AAATACAGAACTAACACAAACATATGC 57.160 29.630 1.58 0.00 0.00 3.14
369 371 6.254281 ACAGAACTAACACAAACATATGCC 57.746 37.500 1.58 0.00 0.00 4.40
370 372 5.767665 ACAGAACTAACACAAACATATGCCA 59.232 36.000 1.58 0.00 0.00 4.92
372 374 5.767665 AGAACTAACACAAACATATGCCACA 59.232 36.000 1.58 0.00 0.00 4.17
383 393 7.992608 ACAAACATATGCCACATAGACTGATTA 59.007 33.333 1.58 0.00 0.00 1.75
388 398 5.023533 TGCCACATAGACTGATTAGGTTC 57.976 43.478 0.00 0.00 0.00 3.62
412 422 4.885325 TGAAGAAACCAACCAAAGGAGTAC 59.115 41.667 0.00 0.00 0.00 2.73
416 426 6.238648 AGAAACCAACCAAAGGAGTACATAG 58.761 40.000 0.00 0.00 0.00 2.23
421 431 5.878669 CCAACCAAAGGAGTACATAGGTTAC 59.121 44.000 0.00 0.00 36.22 2.50
436 446 6.385759 ACATAGGTTACATACATGTTCCCTGA 59.614 38.462 2.30 0.00 41.97 3.86
438 448 6.134535 AGGTTACATACATGTTCCCTGAAA 57.865 37.500 2.30 0.00 41.97 2.69
449 459 3.569701 TGTTCCCTGAAAGATTGCTGAAC 59.430 43.478 0.00 0.00 34.07 3.18
455 465 2.231964 TGAAAGATTGCTGAACCATGGC 59.768 45.455 13.04 0.00 0.00 4.40
465 475 1.539388 TGAACCATGGCGTTGTGATTC 59.461 47.619 13.04 6.08 0.00 2.52
485 495 2.912295 TCCCATCATCACTGACCAAGAA 59.088 45.455 0.00 0.00 33.22 2.52
527 540 3.356639 CCTGAGTTGCGCTCGGCTA 62.357 63.158 9.73 0.00 46.70 3.93
537 551 0.952280 CGCTCGGCTATTCTCCACTA 59.048 55.000 0.00 0.00 0.00 2.74
559 573 2.318908 AGTTCATCTGCAAAAGCCCAA 58.681 42.857 0.00 0.00 0.00 4.12
590 604 4.495422 CACGGTCAAACTATGCTAGAGTT 58.505 43.478 0.00 0.00 38.81 3.01
607 621 5.921962 AGAGTTGAGTGCACATATACTGA 57.078 39.130 21.04 0.00 0.00 3.41
612 626 9.914131 GAGTTGAGTGCACATATACTGAATATA 57.086 33.333 21.04 0.00 0.00 0.86
656 670 4.196193 ACGAGTCCAATGAAAGACAAACA 58.804 39.130 0.00 0.00 35.38 2.83
666 682 8.550376 CCAATGAAAGACAAACACCAAAATAAG 58.450 33.333 0.00 0.00 0.00 1.73
674 690 9.040939 AGACAAACACCAAAATAAGTTAAATGC 57.959 29.630 0.00 0.00 0.00 3.56
685 701 4.419522 AAGTTAAATGCACATGTCGGTC 57.580 40.909 0.00 0.00 0.00 4.79
696 712 4.792704 GCACATGTCGGTCTGTGAAAATTT 60.793 41.667 13.81 0.00 44.35 1.82
699 715 6.915300 CACATGTCGGTCTGTGAAAATTTAAA 59.085 34.615 0.00 0.00 44.35 1.52
743 759 2.096069 CAGTTGGCTTGTCATTCTCACG 60.096 50.000 0.00 0.00 0.00 4.35
766 783 9.731819 CACGCTTAAGATATAACTGTAGAAAGA 57.268 33.333 6.67 0.00 0.00 2.52
775 792 8.840200 ATATAACTGTAGAAAGAGTCCAAGGA 57.160 34.615 0.00 0.00 0.00 3.36
786 803 4.336280 AGAGTCCAAGGAAAGGCAATAAC 58.664 43.478 0.00 0.00 0.00 1.89
821 838 5.049398 ACTTACTGTAGAAAGAGTCGCTG 57.951 43.478 0.00 0.00 30.59 5.18
823 840 3.290308 ACTGTAGAAAGAGTCGCTGTG 57.710 47.619 0.00 0.00 0.00 3.66
828 845 0.110464 GAAAGAGTCGCTGTGCTTGC 60.110 55.000 0.00 0.00 0.00 4.01
838 855 1.563111 CTGTGCTTGCCAACTGTTTG 58.437 50.000 0.00 0.00 0.00 2.93
864 883 2.290832 TGCTTGGATAGTTGGCATGTCA 60.291 45.455 0.00 0.00 0.00 3.58
886 905 0.674895 GTCACATGTCAGCCACCCTC 60.675 60.000 0.00 0.00 0.00 4.30
908 927 5.116882 TCGTCTGAATCGAAGTCATCTCTA 58.883 41.667 2.92 0.00 34.36 2.43
972 996 4.082125 AGAGGCCCAGTTAAATTTGTCTG 58.918 43.478 0.00 8.86 0.00 3.51
1080 1121 5.186021 CCTGATGAACAAGTACCACTACTCT 59.814 44.000 0.00 0.00 31.42 3.24
1449 1502 6.563422 TGTTGCTAATATGGCAGAATTTGTC 58.437 36.000 3.52 0.96 40.90 3.18
1605 1670 2.102420 TGATGCACCGATCGTTATTCCT 59.898 45.455 15.09 0.00 0.00 3.36
2113 2184 2.811431 CTCCATGTTCAGTTTTGGCGTA 59.189 45.455 0.00 0.00 0.00 4.42
2130 2201 2.613691 CGTAGCGTATTGAACAAGGGT 58.386 47.619 0.00 0.00 0.00 4.34
2303 2386 1.613437 ACCACCAAGTGTTGCATTAGC 59.387 47.619 0.00 0.00 42.57 3.09
2409 2492 9.793252 AAATCATTCACTCATTATGTTACAAGC 57.207 29.630 0.00 0.00 0.00 4.01
2482 2571 1.587933 GAGGAAGCGACGAGGAGTGT 61.588 60.000 0.00 0.00 0.00 3.55
2568 2689 8.156994 ACAAACGGTTGTGTTTATGTATTACT 57.843 30.769 20.01 0.00 46.40 2.24
2646 2771 3.760738 TCATATCCAACAAACCAGCACA 58.239 40.909 0.00 0.00 0.00 4.57
2649 2774 5.245751 TCATATCCAACAAACCAGCACATTT 59.754 36.000 0.00 0.00 0.00 2.32
2663 2788 8.814038 ACCAGCACATTTTCTTCTTAGATAAT 57.186 30.769 0.00 0.00 33.87 1.28
2687 2812 7.643569 TGAATAACATCATTTACAGTGGCAT 57.356 32.000 0.00 0.00 0.00 4.40
2732 2892 7.064728 CAGTAAGGTGGCTTACAGTTAAAGATC 59.935 40.741 0.00 0.00 41.01 2.75
2735 2895 5.248477 AGGTGGCTTACAGTTAAAGATCAGA 59.752 40.000 0.00 0.00 0.00 3.27
2754 2931 0.037590 ATTAAGTCTGTTGGGCGCCA 59.962 50.000 30.85 12.04 0.00 5.69
2755 2932 0.605319 TTAAGTCTGTTGGGCGCCAG 60.605 55.000 30.85 17.48 33.81 4.85
2852 3042 5.049954 CCAAGGACAATTTCGAAGAACGTTA 60.050 40.000 0.00 0.00 45.90 3.18
2855 3045 5.929992 AGGACAATTTCGAAGAACGTTATCA 59.070 36.000 0.00 0.00 45.90 2.15
2887 3077 2.111878 GCACCACAGCACCAGTCT 59.888 61.111 0.00 0.00 0.00 3.24
2923 3113 2.910688 TTCTCACTCACCTGTGGTTC 57.089 50.000 0.00 0.00 38.40 3.62
2961 3151 7.925483 GTGAAGAATAGAGACAGACATAATGCT 59.075 37.037 0.00 0.00 0.00 3.79
3094 3286 2.613026 TTCAGCTCTGAACGTTTGGA 57.387 45.000 0.46 3.08 43.90 3.53
3112 3304 2.040947 TGGACTGTGGGCAAATGTATCA 59.959 45.455 0.00 0.00 0.00 2.15
3191 3387 8.579850 TTAAATATTCTGCTCAACTTGGTCAT 57.420 30.769 0.00 0.00 0.00 3.06
3192 3388 9.679661 TTAAATATTCTGCTCAACTTGGTCATA 57.320 29.630 0.00 0.00 0.00 2.15
3193 3389 8.579850 AAATATTCTGCTCAACTTGGTCATAA 57.420 30.769 0.00 0.00 0.00 1.90
3194 3390 5.886960 ATTCTGCTCAACTTGGTCATAAC 57.113 39.130 0.00 0.00 0.00 1.89
3195 3391 4.623932 TCTGCTCAACTTGGTCATAACT 57.376 40.909 0.00 0.00 0.00 2.24
3196 3392 4.569943 TCTGCTCAACTTGGTCATAACTC 58.430 43.478 0.00 0.00 0.00 3.01
3197 3393 4.040339 TCTGCTCAACTTGGTCATAACTCA 59.960 41.667 0.00 0.00 0.00 3.41
3208 3404 6.048732 TGGTCATAACTCATAAACAGCTGA 57.951 37.500 23.35 0.00 0.00 4.26
3228 3424 8.348507 CAGCTGATAAATTCCTTTTTAGCTAGG 58.651 37.037 8.42 0.00 36.54 3.02
3242 3438 6.818281 TTTAGCTAGGCTTACCCAAAGATA 57.182 37.500 0.00 0.00 40.44 1.98
3283 3507 4.083581 ACACGCATTATTTCAGCTGAAC 57.916 40.909 28.46 14.71 33.13 3.18
3319 3544 4.215399 TGTGTACTGTTTTTATCCAGCTGC 59.785 41.667 8.66 0.00 31.76 5.25
3406 3658 1.358759 CAAACAGTGTGGAACCGGC 59.641 57.895 0.00 0.00 34.36 6.13
3438 3690 0.834687 AGACCTTTGGCCCGACAGTA 60.835 55.000 0.00 0.00 0.00 2.74
3443 3695 2.432444 CTTTGGCCCGACAGTATCAAA 58.568 47.619 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.490509 TCGTATCCGGGTGCTATACATG 59.509 50.000 0.00 0.00 33.95 3.21
1 2 2.490903 GTCGTATCCGGGTGCTATACAT 59.509 50.000 0.00 0.00 33.95 2.29
2 3 1.881973 GTCGTATCCGGGTGCTATACA 59.118 52.381 0.00 0.00 33.95 2.29
3 4 1.200948 GGTCGTATCCGGGTGCTATAC 59.799 57.143 0.00 0.34 33.95 1.47
5 6 0.178970 AGGTCGTATCCGGGTGCTAT 60.179 55.000 0.00 0.00 33.95 2.97
6 7 1.105167 CAGGTCGTATCCGGGTGCTA 61.105 60.000 0.00 0.00 33.95 3.49
7 8 2.043248 AGGTCGTATCCGGGTGCT 60.043 61.111 0.00 0.00 33.95 4.40
8 9 2.106332 CAGGTCGTATCCGGGTGC 59.894 66.667 0.00 0.00 33.95 5.01
9 10 2.106332 GCAGGTCGTATCCGGGTG 59.894 66.667 0.00 0.00 33.95 4.61
10 11 1.985662 TTGCAGGTCGTATCCGGGT 60.986 57.895 0.00 0.00 33.95 5.28
11 12 1.520787 GTTGCAGGTCGTATCCGGG 60.521 63.158 0.00 0.00 33.95 5.73
12 13 0.527817 GAGTTGCAGGTCGTATCCGG 60.528 60.000 0.00 0.00 33.95 5.14
13 14 0.527817 GGAGTTGCAGGTCGTATCCG 60.528 60.000 0.00 0.00 0.00 4.18
14 15 0.824759 AGGAGTTGCAGGTCGTATCC 59.175 55.000 0.00 0.00 0.00 2.59
15 16 1.202428 GGAGGAGTTGCAGGTCGTATC 60.202 57.143 0.00 0.00 0.00 2.24
16 17 0.824759 GGAGGAGTTGCAGGTCGTAT 59.175 55.000 0.00 0.00 0.00 3.06
17 18 1.592400 CGGAGGAGTTGCAGGTCGTA 61.592 60.000 0.00 0.00 0.00 3.43
18 19 2.932234 CGGAGGAGTTGCAGGTCGT 61.932 63.158 0.00 0.00 0.00 4.34
19 20 2.125912 CGGAGGAGTTGCAGGTCG 60.126 66.667 0.00 0.00 0.00 4.79
20 21 0.606604 TAACGGAGGAGTTGCAGGTC 59.393 55.000 0.00 0.00 35.70 3.85
21 22 0.608640 CTAACGGAGGAGTTGCAGGT 59.391 55.000 0.00 0.00 35.70 4.00
22 23 0.608640 ACTAACGGAGGAGTTGCAGG 59.391 55.000 0.00 0.00 35.70 4.85
23 24 2.735762 GCTACTAACGGAGGAGTTGCAG 60.736 54.545 4.05 0.00 42.34 4.41
24 25 1.203994 GCTACTAACGGAGGAGTTGCA 59.796 52.381 4.05 0.00 42.34 4.08
25 26 1.477295 AGCTACTAACGGAGGAGTTGC 59.523 52.381 1.25 4.24 42.79 4.17
26 27 3.056749 ACAAGCTACTAACGGAGGAGTTG 60.057 47.826 0.00 6.64 38.58 3.16
27 28 3.163467 ACAAGCTACTAACGGAGGAGTT 58.837 45.455 0.00 0.00 38.58 3.01
28 29 2.754002 GACAAGCTACTAACGGAGGAGT 59.246 50.000 0.00 0.00 38.58 3.85
29 30 3.018149 AGACAAGCTACTAACGGAGGAG 58.982 50.000 0.00 0.00 39.48 3.69
30 31 2.753452 CAGACAAGCTACTAACGGAGGA 59.247 50.000 0.00 0.00 0.00 3.71
31 32 2.735762 GCAGACAAGCTACTAACGGAGG 60.736 54.545 0.00 0.00 0.00 4.30
32 33 2.094700 TGCAGACAAGCTACTAACGGAG 60.095 50.000 0.00 0.00 34.99 4.63
33 34 1.890489 TGCAGACAAGCTACTAACGGA 59.110 47.619 0.00 0.00 34.99 4.69
34 35 2.363788 TGCAGACAAGCTACTAACGG 57.636 50.000 0.00 0.00 34.99 4.44
35 36 3.980238 CTTGCAGACAAGCTACTAACG 57.020 47.619 0.00 0.00 46.38 3.18
45 46 0.815213 AGCGCTTCACTTGCAGACAA 60.815 50.000 2.64 0.00 0.00 3.18
46 47 0.815213 AAGCGCTTCACTTGCAGACA 60.815 50.000 18.98 0.00 0.00 3.41
47 48 0.308993 AAAGCGCTTCACTTGCAGAC 59.691 50.000 25.24 0.00 0.00 3.51
48 49 1.024271 AAAAGCGCTTCACTTGCAGA 58.976 45.000 25.24 0.00 0.00 4.26
49 50 1.126079 CAAAAGCGCTTCACTTGCAG 58.874 50.000 25.24 3.58 0.00 4.41
50 51 0.871163 GCAAAAGCGCTTCACTTGCA 60.871 50.000 35.66 0.00 41.55 4.08
51 52 0.595825 AGCAAAAGCGCTTCACTTGC 60.596 50.000 34.60 34.60 39.99 4.01
52 53 1.002033 AGAGCAAAAGCGCTTCACTTG 60.002 47.619 25.24 23.72 44.01 3.16
53 54 1.265365 GAGAGCAAAAGCGCTTCACTT 59.735 47.619 25.24 11.74 44.01 3.16
54 55 0.871057 GAGAGCAAAAGCGCTTCACT 59.129 50.000 25.24 20.15 44.01 3.41
55 56 0.588252 TGAGAGCAAAAGCGCTTCAC 59.412 50.000 25.24 15.57 44.01 3.18
56 57 1.466167 GATGAGAGCAAAAGCGCTTCA 59.534 47.619 25.24 15.80 44.01 3.02
57 58 1.202121 GGATGAGAGCAAAAGCGCTTC 60.202 52.381 25.24 10.88 44.01 3.86
58 59 0.807496 GGATGAGAGCAAAAGCGCTT 59.193 50.000 18.98 18.98 44.01 4.68
60 61 1.308069 TGGGATGAGAGCAAAAGCGC 61.308 55.000 0.00 0.00 0.00 5.92
61 62 1.135575 GTTGGGATGAGAGCAAAAGCG 60.136 52.381 0.00 0.00 0.00 4.68
62 63 1.203287 GGTTGGGATGAGAGCAAAAGC 59.797 52.381 0.00 0.00 0.00 3.51
63 64 2.517959 TGGTTGGGATGAGAGCAAAAG 58.482 47.619 0.00 0.00 0.00 2.27
64 65 2.673775 TGGTTGGGATGAGAGCAAAA 57.326 45.000 0.00 0.00 0.00 2.44
65 66 2.905415 ATGGTTGGGATGAGAGCAAA 57.095 45.000 0.00 0.00 0.00 3.68
66 67 2.905415 AATGGTTGGGATGAGAGCAA 57.095 45.000 0.00 0.00 0.00 3.91
67 68 2.419990 CGTAATGGTTGGGATGAGAGCA 60.420 50.000 0.00 0.00 0.00 4.26
68 69 2.213499 CGTAATGGTTGGGATGAGAGC 58.787 52.381 0.00 0.00 0.00 4.09
69 70 2.485479 CCCGTAATGGTTGGGATGAGAG 60.485 54.545 0.00 0.00 46.41 3.20
70 71 1.488812 CCCGTAATGGTTGGGATGAGA 59.511 52.381 0.00 0.00 46.41 3.27
71 72 1.476833 CCCCGTAATGGTTGGGATGAG 60.477 57.143 0.00 0.00 46.41 2.90
72 73 0.548989 CCCCGTAATGGTTGGGATGA 59.451 55.000 0.00 0.00 46.41 2.92
73 74 0.467290 CCCCCGTAATGGTTGGGATG 60.467 60.000 0.00 0.00 46.41 3.51
74 75 0.625091 TCCCCCGTAATGGTTGGGAT 60.625 55.000 0.00 0.00 46.41 3.85
75 76 1.229886 TCCCCCGTAATGGTTGGGA 60.230 57.895 0.00 0.00 46.41 4.37
76 77 1.077285 GTCCCCCGTAATGGTTGGG 60.077 63.158 0.00 0.00 39.88 4.12
77 78 0.038455 TTGTCCCCCGTAATGGTTGG 59.962 55.000 0.00 0.00 35.15 3.77
78 79 1.912417 TTTGTCCCCCGTAATGGTTG 58.088 50.000 0.00 0.00 35.15 3.77
79 80 2.629137 GTTTTTGTCCCCCGTAATGGTT 59.371 45.455 0.00 0.00 35.15 3.67
80 81 2.241160 GTTTTTGTCCCCCGTAATGGT 58.759 47.619 0.00 0.00 35.15 3.55
81 82 2.230266 CTGTTTTTGTCCCCCGTAATGG 59.770 50.000 0.00 0.00 37.55 3.16
82 83 2.888414 ACTGTTTTTGTCCCCCGTAATG 59.112 45.455 0.00 0.00 0.00 1.90
83 84 3.232720 ACTGTTTTTGTCCCCCGTAAT 57.767 42.857 0.00 0.00 0.00 1.89
84 85 2.732844 ACTGTTTTTGTCCCCCGTAA 57.267 45.000 0.00 0.00 0.00 3.18
85 86 2.732844 AACTGTTTTTGTCCCCCGTA 57.267 45.000 0.00 0.00 0.00 4.02
86 87 1.752498 GAAACTGTTTTTGTCCCCCGT 59.248 47.619 7.28 0.00 0.00 5.28
87 88 1.751924 TGAAACTGTTTTTGTCCCCCG 59.248 47.619 7.28 0.00 0.00 5.73
88 89 3.133901 ACATGAAACTGTTTTTGTCCCCC 59.866 43.478 7.28 0.00 0.00 5.40
89 90 4.400529 ACATGAAACTGTTTTTGTCCCC 57.599 40.909 7.28 0.00 0.00 4.81
90 91 4.973663 CGTACATGAAACTGTTTTTGTCCC 59.026 41.667 19.46 13.35 0.00 4.46
91 92 4.439776 GCGTACATGAAACTGTTTTTGTCC 59.560 41.667 19.46 11.78 0.00 4.02
92 93 5.031578 TGCGTACATGAAACTGTTTTTGTC 58.968 37.500 19.46 13.14 0.00 3.18
93 94 4.987832 TGCGTACATGAAACTGTTTTTGT 58.012 34.783 19.67 19.67 0.00 2.83
94 95 5.270083 TCTGCGTACATGAAACTGTTTTTG 58.730 37.500 7.28 10.62 0.00 2.44
95 96 5.493133 TCTGCGTACATGAAACTGTTTTT 57.507 34.783 7.28 0.00 0.00 1.94
96 97 5.689383 ATCTGCGTACATGAAACTGTTTT 57.311 34.783 7.28 0.00 0.00 2.43
97 98 6.426937 AGTTATCTGCGTACATGAAACTGTTT 59.573 34.615 5.29 5.29 0.00 2.83
98 99 5.932303 AGTTATCTGCGTACATGAAACTGTT 59.068 36.000 0.00 0.00 0.00 3.16
99 100 5.479306 AGTTATCTGCGTACATGAAACTGT 58.521 37.500 0.00 0.00 0.00 3.55
100 101 5.005779 GGAGTTATCTGCGTACATGAAACTG 59.994 44.000 0.00 0.00 0.00 3.16
101 102 5.105310 AGGAGTTATCTGCGTACATGAAACT 60.105 40.000 0.00 0.00 37.11 2.66
102 103 5.109903 AGGAGTTATCTGCGTACATGAAAC 58.890 41.667 0.00 0.00 37.11 2.78
103 104 5.339008 AGGAGTTATCTGCGTACATGAAA 57.661 39.130 0.00 0.00 37.11 2.69
104 105 5.593095 ACTAGGAGTTATCTGCGTACATGAA 59.407 40.000 0.00 0.00 37.11 2.57
105 106 5.131067 ACTAGGAGTTATCTGCGTACATGA 58.869 41.667 0.00 0.00 37.11 3.07
106 107 5.440234 ACTAGGAGTTATCTGCGTACATG 57.560 43.478 0.00 0.00 37.11 3.21
107 108 6.466885 AAACTAGGAGTTATCTGCGTACAT 57.533 37.500 0.00 0.00 37.47 2.29
108 109 5.448225 CGAAACTAGGAGTTATCTGCGTACA 60.448 44.000 0.00 0.00 37.47 2.90
109 110 4.968788 CGAAACTAGGAGTTATCTGCGTAC 59.031 45.833 0.00 0.00 37.47 3.67
110 111 4.637534 ACGAAACTAGGAGTTATCTGCGTA 59.362 41.667 0.00 0.00 37.47 4.42
111 112 3.442977 ACGAAACTAGGAGTTATCTGCGT 59.557 43.478 0.00 0.00 37.47 5.24
112 113 4.030134 ACGAAACTAGGAGTTATCTGCG 57.970 45.455 0.00 0.00 37.47 5.18
113 114 4.036352 CGACGAAACTAGGAGTTATCTGC 58.964 47.826 0.00 0.00 37.47 4.26
114 115 5.163784 TGACGACGAAACTAGGAGTTATCTG 60.164 44.000 0.00 0.00 37.47 2.90
115 116 4.940046 TGACGACGAAACTAGGAGTTATCT 59.060 41.667 0.00 0.00 37.47 1.98
116 117 5.227238 TGACGACGAAACTAGGAGTTATC 57.773 43.478 0.00 0.00 37.47 1.75
117 118 5.831702 ATGACGACGAAACTAGGAGTTAT 57.168 39.130 0.00 0.00 37.47 1.89
118 119 5.643348 TGTATGACGACGAAACTAGGAGTTA 59.357 40.000 0.00 0.00 37.47 2.24
119 120 4.456911 TGTATGACGACGAAACTAGGAGTT 59.543 41.667 0.00 0.00 40.80 3.01
120 121 4.005650 TGTATGACGACGAAACTAGGAGT 58.994 43.478 0.00 0.00 0.00 3.85
121 122 4.611310 TGTATGACGACGAAACTAGGAG 57.389 45.455 0.00 0.00 0.00 3.69
122 123 4.456911 ACTTGTATGACGACGAAACTAGGA 59.543 41.667 0.00 0.00 0.00 2.94
123 124 4.730657 ACTTGTATGACGACGAAACTAGG 58.269 43.478 0.00 0.00 0.00 3.02
124 125 5.628193 ACAACTTGTATGACGACGAAACTAG 59.372 40.000 0.00 3.12 0.00 2.57
125 126 5.400188 CACAACTTGTATGACGACGAAACTA 59.600 40.000 0.00 0.00 0.00 2.24
126 127 4.208460 CACAACTTGTATGACGACGAAACT 59.792 41.667 0.00 0.00 0.00 2.66
127 128 4.026310 ACACAACTTGTATGACGACGAAAC 60.026 41.667 0.00 0.00 36.32 2.78
128 129 4.114073 ACACAACTTGTATGACGACGAAA 58.886 39.130 0.00 0.00 36.32 3.46
129 130 3.708890 ACACAACTTGTATGACGACGAA 58.291 40.909 0.00 0.00 36.32 3.85
130 131 3.243134 TGACACAACTTGTATGACGACGA 60.243 43.478 0.00 0.00 39.17 4.20
131 132 3.047093 TGACACAACTTGTATGACGACG 58.953 45.455 0.00 0.00 39.17 5.12
132 133 5.862323 AGTATGACACAACTTGTATGACGAC 59.138 40.000 0.00 0.00 39.17 4.34
133 134 6.020971 AGTATGACACAACTTGTATGACGA 57.979 37.500 0.00 0.00 39.17 4.20
134 135 6.183360 GGAAGTATGACACAACTTGTATGACG 60.183 42.308 9.21 0.00 39.17 4.35
135 136 6.874134 AGGAAGTATGACACAACTTGTATGAC 59.126 38.462 9.21 0.00 39.17 3.06
136 137 7.004555 AGGAAGTATGACACAACTTGTATGA 57.995 36.000 9.21 0.00 39.17 2.15
137 138 6.313905 GGAGGAAGTATGACACAACTTGTATG 59.686 42.308 9.21 0.00 39.17 2.39
138 139 6.407202 GGAGGAAGTATGACACAACTTGTAT 58.593 40.000 9.21 0.00 39.17 2.29
139 140 5.566032 CGGAGGAAGTATGACACAACTTGTA 60.566 44.000 9.21 0.00 39.17 2.41
140 141 4.642429 GGAGGAAGTATGACACAACTTGT 58.358 43.478 9.21 0.00 43.10 3.16
141 142 3.679980 CGGAGGAAGTATGACACAACTTG 59.320 47.826 9.21 0.00 36.10 3.16
142 143 3.323979 ACGGAGGAAGTATGACACAACTT 59.676 43.478 5.01 5.01 38.62 2.66
143 144 2.897969 ACGGAGGAAGTATGACACAACT 59.102 45.455 0.00 0.00 0.00 3.16
144 145 3.251571 GACGGAGGAAGTATGACACAAC 58.748 50.000 0.00 0.00 0.00 3.32
145 146 2.232941 GGACGGAGGAAGTATGACACAA 59.767 50.000 0.00 0.00 0.00 3.33
146 147 1.822990 GGACGGAGGAAGTATGACACA 59.177 52.381 0.00 0.00 0.00 3.72
147 148 1.136500 GGGACGGAGGAAGTATGACAC 59.864 57.143 0.00 0.00 0.00 3.67
148 149 1.272816 TGGGACGGAGGAAGTATGACA 60.273 52.381 0.00 0.00 0.00 3.58
149 150 1.481871 TGGGACGGAGGAAGTATGAC 58.518 55.000 0.00 0.00 0.00 3.06
150 151 2.241281 TTGGGACGGAGGAAGTATGA 57.759 50.000 0.00 0.00 0.00 2.15
151 152 3.343941 TTTTGGGACGGAGGAAGTATG 57.656 47.619 0.00 0.00 0.00 2.39
152 153 5.191124 ACTTATTTTGGGACGGAGGAAGTAT 59.809 40.000 0.00 0.00 0.00 2.12
153 154 4.533311 ACTTATTTTGGGACGGAGGAAGTA 59.467 41.667 0.00 0.00 0.00 2.24
154 155 3.329814 ACTTATTTTGGGACGGAGGAAGT 59.670 43.478 0.00 0.00 0.00 3.01
155 156 3.689649 CACTTATTTTGGGACGGAGGAAG 59.310 47.826 0.00 0.00 0.00 3.46
156 157 3.328343 TCACTTATTTTGGGACGGAGGAA 59.672 43.478 0.00 0.00 0.00 3.36
157 158 2.907696 TCACTTATTTTGGGACGGAGGA 59.092 45.455 0.00 0.00 0.00 3.71
158 159 3.007635 GTCACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
159 160 3.933332 GAGTCACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 33.84 4.63
160 161 3.325425 TGAGTCACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 33.84 4.69
161 162 3.670625 TGAGTCACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 33.84 4.79
162 163 4.755123 AGTTGAGTCACTTATTTTGGGACG 59.245 41.667 0.00 0.00 33.84 4.79
163 164 6.635030 AAGTTGAGTCACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
164 165 6.460953 GCAAAGTTGAGTCACTTATTTTGGGA 60.461 38.462 11.16 0.00 35.87 4.37
165 166 5.691754 GCAAAGTTGAGTCACTTATTTTGGG 59.308 40.000 11.16 0.00 35.87 4.12
166 167 6.198966 GTGCAAAGTTGAGTCACTTATTTTGG 59.801 38.462 11.16 0.00 35.87 3.28
167 168 6.974622 AGTGCAAAGTTGAGTCACTTATTTTG 59.025 34.615 0.00 0.00 35.87 2.44
168 169 7.100458 AGTGCAAAGTTGAGTCACTTATTTT 57.900 32.000 0.00 0.00 35.87 1.82
169 170 6.699575 AGTGCAAAGTTGAGTCACTTATTT 57.300 33.333 0.00 0.00 35.87 1.40
170 171 7.282224 TGTTAGTGCAAAGTTGAGTCACTTATT 59.718 33.333 7.72 0.00 35.87 1.40
171 172 6.765989 TGTTAGTGCAAAGTTGAGTCACTTAT 59.234 34.615 7.72 0.00 35.87 1.73
172 173 6.110033 TGTTAGTGCAAAGTTGAGTCACTTA 58.890 36.000 7.72 0.00 35.87 2.24
173 174 4.941263 TGTTAGTGCAAAGTTGAGTCACTT 59.059 37.500 7.72 0.00 38.74 3.16
174 175 4.513442 TGTTAGTGCAAAGTTGAGTCACT 58.487 39.130 0.00 7.60 40.60 3.41
175 176 4.875544 TGTTAGTGCAAAGTTGAGTCAC 57.124 40.909 0.00 0.00 0.00 3.67
176 177 5.356751 ACAATGTTAGTGCAAAGTTGAGTCA 59.643 36.000 0.00 0.00 0.00 3.41
177 178 5.821204 ACAATGTTAGTGCAAAGTTGAGTC 58.179 37.500 0.00 0.00 0.00 3.36
178 179 5.835113 ACAATGTTAGTGCAAAGTTGAGT 57.165 34.783 0.00 0.00 0.00 3.41
179 180 6.959361 AGTACAATGTTAGTGCAAAGTTGAG 58.041 36.000 0.00 0.00 0.00 3.02
180 181 6.935741 AGTACAATGTTAGTGCAAAGTTGA 57.064 33.333 0.00 0.00 0.00 3.18
181 182 9.169468 CTTTAGTACAATGTTAGTGCAAAGTTG 57.831 33.333 0.00 0.00 0.00 3.16
182 183 8.899771 ACTTTAGTACAATGTTAGTGCAAAGTT 58.100 29.630 0.00 0.00 33.75 2.66
183 184 8.342634 CACTTTAGTACAATGTTAGTGCAAAGT 58.657 33.333 0.00 0.00 35.58 2.66
184 185 8.556194 TCACTTTAGTACAATGTTAGTGCAAAG 58.444 33.333 0.00 0.00 33.40 2.77
185 186 8.439993 TCACTTTAGTACAATGTTAGTGCAAA 57.560 30.769 0.00 0.00 33.40 3.68
186 187 8.439993 TTCACTTTAGTACAATGTTAGTGCAA 57.560 30.769 0.00 0.00 33.40 4.08
187 188 8.503196 CATTCACTTTAGTACAATGTTAGTGCA 58.497 33.333 0.00 0.00 33.40 4.57
188 189 7.481798 GCATTCACTTTAGTACAATGTTAGTGC 59.518 37.037 0.00 3.64 33.41 4.40
189 190 8.503196 TGCATTCACTTTAGTACAATGTTAGTG 58.497 33.333 0.00 0.00 33.41 2.74
190 191 8.615878 TGCATTCACTTTAGTACAATGTTAGT 57.384 30.769 0.00 0.00 33.41 2.24
191 192 9.891828 TTTGCATTCACTTTAGTACAATGTTAG 57.108 29.630 0.00 0.00 33.41 2.34
192 193 9.891828 CTTTGCATTCACTTTAGTACAATGTTA 57.108 29.630 0.00 3.94 33.41 2.41
193 194 8.413229 ACTTTGCATTCACTTTAGTACAATGTT 58.587 29.630 0.00 0.00 33.41 2.71
194 195 7.940850 ACTTTGCATTCACTTTAGTACAATGT 58.059 30.769 0.00 0.00 33.41 2.71
195 196 7.269084 CGACTTTGCATTCACTTTAGTACAATG 59.731 37.037 0.00 8.41 33.73 2.82
196 197 7.172532 TCGACTTTGCATTCACTTTAGTACAAT 59.827 33.333 0.00 0.00 0.00 2.71
197 198 6.480651 TCGACTTTGCATTCACTTTAGTACAA 59.519 34.615 0.00 0.00 0.00 2.41
198 199 5.986741 TCGACTTTGCATTCACTTTAGTACA 59.013 36.000 0.00 0.00 0.00 2.90
199 200 6.145696 ACTCGACTTTGCATTCACTTTAGTAC 59.854 38.462 0.00 0.00 0.00 2.73
200 201 6.220930 ACTCGACTTTGCATTCACTTTAGTA 58.779 36.000 0.00 0.00 0.00 1.82
201 202 5.057149 ACTCGACTTTGCATTCACTTTAGT 58.943 37.500 0.00 0.00 0.00 2.24
202 203 5.177511 TGACTCGACTTTGCATTCACTTTAG 59.822 40.000 0.00 0.00 0.00 1.85
203 204 5.050363 GTGACTCGACTTTGCATTCACTTTA 60.050 40.000 0.00 0.00 31.25 1.85
204 205 3.876914 TGACTCGACTTTGCATTCACTTT 59.123 39.130 0.00 0.00 0.00 2.66
205 206 3.248602 GTGACTCGACTTTGCATTCACTT 59.751 43.478 0.00 0.00 31.25 3.16
206 207 2.802816 GTGACTCGACTTTGCATTCACT 59.197 45.455 0.00 0.00 31.25 3.41
207 208 2.802816 AGTGACTCGACTTTGCATTCAC 59.197 45.455 0.00 0.00 33.57 3.18
208 209 3.111853 AGTGACTCGACTTTGCATTCA 57.888 42.857 0.00 0.00 0.00 2.57
209 210 5.591643 TTAAGTGACTCGACTTTGCATTC 57.408 39.130 0.00 0.00 37.38 2.67
210 211 6.560253 AATTAAGTGACTCGACTTTGCATT 57.440 33.333 0.00 0.00 37.38 3.56
211 212 6.373779 CAAATTAAGTGACTCGACTTTGCAT 58.626 36.000 0.00 0.00 37.38 3.96
212 213 5.277779 CCAAATTAAGTGACTCGACTTTGCA 60.278 40.000 0.00 0.00 37.38 4.08
213 214 5.147162 CCAAATTAAGTGACTCGACTTTGC 58.853 41.667 0.00 0.00 37.38 3.68
214 215 5.468746 TCCCAAATTAAGTGACTCGACTTTG 59.531 40.000 0.00 0.00 37.38 2.77
215 216 5.469084 GTCCCAAATTAAGTGACTCGACTTT 59.531 40.000 0.00 0.00 37.38 2.66
216 217 4.995487 GTCCCAAATTAAGTGACTCGACTT 59.005 41.667 0.00 0.00 39.54 3.01
217 218 4.566987 GTCCCAAATTAAGTGACTCGACT 58.433 43.478 0.00 0.00 0.00 4.18
218 219 3.367025 CGTCCCAAATTAAGTGACTCGAC 59.633 47.826 0.00 0.00 0.00 4.20
219 220 3.581755 CGTCCCAAATTAAGTGACTCGA 58.418 45.455 0.00 0.00 0.00 4.04
220 221 2.671396 CCGTCCCAAATTAAGTGACTCG 59.329 50.000 0.00 0.00 0.00 4.18
221 222 3.933332 CTCCGTCCCAAATTAAGTGACTC 59.067 47.826 0.00 0.00 0.00 3.36
222 223 3.307480 CCTCCGTCCCAAATTAAGTGACT 60.307 47.826 0.00 0.00 0.00 3.41
223 224 3.007635 CCTCCGTCCCAAATTAAGTGAC 58.992 50.000 0.00 0.00 0.00 3.67
224 225 2.026636 CCCTCCGTCCCAAATTAAGTGA 60.027 50.000 0.00 0.00 0.00 3.41
225 226 2.026636 TCCCTCCGTCCCAAATTAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
226 227 2.238898 CTCCCTCCGTCCCAAATTAAGT 59.761 50.000 0.00 0.00 0.00 2.24
227 228 2.238898 ACTCCCTCCGTCCCAAATTAAG 59.761 50.000 0.00 0.00 0.00 1.85
228 229 2.271777 ACTCCCTCCGTCCCAAATTAA 58.728 47.619 0.00 0.00 0.00 1.40
229 230 1.961133 ACTCCCTCCGTCCCAAATTA 58.039 50.000 0.00 0.00 0.00 1.40
230 231 1.558294 GTACTCCCTCCGTCCCAAATT 59.442 52.381 0.00 0.00 0.00 1.82
231 232 1.201424 GTACTCCCTCCGTCCCAAAT 58.799 55.000 0.00 0.00 0.00 2.32
232 233 0.178926 TGTACTCCCTCCGTCCCAAA 60.179 55.000 0.00 0.00 0.00 3.28
233 234 0.178926 TTGTACTCCCTCCGTCCCAA 60.179 55.000 0.00 0.00 0.00 4.12
234 235 0.042131 ATTGTACTCCCTCCGTCCCA 59.958 55.000 0.00 0.00 0.00 4.37
235 236 1.201424 AATTGTACTCCCTCCGTCCC 58.799 55.000 0.00 0.00 0.00 4.46
236 237 3.268330 GAAAATTGTACTCCCTCCGTCC 58.732 50.000 0.00 0.00 0.00 4.79
237 238 3.055312 AGGAAAATTGTACTCCCTCCGTC 60.055 47.826 0.00 0.00 0.00 4.79
238 239 2.910977 AGGAAAATTGTACTCCCTCCGT 59.089 45.455 0.00 0.00 0.00 4.69
239 240 3.629142 AGGAAAATTGTACTCCCTCCG 57.371 47.619 0.00 0.00 0.00 4.63
240 241 5.185249 GGAAAAGGAAAATTGTACTCCCTCC 59.815 44.000 0.00 0.00 0.00 4.30
241 242 5.106277 CGGAAAAGGAAAATTGTACTCCCTC 60.106 44.000 0.00 0.00 0.00 4.30
242 243 4.765339 CGGAAAAGGAAAATTGTACTCCCT 59.235 41.667 0.00 0.00 0.00 4.20
243 244 4.521639 ACGGAAAAGGAAAATTGTACTCCC 59.478 41.667 0.00 0.00 0.00 4.30
244 245 5.700722 ACGGAAAAGGAAAATTGTACTCC 57.299 39.130 0.00 0.00 0.00 3.85
245 246 7.997107 AAAACGGAAAAGGAAAATTGTACTC 57.003 32.000 0.00 0.00 0.00 2.59
246 247 7.201574 GCAAAAACGGAAAAGGAAAATTGTACT 60.202 33.333 0.00 0.00 0.00 2.73
247 248 6.902948 GCAAAAACGGAAAAGGAAAATTGTAC 59.097 34.615 0.00 0.00 0.00 2.90
251 252 4.944317 TGGCAAAAACGGAAAAGGAAAATT 59.056 33.333 0.00 0.00 0.00 1.82
265 267 8.947055 ATGTTTATCTCCAATATGGCAAAAAC 57.053 30.769 0.00 1.69 37.47 2.43
270 272 6.005823 CCTGATGTTTATCTCCAATATGGCA 58.994 40.000 0.00 0.00 37.47 4.92
273 275 8.681486 TTGACCTGATGTTTATCTCCAATATG 57.319 34.615 0.00 0.00 34.31 1.78
276 278 5.591877 GCTTGACCTGATGTTTATCTCCAAT 59.408 40.000 0.00 0.00 34.31 3.16
329 331 6.574350 AGTTCTGTATTTAATCGGAGACTGG 58.426 40.000 0.00 0.00 42.51 4.00
348 350 5.767665 TGTGGCATATGTTTGTGTTAGTTCT 59.232 36.000 4.29 0.00 0.00 3.01
355 357 5.355071 CAGTCTATGTGGCATATGTTTGTGT 59.645 40.000 7.02 0.00 0.00 3.72
362 364 6.705302 ACCTAATCAGTCTATGTGGCATATG 58.295 40.000 7.02 0.00 0.00 1.78
363 365 6.942163 ACCTAATCAGTCTATGTGGCATAT 57.058 37.500 1.41 1.41 0.00 1.78
364 366 6.554982 AGAACCTAATCAGTCTATGTGGCATA 59.445 38.462 0.00 0.00 0.00 3.14
365 367 5.367937 AGAACCTAATCAGTCTATGTGGCAT 59.632 40.000 0.00 0.00 0.00 4.40
367 369 5.053145 CAGAACCTAATCAGTCTATGTGGC 58.947 45.833 0.00 0.00 0.00 5.01
368 370 6.471233 TCAGAACCTAATCAGTCTATGTGG 57.529 41.667 0.00 0.00 0.00 4.17
369 371 7.776107 TCTTCAGAACCTAATCAGTCTATGTG 58.224 38.462 0.00 0.00 0.00 3.21
370 372 7.962995 TCTTCAGAACCTAATCAGTCTATGT 57.037 36.000 0.00 0.00 0.00 2.29
372 374 8.261522 GGTTTCTTCAGAACCTAATCAGTCTAT 58.738 37.037 0.00 0.00 33.13 1.98
383 393 3.662759 TGGTTGGTTTCTTCAGAACCT 57.337 42.857 7.45 0.00 37.54 3.50
388 398 3.954258 ACTCCTTTGGTTGGTTTCTTCAG 59.046 43.478 0.00 0.00 0.00 3.02
412 422 6.826668 TCAGGGAACATGTATGTAACCTATG 58.173 40.000 15.63 14.44 41.91 2.23
416 426 6.177610 TCTTTCAGGGAACATGTATGTAACC 58.822 40.000 0.00 4.20 40.80 2.85
421 431 5.359009 AGCAATCTTTCAGGGAACATGTATG 59.641 40.000 0.00 0.00 0.00 2.39
436 446 1.203052 CGCCATGGTTCAGCAATCTTT 59.797 47.619 14.67 0.00 0.00 2.52
438 448 0.322816 ACGCCATGGTTCAGCAATCT 60.323 50.000 14.67 0.00 0.00 2.40
449 459 0.964860 TGGGAATCACAACGCCATGG 60.965 55.000 7.63 7.63 0.00 3.66
465 475 3.354948 TTCTTGGTCAGTGATGATGGG 57.645 47.619 0.00 0.00 0.00 4.00
485 495 1.537990 GCAACGATGTGTGCCCTTTTT 60.538 47.619 0.00 0.00 0.00 1.94
499 509 0.884704 GCAACTCAGGAAGGCAACGA 60.885 55.000 0.00 0.00 46.39 3.85
523 536 6.481644 CAGATGAACTTTAGTGGAGAATAGCC 59.518 42.308 0.00 0.00 0.00 3.93
527 540 5.809001 TGCAGATGAACTTTAGTGGAGAAT 58.191 37.500 0.00 0.00 0.00 2.40
559 573 3.208747 AGTTTGACCGTGGAAACTGAT 57.791 42.857 5.26 0.00 40.19 2.90
629 643 7.504924 TTGTCTTTCATTGGACTCGTTTTAT 57.495 32.000 0.00 0.00 34.01 1.40
656 670 7.328249 CGACATGTGCATTTAACTTATTTTGGT 59.672 33.333 1.15 0.00 0.00 3.67
666 682 3.188460 ACAGACCGACATGTGCATTTAAC 59.812 43.478 1.15 0.00 0.00 2.01
673 689 1.225855 TTTCACAGACCGACATGTGC 58.774 50.000 1.15 0.00 45.12 4.57
674 690 4.488126 AATTTTCACAGACCGACATGTG 57.512 40.909 1.15 7.32 46.52 3.21
699 715 8.761689 ACTGCCCAAGAAACATGAAAATATATT 58.238 29.630 0.00 0.00 0.00 1.28
721 737 1.881973 TGAGAATGACAAGCCAACTGC 59.118 47.619 0.00 0.00 41.71 4.40
766 783 4.388577 AGTTATTGCCTTTCCTTGGACT 57.611 40.909 0.00 0.00 0.00 3.85
775 792 6.079712 AGGTCCAGATTAGTTATTGCCTTT 57.920 37.500 0.00 0.00 0.00 3.11
808 825 1.506493 CAAGCACAGCGACTCTTTCT 58.494 50.000 0.00 0.00 0.00 2.52
811 828 1.963338 GGCAAGCACAGCGACTCTT 60.963 57.895 0.00 0.00 0.00 2.85
813 830 2.253758 TTGGCAAGCACAGCGACTC 61.254 57.895 0.00 0.00 0.00 3.36
814 831 2.203195 TTGGCAAGCACAGCGACT 60.203 55.556 0.00 0.00 0.00 4.18
817 834 2.050714 CAGTTGGCAAGCACAGCG 60.051 61.111 0.00 0.00 0.00 5.18
818 835 0.179103 AAACAGTTGGCAAGCACAGC 60.179 50.000 0.00 0.00 0.00 4.40
819 836 1.134753 TCAAACAGTTGGCAAGCACAG 59.865 47.619 0.00 0.00 35.29 3.66
820 837 1.180907 TCAAACAGTTGGCAAGCACA 58.819 45.000 0.00 0.00 35.29 4.57
821 838 2.129607 CATCAAACAGTTGGCAAGCAC 58.870 47.619 0.00 0.00 35.29 4.40
823 840 1.142474 GCATCAAACAGTTGGCAAGC 58.858 50.000 0.00 0.00 35.29 4.01
828 845 2.400399 CAAGCAGCATCAAACAGTTGG 58.600 47.619 0.00 0.00 35.29 3.77
838 855 1.336125 GCCAACTATCCAAGCAGCATC 59.664 52.381 0.00 0.00 0.00 3.91
864 883 1.538047 GGTGGCTGACATGTGACAAT 58.462 50.000 1.15 0.00 0.00 2.71
886 905 4.285807 AGAGATGACTTCGATTCAGACG 57.714 45.455 3.85 0.00 0.00 4.18
908 927 7.823745 TTCTTGGCAAAATAGAAAAGTCTCT 57.176 32.000 0.00 0.00 35.12 3.10
957 981 6.018262 TCGTTCTGTCCAGACAAATTTAACTG 60.018 38.462 13.47 13.47 41.33 3.16
972 996 2.743636 TTGATGAGGTCGTTCTGTCC 57.256 50.000 0.00 0.00 0.00 4.02
1080 1121 4.600062 TCTTCTCTGACTGTGTATGGCTA 58.400 43.478 0.00 0.00 0.00 3.93
1266 1319 0.601046 CGAAGCCTGCACTGTCTTGA 60.601 55.000 0.00 0.00 0.00 3.02
1449 1502 2.401766 GCATCCACCCAGAAGCACG 61.402 63.158 0.00 0.00 30.94 5.34
1605 1670 4.269183 CAACTTTGGCACCACCTATCATA 58.731 43.478 0.00 0.00 40.22 2.15
1758 1823 6.581712 AGCAAACTCAATAACAACCAACATT 58.418 32.000 0.00 0.00 0.00 2.71
2113 2184 6.229936 TCTTATACCCTTGTTCAATACGCT 57.770 37.500 0.00 0.00 0.00 5.07
2258 2338 9.010029 GTTCCTCCTTGATTGAAACATTAACTA 57.990 33.333 0.00 0.00 0.00 2.24
2259 2339 7.039714 GGTTCCTCCTTGATTGAAACATTAACT 60.040 37.037 0.00 0.00 0.00 2.24
2260 2340 7.090808 GGTTCCTCCTTGATTGAAACATTAAC 58.909 38.462 0.00 0.00 0.00 2.01
2303 2386 5.012328 ACTAGGATTTGCTAGAAGTTCCG 57.988 43.478 12.40 0.00 0.00 4.30
2409 2492 2.849942 TCATATGTTTCCGGAGCATGG 58.150 47.619 24.86 18.73 0.00 3.66
2663 2788 7.643569 ATGCCACTGTAAATGATGTTATTCA 57.356 32.000 0.00 0.00 0.00 2.57
2676 2801 3.199071 CCCAGTAGGTAATGCCACTGTAA 59.801 47.826 14.65 0.00 41.04 2.41
2679 2804 1.747206 GCCCAGTAGGTAATGCCACTG 60.747 57.143 10.99 10.99 41.66 3.66
2687 2812 4.880164 ACTGAGAATAGCCCAGTAGGTAA 58.120 43.478 0.00 0.00 39.15 2.85
2735 2895 0.037590 TGGCGCCCAACAGACTTAAT 59.962 50.000 26.77 0.00 0.00 1.40
2756 2933 2.905996 TACTGGCCTGGCAAGGGTG 61.906 63.158 26.32 3.14 44.67 4.61
2757 2934 2.531685 TACTGGCCTGGCAAGGGT 60.532 61.111 26.32 16.75 44.67 4.34
2758 2935 2.044946 GTACTGGCCTGGCAAGGG 60.045 66.667 26.32 12.09 44.67 3.95
2759 2936 2.543067 GAGGTACTGGCCTGGCAAGG 62.543 65.000 26.32 14.47 43.82 3.61
2760 2937 1.078143 GAGGTACTGGCCTGGCAAG 60.078 63.158 21.65 21.65 41.55 4.01
2761 2938 2.602676 GGAGGTACTGGCCTGGCAA 61.603 63.158 22.05 8.66 41.55 4.52
2762 2939 3.009115 GGAGGTACTGGCCTGGCA 61.009 66.667 22.05 3.71 41.55 4.92
2763 2940 3.798511 GGGAGGTACTGGCCTGGC 61.799 72.222 11.05 11.05 41.55 4.85
2764 2941 2.285368 TGGGAGGTACTGGCCTGG 60.285 66.667 14.82 4.64 41.55 4.45
2765 2942 1.488705 TTGTGGGAGGTACTGGCCTG 61.489 60.000 8.29 8.29 41.55 4.85
2811 2988 7.519927 TGTCCTTGGTACCTGTTTTAGTTTAT 58.480 34.615 14.36 0.00 0.00 1.40
2812 2989 6.897986 TGTCCTTGGTACCTGTTTTAGTTTA 58.102 36.000 14.36 0.00 0.00 2.01
2818 2995 5.221165 CGAAATTGTCCTTGGTACCTGTTTT 60.221 40.000 14.36 2.20 0.00 2.43
2827 3004 3.250040 CGTTCTTCGAAATTGTCCTTGGT 59.750 43.478 0.00 0.00 42.86 3.67
2828 3005 3.250040 ACGTTCTTCGAAATTGTCCTTGG 59.750 43.478 0.00 0.00 42.86 3.61
2829 3006 4.468095 ACGTTCTTCGAAATTGTCCTTG 57.532 40.909 0.00 0.00 42.86 3.61
2852 3042 1.662608 CACTAGCCTCGCCGATGAT 59.337 57.895 0.00 0.00 0.00 2.45
2855 3045 3.147595 TGCACTAGCCTCGCCGAT 61.148 61.111 0.00 0.00 41.13 4.18
2885 3075 7.505585 AGTGAGAAATGGTGTTGGAATTAAAGA 59.494 33.333 0.00 0.00 0.00 2.52
2887 3077 7.286546 TGAGTGAGAAATGGTGTTGGAATTAAA 59.713 33.333 0.00 0.00 0.00 1.52
2961 3151 3.066900 GCTCCTAGCTAGAATGTCAACGA 59.933 47.826 22.70 6.38 38.45 3.85
3094 3286 3.439857 AGTGATACATTTGCCCACAGT 57.560 42.857 0.00 0.00 0.00 3.55
3191 3387 9.905713 AGGAATTTATCAGCTGTTTATGAGTTA 57.094 29.630 14.67 0.00 0.00 2.24
3192 3388 8.814038 AGGAATTTATCAGCTGTTTATGAGTT 57.186 30.769 14.67 0.00 0.00 3.01
3193 3389 8.814038 AAGGAATTTATCAGCTGTTTATGAGT 57.186 30.769 14.67 0.00 0.00 3.41
3208 3404 9.132923 GGTAAGCCTAGCTAAAAAGGAATTTAT 57.867 33.333 4.34 0.00 38.25 1.40
3242 3438 1.563879 TCCACGACCATGATTCCCATT 59.436 47.619 0.00 0.00 31.94 3.16
3267 3463 9.234384 GAGAAATGATGTTCAGCTGAAATAATG 57.766 33.333 29.99 0.00 35.58 1.90
3275 3471 4.936411 ACAGAGAGAAATGATGTTCAGCTG 59.064 41.667 7.63 7.63 32.80 4.24
3283 3507 7.664082 AAACAGTACACAGAGAGAAATGATG 57.336 36.000 0.00 0.00 0.00 3.07
3319 3544 7.439157 TCATCTGTATTTCAGTTTCAACCAG 57.561 36.000 0.00 0.00 43.97 4.00
3374 3599 2.554032 ACTGTTTGCTATGGCTGTTGTC 59.446 45.455 1.68 0.00 39.59 3.18
3406 3658 3.189285 CAAAGGTCTTGGCAAAACAGTG 58.811 45.455 5.98 0.00 0.00 3.66
3438 3690 3.442977 GCTGCTCTGGACTTCAATTTGAT 59.557 43.478 0.00 0.00 0.00 2.57
3443 3695 2.617532 GGAAGCTGCTCTGGACTTCAAT 60.618 50.000 1.00 0.00 40.21 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.