Multiple sequence alignment - TraesCS2B01G024600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G024600 chr2B 100.000 2887 0 0 572 3458 11389132 11392018 0.000000e+00 5332.0
1 TraesCS2B01G024600 chr2B 80.438 1508 253 26 999 2484 11907108 11905621 0.000000e+00 1112.0
2 TraesCS2B01G024600 chr2B 100.000 312 0 0 1 312 11388561 11388872 8.320000e-161 577.0
3 TraesCS2B01G024600 chr2B 91.818 110 5 2 2973 3078 11993922 11994031 2.150000e-32 150.0
4 TraesCS2B01G024600 chr2A 93.001 2329 125 19 769 3078 7741392 7743701 0.000000e+00 3363.0
5 TraesCS2B01G024600 chr2A 81.088 1507 244 22 992 2477 8413103 8414589 0.000000e+00 1166.0
6 TraesCS2B01G024600 chr2A 81.907 1028 168 13 1443 2466 8034406 8033393 0.000000e+00 852.0
7 TraesCS2B01G024600 chr2A 95.833 384 10 3 3078 3458 722143700 722144080 1.760000e-172 616.0
8 TraesCS2B01G024600 chr2A 92.147 382 23 5 3078 3458 745109373 745108998 1.830000e-147 532.0
9 TraesCS2B01G024600 chr2A 90.950 221 13 2 574 792 7740854 7741069 1.210000e-74 291.0
10 TraesCS2B01G024600 chr2A 86.434 258 26 5 574 828 7732337 7732588 1.220000e-69 274.0
11 TraesCS2B01G024600 chr2A 94.059 101 6 0 204 304 7740711 7740811 1.660000e-33 154.0
12 TraesCS2B01G024600 chr2A 91.818 110 5 2 2973 3078 8151068 8151177 2.150000e-32 150.0
13 TraesCS2B01G024600 chr2A 86.765 68 3 3 127 194 7740610 7740671 1.720000e-08 71.3
14 TraesCS2B01G024600 chr2D 92.238 1984 123 15 607 2584 8665831 8667789 0.000000e+00 2782.0
15 TraesCS2B01G024600 chr2D 80.362 1492 249 21 992 2460 9008739 9010209 0.000000e+00 1092.0
16 TraesCS2B01G024600 chr2D 77.959 1529 291 25 963 2460 19586978 19588491 0.000000e+00 915.0
17 TraesCS2B01G024600 chr2D 91.753 97 8 0 207 303 8664331 8664427 6.020000e-28 135.0
18 TraesCS2B01G024600 chr2D 91.176 102 6 3 204 304 8665663 8665762 6.020000e-28 135.0
19 TraesCS2B01G024600 chr2D 84.615 117 9 5 2663 2771 8667894 8668009 1.310000e-19 108.0
20 TraesCS2B01G024600 chr3D 81.370 1358 222 13 1121 2460 564053708 564055052 0.000000e+00 1077.0
21 TraesCS2B01G024600 chr3D 90.000 110 7 3 2973 3078 564001410 564001301 4.650000e-29 139.0
22 TraesCS2B01G024600 chrUn 82.041 1019 170 9 1443 2460 335085452 335086458 0.000000e+00 856.0
23 TraesCS2B01G024600 chrUn 82.041 1019 170 9 1443 2460 416897231 416896225 0.000000e+00 856.0
24 TraesCS2B01G024600 chr6B 94.560 386 20 1 3074 3458 9851828 9851443 2.300000e-166 595.0
25 TraesCS2B01G024600 chr4A 94.602 389 14 4 3073 3458 490988458 490988842 2.300000e-166 595.0
26 TraesCS2B01G024600 chr4A 94.792 384 13 4 3078 3458 610270798 610271177 2.970000e-165 592.0
27 TraesCS2B01G024600 chr7A 93.176 381 25 1 3078 3458 567605966 567605587 3.010000e-155 558.0
28 TraesCS2B01G024600 chr7B 89.717 389 33 5 3071 3458 137481765 137482147 1.120000e-134 490.0
29 TraesCS2B01G024600 chr5A 89.791 382 30 5 3078 3458 41952612 41952239 6.710000e-132 481.0
30 TraesCS2B01G024600 chr5D 85.079 382 43 11 3077 3454 289496539 289496168 9.060000e-101 377.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G024600 chr2B 11388561 11392018 3457 False 2954.500 5332 100.00000 1 3458 2 chr2B.!!$F2 3457
1 TraesCS2B01G024600 chr2B 11905621 11907108 1487 True 1112.000 1112 80.43800 999 2484 1 chr2B.!!$R1 1485
2 TraesCS2B01G024600 chr2A 8413103 8414589 1486 False 1166.000 1166 81.08800 992 2477 1 chr2A.!!$F3 1485
3 TraesCS2B01G024600 chr2A 7740610 7743701 3091 False 969.825 3363 91.19375 127 3078 4 chr2A.!!$F5 2951
4 TraesCS2B01G024600 chr2A 8033393 8034406 1013 True 852.000 852 81.90700 1443 2466 1 chr2A.!!$R1 1023
5 TraesCS2B01G024600 chr2D 9008739 9010209 1470 False 1092.000 1092 80.36200 992 2460 1 chr2D.!!$F1 1468
6 TraesCS2B01G024600 chr2D 19586978 19588491 1513 False 915.000 915 77.95900 963 2460 1 chr2D.!!$F2 1497
7 TraesCS2B01G024600 chr2D 8664331 8668009 3678 False 790.000 2782 89.94550 204 2771 4 chr2D.!!$F3 2567
8 TraesCS2B01G024600 chr3D 564053708 564055052 1344 False 1077.000 1077 81.37000 1121 2460 1 chr3D.!!$F1 1339
9 TraesCS2B01G024600 chrUn 335085452 335086458 1006 False 856.000 856 82.04100 1443 2460 1 chrUn.!!$F1 1017
10 TraesCS2B01G024600 chrUn 416896225 416897231 1006 True 856.000 856 82.04100 1443 2460 1 chrUn.!!$R1 1017

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
869 2348 0.249911 AAGTCCCAGTCAACAGTCGC 60.250 55.0 0.0 0.0 0.0 5.19 F
1843 3359 0.813210 GGGCAGAGGAAGCAAGATCG 60.813 60.0 0.0 0.0 0.0 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2433 3952 0.465460 TTGGCACTCCTTGTCGCTTT 60.465 50.0 0.0 0.0 29.36 3.51 R
3232 4819 0.034574 ATGTAATCTTGGGTGCGGCA 60.035 50.0 0.0 0.0 0.00 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 80 9.719355 AAAACCCTGGAAATTACAAATATGTTC 57.281 29.630 0.00 0.00 41.05 3.18
80 81 8.664669 AACCCTGGAAATTACAAATATGTTCT 57.335 30.769 0.00 0.00 41.05 3.01
81 82 8.664669 ACCCTGGAAATTACAAATATGTTCTT 57.335 30.769 0.00 0.00 41.05 2.52
82 83 8.531146 ACCCTGGAAATTACAAATATGTTCTTG 58.469 33.333 0.00 0.00 41.05 3.02
83 84 7.981225 CCCTGGAAATTACAAATATGTTCTTGG 59.019 37.037 0.00 0.00 41.05 3.61
138 139 9.554395 AAAACAAACAGGAGAAAGAAAAGAAAA 57.446 25.926 0.00 0.00 0.00 2.29
143 144 5.163550 ACAGGAGAAAGAAAAGAAAAACCGG 60.164 40.000 0.00 0.00 0.00 5.28
146 147 5.977725 GGAGAAAGAAAAGAAAAACCGGAAG 59.022 40.000 9.46 0.00 0.00 3.46
150 151 8.092068 AGAAAGAAAAGAAAAACCGGAAGAAAA 58.908 29.630 9.46 0.00 0.00 2.29
190 191 5.238650 ACATTCTAGAAACCTCACAAAACCG 59.761 40.000 9.71 0.00 0.00 4.44
194 195 3.562182 AGAAACCTCACAAAACCGGATT 58.438 40.909 9.46 0.00 0.00 3.01
195 196 3.958147 AGAAACCTCACAAAACCGGATTT 59.042 39.130 9.46 6.03 0.00 2.17
198 199 1.336795 CCTCACAAAACCGGATTTGCC 60.337 52.381 30.52 0.00 42.68 4.52
201 202 2.168521 TCACAAAACCGGATTTGCCAAA 59.831 40.909 30.52 14.73 42.68 3.28
280 1411 0.894184 GACTGACTGACTGACCGGGA 60.894 60.000 6.32 0.00 0.00 5.14
304 1435 4.408921 TCTGAAGAAACCAAAGGAGTCAGA 59.591 41.667 0.00 0.00 38.28 3.27
306 1437 3.113260 AGAAACCAAAGGAGTCAGACG 57.887 47.619 0.00 0.00 0.00 4.18
307 1438 2.698797 AGAAACCAAAGGAGTCAGACGA 59.301 45.455 0.00 0.00 0.00 4.20
309 1440 1.705873 ACCAAAGGAGTCAGACGAGT 58.294 50.000 0.00 0.00 0.00 4.18
310 1441 1.614413 ACCAAAGGAGTCAGACGAGTC 59.386 52.381 0.00 0.00 40.39 3.36
311 1442 1.613925 CCAAAGGAGTCAGACGAGTCA 59.386 52.381 5.99 0.00 42.55 3.41
650 1781 6.155910 TCTCCAGTCAAGCTCATCTAGAAAAT 59.844 38.462 0.00 0.00 0.00 1.82
666 1797 8.899887 TCTAGAAAATTCCCAAGAAATTCCAT 57.100 30.769 0.00 0.00 34.68 3.41
699 1830 5.250235 TGCTAGAGTAGAGCACACATAAC 57.750 43.478 0.00 0.00 44.89 1.89
729 1860 0.320374 AATCCAACGAAGGACGAGCA 59.680 50.000 2.83 0.00 45.77 4.26
868 2347 1.068588 TCAAGTCCCAGTCAACAGTCG 59.931 52.381 0.00 0.00 0.00 4.18
869 2348 0.249911 AAGTCCCAGTCAACAGTCGC 60.250 55.000 0.00 0.00 0.00 5.19
870 2349 2.022129 GTCCCAGTCAACAGTCGCG 61.022 63.158 0.00 0.00 0.00 5.87
901 2380 7.135591 TCCCTGAAGAATTTTCACCATTTTT 57.864 32.000 0.00 0.00 0.00 1.94
957 2441 5.817816 CAGCCTAGTTAAATTAGTCCAGTGG 59.182 44.000 1.40 1.40 0.00 4.00
961 2445 3.262405 AGTTAAATTAGTCCAGTGGCCGA 59.738 43.478 3.51 0.00 0.00 5.54
985 2469 1.599542 GCACGCTTACCTCATCAATCC 59.400 52.381 0.00 0.00 0.00 3.01
987 2471 3.535561 CACGCTTACCTCATCAATCCTT 58.464 45.455 0.00 0.00 0.00 3.36
988 2472 3.557595 CACGCTTACCTCATCAATCCTTC 59.442 47.826 0.00 0.00 0.00 3.46
989 2473 3.134458 CGCTTACCTCATCAATCCTTCC 58.866 50.000 0.00 0.00 0.00 3.46
990 2474 3.181461 CGCTTACCTCATCAATCCTTCCT 60.181 47.826 0.00 0.00 0.00 3.36
1331 2818 2.620115 ACTCATTCAACAGCCACTTGTG 59.380 45.455 0.00 0.00 0.00 3.33
1360 2856 2.721167 CGTTCTCGGAGGATGGCCA 61.721 63.158 8.56 8.56 36.29 5.36
1388 2893 1.037579 ACATGCCTCGAGTCGGATGA 61.038 55.000 23.20 0.00 0.00 2.92
1455 2960 3.034635 TGTTATGCTTTTGGGTGGTTGT 58.965 40.909 0.00 0.00 0.00 3.32
1591 3097 1.003839 GGTGGTGATCAGGCAACGA 60.004 57.895 0.00 0.00 46.39 3.85
1708 3214 4.370049 TGTTTTGCACTTGAATGGTGATG 58.630 39.130 0.00 0.00 36.89 3.07
1843 3359 0.813210 GGGCAGAGGAAGCAAGATCG 60.813 60.000 0.00 0.00 0.00 3.69
1928 3444 3.784994 GCTATGTCTTACGACGAGTTGAC 59.215 47.826 0.00 5.09 43.21 3.18
2041 3560 3.006110 CCACGGTACAGAAGGTTCACTTA 59.994 47.826 0.00 0.00 40.21 2.24
2430 3949 2.987125 GGTAGCGCCTTTCCAGGA 59.013 61.111 2.29 0.00 44.19 3.86
2433 3952 0.249398 GTAGCGCCTTTCCAGGAAGA 59.751 55.000 2.29 0.00 44.19 2.87
2470 3989 5.576774 GTGCCAATCTAATTTTCTTTTCGGG 59.423 40.000 0.00 0.00 0.00 5.14
2512 4031 9.862371 ACTCTTGTACTTTTAGATACATGACAG 57.138 33.333 0.00 0.00 33.97 3.51
2580 4099 6.597672 TCAATGTTGTATGTTCTACCATCCAC 59.402 38.462 0.00 0.00 0.00 4.02
2593 4113 0.032813 CATCCACAATTCCCCTGCCT 60.033 55.000 0.00 0.00 0.00 4.75
2595 4115 0.251742 TCCACAATTCCCCTGCCTTG 60.252 55.000 0.00 0.00 0.00 3.61
2636 4157 1.384502 CTCTGGCCCCTGACCCATA 60.385 63.158 0.00 0.00 0.00 2.74
2637 4158 0.769776 CTCTGGCCCCTGACCCATAT 60.770 60.000 0.00 0.00 0.00 1.78
2783 4361 1.742308 TGCCTTGTTAGGGAGGAAGT 58.258 50.000 0.00 0.00 42.25 3.01
2784 4362 1.351017 TGCCTTGTTAGGGAGGAAGTG 59.649 52.381 0.00 0.00 42.25 3.16
2793 4371 1.132689 AGGGAGGAAGTGACAAGGAGT 60.133 52.381 0.00 0.00 0.00 3.85
2828 4409 4.970662 TTTTCAGAGCTCACATATTGCC 57.029 40.909 17.77 0.00 0.00 4.52
2830 4411 3.851458 TCAGAGCTCACATATTGCCAT 57.149 42.857 17.77 0.00 0.00 4.40
2831 4412 4.961438 TCAGAGCTCACATATTGCCATA 57.039 40.909 17.77 0.00 0.00 2.74
2834 4415 5.061853 CAGAGCTCACATATTGCCATACTT 58.938 41.667 17.77 0.00 0.00 2.24
2837 4418 5.928976 AGCTCACATATTGCCATACTTGTA 58.071 37.500 0.00 0.00 0.00 2.41
2838 4419 5.760253 AGCTCACATATTGCCATACTTGTAC 59.240 40.000 0.00 0.00 0.00 2.90
2840 4421 6.260936 GCTCACATATTGCCATACTTGTACTT 59.739 38.462 0.00 0.00 0.00 2.24
2841 4422 7.201732 GCTCACATATTGCCATACTTGTACTTT 60.202 37.037 0.00 0.00 0.00 2.66
2881 4464 0.968405 GTGTTTGTGTGGCCATGGAT 59.032 50.000 18.40 0.00 0.00 3.41
2923 4506 4.633565 GTCAACTCAATGTTCTGGAGATCC 59.366 45.833 0.00 0.00 36.63 3.36
2966 4549 8.927411 TGTACTATCAGATCAAATGAATCCTGA 58.073 33.333 12.58 12.58 35.34 3.86
3010 4593 4.445452 ACATCATCTTGCACCATTGAAC 57.555 40.909 0.00 0.00 0.00 3.18
3021 4604 3.242870 GCACCATTGAACGAATCCTGATC 60.243 47.826 0.00 0.00 0.00 2.92
3022 4605 3.313526 CACCATTGAACGAATCCTGATCC 59.686 47.826 0.00 0.00 0.00 3.36
3025 4608 5.163205 ACCATTGAACGAATCCTGATCCATA 60.163 40.000 0.00 0.00 0.00 2.74
3029 4612 6.286240 TGAACGAATCCTGATCCATATAGG 57.714 41.667 0.00 0.00 39.47 2.57
3046 4630 9.225682 TCCATATAGGAAGGTGAGAAAACTAAT 57.774 33.333 0.00 0.00 45.65 1.73
3078 4665 8.560576 AAGAAACGAATATTTGTTCAAGTGTG 57.439 30.769 19.23 0.00 33.76 3.82
3079 4666 7.925993 AGAAACGAATATTTGTTCAAGTGTGA 58.074 30.769 19.23 0.00 33.76 3.58
3080 4667 8.402472 AGAAACGAATATTTGTTCAAGTGTGAA 58.598 29.630 19.23 0.00 41.57 3.18
3081 4668 8.918961 AAACGAATATTTGTTCAAGTGTGAAA 57.081 26.923 19.23 0.00 45.29 2.69
3082 4669 8.560576 AACGAATATTTGTTCAAGTGTGAAAG 57.439 30.769 14.31 0.00 45.29 2.62
3083 4670 7.925993 ACGAATATTTGTTCAAGTGTGAAAGA 58.074 30.769 2.21 0.00 45.29 2.52
3084 4671 8.402472 ACGAATATTTGTTCAAGTGTGAAAGAA 58.598 29.630 2.21 0.00 45.29 2.52
3085 4672 9.232082 CGAATATTTGTTCAAGTGTGAAAGAAA 57.768 29.630 0.00 0.00 45.29 2.52
3088 4675 9.956720 ATATTTGTTCAAGTGTGAAAGAAAGAG 57.043 29.630 0.00 0.00 45.29 2.85
3089 4676 7.447374 TTTGTTCAAGTGTGAAAGAAAGAGA 57.553 32.000 0.00 0.00 45.29 3.10
3090 4677 7.447374 TTGTTCAAGTGTGAAAGAAAGAGAA 57.553 32.000 0.00 0.00 45.29 2.87
3091 4678 7.630242 TGTTCAAGTGTGAAAGAAAGAGAAT 57.370 32.000 0.00 0.00 45.29 2.40
3092 4679 8.055279 TGTTCAAGTGTGAAAGAAAGAGAATT 57.945 30.769 0.00 0.00 45.29 2.17
3093 4680 7.970061 TGTTCAAGTGTGAAAGAAAGAGAATTG 59.030 33.333 0.00 0.00 45.29 2.32
3094 4681 7.630242 TCAAGTGTGAAAGAAAGAGAATTGT 57.370 32.000 0.00 0.00 0.00 2.71
3095 4682 7.475015 TCAAGTGTGAAAGAAAGAGAATTGTG 58.525 34.615 0.00 0.00 0.00 3.33
3096 4683 6.382869 AGTGTGAAAGAAAGAGAATTGTGG 57.617 37.500 0.00 0.00 0.00 4.17
3097 4684 6.122277 AGTGTGAAAGAAAGAGAATTGTGGA 58.878 36.000 0.00 0.00 0.00 4.02
3098 4685 6.603201 AGTGTGAAAGAAAGAGAATTGTGGAA 59.397 34.615 0.00 0.00 0.00 3.53
3099 4686 6.914757 GTGTGAAAGAAAGAGAATTGTGGAAG 59.085 38.462 0.00 0.00 0.00 3.46
3100 4687 5.917447 GTGAAAGAAAGAGAATTGTGGAAGC 59.083 40.000 0.00 0.00 0.00 3.86
3101 4688 4.756084 AAGAAAGAGAATTGTGGAAGCG 57.244 40.909 0.00 0.00 0.00 4.68
3102 4689 3.744660 AGAAAGAGAATTGTGGAAGCGT 58.255 40.909 0.00 0.00 0.00 5.07
3103 4690 4.894784 AGAAAGAGAATTGTGGAAGCGTA 58.105 39.130 0.00 0.00 0.00 4.42
3104 4691 5.491982 AGAAAGAGAATTGTGGAAGCGTAT 58.508 37.500 0.00 0.00 0.00 3.06
3105 4692 5.352569 AGAAAGAGAATTGTGGAAGCGTATG 59.647 40.000 0.00 0.00 0.00 2.39
3106 4693 2.939103 AGAGAATTGTGGAAGCGTATGC 59.061 45.455 0.00 0.00 43.24 3.14
3116 4703 2.703409 GCGTATGCTGTTCGGCAG 59.297 61.111 11.89 3.99 45.75 4.85
3117 4704 2.813179 GCGTATGCTGTTCGGCAGG 61.813 63.158 11.89 5.39 45.75 4.85
3118 4705 2.173669 CGTATGCTGTTCGGCAGGG 61.174 63.158 11.89 0.74 45.75 4.45
3119 4706 1.220749 GTATGCTGTTCGGCAGGGA 59.779 57.895 11.89 0.00 45.75 4.20
3120 4707 1.090052 GTATGCTGTTCGGCAGGGAC 61.090 60.000 11.89 6.44 45.75 4.46
3121 4708 2.572095 TATGCTGTTCGGCAGGGACG 62.572 60.000 11.89 0.00 45.75 4.79
3142 4729 4.521010 CGCGTTCGTGTTATATAGAGACA 58.479 43.478 0.00 0.00 0.00 3.41
3143 4730 5.145059 CGCGTTCGTGTTATATAGAGACAT 58.855 41.667 0.00 0.00 0.00 3.06
3144 4731 5.280911 CGCGTTCGTGTTATATAGAGACATC 59.719 44.000 0.00 0.00 0.00 3.06
3145 4732 6.140786 GCGTTCGTGTTATATAGAGACATCA 58.859 40.000 0.00 0.00 0.00 3.07
3146 4733 6.303496 GCGTTCGTGTTATATAGAGACATCAG 59.697 42.308 0.00 0.00 0.00 2.90
3147 4734 7.573627 CGTTCGTGTTATATAGAGACATCAGA 58.426 38.462 0.00 0.00 0.00 3.27
3148 4735 8.231161 CGTTCGTGTTATATAGAGACATCAGAT 58.769 37.037 0.00 0.00 0.00 2.90
3149 4736 9.900710 GTTCGTGTTATATAGAGACATCAGATT 57.099 33.333 0.00 0.00 0.00 2.40
3160 4747 9.821240 ATAGAGACATCAGATTACAAGATAGGT 57.179 33.333 0.00 0.00 0.00 3.08
3161 4748 8.546083 AGAGACATCAGATTACAAGATAGGTT 57.454 34.615 0.00 0.00 0.00 3.50
3162 4749 8.420222 AGAGACATCAGATTACAAGATAGGTTG 58.580 37.037 0.00 0.00 0.00 3.77
3163 4750 6.989169 AGACATCAGATTACAAGATAGGTTGC 59.011 38.462 0.00 0.00 0.00 4.17
3164 4751 5.755375 ACATCAGATTACAAGATAGGTTGCG 59.245 40.000 0.00 0.00 0.00 4.85
3165 4752 4.119862 TCAGATTACAAGATAGGTTGCGC 58.880 43.478 0.00 0.00 0.00 6.09
3166 4753 3.871006 CAGATTACAAGATAGGTTGCGCA 59.129 43.478 5.66 5.66 0.00 6.09
3167 4754 4.025396 CAGATTACAAGATAGGTTGCGCAG 60.025 45.833 11.31 0.00 0.00 5.18
3168 4755 2.309528 TACAAGATAGGTTGCGCAGG 57.690 50.000 11.31 0.00 0.00 4.85
3169 4756 0.324943 ACAAGATAGGTTGCGCAGGT 59.675 50.000 11.31 1.28 0.00 4.00
3170 4757 1.271379 ACAAGATAGGTTGCGCAGGTT 60.271 47.619 11.31 2.19 0.00 3.50
3171 4758 1.131126 CAAGATAGGTTGCGCAGGTTG 59.869 52.381 11.31 4.26 0.00 3.77
3172 4759 0.324943 AGATAGGTTGCGCAGGTTGT 59.675 50.000 11.31 0.00 0.00 3.32
3173 4760 1.165270 GATAGGTTGCGCAGGTTGTT 58.835 50.000 11.31 0.00 0.00 2.83
3174 4761 2.027561 AGATAGGTTGCGCAGGTTGTTA 60.028 45.455 11.31 0.00 0.00 2.41
3175 4762 1.515081 TAGGTTGCGCAGGTTGTTAC 58.485 50.000 11.31 3.49 0.00 2.50
3176 4763 0.179029 AGGTTGCGCAGGTTGTTACT 60.179 50.000 11.31 0.00 0.00 2.24
3177 4764 1.071071 AGGTTGCGCAGGTTGTTACTA 59.929 47.619 11.31 0.00 0.00 1.82
3178 4765 1.463444 GGTTGCGCAGGTTGTTACTAG 59.537 52.381 11.31 0.00 0.00 2.57
3179 4766 2.409975 GTTGCGCAGGTTGTTACTAGA 58.590 47.619 11.31 0.00 0.00 2.43
3180 4767 2.074547 TGCGCAGGTTGTTACTAGAC 57.925 50.000 5.66 0.00 0.00 2.59
3181 4768 1.616865 TGCGCAGGTTGTTACTAGACT 59.383 47.619 5.66 0.00 0.00 3.24
3182 4769 2.036733 TGCGCAGGTTGTTACTAGACTT 59.963 45.455 5.66 0.00 0.00 3.01
3183 4770 2.412089 GCGCAGGTTGTTACTAGACTTG 59.588 50.000 0.30 0.00 0.00 3.16
3184 4771 2.993899 CGCAGGTTGTTACTAGACTTGG 59.006 50.000 0.00 0.00 0.00 3.61
3185 4772 2.742589 GCAGGTTGTTACTAGACTTGGC 59.257 50.000 0.00 0.00 0.00 4.52
3186 4773 3.335579 CAGGTTGTTACTAGACTTGGCC 58.664 50.000 0.00 0.00 0.00 5.36
3187 4774 3.008049 CAGGTTGTTACTAGACTTGGCCT 59.992 47.826 3.32 0.00 0.00 5.19
3188 4775 3.261137 AGGTTGTTACTAGACTTGGCCTC 59.739 47.826 3.32 0.00 0.00 4.70
3189 4776 3.261137 GGTTGTTACTAGACTTGGCCTCT 59.739 47.826 3.32 0.25 0.00 3.69
3190 4777 4.465305 GGTTGTTACTAGACTTGGCCTCTA 59.535 45.833 3.32 1.69 0.00 2.43
3191 4778 5.409211 GTTGTTACTAGACTTGGCCTCTAC 58.591 45.833 3.32 0.00 0.00 2.59
3192 4779 4.931914 TGTTACTAGACTTGGCCTCTACT 58.068 43.478 3.32 1.11 0.00 2.57
3193 4780 4.948621 TGTTACTAGACTTGGCCTCTACTC 59.051 45.833 3.32 0.00 0.00 2.59
3194 4781 3.021177 ACTAGACTTGGCCTCTACTCC 57.979 52.381 3.32 0.00 0.00 3.85
3195 4782 2.312140 ACTAGACTTGGCCTCTACTCCA 59.688 50.000 3.32 0.00 0.00 3.86
3196 4783 2.327325 AGACTTGGCCTCTACTCCAA 57.673 50.000 3.32 0.00 39.81 3.53
3199 4786 3.088923 TTGGCCTCTACTCCAAGCT 57.911 52.632 3.32 0.00 37.43 3.74
3200 4787 2.247699 TTGGCCTCTACTCCAAGCTA 57.752 50.000 3.32 0.00 37.43 3.32
3201 4788 2.478872 TGGCCTCTACTCCAAGCTAT 57.521 50.000 3.32 0.00 0.00 2.97
3202 4789 3.612795 TGGCCTCTACTCCAAGCTATA 57.387 47.619 3.32 0.00 0.00 1.31
3203 4790 3.231818 TGGCCTCTACTCCAAGCTATAC 58.768 50.000 3.32 0.00 0.00 1.47
3204 4791 3.231818 GGCCTCTACTCCAAGCTATACA 58.768 50.000 0.00 0.00 0.00 2.29
3205 4792 3.641906 GGCCTCTACTCCAAGCTATACAA 59.358 47.826 0.00 0.00 0.00 2.41
3206 4793 4.101119 GGCCTCTACTCCAAGCTATACAAA 59.899 45.833 0.00 0.00 0.00 2.83
3207 4794 5.293560 GCCTCTACTCCAAGCTATACAAAG 58.706 45.833 0.00 0.00 0.00 2.77
3208 4795 5.069251 GCCTCTACTCCAAGCTATACAAAGA 59.931 44.000 0.00 0.00 0.00 2.52
3209 4796 6.239458 GCCTCTACTCCAAGCTATACAAAGAT 60.239 42.308 0.00 0.00 0.00 2.40
3210 4797 7.039644 GCCTCTACTCCAAGCTATACAAAGATA 60.040 40.741 0.00 0.00 0.00 1.98
3211 4798 8.861086 CCTCTACTCCAAGCTATACAAAGATAA 58.139 37.037 0.00 0.00 0.00 1.75
3214 4801 9.262358 CTACTCCAAGCTATACAAAGATAAACC 57.738 37.037 0.00 0.00 0.00 3.27
3215 4802 7.862675 ACTCCAAGCTATACAAAGATAAACCT 58.137 34.615 0.00 0.00 0.00 3.50
3216 4803 8.989131 ACTCCAAGCTATACAAAGATAAACCTA 58.011 33.333 0.00 0.00 0.00 3.08
3218 4805 9.998106 TCCAAGCTATACAAAGATAAACCTATC 57.002 33.333 0.00 0.00 35.10 2.08
3219 4806 9.220767 CCAAGCTATACAAAGATAAACCTATCC 57.779 37.037 0.00 0.00 35.42 2.59
3223 4810 9.589111 GCTATACAAAGATAAACCTATCCTAGC 57.411 37.037 0.00 0.00 35.42 3.42
3228 4815 8.989131 ACAAAGATAAACCTATCCTAGCTAACA 58.011 33.333 0.00 0.00 35.42 2.41
3229 4816 9.832445 CAAAGATAAACCTATCCTAGCTAACAA 57.168 33.333 0.00 0.00 35.42 2.83
3230 4817 9.833917 AAAGATAAACCTATCCTAGCTAACAAC 57.166 33.333 0.00 0.00 35.42 3.32
3231 4818 7.964624 AGATAAACCTATCCTAGCTAACAACC 58.035 38.462 0.00 0.00 35.42 3.77
3232 4819 7.790314 AGATAAACCTATCCTAGCTAACAACCT 59.210 37.037 0.00 0.00 35.42 3.50
3233 4820 5.615925 AACCTATCCTAGCTAACAACCTG 57.384 43.478 0.00 0.00 0.00 4.00
3234 4821 3.388350 ACCTATCCTAGCTAACAACCTGC 59.612 47.826 0.00 0.00 0.00 4.85
3235 4822 3.244249 CCTATCCTAGCTAACAACCTGCC 60.244 52.174 0.00 0.00 0.00 4.85
3236 4823 0.535335 TCCTAGCTAACAACCTGCCG 59.465 55.000 0.00 0.00 0.00 5.69
3237 4824 1.090052 CCTAGCTAACAACCTGCCGC 61.090 60.000 0.00 0.00 0.00 6.53
3238 4825 0.391130 CTAGCTAACAACCTGCCGCA 60.391 55.000 0.00 0.00 0.00 5.69
3239 4826 0.672401 TAGCTAACAACCTGCCGCAC 60.672 55.000 0.00 0.00 0.00 5.34
3240 4827 2.978018 GCTAACAACCTGCCGCACC 61.978 63.158 0.00 0.00 0.00 5.01
3241 4828 2.281900 TAACAACCTGCCGCACCC 60.282 61.111 0.00 0.00 0.00 4.61
3242 4829 3.121406 TAACAACCTGCCGCACCCA 62.121 57.895 0.00 0.00 0.00 4.51
3243 4830 2.626255 TAACAACCTGCCGCACCCAA 62.626 55.000 0.00 0.00 0.00 4.12
3244 4831 3.673484 CAACCTGCCGCACCCAAG 61.673 66.667 0.00 0.00 0.00 3.61
3245 4832 3.884774 AACCTGCCGCACCCAAGA 61.885 61.111 0.00 0.00 0.00 3.02
3246 4833 3.210012 AACCTGCCGCACCCAAGAT 62.210 57.895 0.00 0.00 0.00 2.40
3247 4834 2.361610 CCTGCCGCACCCAAGATT 60.362 61.111 0.00 0.00 0.00 2.40
3248 4835 1.077787 CCTGCCGCACCCAAGATTA 60.078 57.895 0.00 0.00 0.00 1.75
3249 4836 1.376609 CCTGCCGCACCCAAGATTAC 61.377 60.000 0.00 0.00 0.00 1.89
3250 4837 0.676466 CTGCCGCACCCAAGATTACA 60.676 55.000 0.00 0.00 0.00 2.41
3251 4838 0.034574 TGCCGCACCCAAGATTACAT 60.035 50.000 0.00 0.00 0.00 2.29
3252 4839 0.381801 GCCGCACCCAAGATTACATG 59.618 55.000 0.00 0.00 0.00 3.21
3253 4840 1.750193 CCGCACCCAAGATTACATGT 58.250 50.000 2.69 2.69 0.00 3.21
3254 4841 2.912771 CCGCACCCAAGATTACATGTA 58.087 47.619 0.08 0.08 0.00 2.29
3255 4842 2.612212 CCGCACCCAAGATTACATGTAC 59.388 50.000 4.68 0.00 0.00 2.90
3256 4843 2.284150 CGCACCCAAGATTACATGTACG 59.716 50.000 4.68 0.00 0.00 3.67
3257 4844 3.527533 GCACCCAAGATTACATGTACGA 58.472 45.455 4.68 0.00 0.00 3.43
3258 4845 3.555956 GCACCCAAGATTACATGTACGAG 59.444 47.826 4.68 0.00 0.00 4.18
3259 4846 4.755411 CACCCAAGATTACATGTACGAGT 58.245 43.478 4.68 0.00 0.00 4.18
3260 4847 5.680408 GCACCCAAGATTACATGTACGAGTA 60.680 44.000 4.68 0.00 0.00 2.59
3261 4848 5.747197 CACCCAAGATTACATGTACGAGTAC 59.253 44.000 4.68 6.46 36.63 2.73
3262 4849 4.974275 CCCAAGATTACATGTACGAGTACG 59.026 45.833 4.68 0.00 45.75 3.67
3298 4885 6.254281 ACAACATGTCACAAAATACTAGCC 57.746 37.500 0.00 0.00 0.00 3.93
3299 4886 6.003950 ACAACATGTCACAAAATACTAGCCT 58.996 36.000 0.00 0.00 0.00 4.58
3300 4887 7.165485 ACAACATGTCACAAAATACTAGCCTA 58.835 34.615 0.00 0.00 0.00 3.93
3301 4888 7.829211 ACAACATGTCACAAAATACTAGCCTAT 59.171 33.333 0.00 0.00 0.00 2.57
3302 4889 9.325198 CAACATGTCACAAAATACTAGCCTATA 57.675 33.333 0.00 0.00 0.00 1.31
3303 4890 8.888579 ACATGTCACAAAATACTAGCCTATAC 57.111 34.615 0.00 0.00 0.00 1.47
3304 4891 8.482943 ACATGTCACAAAATACTAGCCTATACA 58.517 33.333 0.00 0.00 0.00 2.29
3305 4892 9.494271 CATGTCACAAAATACTAGCCTATACAT 57.506 33.333 0.00 0.00 0.00 2.29
3307 4894 9.899661 TGTCACAAAATACTAGCCTATACATTT 57.100 29.630 0.00 0.00 0.00 2.32
3309 4896 9.555727 TCACAAAATACTAGCCTATACATTTCC 57.444 33.333 0.00 0.00 0.00 3.13
3310 4897 9.561069 CACAAAATACTAGCCTATACATTTCCT 57.439 33.333 0.00 0.00 0.00 3.36
3316 4903 6.760291 ACTAGCCTATACATTTCCTACAAGC 58.240 40.000 0.00 0.00 0.00 4.01
3317 4904 4.974399 AGCCTATACATTTCCTACAAGCC 58.026 43.478 0.00 0.00 0.00 4.35
3318 4905 4.660771 AGCCTATACATTTCCTACAAGCCT 59.339 41.667 0.00 0.00 0.00 4.58
3319 4906 5.844516 AGCCTATACATTTCCTACAAGCCTA 59.155 40.000 0.00 0.00 0.00 3.93
3320 4907 6.502158 AGCCTATACATTTCCTACAAGCCTAT 59.498 38.462 0.00 0.00 0.00 2.57
3321 4908 6.819146 GCCTATACATTTCCTACAAGCCTATC 59.181 42.308 0.00 0.00 0.00 2.08
3322 4909 7.527196 GCCTATACATTTCCTACAAGCCTATCA 60.527 40.741 0.00 0.00 0.00 2.15
3323 4910 8.543774 CCTATACATTTCCTACAAGCCTATCAT 58.456 37.037 0.00 0.00 0.00 2.45
3324 4911 9.950496 CTATACATTTCCTACAAGCCTATCATT 57.050 33.333 0.00 0.00 0.00 2.57
3328 4915 8.903820 ACATTTCCTACAAGCCTATCATTTAAC 58.096 33.333 0.00 0.00 0.00 2.01
3329 4916 8.902806 CATTTCCTACAAGCCTATCATTTAACA 58.097 33.333 0.00 0.00 0.00 2.41
3330 4917 9.646522 ATTTCCTACAAGCCTATCATTTAACAT 57.353 29.630 0.00 0.00 0.00 2.71
3331 4918 8.677148 TTCCTACAAGCCTATCATTTAACATC 57.323 34.615 0.00 0.00 0.00 3.06
3332 4919 7.224297 TCCTACAAGCCTATCATTTAACATCC 58.776 38.462 0.00 0.00 0.00 3.51
3333 4920 7.072454 TCCTACAAGCCTATCATTTAACATCCT 59.928 37.037 0.00 0.00 0.00 3.24
3334 4921 7.389053 CCTACAAGCCTATCATTTAACATCCTC 59.611 40.741 0.00 0.00 0.00 3.71
3335 4922 6.064717 ACAAGCCTATCATTTAACATCCTCC 58.935 40.000 0.00 0.00 0.00 4.30
3336 4923 5.248380 AGCCTATCATTTAACATCCTCCC 57.752 43.478 0.00 0.00 0.00 4.30
3337 4924 4.916424 AGCCTATCATTTAACATCCTCCCT 59.084 41.667 0.00 0.00 0.00 4.20
3338 4925 5.013599 AGCCTATCATTTAACATCCTCCCTC 59.986 44.000 0.00 0.00 0.00 4.30
3339 4926 5.221925 GCCTATCATTTAACATCCTCCCTCA 60.222 44.000 0.00 0.00 0.00 3.86
3340 4927 6.691491 GCCTATCATTTAACATCCTCCCTCAA 60.691 42.308 0.00 0.00 0.00 3.02
3341 4928 7.465116 CCTATCATTTAACATCCTCCCTCAAT 58.535 38.462 0.00 0.00 0.00 2.57
3342 4929 7.609532 CCTATCATTTAACATCCTCCCTCAATC 59.390 40.741 0.00 0.00 0.00 2.67
3343 4930 6.581388 TCATTTAACATCCTCCCTCAATCT 57.419 37.500 0.00 0.00 0.00 2.40
3344 4931 6.973642 TCATTTAACATCCTCCCTCAATCTT 58.026 36.000 0.00 0.00 0.00 2.40
3345 4932 8.101309 TCATTTAACATCCTCCCTCAATCTTA 57.899 34.615 0.00 0.00 0.00 2.10
3346 4933 8.556589 TCATTTAACATCCTCCCTCAATCTTAA 58.443 33.333 0.00 0.00 0.00 1.85
3347 4934 8.624776 CATTTAACATCCTCCCTCAATCTTAAC 58.375 37.037 0.00 0.00 0.00 2.01
3348 4935 7.510675 TTAACATCCTCCCTCAATCTTAACT 57.489 36.000 0.00 0.00 0.00 2.24
3349 4936 5.622346 ACATCCTCCCTCAATCTTAACTC 57.378 43.478 0.00 0.00 0.00 3.01
3350 4937 5.032846 ACATCCTCCCTCAATCTTAACTCA 58.967 41.667 0.00 0.00 0.00 3.41
3351 4938 5.669447 ACATCCTCCCTCAATCTTAACTCAT 59.331 40.000 0.00 0.00 0.00 2.90
3352 4939 5.878406 TCCTCCCTCAATCTTAACTCATC 57.122 43.478 0.00 0.00 0.00 2.92
3353 4940 5.280499 TCCTCCCTCAATCTTAACTCATCA 58.720 41.667 0.00 0.00 0.00 3.07
3354 4941 5.726308 TCCTCCCTCAATCTTAACTCATCAA 59.274 40.000 0.00 0.00 0.00 2.57
3355 4942 6.054295 CCTCCCTCAATCTTAACTCATCAAG 58.946 44.000 0.00 0.00 0.00 3.02
3356 4943 5.994250 TCCCTCAATCTTAACTCATCAAGG 58.006 41.667 0.00 0.00 0.00 3.61
3357 4944 5.488919 TCCCTCAATCTTAACTCATCAAGGT 59.511 40.000 0.00 0.00 0.00 3.50
3358 4945 6.012508 TCCCTCAATCTTAACTCATCAAGGTT 60.013 38.462 0.00 0.00 0.00 3.50
3359 4946 6.660949 CCCTCAATCTTAACTCATCAAGGTTT 59.339 38.462 0.00 0.00 0.00 3.27
3360 4947 7.829211 CCCTCAATCTTAACTCATCAAGGTTTA 59.171 37.037 0.00 0.00 0.00 2.01
3361 4948 8.887717 CCTCAATCTTAACTCATCAAGGTTTAG 58.112 37.037 0.00 0.00 0.00 1.85
3362 4949 9.658799 CTCAATCTTAACTCATCAAGGTTTAGA 57.341 33.333 0.00 0.00 36.19 2.10
3366 4953 9.965902 ATCTTAACTCATCAAGGTTTAGATTGT 57.034 29.630 0.00 0.00 38.07 2.71
3367 4954 9.793259 TCTTAACTCATCAAGGTTTAGATTGTT 57.207 29.630 0.00 0.00 29.88 2.83
3369 4956 9.793259 TTAACTCATCAAGGTTTAGATTGTTCT 57.207 29.630 0.00 0.00 35.90 3.01
3370 4957 8.697507 AACTCATCAAGGTTTAGATTGTTCTT 57.302 30.769 0.00 0.00 33.17 2.52
3371 4958 8.103948 ACTCATCAAGGTTTAGATTGTTCTTG 57.896 34.615 0.00 0.00 33.17 3.02
3372 4959 7.939039 ACTCATCAAGGTTTAGATTGTTCTTGA 59.061 33.333 0.00 0.00 42.77 3.02
3373 4960 8.690203 TCATCAAGGTTTAGATTGTTCTTGAA 57.310 30.769 7.50 0.00 42.17 2.69
3374 4961 8.786898 TCATCAAGGTTTAGATTGTTCTTGAAG 58.213 33.333 7.50 4.27 42.17 3.02
3375 4962 7.510549 TCAAGGTTTAGATTGTTCTTGAAGG 57.489 36.000 0.00 0.00 38.01 3.46
3376 4963 5.966742 AGGTTTAGATTGTTCTTGAAGGC 57.033 39.130 0.00 0.00 33.17 4.35
3377 4964 5.635120 AGGTTTAGATTGTTCTTGAAGGCT 58.365 37.500 0.00 0.00 33.17 4.58
3378 4965 6.071320 AGGTTTAGATTGTTCTTGAAGGCTT 58.929 36.000 0.00 0.00 33.17 4.35
3379 4966 6.015940 AGGTTTAGATTGTTCTTGAAGGCTTG 60.016 38.462 3.46 0.00 33.17 4.01
3380 4967 6.016276 GGTTTAGATTGTTCTTGAAGGCTTGA 60.016 38.462 3.46 0.00 33.17 3.02
3381 4968 7.425606 GTTTAGATTGTTCTTGAAGGCTTGAA 58.574 34.615 3.46 0.34 33.17 2.69
3382 4969 7.581213 TTAGATTGTTCTTGAAGGCTTGAAA 57.419 32.000 3.46 0.00 33.17 2.69
3383 4970 5.836347 AGATTGTTCTTGAAGGCTTGAAAC 58.164 37.500 3.46 0.00 0.00 2.78
3384 4971 5.595952 AGATTGTTCTTGAAGGCTTGAAACT 59.404 36.000 3.46 0.00 0.00 2.66
3385 4972 4.637483 TGTTCTTGAAGGCTTGAAACTG 57.363 40.909 3.46 0.00 0.00 3.16
3386 4973 4.016444 TGTTCTTGAAGGCTTGAAACTGT 58.984 39.130 3.46 0.00 0.00 3.55
3387 4974 4.096382 TGTTCTTGAAGGCTTGAAACTGTC 59.904 41.667 3.46 0.00 0.00 3.51
3388 4975 2.872245 TCTTGAAGGCTTGAAACTGTCG 59.128 45.455 3.46 0.00 0.00 4.35
3389 4976 2.613026 TGAAGGCTTGAAACTGTCGA 57.387 45.000 3.46 0.00 0.00 4.20
3390 4977 2.912771 TGAAGGCTTGAAACTGTCGAA 58.087 42.857 3.46 0.00 0.00 3.71
3391 4978 3.476552 TGAAGGCTTGAAACTGTCGAAT 58.523 40.909 3.46 0.00 0.00 3.34
3392 4979 3.882888 TGAAGGCTTGAAACTGTCGAATT 59.117 39.130 3.46 0.00 0.00 2.17
3393 4980 4.338118 TGAAGGCTTGAAACTGTCGAATTT 59.662 37.500 3.46 0.00 0.00 1.82
3394 4981 4.228912 AGGCTTGAAACTGTCGAATTTG 57.771 40.909 0.00 0.00 0.00 2.32
3395 4982 3.632145 AGGCTTGAAACTGTCGAATTTGT 59.368 39.130 0.00 0.00 0.00 2.83
3396 4983 4.819630 AGGCTTGAAACTGTCGAATTTGTA 59.180 37.500 0.00 0.00 0.00 2.41
3397 4984 5.298276 AGGCTTGAAACTGTCGAATTTGTAA 59.702 36.000 0.00 0.00 0.00 2.41
3398 4985 5.974751 GGCTTGAAACTGTCGAATTTGTAAA 59.025 36.000 0.00 0.00 0.00 2.01
3399 4986 6.142320 GGCTTGAAACTGTCGAATTTGTAAAG 59.858 38.462 0.00 0.00 0.00 1.85
3400 4987 6.142320 GCTTGAAACTGTCGAATTTGTAAAGG 59.858 38.462 0.00 0.00 0.00 3.11
3401 4988 5.516090 TGAAACTGTCGAATTTGTAAAGGC 58.484 37.500 0.00 0.00 0.00 4.35
3402 4989 5.298276 TGAAACTGTCGAATTTGTAAAGGCT 59.702 36.000 0.00 0.00 0.00 4.58
3403 4990 5.767816 AACTGTCGAATTTGTAAAGGCTT 57.232 34.783 0.00 0.00 0.00 4.35
3404 4991 5.108385 ACTGTCGAATTTGTAAAGGCTTG 57.892 39.130 0.00 0.00 0.00 4.01
3405 4992 4.023193 ACTGTCGAATTTGTAAAGGCTTGG 60.023 41.667 0.00 0.00 0.00 3.61
3406 4993 3.886505 TGTCGAATTTGTAAAGGCTTGGT 59.113 39.130 0.00 0.00 0.00 3.67
3407 4994 4.226761 GTCGAATTTGTAAAGGCTTGGTG 58.773 43.478 0.00 0.00 0.00 4.17
3408 4995 4.023536 GTCGAATTTGTAAAGGCTTGGTGA 60.024 41.667 0.00 0.00 0.00 4.02
3409 4996 4.580995 TCGAATTTGTAAAGGCTTGGTGAA 59.419 37.500 0.00 0.00 0.00 3.18
3410 4997 5.067936 TCGAATTTGTAAAGGCTTGGTGAAA 59.932 36.000 0.00 0.00 0.00 2.69
3411 4998 5.174943 CGAATTTGTAAAGGCTTGGTGAAAC 59.825 40.000 0.00 0.00 0.00 2.78
3428 5015 6.076981 GTGAAACCATCAACAACTTGATCT 57.923 37.500 0.00 0.00 44.04 2.75
3429 5016 6.145535 GTGAAACCATCAACAACTTGATCTC 58.854 40.000 0.00 0.00 44.04 2.75
3430 5017 5.241506 TGAAACCATCAACAACTTGATCTCC 59.758 40.000 0.00 0.00 44.04 3.71
3431 5018 4.647564 ACCATCAACAACTTGATCTCCT 57.352 40.909 0.00 0.00 44.04 3.69
3432 5019 4.330250 ACCATCAACAACTTGATCTCCTG 58.670 43.478 0.00 0.00 44.04 3.86
3433 5020 4.202503 ACCATCAACAACTTGATCTCCTGT 60.203 41.667 0.00 0.00 44.04 4.00
3434 5021 4.763793 CCATCAACAACTTGATCTCCTGTT 59.236 41.667 0.00 0.00 44.04 3.16
3435 5022 5.335426 CCATCAACAACTTGATCTCCTGTTG 60.335 44.000 17.24 17.24 44.04 3.33
3436 5023 4.136796 TCAACAACTTGATCTCCTGTTGG 58.863 43.478 20.38 8.99 44.40 3.77
3437 5024 4.136796 CAACAACTTGATCTCCTGTTGGA 58.863 43.478 16.28 0.00 41.91 3.53
3438 5025 4.437682 ACAACTTGATCTCCTGTTGGAA 57.562 40.909 17.70 0.00 42.66 3.53
3439 5026 4.990526 ACAACTTGATCTCCTGTTGGAAT 58.009 39.130 17.70 3.10 42.66 3.01
3440 5027 4.763793 ACAACTTGATCTCCTGTTGGAATG 59.236 41.667 17.70 0.00 42.66 2.67
3441 5028 4.916041 ACTTGATCTCCTGTTGGAATGA 57.084 40.909 0.00 0.00 42.66 2.57
3442 5029 5.246981 ACTTGATCTCCTGTTGGAATGAA 57.753 39.130 0.00 0.00 42.66 2.57
3443 5030 5.006386 ACTTGATCTCCTGTTGGAATGAAC 58.994 41.667 0.00 0.00 42.66 3.18
3444 5031 4.916041 TGATCTCCTGTTGGAATGAACT 57.084 40.909 0.00 0.00 42.66 3.01
3445 5032 4.582869 TGATCTCCTGTTGGAATGAACTG 58.417 43.478 0.00 0.00 42.66 3.16
3446 5033 4.042062 TGATCTCCTGTTGGAATGAACTGT 59.958 41.667 0.00 0.00 42.66 3.55
3447 5034 5.248248 TGATCTCCTGTTGGAATGAACTGTA 59.752 40.000 0.00 0.00 42.66 2.74
3448 5035 5.762179 TCTCCTGTTGGAATGAACTGTAT 57.238 39.130 0.00 0.00 42.66 2.29
3449 5036 5.734720 TCTCCTGTTGGAATGAACTGTATC 58.265 41.667 0.00 0.00 42.66 2.24
3450 5037 5.485353 TCTCCTGTTGGAATGAACTGTATCT 59.515 40.000 0.00 0.00 42.66 1.98
3451 5038 5.734720 TCCTGTTGGAATGAACTGTATCTC 58.265 41.667 0.00 0.00 39.87 2.75
3452 5039 5.485353 TCCTGTTGGAATGAACTGTATCTCT 59.515 40.000 0.00 0.00 39.87 3.10
3453 5040 6.667848 TCCTGTTGGAATGAACTGTATCTCTA 59.332 38.462 0.00 0.00 39.87 2.43
3454 5041 7.180229 TCCTGTTGGAATGAACTGTATCTCTAA 59.820 37.037 0.00 0.00 39.87 2.10
3455 5042 7.989741 CCTGTTGGAATGAACTGTATCTCTAAT 59.010 37.037 0.00 0.00 34.57 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 9.719355 GAACATATTTGTAATTTCCAGGGTTTT 57.281 29.630 0.00 0.00 34.06 2.43
54 55 9.100197 AGAACATATTTGTAATTTCCAGGGTTT 57.900 29.630 0.00 0.00 34.06 3.27
55 56 8.664669 AGAACATATTTGTAATTTCCAGGGTT 57.335 30.769 0.00 0.00 34.06 4.11
58 59 8.748412 TCCAAGAACATATTTGTAATTTCCAGG 58.252 33.333 0.00 0.00 34.06 4.45
111 112 9.554395 TTTCTTTTCTTTCTCCTGTTTGTTTTT 57.446 25.926 0.00 0.00 0.00 1.94
112 113 9.554395 TTTTCTTTTCTTTCTCCTGTTTGTTTT 57.446 25.926 0.00 0.00 0.00 2.43
113 114 9.554395 TTTTTCTTTTCTTTCTCCTGTTTGTTT 57.446 25.926 0.00 0.00 0.00 2.83
114 115 8.988934 GTTTTTCTTTTCTTTCTCCTGTTTGTT 58.011 29.630 0.00 0.00 0.00 2.83
115 116 7.602644 GGTTTTTCTTTTCTTTCTCCTGTTTGT 59.397 33.333 0.00 0.00 0.00 2.83
116 117 7.201435 CGGTTTTTCTTTTCTTTCTCCTGTTTG 60.201 37.037 0.00 0.00 0.00 2.93
117 118 6.811665 CGGTTTTTCTTTTCTTTCTCCTGTTT 59.188 34.615 0.00 0.00 0.00 2.83
118 119 6.330278 CGGTTTTTCTTTTCTTTCTCCTGTT 58.670 36.000 0.00 0.00 0.00 3.16
119 120 5.163550 CCGGTTTTTCTTTTCTTTCTCCTGT 60.164 40.000 0.00 0.00 0.00 4.00
120 121 5.067283 TCCGGTTTTTCTTTTCTTTCTCCTG 59.933 40.000 0.00 0.00 0.00 3.86
121 122 5.198207 TCCGGTTTTTCTTTTCTTTCTCCT 58.802 37.500 0.00 0.00 0.00 3.69
122 123 5.509716 TCCGGTTTTTCTTTTCTTTCTCC 57.490 39.130 0.00 0.00 0.00 3.71
123 124 6.792326 TCTTCCGGTTTTTCTTTTCTTTCTC 58.208 36.000 0.00 0.00 0.00 2.87
124 125 6.769134 TCTTCCGGTTTTTCTTTTCTTTCT 57.231 33.333 0.00 0.00 0.00 2.52
125 126 7.821595 TTTCTTCCGGTTTTTCTTTTCTTTC 57.178 32.000 0.00 0.00 0.00 2.62
153 154 5.505181 TCTAGAATGTTTCAGGCTCCTTT 57.495 39.130 0.00 0.00 0.00 3.11
154 155 5.505181 TTCTAGAATGTTTCAGGCTCCTT 57.495 39.130 0.00 0.00 0.00 3.36
155 156 5.249420 GTTTCTAGAATGTTTCAGGCTCCT 58.751 41.667 5.89 0.00 0.00 3.69
156 157 4.396478 GGTTTCTAGAATGTTTCAGGCTCC 59.604 45.833 5.89 0.00 0.00 4.70
157 158 5.249420 AGGTTTCTAGAATGTTTCAGGCTC 58.751 41.667 5.89 0.00 0.00 4.70
158 159 5.221925 TGAGGTTTCTAGAATGTTTCAGGCT 60.222 40.000 5.89 0.00 0.00 4.58
190 191 5.411361 GGTTTTGTTCCTATTTGGCAAATCC 59.589 40.000 27.42 14.91 34.07 3.01
194 195 4.202305 CCTGGTTTTGTTCCTATTTGGCAA 60.202 41.667 0.00 0.00 35.26 4.52
195 196 3.323403 CCTGGTTTTGTTCCTATTTGGCA 59.677 43.478 0.00 0.00 35.26 4.92
198 199 5.782893 TGACCTGGTTTTGTTCCTATTTG 57.217 39.130 0.00 0.00 0.00 2.32
201 202 5.061721 AGTTGACCTGGTTTTGTTCCTAT 57.938 39.130 0.00 0.00 0.00 2.57
280 1411 5.072329 TCTGACTCCTTTGGTTTCTTCAGAT 59.928 40.000 0.00 0.00 34.69 2.90
619 1750 1.181741 AGCTTGACTGGAGACGCAGA 61.182 55.000 0.00 0.00 0.00 4.26
650 1781 4.088634 CTGACCATGGAATTTCTTGGGAA 58.911 43.478 21.47 8.83 36.58 3.97
666 1797 5.394663 GCTCTACTCTAGCAAATTCTGACCA 60.395 44.000 0.00 0.00 39.83 4.02
721 1852 5.440234 TCTAATTATCTGTCTGCTCGTCC 57.560 43.478 0.00 0.00 0.00 4.79
768 1899 5.806654 ACTTGTCCAAGCCACATTAATTT 57.193 34.783 6.94 0.00 41.99 1.82
868 2347 2.961526 TTCTTCAGGGATGACTACGC 57.038 50.000 0.00 0.00 0.00 4.42
869 2348 5.874810 TGAAAATTCTTCAGGGATGACTACG 59.125 40.000 0.00 0.00 0.00 3.51
870 2349 6.094186 GGTGAAAATTCTTCAGGGATGACTAC 59.906 42.308 4.08 0.00 0.00 2.73
957 2441 3.488090 GTAAGCGTGCTGGTCGGC 61.488 66.667 0.00 0.00 0.00 5.54
961 2445 0.108138 GATGAGGTAAGCGTGCTGGT 60.108 55.000 0.00 0.00 0.00 4.00
968 2452 3.134458 GGAAGGATTGATGAGGTAAGCG 58.866 50.000 0.00 0.00 0.00 4.68
985 2469 0.332632 TCCATGGGCAAGGAAGGAAG 59.667 55.000 13.02 0.00 0.00 3.46
987 2471 1.574526 CCTCCATGGGCAAGGAAGGA 61.575 60.000 13.02 0.00 32.57 3.36
988 2472 1.076485 CCTCCATGGGCAAGGAAGG 60.076 63.158 13.02 5.37 32.57 3.46
989 2473 0.040204 AACCTCCATGGGCAAGGAAG 59.960 55.000 21.83 6.21 41.11 3.46
990 2474 0.251742 CAACCTCCATGGGCAAGGAA 60.252 55.000 21.83 0.00 41.11 3.36
1149 2636 4.710167 TCCGCCTCCTCGACGACA 62.710 66.667 0.00 0.00 0.00 4.35
1331 2818 3.062234 CCTCCGAGAACGCTTGATTAAAC 59.938 47.826 0.00 0.00 38.29 2.01
1371 2876 0.316522 CATCATCCGACTCGAGGCAT 59.683 55.000 20.47 1.42 0.00 4.40
1455 2960 1.153842 CCTACGTGACATGCGCTCA 60.154 57.895 9.73 0.13 0.00 4.26
1591 3097 1.329256 CCTATGATCGGAAGGACGGT 58.671 55.000 2.40 0.00 31.64 4.83
1650 3156 2.002586 CGAACTCTTTCATCGCCACAT 58.997 47.619 0.00 0.00 0.00 3.21
1897 3413 4.726583 TCGTAAGACATAGCACCTAGGAT 58.273 43.478 17.98 3.31 45.01 3.24
1928 3444 7.962918 CGAAGGATAGTGTTTTGAAAAGGTATG 59.037 37.037 0.00 0.00 0.00 2.39
2068 3587 7.693969 ACTTAACATCCAAATTCCTTCTCAG 57.306 36.000 0.00 0.00 0.00 3.35
2080 3599 4.363999 CAACGCCAAAACTTAACATCCAA 58.636 39.130 0.00 0.00 0.00 3.53
2424 3943 1.270839 CCTTGTCGCTTTCTTCCTGGA 60.271 52.381 0.00 0.00 0.00 3.86
2430 3949 1.230324 GCACTCCTTGTCGCTTTCTT 58.770 50.000 0.00 0.00 0.00 2.52
2433 3952 0.465460 TTGGCACTCCTTGTCGCTTT 60.465 50.000 0.00 0.00 29.36 3.51
2470 3989 8.827677 AGTACAAGAGTTTCATTACACAAGTTC 58.172 33.333 0.00 0.00 0.00 3.01
2512 4031 9.547753 AGTTGAATGGTCTATAACACATACATC 57.452 33.333 0.00 0.00 0.00 3.06
2593 4113 1.928567 CCCTTACTCCCCTGCCCAA 60.929 63.158 0.00 0.00 0.00 4.12
2595 4115 3.810188 GCCCTTACTCCCCTGCCC 61.810 72.222 0.00 0.00 0.00 5.36
2598 4118 4.176752 GCCGCCCTTACTCCCCTG 62.177 72.222 0.00 0.00 0.00 4.45
2636 4157 6.173339 GGTATATACACTATGCCTGCACAAT 58.827 40.000 14.70 0.00 0.00 2.71
2637 4158 5.071115 TGGTATATACACTATGCCTGCACAA 59.929 40.000 14.70 0.00 31.99 3.33
2771 4349 3.173965 CTCCTTGTCACTTCCTCCCTAA 58.826 50.000 0.00 0.00 0.00 2.69
2772 4350 2.111972 ACTCCTTGTCACTTCCTCCCTA 59.888 50.000 0.00 0.00 0.00 3.53
2783 4361 2.906389 AGTAGATTGGCACTCCTTGTCA 59.094 45.455 0.69 0.00 38.37 3.58
2784 4362 3.618690 AGTAGATTGGCACTCCTTGTC 57.381 47.619 0.69 0.00 0.00 3.18
2819 4400 9.019656 TCAAAAAGTACAAGTATGGCAATATGT 57.980 29.630 0.00 0.00 0.00 2.29
2824 4405 8.856153 TCTATCAAAAAGTACAAGTATGGCAA 57.144 30.769 0.00 0.00 0.00 4.52
2848 4431 6.019640 CCACACAAACACATCTGTTTTTCATC 60.020 38.462 0.00 0.00 46.55 2.92
2881 4464 8.528044 AGTTGACCACTCTTTAAAATGGTTTA 57.472 30.769 15.86 8.71 45.55 2.01
2900 4483 4.633565 GGATCTCCAGAACATTGAGTTGAC 59.366 45.833 0.00 0.00 36.88 3.18
2944 4527 9.674068 ATGATCAGGATTCATTTGATCTGATAG 57.326 33.333 18.04 0.00 44.67 2.08
2998 4581 1.811965 CAGGATTCGTTCAATGGTGCA 59.188 47.619 0.00 0.00 0.00 4.57
3010 4593 5.423610 ACCTTCCTATATGGATCAGGATTCG 59.576 44.000 14.18 0.00 42.77 3.34
3021 4604 9.853177 AATTAGTTTTCTCACCTTCCTATATGG 57.147 33.333 0.00 0.00 37.10 2.74
3025 4608 9.807921 TTTCAATTAGTTTTCTCACCTTCCTAT 57.192 29.630 0.00 0.00 0.00 2.57
3059 4643 8.781067 TTCTTTCACACTTGAACAAATATTCG 57.219 30.769 0.00 0.00 41.64 3.34
3071 4658 6.694411 CCACAATTCTCTTTCTTTCACACTTG 59.306 38.462 0.00 0.00 0.00 3.16
3078 4665 5.149977 CGCTTCCACAATTCTCTTTCTTTC 58.850 41.667 0.00 0.00 0.00 2.62
3079 4666 4.580580 ACGCTTCCACAATTCTCTTTCTTT 59.419 37.500 0.00 0.00 0.00 2.52
3080 4667 4.137543 ACGCTTCCACAATTCTCTTTCTT 58.862 39.130 0.00 0.00 0.00 2.52
3081 4668 3.744660 ACGCTTCCACAATTCTCTTTCT 58.255 40.909 0.00 0.00 0.00 2.52
3082 4669 5.563842 CATACGCTTCCACAATTCTCTTTC 58.436 41.667 0.00 0.00 0.00 2.62
3083 4670 4.142600 GCATACGCTTCCACAATTCTCTTT 60.143 41.667 0.00 0.00 34.30 2.52
3084 4671 3.375299 GCATACGCTTCCACAATTCTCTT 59.625 43.478 0.00 0.00 34.30 2.85
3085 4672 2.939103 GCATACGCTTCCACAATTCTCT 59.061 45.455 0.00 0.00 34.30 3.10
3086 4673 3.325230 GCATACGCTTCCACAATTCTC 57.675 47.619 0.00 0.00 34.30 2.87
3099 4686 2.703409 CTGCCGAACAGCATACGC 59.297 61.111 0.00 0.00 43.09 4.42
3100 4687 2.173669 CCCTGCCGAACAGCATACG 61.174 63.158 0.29 0.00 45.78 3.06
3101 4688 1.090052 GTCCCTGCCGAACAGCATAC 61.090 60.000 0.29 0.00 45.78 2.39
3102 4689 1.220749 GTCCCTGCCGAACAGCATA 59.779 57.895 0.29 0.00 45.78 3.14
3103 4690 2.045926 GTCCCTGCCGAACAGCAT 60.046 61.111 0.29 0.00 45.78 3.79
3104 4691 4.680237 CGTCCCTGCCGAACAGCA 62.680 66.667 0.29 0.00 45.78 4.41
3120 4707 4.521010 TGTCTCTATATAACACGAACGCG 58.479 43.478 3.53 3.53 44.79 6.01
3121 4708 6.140786 TGATGTCTCTATATAACACGAACGC 58.859 40.000 0.00 0.00 0.00 4.84
3122 4709 7.573627 TCTGATGTCTCTATATAACACGAACG 58.426 38.462 0.00 0.00 0.00 3.95
3123 4710 9.900710 AATCTGATGTCTCTATATAACACGAAC 57.099 33.333 0.00 0.00 0.00 3.95
3134 4721 9.821240 ACCTATCTTGTAATCTGATGTCTCTAT 57.179 33.333 0.00 0.00 0.00 1.98
3135 4722 9.647918 AACCTATCTTGTAATCTGATGTCTCTA 57.352 33.333 0.00 0.00 0.00 2.43
3136 4723 8.420222 CAACCTATCTTGTAATCTGATGTCTCT 58.580 37.037 0.00 0.00 0.00 3.10
3137 4724 7.170658 GCAACCTATCTTGTAATCTGATGTCTC 59.829 40.741 0.00 0.00 0.00 3.36
3138 4725 6.989169 GCAACCTATCTTGTAATCTGATGTCT 59.011 38.462 0.00 0.00 0.00 3.41
3139 4726 6.074088 CGCAACCTATCTTGTAATCTGATGTC 60.074 42.308 0.00 0.00 0.00 3.06
3140 4727 5.755375 CGCAACCTATCTTGTAATCTGATGT 59.245 40.000 0.00 0.00 0.00 3.06
3141 4728 5.333645 GCGCAACCTATCTTGTAATCTGATG 60.334 44.000 0.30 0.00 0.00 3.07
3142 4729 4.752101 GCGCAACCTATCTTGTAATCTGAT 59.248 41.667 0.30 0.00 0.00 2.90
3143 4730 4.119862 GCGCAACCTATCTTGTAATCTGA 58.880 43.478 0.30 0.00 0.00 3.27
3144 4731 3.871006 TGCGCAACCTATCTTGTAATCTG 59.129 43.478 8.16 0.00 0.00 2.90
3145 4732 4.122776 CTGCGCAACCTATCTTGTAATCT 58.877 43.478 13.05 0.00 0.00 2.40
3146 4733 3.248602 CCTGCGCAACCTATCTTGTAATC 59.751 47.826 13.05 0.00 0.00 1.75
3147 4734 3.206150 CCTGCGCAACCTATCTTGTAAT 58.794 45.455 13.05 0.00 0.00 1.89
3148 4735 2.027561 ACCTGCGCAACCTATCTTGTAA 60.028 45.455 13.05 0.00 0.00 2.41
3149 4736 1.553248 ACCTGCGCAACCTATCTTGTA 59.447 47.619 13.05 0.00 0.00 2.41
3150 4737 0.324943 ACCTGCGCAACCTATCTTGT 59.675 50.000 13.05 0.00 0.00 3.16
3151 4738 1.131126 CAACCTGCGCAACCTATCTTG 59.869 52.381 13.05 1.45 0.00 3.02
3152 4739 1.271379 ACAACCTGCGCAACCTATCTT 60.271 47.619 13.05 0.00 0.00 2.40
3153 4740 0.324943 ACAACCTGCGCAACCTATCT 59.675 50.000 13.05 0.00 0.00 1.98
3154 4741 1.165270 AACAACCTGCGCAACCTATC 58.835 50.000 13.05 0.00 0.00 2.08
3155 4742 2.081462 GTAACAACCTGCGCAACCTAT 58.919 47.619 13.05 0.00 0.00 2.57
3156 4743 1.071071 AGTAACAACCTGCGCAACCTA 59.929 47.619 13.05 0.00 0.00 3.08
3157 4744 0.179029 AGTAACAACCTGCGCAACCT 60.179 50.000 13.05 0.00 0.00 3.50
3158 4745 1.463444 CTAGTAACAACCTGCGCAACC 59.537 52.381 13.05 0.00 0.00 3.77
3159 4746 2.157085 GTCTAGTAACAACCTGCGCAAC 59.843 50.000 13.05 4.52 0.00 4.17
3160 4747 2.036733 AGTCTAGTAACAACCTGCGCAA 59.963 45.455 13.05 0.00 0.00 4.85
3161 4748 1.616865 AGTCTAGTAACAACCTGCGCA 59.383 47.619 10.98 10.98 0.00 6.09
3162 4749 2.365408 AGTCTAGTAACAACCTGCGC 57.635 50.000 0.00 0.00 0.00 6.09
3163 4750 2.993899 CCAAGTCTAGTAACAACCTGCG 59.006 50.000 0.00 0.00 0.00 5.18
3164 4751 2.742589 GCCAAGTCTAGTAACAACCTGC 59.257 50.000 0.00 0.00 0.00 4.85
3165 4752 3.008049 AGGCCAAGTCTAGTAACAACCTG 59.992 47.826 5.01 0.00 0.00 4.00
3166 4753 3.248888 AGGCCAAGTCTAGTAACAACCT 58.751 45.455 5.01 0.00 0.00 3.50
3167 4754 3.261137 AGAGGCCAAGTCTAGTAACAACC 59.739 47.826 5.01 0.00 0.00 3.77
3168 4755 4.538746 AGAGGCCAAGTCTAGTAACAAC 57.461 45.455 5.01 0.00 0.00 3.32
3169 4756 5.331069 AGTAGAGGCCAAGTCTAGTAACAA 58.669 41.667 5.01 0.00 29.87 2.83
3170 4757 4.931914 AGTAGAGGCCAAGTCTAGTAACA 58.068 43.478 5.01 0.00 29.87 2.41
3171 4758 4.338964 GGAGTAGAGGCCAAGTCTAGTAAC 59.661 50.000 5.01 0.10 31.50 2.50
3172 4759 4.017775 TGGAGTAGAGGCCAAGTCTAGTAA 60.018 45.833 5.01 0.00 31.50 2.24
3173 4760 3.526430 TGGAGTAGAGGCCAAGTCTAGTA 59.474 47.826 5.01 0.00 31.50 1.82
3174 4761 2.312140 TGGAGTAGAGGCCAAGTCTAGT 59.688 50.000 5.01 6.53 33.62 2.57
3175 4762 3.019799 TGGAGTAGAGGCCAAGTCTAG 57.980 52.381 5.01 0.00 0.00 2.43
3176 4763 3.468071 TTGGAGTAGAGGCCAAGTCTA 57.532 47.619 5.01 0.00 39.14 2.59
3177 4764 2.327325 TTGGAGTAGAGGCCAAGTCT 57.673 50.000 5.01 0.90 39.14 3.24
3181 4768 2.247699 TAGCTTGGAGTAGAGGCCAA 57.752 50.000 5.01 0.00 41.61 4.52
3182 4769 2.478872 ATAGCTTGGAGTAGAGGCCA 57.521 50.000 5.01 0.00 0.00 5.36
3183 4770 3.231818 TGTATAGCTTGGAGTAGAGGCC 58.768 50.000 0.00 0.00 0.00 5.19
3184 4771 4.939052 TTGTATAGCTTGGAGTAGAGGC 57.061 45.455 0.00 0.00 0.00 4.70
3185 4772 6.716934 TCTTTGTATAGCTTGGAGTAGAGG 57.283 41.667 0.00 0.00 0.00 3.69
3188 4775 9.262358 GGTTTATCTTTGTATAGCTTGGAGTAG 57.738 37.037 0.00 0.00 0.00 2.57
3189 4776 8.989131 AGGTTTATCTTTGTATAGCTTGGAGTA 58.011 33.333 0.00 0.00 0.00 2.59
3190 4777 7.862675 AGGTTTATCTTTGTATAGCTTGGAGT 58.137 34.615 0.00 0.00 0.00 3.85
3192 4779 9.998106 GATAGGTTTATCTTTGTATAGCTTGGA 57.002 33.333 0.00 0.00 34.16 3.53
3193 4780 9.220767 GGATAGGTTTATCTTTGTATAGCTTGG 57.779 37.037 0.00 0.00 36.67 3.61
3197 4784 9.589111 GCTAGGATAGGTTTATCTTTGTATAGC 57.411 37.037 0.00 0.00 39.70 2.97
3213 4800 3.244249 GGCAGGTTGTTAGCTAGGATAGG 60.244 52.174 0.00 0.00 39.70 2.57
3214 4801 3.553096 CGGCAGGTTGTTAGCTAGGATAG 60.553 52.174 0.00 0.00 43.09 2.08
3215 4802 2.364324 CGGCAGGTTGTTAGCTAGGATA 59.636 50.000 0.00 0.00 0.00 2.59
3216 4803 1.139058 CGGCAGGTTGTTAGCTAGGAT 59.861 52.381 0.00 0.00 0.00 3.24
3217 4804 0.535335 CGGCAGGTTGTTAGCTAGGA 59.465 55.000 0.00 0.00 0.00 2.94
3218 4805 1.090052 GCGGCAGGTTGTTAGCTAGG 61.090 60.000 0.00 0.00 0.00 3.02
3219 4806 0.391130 TGCGGCAGGTTGTTAGCTAG 60.391 55.000 0.00 0.00 0.00 3.42
3220 4807 0.672401 GTGCGGCAGGTTGTTAGCTA 60.672 55.000 1.18 0.00 0.00 3.32
3221 4808 1.966451 GTGCGGCAGGTTGTTAGCT 60.966 57.895 1.18 0.00 0.00 3.32
3222 4809 2.561373 GTGCGGCAGGTTGTTAGC 59.439 61.111 1.18 0.00 0.00 3.09
3223 4810 2.332654 GGGTGCGGCAGGTTGTTAG 61.333 63.158 1.18 0.00 0.00 2.34
3224 4811 2.281900 GGGTGCGGCAGGTTGTTA 60.282 61.111 1.18 0.00 0.00 2.41
3225 4812 4.514585 TGGGTGCGGCAGGTTGTT 62.515 61.111 1.18 0.00 0.00 2.83
3226 4813 4.514585 TTGGGTGCGGCAGGTTGT 62.515 61.111 1.18 0.00 0.00 3.32
3227 4814 3.673484 CTTGGGTGCGGCAGGTTG 61.673 66.667 1.18 0.00 0.00 3.77
3228 4815 2.713531 AATCTTGGGTGCGGCAGGTT 62.714 55.000 1.18 0.00 0.00 3.50
3229 4816 1.847798 TAATCTTGGGTGCGGCAGGT 61.848 55.000 1.18 0.00 0.00 4.00
3230 4817 1.077787 TAATCTTGGGTGCGGCAGG 60.078 57.895 1.18 0.00 0.00 4.85
3231 4818 0.676466 TGTAATCTTGGGTGCGGCAG 60.676 55.000 1.18 0.00 0.00 4.85
3232 4819 0.034574 ATGTAATCTTGGGTGCGGCA 60.035 50.000 0.00 0.00 0.00 5.69
3233 4820 0.381801 CATGTAATCTTGGGTGCGGC 59.618 55.000 0.00 0.00 0.00 6.53
3234 4821 1.750193 ACATGTAATCTTGGGTGCGG 58.250 50.000 0.00 0.00 0.00 5.69
3235 4822 2.284150 CGTACATGTAATCTTGGGTGCG 59.716 50.000 7.25 0.00 0.00 5.34
3236 4823 3.527533 TCGTACATGTAATCTTGGGTGC 58.472 45.455 7.25 0.00 0.00 5.01
3237 4824 4.755411 ACTCGTACATGTAATCTTGGGTG 58.245 43.478 7.25 0.00 0.00 4.61
3238 4825 5.449588 CGTACTCGTACATGTAATCTTGGGT 60.450 44.000 7.25 4.37 35.87 4.51
3239 4826 4.974275 CGTACTCGTACATGTAATCTTGGG 59.026 45.833 7.25 0.00 35.87 4.12
3261 4848 4.201551 GACATGTTGTCACGTATTGGTACG 60.202 45.833 0.00 6.45 46.22 3.67
3262 4849 5.199424 GACATGTTGTCACGTATTGGTAC 57.801 43.478 0.00 0.00 46.22 3.34
3275 4862 6.003950 AGGCTAGTATTTTGTGACATGTTGT 58.996 36.000 0.00 0.00 0.00 3.32
3276 4863 6.500684 AGGCTAGTATTTTGTGACATGTTG 57.499 37.500 0.00 0.00 0.00 3.33
3277 4864 9.326413 GTATAGGCTAGTATTTTGTGACATGTT 57.674 33.333 0.00 0.00 0.00 2.71
3278 4865 8.482943 TGTATAGGCTAGTATTTTGTGACATGT 58.517 33.333 0.00 0.00 0.00 3.21
3279 4866 8.887036 TGTATAGGCTAGTATTTTGTGACATG 57.113 34.615 0.00 0.00 0.00 3.21
3281 4868 9.899661 AAATGTATAGGCTAGTATTTTGTGACA 57.100 29.630 0.00 0.00 0.00 3.58
3283 4870 9.555727 GGAAATGTATAGGCTAGTATTTTGTGA 57.444 33.333 0.00 0.00 0.00 3.58
3284 4871 9.561069 AGGAAATGTATAGGCTAGTATTTTGTG 57.439 33.333 0.00 0.00 0.00 3.33
3290 4877 8.532819 GCTTGTAGGAAATGTATAGGCTAGTAT 58.467 37.037 0.00 0.00 0.00 2.12
3291 4878 7.039223 GGCTTGTAGGAAATGTATAGGCTAGTA 60.039 40.741 0.00 0.00 0.00 1.82
3292 4879 6.239629 GGCTTGTAGGAAATGTATAGGCTAGT 60.240 42.308 0.00 0.00 0.00 2.57
3293 4880 6.014156 AGGCTTGTAGGAAATGTATAGGCTAG 60.014 42.308 0.00 0.00 35.80 3.42
3294 4881 5.844516 AGGCTTGTAGGAAATGTATAGGCTA 59.155 40.000 0.00 0.00 35.80 3.93
3295 4882 4.660771 AGGCTTGTAGGAAATGTATAGGCT 59.339 41.667 0.00 0.00 33.15 4.58
3296 4883 4.974399 AGGCTTGTAGGAAATGTATAGGC 58.026 43.478 0.00 0.00 0.00 3.93
3297 4884 7.907389 TGATAGGCTTGTAGGAAATGTATAGG 58.093 38.462 0.00 0.00 0.00 2.57
3298 4885 9.950496 AATGATAGGCTTGTAGGAAATGTATAG 57.050 33.333 0.00 0.00 0.00 1.31
3302 4889 8.903820 GTTAAATGATAGGCTTGTAGGAAATGT 58.096 33.333 0.00 0.00 0.00 2.71
3303 4890 8.902806 TGTTAAATGATAGGCTTGTAGGAAATG 58.097 33.333 0.00 0.00 0.00 2.32
3304 4891 9.646522 ATGTTAAATGATAGGCTTGTAGGAAAT 57.353 29.630 0.00 0.00 0.00 2.17
3305 4892 9.120538 GATGTTAAATGATAGGCTTGTAGGAAA 57.879 33.333 0.00 0.00 0.00 3.13
3306 4893 7.719633 GGATGTTAAATGATAGGCTTGTAGGAA 59.280 37.037 0.00 0.00 0.00 3.36
3307 4894 7.072454 AGGATGTTAAATGATAGGCTTGTAGGA 59.928 37.037 0.00 0.00 0.00 2.94
3308 4895 7.227156 AGGATGTTAAATGATAGGCTTGTAGG 58.773 38.462 0.00 0.00 0.00 3.18
3309 4896 7.389053 GGAGGATGTTAAATGATAGGCTTGTAG 59.611 40.741 0.00 0.00 0.00 2.74
3310 4897 7.224297 GGAGGATGTTAAATGATAGGCTTGTA 58.776 38.462 0.00 0.00 0.00 2.41
3311 4898 6.064717 GGAGGATGTTAAATGATAGGCTTGT 58.935 40.000 0.00 0.00 0.00 3.16
3312 4899 5.474876 GGGAGGATGTTAAATGATAGGCTTG 59.525 44.000 0.00 0.00 0.00 4.01
3313 4900 5.373854 AGGGAGGATGTTAAATGATAGGCTT 59.626 40.000 0.00 0.00 0.00 4.35
3314 4901 4.916424 AGGGAGGATGTTAAATGATAGGCT 59.084 41.667 0.00 0.00 0.00 4.58
3315 4902 5.221925 TGAGGGAGGATGTTAAATGATAGGC 60.222 44.000 0.00 0.00 0.00 3.93
3316 4903 6.439636 TGAGGGAGGATGTTAAATGATAGG 57.560 41.667 0.00 0.00 0.00 2.57
3317 4904 8.381636 AGATTGAGGGAGGATGTTAAATGATAG 58.618 37.037 0.00 0.00 0.00 2.08
3318 4905 8.280258 AGATTGAGGGAGGATGTTAAATGATA 57.720 34.615 0.00 0.00 0.00 2.15
3319 4906 7.159201 AGATTGAGGGAGGATGTTAAATGAT 57.841 36.000 0.00 0.00 0.00 2.45
3320 4907 6.581388 AGATTGAGGGAGGATGTTAAATGA 57.419 37.500 0.00 0.00 0.00 2.57
3321 4908 8.624776 GTTAAGATTGAGGGAGGATGTTAAATG 58.375 37.037 0.00 0.00 0.00 2.32
3322 4909 8.560903 AGTTAAGATTGAGGGAGGATGTTAAAT 58.439 33.333 0.00 0.00 0.00 1.40
3323 4910 7.928873 AGTTAAGATTGAGGGAGGATGTTAAA 58.071 34.615 0.00 0.00 0.00 1.52
3324 4911 7.182026 TGAGTTAAGATTGAGGGAGGATGTTAA 59.818 37.037 0.00 0.00 0.00 2.01
3325 4912 6.672218 TGAGTTAAGATTGAGGGAGGATGTTA 59.328 38.462 0.00 0.00 0.00 2.41
3326 4913 5.488919 TGAGTTAAGATTGAGGGAGGATGTT 59.511 40.000 0.00 0.00 0.00 2.71
3327 4914 5.032846 TGAGTTAAGATTGAGGGAGGATGT 58.967 41.667 0.00 0.00 0.00 3.06
3328 4915 5.620738 TGAGTTAAGATTGAGGGAGGATG 57.379 43.478 0.00 0.00 0.00 3.51
3329 4916 5.907662 TGATGAGTTAAGATTGAGGGAGGAT 59.092 40.000 0.00 0.00 0.00 3.24
3330 4917 5.280499 TGATGAGTTAAGATTGAGGGAGGA 58.720 41.667 0.00 0.00 0.00 3.71
3331 4918 5.620738 TGATGAGTTAAGATTGAGGGAGG 57.379 43.478 0.00 0.00 0.00 4.30
3332 4919 6.054295 CCTTGATGAGTTAAGATTGAGGGAG 58.946 44.000 0.00 0.00 0.00 4.30
3333 4920 5.488919 ACCTTGATGAGTTAAGATTGAGGGA 59.511 40.000 0.00 0.00 0.00 4.20
3334 4921 5.749462 ACCTTGATGAGTTAAGATTGAGGG 58.251 41.667 0.00 0.00 0.00 4.30
3335 4922 7.693969 AAACCTTGATGAGTTAAGATTGAGG 57.306 36.000 0.00 0.00 0.00 3.86
3336 4923 9.658799 TCTAAACCTTGATGAGTTAAGATTGAG 57.341 33.333 0.00 0.00 0.00 3.02
3340 4927 9.965902 ACAATCTAAACCTTGATGAGTTAAGAT 57.034 29.630 0.00 0.00 0.00 2.40
3341 4928 9.793259 AACAATCTAAACCTTGATGAGTTAAGA 57.207 29.630 0.00 0.00 0.00 2.10
3343 4930 9.793259 AGAACAATCTAAACCTTGATGAGTTAA 57.207 29.630 0.00 0.00 32.88 2.01
3344 4931 9.793259 AAGAACAATCTAAACCTTGATGAGTTA 57.207 29.630 0.00 0.00 33.77 2.24
3345 4932 8.571336 CAAGAACAATCTAAACCTTGATGAGTT 58.429 33.333 0.00 0.00 33.77 3.01
3346 4933 7.939039 TCAAGAACAATCTAAACCTTGATGAGT 59.061 33.333 0.00 0.00 36.21 3.41
3347 4934 8.327941 TCAAGAACAATCTAAACCTTGATGAG 57.672 34.615 0.00 0.00 36.21 2.90
3348 4935 8.690203 TTCAAGAACAATCTAAACCTTGATGA 57.310 30.769 0.00 0.00 39.45 2.92
3349 4936 8.025445 CCTTCAAGAACAATCTAAACCTTGATG 58.975 37.037 0.00 0.00 39.45 3.07
3350 4937 7.309438 GCCTTCAAGAACAATCTAAACCTTGAT 60.309 37.037 0.00 0.00 39.45 2.57
3351 4938 6.016276 GCCTTCAAGAACAATCTAAACCTTGA 60.016 38.462 0.00 0.00 38.42 3.02
3352 4939 6.015940 AGCCTTCAAGAACAATCTAAACCTTG 60.016 38.462 0.00 0.00 33.77 3.61
3353 4940 6.071320 AGCCTTCAAGAACAATCTAAACCTT 58.929 36.000 0.00 0.00 33.77 3.50
3354 4941 5.635120 AGCCTTCAAGAACAATCTAAACCT 58.365 37.500 0.00 0.00 33.77 3.50
3355 4942 5.966742 AGCCTTCAAGAACAATCTAAACC 57.033 39.130 0.00 0.00 33.77 3.27
3356 4943 6.970484 TCAAGCCTTCAAGAACAATCTAAAC 58.030 36.000 0.00 0.00 33.77 2.01
3357 4944 7.581213 TTCAAGCCTTCAAGAACAATCTAAA 57.419 32.000 0.00 0.00 33.77 1.85
3358 4945 7.285401 AGTTTCAAGCCTTCAAGAACAATCTAA 59.715 33.333 0.00 0.00 33.77 2.10
3359 4946 6.772716 AGTTTCAAGCCTTCAAGAACAATCTA 59.227 34.615 0.00 0.00 33.77 1.98
3360 4947 5.595952 AGTTTCAAGCCTTCAAGAACAATCT 59.404 36.000 0.00 0.00 37.57 2.40
3361 4948 5.689068 CAGTTTCAAGCCTTCAAGAACAATC 59.311 40.000 0.00 0.00 0.00 2.67
3362 4949 5.127682 ACAGTTTCAAGCCTTCAAGAACAAT 59.872 36.000 0.00 0.00 0.00 2.71
3363 4950 4.462483 ACAGTTTCAAGCCTTCAAGAACAA 59.538 37.500 0.00 0.00 0.00 2.83
3364 4951 4.016444 ACAGTTTCAAGCCTTCAAGAACA 58.984 39.130 0.00 0.00 0.00 3.18
3365 4952 4.602006 GACAGTTTCAAGCCTTCAAGAAC 58.398 43.478 0.00 0.00 0.00 3.01
3366 4953 3.312421 CGACAGTTTCAAGCCTTCAAGAA 59.688 43.478 0.00 0.00 0.00 2.52
3367 4954 2.872245 CGACAGTTTCAAGCCTTCAAGA 59.128 45.455 0.00 0.00 0.00 3.02
3368 4955 2.872245 TCGACAGTTTCAAGCCTTCAAG 59.128 45.455 0.00 0.00 0.00 3.02
3369 4956 2.912771 TCGACAGTTTCAAGCCTTCAA 58.087 42.857 0.00 0.00 0.00 2.69
3370 4957 2.613026 TCGACAGTTTCAAGCCTTCA 57.387 45.000 0.00 0.00 0.00 3.02
3371 4958 4.489679 AATTCGACAGTTTCAAGCCTTC 57.510 40.909 0.00 0.00 0.00 3.46
3372 4959 4.097892 ACAAATTCGACAGTTTCAAGCCTT 59.902 37.500 0.00 0.00 0.00 4.35
3373 4960 3.632145 ACAAATTCGACAGTTTCAAGCCT 59.368 39.130 0.00 0.00 0.00 4.58
3374 4961 3.964909 ACAAATTCGACAGTTTCAAGCC 58.035 40.909 0.00 0.00 0.00 4.35
3375 4962 6.142320 CCTTTACAAATTCGACAGTTTCAAGC 59.858 38.462 0.00 0.00 0.00 4.01
3376 4963 6.142320 GCCTTTACAAATTCGACAGTTTCAAG 59.858 38.462 0.00 0.00 0.00 3.02
3377 4964 5.974751 GCCTTTACAAATTCGACAGTTTCAA 59.025 36.000 0.00 0.00 0.00 2.69
3378 4965 5.298276 AGCCTTTACAAATTCGACAGTTTCA 59.702 36.000 0.00 0.00 0.00 2.69
3379 4966 5.758924 AGCCTTTACAAATTCGACAGTTTC 58.241 37.500 0.00 0.00 0.00 2.78
3380 4967 5.767816 AGCCTTTACAAATTCGACAGTTT 57.232 34.783 0.00 0.00 0.00 2.66
3381 4968 5.507315 CCAAGCCTTTACAAATTCGACAGTT 60.507 40.000 0.00 0.00 0.00 3.16
3382 4969 4.023193 CCAAGCCTTTACAAATTCGACAGT 60.023 41.667 0.00 0.00 0.00 3.55
3383 4970 4.023193 ACCAAGCCTTTACAAATTCGACAG 60.023 41.667 0.00 0.00 0.00 3.51
3384 4971 3.886505 ACCAAGCCTTTACAAATTCGACA 59.113 39.130 0.00 0.00 0.00 4.35
3385 4972 4.023536 TCACCAAGCCTTTACAAATTCGAC 60.024 41.667 0.00 0.00 0.00 4.20
3386 4973 4.138290 TCACCAAGCCTTTACAAATTCGA 58.862 39.130 0.00 0.00 0.00 3.71
3387 4974 4.497473 TCACCAAGCCTTTACAAATTCG 57.503 40.909 0.00 0.00 0.00 3.34
3388 4975 5.465390 GGTTTCACCAAGCCTTTACAAATTC 59.535 40.000 0.00 0.00 38.42 2.17
3389 4976 5.364778 GGTTTCACCAAGCCTTTACAAATT 58.635 37.500 0.00 0.00 38.42 1.82
3390 4977 4.956085 GGTTTCACCAAGCCTTTACAAAT 58.044 39.130 0.00 0.00 38.42 2.32
3391 4978 4.394439 GGTTTCACCAAGCCTTTACAAA 57.606 40.909 0.00 0.00 38.42 2.83
3400 4987 8.778468 TCAAGTTGTTGATGGTTTCACCAAGC 62.778 42.308 2.11 0.00 40.63 4.01
3401 4988 5.394005 TCAAGTTGTTGATGGTTTCACCAAG 60.394 40.000 2.11 0.00 40.63 3.61
3402 4989 4.464244 TCAAGTTGTTGATGGTTTCACCAA 59.536 37.500 2.11 0.00 40.63 3.67
3403 4990 4.019858 TCAAGTTGTTGATGGTTTCACCA 58.980 39.130 2.11 0.00 41.01 4.17
3404 4991 4.647424 TCAAGTTGTTGATGGTTTCACC 57.353 40.909 2.11 0.00 37.79 4.02
3415 5002 4.136796 TCCAACAGGAGATCAAGTTGTTG 58.863 43.478 17.97 17.97 44.92 3.33
3416 5003 4.437682 TCCAACAGGAGATCAAGTTGTT 57.562 40.909 2.11 0.00 39.63 2.83
3417 5004 4.437682 TTCCAACAGGAGATCAAGTTGT 57.562 40.909 2.11 3.62 39.63 3.32
3418 5005 5.005740 TCATTCCAACAGGAGATCAAGTTG 58.994 41.667 0.00 0.00 40.63 3.16
3419 5006 5.246981 TCATTCCAACAGGAGATCAAGTT 57.753 39.130 0.00 0.00 31.86 2.66
3420 5007 4.916041 TCATTCCAACAGGAGATCAAGT 57.084 40.909 0.00 0.00 31.86 3.16
3421 5008 5.123502 CAGTTCATTCCAACAGGAGATCAAG 59.876 44.000 0.00 0.00 31.86 3.02
3422 5009 5.005740 CAGTTCATTCCAACAGGAGATCAA 58.994 41.667 0.00 0.00 31.86 2.57
3423 5010 4.042062 ACAGTTCATTCCAACAGGAGATCA 59.958 41.667 0.00 0.00 31.86 2.92
3424 5011 4.583871 ACAGTTCATTCCAACAGGAGATC 58.416 43.478 0.00 0.00 31.86 2.75
3425 5012 4.647564 ACAGTTCATTCCAACAGGAGAT 57.352 40.909 0.00 0.00 31.86 2.75
3426 5013 5.485353 AGATACAGTTCATTCCAACAGGAGA 59.515 40.000 0.00 0.00 31.86 3.71
3427 5014 5.738909 AGATACAGTTCATTCCAACAGGAG 58.261 41.667 0.00 0.00 31.86 3.69
3428 5015 5.485353 AGAGATACAGTTCATTCCAACAGGA 59.515 40.000 0.00 0.00 0.00 3.86
3429 5016 5.738909 AGAGATACAGTTCATTCCAACAGG 58.261 41.667 0.00 0.00 0.00 4.00
3430 5017 8.954950 ATTAGAGATACAGTTCATTCCAACAG 57.045 34.615 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.