Multiple sequence alignment - TraesCS2B01G024300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G024300 chr2B 100.000 3232 0 0 1 3232 11235954 11239185 0.000000e+00 5969.0
1 TraesCS2B01G024300 chr2B 100.000 60 0 0 3520 3579 11239473 11239532 1.050000e-20 111.0
2 TraesCS2B01G024300 chr2B 96.970 33 1 0 2342 2374 95954415 95954383 4.990000e-04 56.5
3 TraesCS2B01G024300 chr2A 91.501 1506 80 28 688 2172 7525938 7527416 0.000000e+00 2028.0
4 TraesCS2B01G024300 chr2A 87.558 434 36 4 212 630 7525371 7525801 1.490000e-133 486.0
5 TraesCS2B01G024300 chr2A 92.857 196 12 2 1 194 7525189 7525384 2.100000e-72 283.0
6 TraesCS2B01G024300 chr2A 88.732 142 16 0 2263 2404 7527493 7527634 1.320000e-39 174.0
7 TraesCS2B01G024300 chr2A 88.722 133 14 1 3100 3232 112752684 112752815 1.030000e-35 161.0
8 TraesCS2B01G024300 chr2D 88.408 1501 72 35 747 2172 8486079 8487552 0.000000e+00 1714.0
9 TraesCS2B01G024300 chr2D 85.902 610 50 17 2476 3054 8487760 8488364 5.080000e-173 617.0
10 TraesCS2B01G024300 chr2D 91.500 200 11 5 1 195 8485248 8485446 1.640000e-68 270.0
11 TraesCS2B01G024300 chr2D 92.481 133 10 0 2262 2394 8487628 8487760 1.310000e-44 191.0
12 TraesCS2B01G024300 chr2D 94.595 37 2 0 2342 2378 61272551 61272515 1.390000e-04 58.4
13 TraesCS2B01G024300 chr2D 94.595 37 2 0 2342 2378 61300339 61300303 1.390000e-04 58.4
14 TraesCS2B01G024300 chr7D 90.840 131 10 2 3103 3232 549542028 549541899 1.320000e-39 174.0
15 TraesCS2B01G024300 chr7D 97.222 36 1 0 2339 2374 52689749 52689784 1.070000e-05 62.1
16 TraesCS2B01G024300 chr4B 91.045 134 5 4 3100 3232 545173779 545173652 1.320000e-39 174.0
17 TraesCS2B01G024300 chr5A 88.288 111 6 3 3099 3209 465123164 465123267 3.750000e-25 126.0
18 TraesCS2B01G024300 chr5A 93.750 48 1 2 3097 3143 465121563 465121609 1.780000e-08 71.3
19 TraesCS2B01G024300 chr5A 97.297 37 0 1 699 734 640617148 640617112 1.070000e-05 62.1
20 TraesCS2B01G024300 chr1A 100.000 34 0 0 2345 2378 503290655 503290622 2.980000e-06 63.9
21 TraesCS2B01G024300 chr7A 100.000 33 0 0 2346 2378 334811 334843 1.070000e-05 62.1
22 TraesCS2B01G024300 chr1B 100.000 33 0 0 2346 2378 6383022 6382990 1.070000e-05 62.1
23 TraesCS2B01G024300 chr5D 100.000 28 0 0 1267 1294 358223427 358223400 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G024300 chr2B 11235954 11239532 3578 False 3040.00 5969 100.00000 1 3579 2 chr2B.!!$F1 3578
1 TraesCS2B01G024300 chr2A 7525189 7527634 2445 False 742.75 2028 90.16200 1 2404 4 chr2A.!!$F2 2403
2 TraesCS2B01G024300 chr2D 8485248 8488364 3116 False 698.00 1714 89.57275 1 3054 4 chr2D.!!$F1 3053

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
666 934 0.523335 GGCAAATCGAACGTCATGGC 60.523 55.0 0.0 0.0 0.0 4.40 F
1985 2415 0.178767 TGCCGCTCGTACTACTCCTA 59.821 55.0 0.0 0.0 0.0 2.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2444 2937 0.250727 CCTGGTCGCTCCCAAAAGAA 60.251 55.0 0.0 0.0 33.07 2.52 R
3106 3630 0.179062 CCAGCTCACCACATAGCTCC 60.179 60.0 0.0 0.0 45.92 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
127 132 1.069204 GGTCTGACTGCTCACAAGTCA 59.931 52.381 7.85 6.15 39.85 3.41
130 135 2.229675 TGACTGCTCACAAGTCAGTG 57.770 50.000 2.24 0.00 38.87 3.66
144 150 7.602644 TCACAAGTCAGTGGATATCTTTTACAC 59.397 37.037 2.05 1.99 39.93 2.90
145 151 6.590292 ACAAGTCAGTGGATATCTTTTACACG 59.410 38.462 2.05 0.04 37.16 4.49
146 152 5.109903 AGTCAGTGGATATCTTTTACACGC 58.890 41.667 2.05 0.00 37.16 5.34
156 163 4.325028 TCTTTTACACGCCAGTCAACTA 57.675 40.909 0.00 0.00 0.00 2.24
171 178 7.413657 GCCAGTCAACTAGAATATTTTTACGCA 60.414 37.037 0.00 0.00 0.00 5.24
256 487 7.746475 CGAGTGGAAATTTCTTACAAATCAGTC 59.254 37.037 17.42 13.87 0.00 3.51
312 546 2.240493 AACACACCAGAGGAAAGACG 57.760 50.000 0.00 0.00 0.00 4.18
468 732 4.495844 GCTACCGTAGATTGAAAATGCACC 60.496 45.833 9.88 0.00 0.00 5.01
566 834 0.767375 AGAGCTCACTGGCAGGAAAA 59.233 50.000 20.34 0.00 34.17 2.29
598 866 2.158957 TCTACCGATGTCCAGCAAATCC 60.159 50.000 0.00 0.00 0.00 3.01
612 880 6.549364 TCCAGCAAATCCGTTATATTTTGGAT 59.451 34.615 0.00 0.00 42.93 3.41
622 890 8.152246 TCCGTTATATTTTGGATTCGAATACCT 58.848 33.333 17.76 2.90 0.00 3.08
630 898 7.786178 TTTGGATTCGAATACCTAGTGAATG 57.214 36.000 17.76 0.00 29.93 2.67
631 899 6.479972 TGGATTCGAATACCTAGTGAATGT 57.520 37.500 17.76 0.00 29.93 2.71
632 900 6.884832 TGGATTCGAATACCTAGTGAATGTT 58.115 36.000 17.76 0.00 29.93 2.71
633 901 8.014070 TGGATTCGAATACCTAGTGAATGTTA 57.986 34.615 17.76 0.00 29.93 2.41
634 902 8.141909 TGGATTCGAATACCTAGTGAATGTTAG 58.858 37.037 17.76 0.00 29.93 2.34
636 904 9.915629 GATTCGAATACCTAGTGAATGTTAGAT 57.084 33.333 11.38 0.00 29.93 1.98
644 912 8.507524 ACCTAGTGAATGTTAGATTTTTAGCC 57.492 34.615 0.00 0.00 0.00 3.93
645 913 8.107095 ACCTAGTGAATGTTAGATTTTTAGCCA 58.893 33.333 0.00 0.00 0.00 4.75
646 914 9.125026 CCTAGTGAATGTTAGATTTTTAGCCAT 57.875 33.333 0.00 0.00 0.00 4.40
647 915 9.941664 CTAGTGAATGTTAGATTTTTAGCCATG 57.058 33.333 0.00 0.00 0.00 3.66
648 916 7.775120 AGTGAATGTTAGATTTTTAGCCATGG 58.225 34.615 7.63 7.63 0.00 3.66
649 917 6.476706 GTGAATGTTAGATTTTTAGCCATGGC 59.523 38.462 30.12 30.12 42.33 4.40
650 918 6.154192 TGAATGTTAGATTTTTAGCCATGGCA 59.846 34.615 37.18 20.88 44.88 4.92
651 919 5.991933 TGTTAGATTTTTAGCCATGGCAA 57.008 34.783 37.18 25.09 44.88 4.52
652 920 6.352016 TGTTAGATTTTTAGCCATGGCAAA 57.648 33.333 37.18 28.66 44.88 3.68
653 921 6.945218 TGTTAGATTTTTAGCCATGGCAAAT 58.055 32.000 37.18 30.60 44.88 2.32
654 922 7.041107 TGTTAGATTTTTAGCCATGGCAAATC 58.959 34.615 33.40 33.40 44.88 2.17
655 923 4.685924 AGATTTTTAGCCATGGCAAATCG 58.314 39.130 33.46 6.87 41.62 3.34
656 924 4.402155 AGATTTTTAGCCATGGCAAATCGA 59.598 37.500 33.46 22.46 41.62 3.59
657 925 4.527509 TTTTTAGCCATGGCAAATCGAA 57.472 36.364 37.18 21.05 44.88 3.71
658 926 3.502191 TTTAGCCATGGCAAATCGAAC 57.498 42.857 37.18 5.77 44.88 3.95
659 927 1.013596 TAGCCATGGCAAATCGAACG 58.986 50.000 37.18 0.00 44.88 3.95
666 934 0.523335 GGCAAATCGAACGTCATGGC 60.523 55.000 0.00 0.00 0.00 4.40
673 941 5.499139 AATCGAACGTCATGGCAAATTAT 57.501 34.783 0.00 0.00 0.00 1.28
674 942 4.955925 TCGAACGTCATGGCAAATTATT 57.044 36.364 0.00 0.00 0.00 1.40
675 943 5.303747 TCGAACGTCATGGCAAATTATTT 57.696 34.783 0.00 0.00 0.00 1.40
677 945 6.153067 TCGAACGTCATGGCAAATTATTTTT 58.847 32.000 0.00 0.00 0.00 1.94
678 946 7.306213 TCGAACGTCATGGCAAATTATTTTTA 58.694 30.769 0.00 0.00 0.00 1.52
680 948 7.462200 CGAACGTCATGGCAAATTATTTTTACC 60.462 37.037 0.00 0.00 0.00 2.85
681 949 5.802956 ACGTCATGGCAAATTATTTTTACCG 59.197 36.000 0.00 0.00 0.00 4.02
684 952 6.475402 GTCATGGCAAATTATTTTTACCGAGG 59.525 38.462 0.00 0.00 0.00 4.63
685 953 5.331876 TGGCAAATTATTTTTACCGAGGG 57.668 39.130 0.00 0.00 0.00 4.30
687 955 5.106442 GGCAAATTATTTTTACCGAGGGTG 58.894 41.667 0.00 0.00 36.19 4.61
688 956 5.105675 GGCAAATTATTTTTACCGAGGGTGA 60.106 40.000 0.00 0.00 36.19 4.02
692 1057 9.730420 CAAATTATTTTTACCGAGGGTGATAAG 57.270 33.333 0.00 0.00 36.19 1.73
699 1064 2.094338 ACCGAGGGTGATAAGAACGTTC 60.094 50.000 20.71 20.71 32.98 3.95
719 1084 5.122082 CGTTCAATTTGCCATGCCTAAAAAT 59.878 36.000 0.00 0.00 0.00 1.82
724 1089 5.938438 TTTGCCATGCCTAAAAATTTGAC 57.062 34.783 0.00 0.00 0.00 3.18
725 1090 4.613925 TGCCATGCCTAAAAATTTGACA 57.386 36.364 0.00 0.00 0.00 3.58
727 1092 5.177326 TGCCATGCCTAAAAATTTGACATC 58.823 37.500 0.00 0.00 0.00 3.06
729 1097 5.292589 GCCATGCCTAAAAATTTGACATCAG 59.707 40.000 0.00 0.00 0.00 2.90
732 1100 7.767198 CCATGCCTAAAAATTTGACATCAGATT 59.233 33.333 0.00 0.00 32.82 2.40
804 1173 2.417586 GCCCTGCTTCAATCATTTTTGC 59.582 45.455 0.00 0.00 0.00 3.68
809 1178 5.163794 CCTGCTTCAATCATTTTTGCCAATC 60.164 40.000 0.00 0.00 0.00 2.67
815 1184 7.563888 TCAATCATTTTTGCCAATCAAACAA 57.436 28.000 0.00 0.00 43.76 2.83
905 1296 2.768253 TACATCCAGCACACCTTCTG 57.232 50.000 0.00 0.00 0.00 3.02
984 1378 8.785329 TCAAAAATAAACACCAAAGAAAGCTT 57.215 26.923 0.00 0.00 35.37 3.74
1011 1405 8.958506 AGAAAGAGATCGTGTGTATATATACCC 58.041 37.037 18.20 9.10 32.33 3.69
1012 1406 8.645814 AAAGAGATCGTGTGTATATATACCCA 57.354 34.615 18.20 11.52 32.33 4.51
1013 1407 7.867305 AGAGATCGTGTGTATATATACCCAG 57.133 40.000 18.20 8.70 32.33 4.45
1014 1408 6.829298 AGAGATCGTGTGTATATATACCCAGG 59.171 42.308 18.20 17.56 31.05 4.45
1015 1409 5.360144 AGATCGTGTGTATATATACCCAGGC 59.640 44.000 18.20 8.36 30.30 4.85
1016 1410 4.409187 TCGTGTGTATATATACCCAGGCA 58.591 43.478 18.20 8.20 30.30 4.75
1017 1411 4.219070 TCGTGTGTATATATACCCAGGCAC 59.781 45.833 18.20 16.00 30.30 5.01
1018 1412 4.021807 CGTGTGTATATATACCCAGGCACA 60.022 45.833 18.20 12.30 33.90 4.57
1019 1413 5.235516 GTGTGTATATATACCCAGGCACAC 58.764 45.833 18.20 18.41 45.12 3.82
1106 1503 2.902486 TCATCCCATCATCCTCACTAGC 59.098 50.000 0.00 0.00 0.00 3.42
1130 1527 5.234116 CAGCACACATTTCTAAACCCAAAAC 59.766 40.000 0.00 0.00 0.00 2.43
1131 1528 4.509970 GCACACATTTCTAAACCCAAAACC 59.490 41.667 0.00 0.00 0.00 3.27
1136 1533 1.984066 TCTAAACCCAAAACCACCCG 58.016 50.000 0.00 0.00 0.00 5.28
1557 1957 4.423209 GGGGCTGGGAGGAGGAGT 62.423 72.222 0.00 0.00 0.00 3.85
1792 2207 1.033746 CCGACGGCAACTACTCCCTA 61.034 60.000 0.00 0.00 0.00 3.53
1795 2210 1.340568 GACGGCAACTACTCCCTATCC 59.659 57.143 0.00 0.00 0.00 2.59
1799 2214 2.679082 GCAACTACTCCCTATCCTCCA 58.321 52.381 0.00 0.00 0.00 3.86
1948 2378 2.683859 CGTGCCATGCAGACCACTG 61.684 63.158 10.43 0.00 45.91 3.66
1952 2382 0.393402 GCCATGCAGACCACTGATGA 60.393 55.000 0.00 0.00 46.03 2.92
1953 2383 1.664873 CCATGCAGACCACTGATGAG 58.335 55.000 0.00 0.00 46.03 2.90
1955 2385 2.617276 CCATGCAGACCACTGATGAGTT 60.617 50.000 0.00 0.00 46.03 3.01
1957 2387 2.771089 TGCAGACCACTGATGAGTTTC 58.229 47.619 0.00 0.00 46.03 2.78
1960 2390 3.306641 GCAGACCACTGATGAGTTTCTCT 60.307 47.826 0.00 0.00 46.03 3.10
1961 2391 4.081972 GCAGACCACTGATGAGTTTCTCTA 60.082 45.833 0.00 0.00 46.03 2.43
1973 2403 2.159170 AGTTTCTCTATCACTGCCGCTC 60.159 50.000 0.00 0.00 0.00 5.03
1981 2411 0.675837 TCACTGCCGCTCGTACTACT 60.676 55.000 0.00 0.00 0.00 2.57
1982 2412 0.248134 CACTGCCGCTCGTACTACTC 60.248 60.000 0.00 0.00 0.00 2.59
1983 2413 1.355916 CTGCCGCTCGTACTACTCC 59.644 63.158 0.00 0.00 0.00 3.85
1984 2414 1.077930 TGCCGCTCGTACTACTCCT 60.078 57.895 0.00 0.00 0.00 3.69
1985 2415 0.178767 TGCCGCTCGTACTACTCCTA 59.821 55.000 0.00 0.00 0.00 2.94
1986 2416 0.585838 GCCGCTCGTACTACTCCTAC 59.414 60.000 0.00 0.00 0.00 3.18
1987 2417 1.809651 GCCGCTCGTACTACTCCTACT 60.810 57.143 0.00 0.00 0.00 2.57
1988 2418 2.546795 GCCGCTCGTACTACTCCTACTA 60.547 54.545 0.00 0.00 0.00 1.82
1989 2419 3.056304 CCGCTCGTACTACTCCTACTAC 58.944 54.545 0.00 0.00 0.00 2.73
1991 2421 3.491619 CGCTCGTACTACTCCTACTACCA 60.492 52.174 0.00 0.00 0.00 3.25
1992 2422 3.807071 GCTCGTACTACTCCTACTACCAC 59.193 52.174 0.00 0.00 0.00 4.16
1993 2423 4.046938 TCGTACTACTCCTACTACCACG 57.953 50.000 0.00 0.00 0.00 4.94
1994 2424 3.126831 CGTACTACTCCTACTACCACGG 58.873 54.545 0.00 0.00 0.00 4.94
1995 2425 3.430929 CGTACTACTCCTACTACCACGGT 60.431 52.174 0.00 0.00 0.00 4.83
1996 2426 2.996631 ACTACTCCTACTACCACGGTG 58.003 52.381 0.00 0.00 0.00 4.94
2069 2524 8.290325 GGTGATTAATTAGTAATTAGCTGGTGC 58.710 37.037 13.64 4.65 34.80 5.01
2098 2553 8.181573 GTGTGTGGTGTAGTATCAAATAATTGG 58.818 37.037 0.00 0.00 37.15 3.16
2129 2584 7.915397 GCCTGGTTAATCTGTGTGTAATAATTG 59.085 37.037 0.00 0.00 0.00 2.32
2130 2585 8.956426 CCTGGTTAATCTGTGTGTAATAATTGT 58.044 33.333 0.00 0.00 0.00 2.71
2149 2605 3.295093 TGTTGAAAGTGGGCAAAGATGA 58.705 40.909 0.00 0.00 0.00 2.92
2175 2631 3.406764 ACTTTGTCAGTGAGAGGAATGC 58.593 45.455 0.00 0.00 32.83 3.56
2176 2632 3.181451 ACTTTGTCAGTGAGAGGAATGCA 60.181 43.478 0.00 0.00 32.83 3.96
2177 2633 3.708403 TTGTCAGTGAGAGGAATGCAT 57.292 42.857 0.00 0.00 0.00 3.96
2178 2634 4.824479 TTGTCAGTGAGAGGAATGCATA 57.176 40.909 0.00 0.00 0.00 3.14
2179 2635 5.363562 TTGTCAGTGAGAGGAATGCATAT 57.636 39.130 0.00 0.00 0.00 1.78
2180 2636 6.484364 TTGTCAGTGAGAGGAATGCATATA 57.516 37.500 0.00 0.00 0.00 0.86
2182 2638 6.461640 TGTCAGTGAGAGGAATGCATATATG 58.538 40.000 8.45 8.45 0.00 1.78
2183 2639 6.042437 TGTCAGTGAGAGGAATGCATATATGT 59.958 38.462 14.14 0.00 0.00 2.29
2184 2640 6.368243 GTCAGTGAGAGGAATGCATATATGTG 59.632 42.308 14.14 0.00 0.00 3.21
2185 2641 6.042437 TCAGTGAGAGGAATGCATATATGTGT 59.958 38.462 14.14 0.81 0.00 3.72
2186 2642 6.147328 CAGTGAGAGGAATGCATATATGTGTG 59.853 42.308 14.14 0.00 0.00 3.82
2187 2643 5.994054 GTGAGAGGAATGCATATATGTGTGT 59.006 40.000 14.14 0.00 0.00 3.72
2188 2644 5.993441 TGAGAGGAATGCATATATGTGTGTG 59.007 40.000 14.14 0.00 0.00 3.82
2189 2645 5.311265 AGAGGAATGCATATATGTGTGTGG 58.689 41.667 14.14 0.00 0.00 4.17
2190 2646 5.072193 AGAGGAATGCATATATGTGTGTGGA 59.928 40.000 14.14 0.00 0.00 4.02
2191 2647 5.884322 AGGAATGCATATATGTGTGTGGAT 58.116 37.500 14.14 0.00 0.00 3.41
2192 2648 6.309357 AGGAATGCATATATGTGTGTGGATT 58.691 36.000 14.14 1.71 35.71 3.01
2193 2649 6.779049 AGGAATGCATATATGTGTGTGGATTT 59.221 34.615 14.14 0.00 33.63 2.17
2194 2650 6.864685 GGAATGCATATATGTGTGTGGATTTG 59.135 38.462 14.14 0.00 33.63 2.32
2195 2651 6.964807 ATGCATATATGTGTGTGGATTTGT 57.035 33.333 14.14 0.00 0.00 2.83
2196 2652 6.134040 TGCATATATGTGTGTGGATTTGTG 57.866 37.500 14.14 0.00 0.00 3.33
2197 2653 5.651576 TGCATATATGTGTGTGGATTTGTGT 59.348 36.000 14.14 0.00 0.00 3.72
2198 2654 5.972973 GCATATATGTGTGTGGATTTGTGTG 59.027 40.000 14.14 0.00 0.00 3.82
2199 2655 6.497437 CATATATGTGTGTGGATTTGTGTGG 58.503 40.000 4.43 0.00 0.00 4.17
2200 2656 2.136298 TGTGTGTGGATTTGTGTGGT 57.864 45.000 0.00 0.00 0.00 4.16
2201 2657 3.283259 TGTGTGTGGATTTGTGTGGTA 57.717 42.857 0.00 0.00 0.00 3.25
2202 2658 2.946329 TGTGTGTGGATTTGTGTGGTAC 59.054 45.455 0.00 0.00 0.00 3.34
2203 2659 3.211045 GTGTGTGGATTTGTGTGGTACT 58.789 45.455 0.00 0.00 0.00 2.73
2204 2660 4.141688 TGTGTGTGGATTTGTGTGGTACTA 60.142 41.667 0.00 0.00 0.00 1.82
2205 2661 4.451096 GTGTGTGGATTTGTGTGGTACTAG 59.549 45.833 0.00 0.00 0.00 2.57
2206 2662 4.101898 TGTGTGGATTTGTGTGGTACTAGT 59.898 41.667 0.00 0.00 0.00 2.57
2207 2663 5.304871 TGTGTGGATTTGTGTGGTACTAGTA 59.695 40.000 0.00 0.00 0.00 1.82
2208 2664 5.867716 GTGTGGATTTGTGTGGTACTAGTAG 59.132 44.000 1.87 0.00 0.00 2.57
2209 2665 5.541101 TGTGGATTTGTGTGGTACTAGTAGT 59.459 40.000 8.14 8.14 0.00 2.73
2210 2666 6.720748 TGTGGATTTGTGTGGTACTAGTAGTA 59.279 38.462 5.90 5.90 0.00 1.82
2225 2681 7.793948 ACTAGTAGTACATTCAGTTTTCCCT 57.206 36.000 0.00 0.00 0.00 4.20
2226 2682 7.838884 ACTAGTAGTACATTCAGTTTTCCCTC 58.161 38.462 0.00 0.00 0.00 4.30
2227 2683 6.681729 AGTAGTACATTCAGTTTTCCCTCA 57.318 37.500 2.52 0.00 0.00 3.86
2228 2684 7.074653 AGTAGTACATTCAGTTTTCCCTCAA 57.925 36.000 2.52 0.00 0.00 3.02
2229 2685 7.514721 AGTAGTACATTCAGTTTTCCCTCAAA 58.485 34.615 2.52 0.00 0.00 2.69
2230 2686 7.996644 AGTAGTACATTCAGTTTTCCCTCAAAA 59.003 33.333 2.52 0.00 0.00 2.44
2231 2687 7.654022 AGTACATTCAGTTTTCCCTCAAAAA 57.346 32.000 0.00 0.00 35.68 1.94
2259 2715 9.515226 AAAAGTAGTATATGTGTGTGGATTTGT 57.485 29.630 0.00 0.00 0.00 2.83
2260 2716 8.492673 AAGTAGTATATGTGTGTGGATTTGTG 57.507 34.615 0.00 0.00 0.00 3.33
2313 2806 2.049063 AGCACTCACGTCCTTCGC 60.049 61.111 0.00 0.00 44.19 4.70
2334 2827 0.738975 CAAGGTGATGAGCATGGCTG 59.261 55.000 0.00 0.00 39.88 4.85
2360 2853 4.374828 GTGCGTTTGAACTAAAATCACGAC 59.625 41.667 0.00 0.00 0.00 4.34
2379 2872 6.483307 TCACGACAAGAATTATGGAATGGATC 59.517 38.462 0.00 0.00 0.00 3.36
2384 2877 8.004087 ACAAGAATTATGGAATGGATCAAGTG 57.996 34.615 0.00 0.00 0.00 3.16
2385 2878 7.616935 ACAAGAATTATGGAATGGATCAAGTGT 59.383 33.333 0.00 0.00 0.00 3.55
2394 2887 8.877864 TGGAATGGATCAAGTGTAAAATAAGT 57.122 30.769 0.00 0.00 0.00 2.24
2395 2888 8.956426 TGGAATGGATCAAGTGTAAAATAAGTC 58.044 33.333 0.00 0.00 0.00 3.01
2396 2889 8.956426 GGAATGGATCAAGTGTAAAATAAGTCA 58.044 33.333 0.00 0.00 0.00 3.41
2397 2890 9.774742 GAATGGATCAAGTGTAAAATAAGTCAC 57.225 33.333 0.00 0.00 0.00 3.67
2398 2891 7.681939 TGGATCAAGTGTAAAATAAGTCACC 57.318 36.000 0.00 0.00 0.00 4.02
2399 2892 6.657541 TGGATCAAGTGTAAAATAAGTCACCC 59.342 38.462 0.00 0.00 0.00 4.61
2400 2893 6.884836 GGATCAAGTGTAAAATAAGTCACCCT 59.115 38.462 0.00 0.00 0.00 4.34
2401 2894 7.393515 GGATCAAGTGTAAAATAAGTCACCCTT 59.606 37.037 0.00 0.00 37.17 3.95
2402 2895 8.706322 ATCAAGTGTAAAATAAGTCACCCTTT 57.294 30.769 0.00 0.00 34.46 3.11
2403 2896 7.936584 TCAAGTGTAAAATAAGTCACCCTTTG 58.063 34.615 0.00 0.00 34.46 2.77
2404 2897 7.558444 TCAAGTGTAAAATAAGTCACCCTTTGT 59.442 33.333 0.00 0.00 34.46 2.83
2405 2898 7.891498 AGTGTAAAATAAGTCACCCTTTGTT 57.109 32.000 0.00 0.00 34.46 2.83
2406 2899 8.983702 AGTGTAAAATAAGTCACCCTTTGTTA 57.016 30.769 0.00 0.00 34.46 2.41
2407 2900 8.843262 AGTGTAAAATAAGTCACCCTTTGTTAC 58.157 33.333 0.00 0.00 34.46 2.50
2408 2901 7.799914 GTGTAAAATAAGTCACCCTTTGTTACG 59.200 37.037 0.00 0.00 34.46 3.18
2409 2902 7.714377 TGTAAAATAAGTCACCCTTTGTTACGA 59.286 33.333 0.00 0.00 34.46 3.43
2410 2903 6.549912 AAATAAGTCACCCTTTGTTACGAC 57.450 37.500 0.00 0.00 34.46 4.34
2411 2904 2.144482 AGTCACCCTTTGTTACGACG 57.856 50.000 0.00 0.00 0.00 5.12
2412 2905 1.682854 AGTCACCCTTTGTTACGACGA 59.317 47.619 0.00 0.00 0.00 4.20
2413 2906 2.298163 AGTCACCCTTTGTTACGACGAT 59.702 45.455 0.00 0.00 0.00 3.73
2414 2907 3.062042 GTCACCCTTTGTTACGACGATT 58.938 45.455 0.00 0.00 0.00 3.34
2415 2908 3.495753 GTCACCCTTTGTTACGACGATTT 59.504 43.478 0.00 0.00 0.00 2.17
2416 2909 4.024641 GTCACCCTTTGTTACGACGATTTT 60.025 41.667 0.00 0.00 0.00 1.82
2417 2910 5.177327 GTCACCCTTTGTTACGACGATTTTA 59.823 40.000 0.00 0.00 0.00 1.52
2418 2911 5.757320 TCACCCTTTGTTACGACGATTTTAA 59.243 36.000 0.00 0.00 0.00 1.52
2419 2912 6.427547 TCACCCTTTGTTACGACGATTTTAAT 59.572 34.615 0.00 0.00 0.00 1.40
2420 2913 7.041235 TCACCCTTTGTTACGACGATTTTAATT 60.041 33.333 0.00 0.00 0.00 1.40
2421 2914 7.592164 CACCCTTTGTTACGACGATTTTAATTT 59.408 33.333 0.00 0.00 0.00 1.82
2422 2915 7.592164 ACCCTTTGTTACGACGATTTTAATTTG 59.408 33.333 0.00 0.00 0.00 2.32
2423 2916 7.804129 CCCTTTGTTACGACGATTTTAATTTGA 59.196 33.333 0.00 0.00 0.00 2.69
2424 2917 9.171701 CCTTTGTTACGACGATTTTAATTTGAA 57.828 29.630 0.00 0.00 0.00 2.69
2427 2920 9.880064 TTGTTACGACGATTTTAATTTGAATGA 57.120 25.926 0.00 0.00 0.00 2.57
2430 2923 9.710979 TTACGACGATTTTAATTTGAATGATCC 57.289 29.630 0.00 0.00 0.00 3.36
2431 2924 7.757526 ACGACGATTTTAATTTGAATGATCCA 58.242 30.769 0.00 0.00 0.00 3.41
2432 2925 8.405531 ACGACGATTTTAATTTGAATGATCCAT 58.594 29.630 0.00 0.00 0.00 3.41
2433 2926 9.877137 CGACGATTTTAATTTGAATGATCCATA 57.123 29.630 0.00 0.00 0.00 2.74
2453 2946 9.759473 ATCCATATTCCATAGTATTCTTTTGGG 57.241 33.333 0.00 0.00 0.00 4.12
2454 2947 8.954729 TCCATATTCCATAGTATTCTTTTGGGA 58.045 33.333 0.00 0.00 0.00 4.37
2455 2948 9.236006 CCATATTCCATAGTATTCTTTTGGGAG 57.764 37.037 0.00 0.00 0.00 4.30
2456 2949 8.734386 CATATTCCATAGTATTCTTTTGGGAGC 58.266 37.037 0.00 0.00 0.00 4.70
2457 2950 4.703897 TCCATAGTATTCTTTTGGGAGCG 58.296 43.478 0.00 0.00 0.00 5.03
2458 2951 4.407621 TCCATAGTATTCTTTTGGGAGCGA 59.592 41.667 0.00 0.00 0.00 4.93
2459 2952 4.511826 CCATAGTATTCTTTTGGGAGCGAC 59.488 45.833 0.00 0.00 0.00 5.19
2460 2953 2.987232 AGTATTCTTTTGGGAGCGACC 58.013 47.619 0.00 0.00 38.08 4.79
2461 2954 2.304761 AGTATTCTTTTGGGAGCGACCA 59.695 45.455 0.00 0.00 41.20 4.02
2462 2955 1.826385 ATTCTTTTGGGAGCGACCAG 58.174 50.000 2.69 0.00 42.47 4.00
2463 2956 0.250727 TTCTTTTGGGAGCGACCAGG 60.251 55.000 2.69 0.00 42.47 4.45
2464 2957 1.675641 CTTTTGGGAGCGACCAGGG 60.676 63.158 2.69 0.00 42.47 4.45
2465 2958 2.124507 CTTTTGGGAGCGACCAGGGA 62.125 60.000 2.69 0.00 42.47 4.20
2466 2959 1.497309 TTTTGGGAGCGACCAGGGAT 61.497 55.000 2.69 0.00 42.47 3.85
2467 2960 1.497309 TTTGGGAGCGACCAGGGATT 61.497 55.000 2.69 0.00 42.47 3.01
2468 2961 1.497309 TTGGGAGCGACCAGGGATTT 61.497 55.000 2.69 0.00 42.47 2.17
2469 2962 1.153147 GGGAGCGACCAGGGATTTC 60.153 63.158 5.45 0.00 41.20 2.17
2470 2963 1.627297 GGGAGCGACCAGGGATTTCT 61.627 60.000 5.45 0.00 41.20 2.52
2471 2964 0.253327 GGAGCGACCAGGGATTTCTT 59.747 55.000 0.00 0.00 38.79 2.52
2472 2965 1.340114 GGAGCGACCAGGGATTTCTTT 60.340 52.381 0.00 0.00 38.79 2.52
2473 2966 2.437413 GAGCGACCAGGGATTTCTTTT 58.563 47.619 0.00 0.00 0.00 2.27
2474 2967 2.820197 GAGCGACCAGGGATTTCTTTTT 59.180 45.455 0.00 0.00 0.00 1.94
2502 2995 1.395954 GCGACGAGGGAATTAACCAAC 59.604 52.381 0.00 0.00 0.00 3.77
2607 3100 4.398988 TCTTGCATGGATTCCATTGTACAC 59.601 41.667 15.75 2.71 42.23 2.90
2634 3127 5.927030 GTCAATTTGACGTTGAGAATAGCA 58.073 37.500 13.42 0.00 37.67 3.49
2637 3130 6.855914 TCAATTTGACGTTGAGAATAGCAAAC 59.144 34.615 0.00 0.00 32.23 2.93
2673 3190 1.206849 TGCGGATGTCTCATGTAAGCA 59.793 47.619 0.00 0.00 0.00 3.91
2680 3197 3.674997 TGTCTCATGTAAGCACCCTTTC 58.325 45.455 0.00 0.00 32.47 2.62
2683 3200 3.840666 TCTCATGTAAGCACCCTTTCTCT 59.159 43.478 0.00 0.00 32.47 3.10
2771 3293 1.884235 GAGGAAATGCCCCTCGTATG 58.116 55.000 0.00 0.00 40.58 2.39
2799 3321 3.999663 CCTCAAGAAGTGGTCTTTAGCAG 59.000 47.826 0.00 0.00 44.64 4.24
2817 3339 3.921021 AGCAGTTGTTCTAGAATTCGACG 59.079 43.478 8.75 5.11 0.00 5.12
2837 3359 6.485313 TCGACGGCATAAATCCAAAATATTCT 59.515 34.615 0.00 0.00 0.00 2.40
2839 3361 6.748132 ACGGCATAAATCCAAAATATTCTGG 58.252 36.000 0.92 0.92 0.00 3.86
2847 3369 5.643379 TCCAAAATATTCTGGACAAGTGC 57.357 39.130 6.40 0.00 36.79 4.40
2881 3404 5.768662 TGGGTGAGATAATAGAGACCGTTAG 59.231 44.000 0.00 0.00 0.00 2.34
2919 3442 8.494016 ACTAGACAATAAGTGACATAAAAGCC 57.506 34.615 0.00 0.00 0.00 4.35
2921 3444 4.981794 ACAATAAGTGACATAAAAGCCGC 58.018 39.130 0.00 0.00 0.00 6.53
3016 3540 0.321387 GGTTGAAACCCTCCGTCTCC 60.321 60.000 0.36 0.00 43.43 3.71
3025 3549 1.101635 CCTCCGTCTCCGCATCACTA 61.102 60.000 0.00 0.00 0.00 2.74
3028 3552 0.385751 CCGTCTCCGCATCACTATGT 59.614 55.000 0.00 0.00 35.38 2.29
3038 3562 3.688272 GCATCACTATGTTGCACACATC 58.312 45.455 14.94 0.57 43.17 3.06
3050 3574 6.389091 TGTTGCACACATCCATTCTTATTTC 58.611 36.000 0.00 0.00 0.00 2.17
3054 3578 8.523915 TGCACACATCCATTCTTATTTCTTAT 57.476 30.769 0.00 0.00 0.00 1.73
3055 3579 8.970020 TGCACACATCCATTCTTATTTCTTATT 58.030 29.630 0.00 0.00 0.00 1.40
3081 3605 5.440260 CGGAGTACGTAACAAATACAACC 57.560 43.478 0.00 0.00 37.93 3.77
3082 3606 4.922692 CGGAGTACGTAACAAATACAACCA 59.077 41.667 0.00 0.00 37.93 3.67
3083 3607 5.164061 CGGAGTACGTAACAAATACAACCAC 60.164 44.000 0.00 0.00 37.93 4.16
3084 3608 5.928264 GGAGTACGTAACAAATACAACCACT 59.072 40.000 0.00 0.00 33.89 4.00
3085 3609 7.090173 GGAGTACGTAACAAATACAACCACTA 58.910 38.462 0.00 0.00 33.89 2.74
3086 3610 7.062255 GGAGTACGTAACAAATACAACCACTAC 59.938 40.741 0.00 0.00 33.89 2.73
3087 3611 7.432869 AGTACGTAACAAATACAACCACTACA 58.567 34.615 0.00 0.00 33.89 2.74
3088 3612 7.925483 AGTACGTAACAAATACAACCACTACAA 59.075 33.333 0.00 0.00 33.89 2.41
3089 3613 7.551035 ACGTAACAAATACAACCACTACAAA 57.449 32.000 0.00 0.00 33.89 2.83
3090 3614 7.983307 ACGTAACAAATACAACCACTACAAAA 58.017 30.769 0.00 0.00 33.89 2.44
3091 3615 7.909641 ACGTAACAAATACAACCACTACAAAAC 59.090 33.333 0.00 0.00 33.89 2.43
3092 3616 7.909121 CGTAACAAATACAACCACTACAAAACA 59.091 33.333 0.00 0.00 33.89 2.83
3093 3617 9.228636 GTAACAAATACAACCACTACAAAACAG 57.771 33.333 0.00 0.00 34.46 3.16
3094 3618 7.399245 ACAAATACAACCACTACAAAACAGT 57.601 32.000 0.00 0.00 0.00 3.55
3095 3619 7.832769 ACAAATACAACCACTACAAAACAGTT 58.167 30.769 0.00 0.00 0.00 3.16
3096 3620 8.958506 ACAAATACAACCACTACAAAACAGTTA 58.041 29.630 0.00 0.00 0.00 2.24
3097 3621 9.228636 CAAATACAACCACTACAAAACAGTTAC 57.771 33.333 0.00 0.00 0.00 2.50
3098 3622 5.473796 ACAACCACTACAAAACAGTTACG 57.526 39.130 0.00 0.00 0.00 3.18
3099 3623 4.201841 ACAACCACTACAAAACAGTTACGC 60.202 41.667 0.00 0.00 0.00 4.42
3100 3624 3.533547 ACCACTACAAAACAGTTACGCA 58.466 40.909 0.00 0.00 0.00 5.24
3101 3625 3.558418 ACCACTACAAAACAGTTACGCAG 59.442 43.478 0.00 0.00 0.00 5.18
3102 3626 3.541711 CACTACAAAACAGTTACGCAGC 58.458 45.455 0.00 0.00 0.00 5.25
3103 3627 2.220133 ACTACAAAACAGTTACGCAGCG 59.780 45.455 14.82 14.82 0.00 5.18
3104 3628 0.306533 ACAAAACAGTTACGCAGCGG 59.693 50.000 21.15 2.73 0.00 5.52
3105 3629 0.996727 CAAAACAGTTACGCAGCGGC 60.997 55.000 21.15 8.96 0.00 6.53
3122 3646 4.427394 CGGAGCTATGTGGTGAGC 57.573 61.111 0.00 0.00 39.08 4.26
3126 3650 4.547859 GCTATGTGGTGAGCTGGG 57.452 61.111 0.00 0.00 35.73 4.45
3127 3651 1.153086 GCTATGTGGTGAGCTGGGG 60.153 63.158 0.00 0.00 35.73 4.96
3128 3652 1.528824 CTATGTGGTGAGCTGGGGG 59.471 63.158 0.00 0.00 0.00 5.40
3158 3682 3.820425 CCCCCACAGCCTTGTAGA 58.180 61.111 0.00 0.00 35.25 2.59
3159 3683 2.311287 CCCCCACAGCCTTGTAGAT 58.689 57.895 0.00 0.00 35.25 1.98
3160 3684 1.507140 CCCCCACAGCCTTGTAGATA 58.493 55.000 0.00 0.00 35.25 1.98
3161 3685 2.057922 CCCCCACAGCCTTGTAGATAT 58.942 52.381 0.00 0.00 35.25 1.63
3162 3686 2.443255 CCCCCACAGCCTTGTAGATATT 59.557 50.000 0.00 0.00 35.25 1.28
3163 3687 3.496870 CCCCCACAGCCTTGTAGATATTC 60.497 52.174 0.00 0.00 35.25 1.75
3164 3688 3.496870 CCCCACAGCCTTGTAGATATTCC 60.497 52.174 0.00 0.00 35.25 3.01
3165 3689 3.392616 CCCACAGCCTTGTAGATATTCCT 59.607 47.826 0.00 0.00 35.25 3.36
3166 3690 4.384056 CCACAGCCTTGTAGATATTCCTG 58.616 47.826 0.00 0.00 35.25 3.86
3167 3691 4.101585 CCACAGCCTTGTAGATATTCCTGA 59.898 45.833 0.00 0.00 35.25 3.86
3168 3692 5.396772 CCACAGCCTTGTAGATATTCCTGAA 60.397 44.000 0.00 0.00 35.25 3.02
3169 3693 5.757320 CACAGCCTTGTAGATATTCCTGAAG 59.243 44.000 0.00 0.00 35.25 3.02
3170 3694 5.663106 ACAGCCTTGTAGATATTCCTGAAGA 59.337 40.000 0.00 0.00 35.25 2.87
3171 3695 6.328672 ACAGCCTTGTAGATATTCCTGAAGAT 59.671 38.462 0.00 0.00 35.25 2.40
3172 3696 7.147408 ACAGCCTTGTAGATATTCCTGAAGATT 60.147 37.037 0.00 0.00 35.25 2.40
3173 3697 7.718753 CAGCCTTGTAGATATTCCTGAAGATTT 59.281 37.037 0.00 0.00 0.00 2.17
3174 3698 8.277918 AGCCTTGTAGATATTCCTGAAGATTTT 58.722 33.333 0.00 0.00 0.00 1.82
3175 3699 8.907885 GCCTTGTAGATATTCCTGAAGATTTTT 58.092 33.333 0.00 0.00 0.00 1.94
3198 3722 7.404671 TTTTATTTGAAGGGCTTAGCTTAGG 57.595 36.000 3.59 0.00 0.00 2.69
3199 3723 3.366052 TTTGAAGGGCTTAGCTTAGGG 57.634 47.619 3.59 0.00 0.00 3.53
3200 3724 2.263895 TGAAGGGCTTAGCTTAGGGA 57.736 50.000 3.59 0.00 0.00 4.20
3201 3725 2.557869 TGAAGGGCTTAGCTTAGGGAA 58.442 47.619 3.59 0.00 0.00 3.97
3202 3726 2.916934 TGAAGGGCTTAGCTTAGGGAAA 59.083 45.455 3.59 0.00 0.00 3.13
3203 3727 3.332485 TGAAGGGCTTAGCTTAGGGAAAA 59.668 43.478 3.59 0.00 0.00 2.29
3204 3728 4.202631 TGAAGGGCTTAGCTTAGGGAAAAA 60.203 41.667 3.59 0.00 0.00 1.94
3205 3729 4.609866 AGGGCTTAGCTTAGGGAAAAAT 57.390 40.909 3.59 0.00 0.00 1.82
3206 3730 4.947883 AGGGCTTAGCTTAGGGAAAAATT 58.052 39.130 3.59 0.00 0.00 1.82
3207 3731 6.087276 AGGGCTTAGCTTAGGGAAAAATTA 57.913 37.500 3.59 0.00 0.00 1.40
3208 3732 6.129874 AGGGCTTAGCTTAGGGAAAAATTAG 58.870 40.000 3.59 0.00 0.00 1.73
3209 3733 5.221263 GGGCTTAGCTTAGGGAAAAATTAGC 60.221 44.000 3.59 0.00 0.00 3.09
3210 3734 5.505819 GGCTTAGCTTAGGGAAAAATTAGCG 60.506 44.000 3.59 0.00 34.01 4.26
3211 3735 5.066117 GCTTAGCTTAGGGAAAAATTAGCGT 59.934 40.000 1.31 0.00 34.01 5.07
3212 3736 6.404403 GCTTAGCTTAGGGAAAAATTAGCGTT 60.404 38.462 1.31 0.00 34.01 4.84
3213 3737 5.977489 AGCTTAGGGAAAAATTAGCGTTT 57.023 34.783 0.00 0.00 34.01 3.60
3214 3738 5.709966 AGCTTAGGGAAAAATTAGCGTTTG 58.290 37.500 0.00 0.00 34.01 2.93
3215 3739 4.862574 GCTTAGGGAAAAATTAGCGTTTGG 59.137 41.667 0.00 0.00 0.00 3.28
3216 3740 3.313012 AGGGAAAAATTAGCGTTTGGC 57.687 42.857 0.00 0.00 44.05 4.52
3217 3741 2.028476 AGGGAAAAATTAGCGTTTGGCC 60.028 45.455 0.00 0.00 45.17 5.36
3218 3742 2.343101 GGAAAAATTAGCGTTTGGCCC 58.657 47.619 0.00 0.00 45.17 5.80
3219 3743 2.343101 GAAAAATTAGCGTTTGGCCCC 58.657 47.619 0.00 0.00 45.17 5.80
3220 3744 0.611200 AAAATTAGCGTTTGGCCCCC 59.389 50.000 0.00 0.00 45.17 5.40
3543 4067 7.837202 CACTGGTTACGAGGTATGAAATAAA 57.163 36.000 0.00 0.00 0.00 1.40
3544 4068 7.681903 CACTGGTTACGAGGTATGAAATAAAC 58.318 38.462 0.00 0.00 0.00 2.01
3545 4069 7.332430 CACTGGTTACGAGGTATGAAATAAACA 59.668 37.037 0.00 0.00 0.00 2.83
3546 4070 7.332678 ACTGGTTACGAGGTATGAAATAAACAC 59.667 37.037 0.00 0.00 0.00 3.32
3547 4071 6.594937 TGGTTACGAGGTATGAAATAAACACC 59.405 38.462 0.00 0.00 0.00 4.16
3548 4072 6.820152 GGTTACGAGGTATGAAATAAACACCT 59.180 38.462 0.00 0.00 42.29 4.00
3549 4073 7.981225 GGTTACGAGGTATGAAATAAACACCTA 59.019 37.037 0.00 0.00 39.71 3.08
3550 4074 9.538508 GTTACGAGGTATGAAATAAACACCTAT 57.461 33.333 0.00 0.00 39.71 2.57
3551 4075 9.537192 TTACGAGGTATGAAATAAACACCTATG 57.463 33.333 0.00 0.00 39.71 2.23
3552 4076 7.788026 ACGAGGTATGAAATAAACACCTATGA 58.212 34.615 0.00 0.00 39.71 2.15
3553 4077 7.926555 ACGAGGTATGAAATAAACACCTATGAG 59.073 37.037 0.00 0.00 39.71 2.90
3554 4078 7.926555 CGAGGTATGAAATAAACACCTATGAGT 59.073 37.037 0.00 0.00 39.71 3.41
3561 4085 9.878667 TGAAATAAACACCTATGAGTAAATCGA 57.121 29.630 0.00 0.00 0.00 3.59
3563 4087 9.886132 AAATAAACACCTATGAGTAAATCGACT 57.114 29.630 0.00 0.00 0.00 4.18
3564 4088 9.886132 AATAAACACCTATGAGTAAATCGACTT 57.114 29.630 0.00 0.00 0.00 3.01
3565 4089 7.829378 AAACACCTATGAGTAAATCGACTTC 57.171 36.000 0.00 0.00 0.00 3.01
3566 4090 6.777213 ACACCTATGAGTAAATCGACTTCT 57.223 37.500 0.00 0.00 0.00 2.85
3567 4091 7.171630 ACACCTATGAGTAAATCGACTTCTT 57.828 36.000 0.00 0.00 0.00 2.52
3568 4092 7.259161 ACACCTATGAGTAAATCGACTTCTTC 58.741 38.462 0.00 0.00 0.00 2.87
3569 4093 6.697892 CACCTATGAGTAAATCGACTTCTTCC 59.302 42.308 0.00 0.00 0.00 3.46
3570 4094 6.380274 ACCTATGAGTAAATCGACTTCTTCCA 59.620 38.462 0.00 0.00 0.00 3.53
3571 4095 6.697892 CCTATGAGTAAATCGACTTCTTCCAC 59.302 42.308 0.00 0.00 0.00 4.02
3572 4096 5.462530 TGAGTAAATCGACTTCTTCCACA 57.537 39.130 0.00 0.00 0.00 4.17
3573 4097 6.037786 TGAGTAAATCGACTTCTTCCACAT 57.962 37.500 0.00 0.00 0.00 3.21
3574 4098 6.100004 TGAGTAAATCGACTTCTTCCACATC 58.900 40.000 0.00 0.00 0.00 3.06
3575 4099 6.037786 AGTAAATCGACTTCTTCCACATCA 57.962 37.500 0.00 0.00 0.00 3.07
3576 4100 6.464222 AGTAAATCGACTTCTTCCACATCAA 58.536 36.000 0.00 0.00 0.00 2.57
3577 4101 5.613358 AAATCGACTTCTTCCACATCAAC 57.387 39.130 0.00 0.00 0.00 3.18
3578 4102 2.672714 TCGACTTCTTCCACATCAACG 58.327 47.619 0.00 0.00 0.00 4.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
127 132 4.081087 ACTGGCGTGTAAAAGATATCCACT 60.081 41.667 0.00 0.00 0.00 4.00
128 133 4.189231 ACTGGCGTGTAAAAGATATCCAC 58.811 43.478 0.00 0.00 0.00 4.02
129 134 4.081365 TGACTGGCGTGTAAAAGATATCCA 60.081 41.667 0.00 0.00 0.00 3.41
130 135 4.439057 TGACTGGCGTGTAAAAGATATCC 58.561 43.478 0.00 0.00 0.00 2.59
144 150 7.117454 CGTAAAAATATTCTAGTTGACTGGCG 58.883 38.462 0.00 0.00 0.00 5.69
145 151 6.905609 GCGTAAAAATATTCTAGTTGACTGGC 59.094 38.462 0.00 0.00 0.00 4.85
146 152 7.970384 TGCGTAAAAATATTCTAGTTGACTGG 58.030 34.615 0.00 0.00 0.00 4.00
156 163 3.560068 CCTCCGCTGCGTAAAAATATTCT 59.440 43.478 21.59 0.00 0.00 2.40
171 178 1.909700 TTTTCAATCTTGCCTCCGCT 58.090 45.000 0.00 0.00 35.36 5.52
219 450 7.886338 AGAAATTTCCACTCGATTAGCTTTTT 58.114 30.769 14.61 0.00 0.00 1.94
220 451 7.454260 AGAAATTTCCACTCGATTAGCTTTT 57.546 32.000 14.61 0.00 0.00 2.27
221 452 7.454260 AAGAAATTTCCACTCGATTAGCTTT 57.546 32.000 14.61 0.00 0.00 3.51
222 453 7.606456 TGTAAGAAATTTCCACTCGATTAGCTT 59.394 33.333 14.61 0.77 0.00 3.74
223 454 7.103641 TGTAAGAAATTTCCACTCGATTAGCT 58.896 34.615 14.61 0.00 0.00 3.32
224 455 7.303634 TGTAAGAAATTTCCACTCGATTAGC 57.696 36.000 14.61 2.19 0.00 3.09
227 458 8.792633 TGATTTGTAAGAAATTTCCACTCGATT 58.207 29.630 14.61 3.50 0.00 3.34
228 459 8.335532 TGATTTGTAAGAAATTTCCACTCGAT 57.664 30.769 14.61 8.41 0.00 3.59
256 487 4.429169 GTCTTTGTCGAAAACTTTTCGTCG 59.571 41.667 27.51 14.72 42.09 5.12
312 546 7.928908 TGTCACTGAACTTAATTTGATTTGC 57.071 32.000 0.00 0.00 0.00 3.68
545 813 1.123861 TTCCTGCCAGTGAGCTCTGT 61.124 55.000 16.19 0.00 34.02 3.41
548 816 1.609208 TTTTTCCTGCCAGTGAGCTC 58.391 50.000 6.82 6.82 0.00 4.09
566 834 6.469410 TGGACATCGGTAGACTGTAATTTTT 58.531 36.000 0.00 0.00 0.00 1.94
573 841 0.818296 GCTGGACATCGGTAGACTGT 59.182 55.000 0.00 0.00 0.00 3.55
579 847 1.472552 CGGATTTGCTGGACATCGGTA 60.473 52.381 0.00 0.00 0.00 4.02
582 850 1.086696 AACGGATTTGCTGGACATCG 58.913 50.000 0.00 0.00 0.00 3.84
622 890 8.902806 CCATGGCTAAAAATCTAACATTCACTA 58.097 33.333 0.00 0.00 0.00 2.74
630 898 6.198966 CGATTTGCCATGGCTAAAAATCTAAC 59.801 38.462 34.85 22.12 38.13 2.34
631 899 6.096141 TCGATTTGCCATGGCTAAAAATCTAA 59.904 34.615 34.85 26.87 38.13 2.10
632 900 5.592282 TCGATTTGCCATGGCTAAAAATCTA 59.408 36.000 34.85 28.67 38.13 1.98
633 901 4.402155 TCGATTTGCCATGGCTAAAAATCT 59.598 37.500 34.85 23.23 38.13 2.40
634 902 4.681744 TCGATTTGCCATGGCTAAAAATC 58.318 39.130 32.03 32.03 39.04 2.17
636 904 4.241681 GTTCGATTTGCCATGGCTAAAAA 58.758 39.130 35.53 26.95 39.04 1.94
637 905 3.671971 CGTTCGATTTGCCATGGCTAAAA 60.672 43.478 35.53 27.64 39.04 1.52
638 906 2.159448 CGTTCGATTTGCCATGGCTAAA 60.159 45.455 35.53 29.98 39.04 1.85
639 907 1.400142 CGTTCGATTTGCCATGGCTAA 59.600 47.619 35.53 33.21 42.51 3.09
641 909 0.960364 ACGTTCGATTTGCCATGGCT 60.960 50.000 35.53 17.85 42.51 4.75
642 910 0.523335 GACGTTCGATTTGCCATGGC 60.523 55.000 30.54 30.54 42.35 4.40
643 911 0.801872 TGACGTTCGATTTGCCATGG 59.198 50.000 7.63 7.63 0.00 3.66
644 912 2.443387 CATGACGTTCGATTTGCCATG 58.557 47.619 0.00 0.00 0.00 3.66
645 913 1.401552 CCATGACGTTCGATTTGCCAT 59.598 47.619 0.00 0.00 0.00 4.40
646 914 0.801872 CCATGACGTTCGATTTGCCA 59.198 50.000 0.00 0.00 0.00 4.92
647 915 0.523335 GCCATGACGTTCGATTTGCC 60.523 55.000 0.00 0.00 0.00 4.52
648 916 0.167908 TGCCATGACGTTCGATTTGC 59.832 50.000 0.00 0.00 0.00 3.68
649 917 2.610219 TTGCCATGACGTTCGATTTG 57.390 45.000 0.00 0.00 0.00 2.32
650 918 3.848272 ATTTGCCATGACGTTCGATTT 57.152 38.095 0.00 0.00 0.00 2.17
651 919 3.848272 AATTTGCCATGACGTTCGATT 57.152 38.095 0.00 0.00 0.00 3.34
652 920 5.499139 AATAATTTGCCATGACGTTCGAT 57.501 34.783 0.00 0.00 0.00 3.59
653 921 4.955925 AATAATTTGCCATGACGTTCGA 57.044 36.364 0.00 0.00 0.00 3.71
654 922 6.388259 AAAAATAATTTGCCATGACGTTCG 57.612 33.333 0.00 0.00 0.00 3.95
655 923 7.462200 CGGTAAAAATAATTTGCCATGACGTTC 60.462 37.037 8.42 0.00 0.00 3.95
656 924 6.309251 CGGTAAAAATAATTTGCCATGACGTT 59.691 34.615 8.42 0.00 0.00 3.99
657 925 5.802956 CGGTAAAAATAATTTGCCATGACGT 59.197 36.000 8.42 0.00 0.00 4.34
658 926 6.030849 TCGGTAAAAATAATTTGCCATGACG 58.969 36.000 8.42 0.00 0.00 4.35
659 927 6.475402 CCTCGGTAAAAATAATTTGCCATGAC 59.525 38.462 8.42 0.00 0.00 3.06
666 934 9.730420 CTTATCACCCTCGGTAAAAATAATTTG 57.270 33.333 0.00 0.00 32.11 2.32
673 941 4.931002 CGTTCTTATCACCCTCGGTAAAAA 59.069 41.667 0.00 0.00 32.11 1.94
674 942 4.021192 ACGTTCTTATCACCCTCGGTAAAA 60.021 41.667 0.00 0.00 32.11 1.52
675 943 3.511146 ACGTTCTTATCACCCTCGGTAAA 59.489 43.478 0.00 0.00 32.11 2.01
677 945 2.726821 ACGTTCTTATCACCCTCGGTA 58.273 47.619 0.00 0.00 32.11 4.02
678 946 1.553706 ACGTTCTTATCACCCTCGGT 58.446 50.000 0.00 0.00 35.62 4.69
680 948 3.226346 TGAACGTTCTTATCACCCTCG 57.774 47.619 27.32 0.00 0.00 4.63
681 949 6.314784 CAAATTGAACGTTCTTATCACCCTC 58.685 40.000 27.32 0.00 0.00 4.30
684 952 4.857037 GGCAAATTGAACGTTCTTATCACC 59.143 41.667 27.32 18.01 0.00 4.02
685 953 5.457140 TGGCAAATTGAACGTTCTTATCAC 58.543 37.500 27.32 13.56 0.00 3.06
687 955 5.004726 GCATGGCAAATTGAACGTTCTTATC 59.995 40.000 27.32 12.17 0.00 1.75
688 956 4.864247 GCATGGCAAATTGAACGTTCTTAT 59.136 37.500 27.32 17.79 0.00 1.73
692 1057 1.726248 GGCATGGCAAATTGAACGTTC 59.274 47.619 21.42 21.42 0.00 3.95
699 1064 6.802834 GTCAAATTTTTAGGCATGGCAAATTG 59.197 34.615 22.64 15.12 29.56 2.32
754 1122 6.756074 CCAAGAAAGCACATGTAAGAAACAAA 59.244 34.615 0.00 0.00 42.70 2.83
755 1123 6.127479 ACCAAGAAAGCACATGTAAGAAACAA 60.127 34.615 0.00 0.00 42.70 2.83
765 1133 1.606224 GGCCAACCAAGAAAGCACATG 60.606 52.381 0.00 0.00 35.26 3.21
815 1184 7.090953 TCTTTTCGGTGAAACAACAATTAGT 57.909 32.000 0.00 0.00 39.98 2.24
965 1359 9.131791 TCTTTCTAAGCTTTCTTTGGTGTTTAT 57.868 29.630 3.20 0.00 33.85 1.40
966 1360 8.514330 TCTTTCTAAGCTTTCTTTGGTGTTTA 57.486 30.769 3.20 0.00 33.85 2.01
1009 1403 4.447342 GATGGGGGTGTGCCTGGG 62.447 72.222 0.00 0.00 34.45 4.45
1010 1404 4.447342 GGATGGGGGTGTGCCTGG 62.447 72.222 0.00 0.00 34.45 4.45
1011 1405 4.447342 GGGATGGGGGTGTGCCTG 62.447 72.222 0.00 0.00 34.45 4.85
1014 1408 3.963124 CTTGGGGATGGGGGTGTGC 62.963 68.421 0.00 0.00 0.00 4.57
1015 1409 2.360191 CTTGGGGATGGGGGTGTG 59.640 66.667 0.00 0.00 0.00 3.82
1016 1410 3.672503 GCTTGGGGATGGGGGTGT 61.673 66.667 0.00 0.00 0.00 4.16
1017 1411 4.463788 GGCTTGGGGATGGGGGTG 62.464 72.222 0.00 0.00 0.00 4.61
1019 1413 3.682409 TTGGCTTGGGGATGGGGG 61.682 66.667 0.00 0.00 0.00 5.40
1106 1503 4.582701 TTGGGTTTAGAAATGTGTGCTG 57.417 40.909 0.00 0.00 0.00 4.41
1130 1527 4.452733 GGAGGAGCGTTCGGGTGG 62.453 72.222 0.00 0.00 0.00 4.61
1131 1528 3.019003 ATGGAGGAGCGTTCGGGTG 62.019 63.158 0.00 0.00 0.00 4.61
1557 1957 3.770040 CCTCGTCCATGGCCACGA 61.770 66.667 22.92 22.92 42.61 4.35
1813 2234 2.507992 CAGTTGCTCTCCGGCGAG 60.508 66.667 17.33 17.33 37.48 5.03
1879 2309 1.077212 CATGTGGAAGCAGGGGAGG 60.077 63.158 0.00 0.00 0.00 4.30
1934 2364 1.065636 ACTCATCAGTGGTCTGCATGG 60.066 52.381 0.00 0.00 41.10 3.66
1948 2378 4.047822 CGGCAGTGATAGAGAAACTCATC 58.952 47.826 0.00 0.00 32.06 2.92
1952 2382 1.827969 AGCGGCAGTGATAGAGAAACT 59.172 47.619 1.45 0.00 0.00 2.66
1953 2383 2.197577 GAGCGGCAGTGATAGAGAAAC 58.802 52.381 1.45 0.00 0.00 2.78
1955 2385 0.382158 CGAGCGGCAGTGATAGAGAA 59.618 55.000 1.45 0.00 0.00 2.87
1957 2387 0.945099 TACGAGCGGCAGTGATAGAG 59.055 55.000 1.45 0.00 0.00 2.43
1960 2390 1.600957 GTAGTACGAGCGGCAGTGATA 59.399 52.381 1.45 0.00 0.00 2.15
1961 2391 0.381089 GTAGTACGAGCGGCAGTGAT 59.619 55.000 1.45 0.00 0.00 3.06
1973 2403 3.126831 CCGTGGTAGTAGGAGTAGTACG 58.873 54.545 0.00 0.00 36.32 3.67
1989 2419 8.449430 GTAGCTATACTAATCCCACACCGTGG 62.449 50.000 6.16 6.16 42.05 4.94
1991 2421 3.573695 AGCTATACTAATCCCACACCGT 58.426 45.455 0.00 0.00 0.00 4.83
1992 2422 4.765856 AGTAGCTATACTAATCCCACACCG 59.234 45.833 0.00 0.00 40.57 4.94
1993 2423 6.667558 AAGTAGCTATACTAATCCCACACC 57.332 41.667 0.00 0.00 41.54 4.16
1994 2424 7.314393 GCTAAGTAGCTATACTAATCCCACAC 58.686 42.308 0.00 0.00 45.62 3.82
1995 2425 7.463961 GCTAAGTAGCTATACTAATCCCACA 57.536 40.000 0.00 0.00 45.62 4.17
2041 2494 8.724310 ACCAGCTAATTACTAATTAATCACCCT 58.276 33.333 3.40 0.00 33.26 4.34
2042 2495 8.784043 CACCAGCTAATTACTAATTAATCACCC 58.216 37.037 3.40 0.00 33.26 4.61
2069 2524 6.801539 ATTTGATACTACACCACACACAAG 57.198 37.500 0.00 0.00 0.00 3.16
2098 2553 2.884639 ACACAGATTAACCAGGCAACAC 59.115 45.455 0.00 0.00 41.41 3.32
2129 2584 3.068024 TGTCATCTTTGCCCACTTTCAAC 59.932 43.478 0.00 0.00 0.00 3.18
2130 2585 3.295093 TGTCATCTTTGCCCACTTTCAA 58.705 40.909 0.00 0.00 0.00 2.69
2132 2587 3.507233 TGATGTCATCTTTGCCCACTTTC 59.493 43.478 13.90 0.00 0.00 2.62
2172 2628 6.321945 ACACAAATCCACACACATATATGCAT 59.678 34.615 12.79 3.79 0.00 3.96
2173 2629 5.651576 ACACAAATCCACACACATATATGCA 59.348 36.000 12.79 0.00 0.00 3.96
2174 2630 5.972973 CACACAAATCCACACACATATATGC 59.027 40.000 12.79 0.00 0.00 3.14
2175 2631 6.095300 ACCACACAAATCCACACACATATATG 59.905 38.462 11.29 11.29 0.00 1.78
2176 2632 6.186957 ACCACACAAATCCACACACATATAT 58.813 36.000 0.00 0.00 0.00 0.86
2177 2633 5.565509 ACCACACAAATCCACACACATATA 58.434 37.500 0.00 0.00 0.00 0.86
2178 2634 4.406456 ACCACACAAATCCACACACATAT 58.594 39.130 0.00 0.00 0.00 1.78
2179 2635 3.826524 ACCACACAAATCCACACACATA 58.173 40.909 0.00 0.00 0.00 2.29
2180 2636 2.665165 ACCACACAAATCCACACACAT 58.335 42.857 0.00 0.00 0.00 3.21
2182 2638 3.211045 AGTACCACACAAATCCACACAC 58.789 45.455 0.00 0.00 0.00 3.82
2183 2639 3.569194 AGTACCACACAAATCCACACA 57.431 42.857 0.00 0.00 0.00 3.72
2184 2640 4.638304 ACTAGTACCACACAAATCCACAC 58.362 43.478 0.00 0.00 0.00 3.82
2185 2641 4.967084 ACTAGTACCACACAAATCCACA 57.033 40.909 0.00 0.00 0.00 4.17
2186 2642 6.034161 ACTACTAGTACCACACAAATCCAC 57.966 41.667 0.00 0.00 0.00 4.02
2187 2643 7.161773 GTACTACTAGTACCACACAAATCCA 57.838 40.000 13.54 0.00 43.96 3.41
2200 2656 8.890410 AGGGAAAACTGAATGTACTACTAGTA 57.110 34.615 1.89 1.89 0.00 1.82
2201 2657 7.453752 TGAGGGAAAACTGAATGTACTACTAGT 59.546 37.037 0.00 0.00 0.00 2.57
2202 2658 7.837863 TGAGGGAAAACTGAATGTACTACTAG 58.162 38.462 0.00 0.00 0.00 2.57
2203 2659 7.786046 TGAGGGAAAACTGAATGTACTACTA 57.214 36.000 0.00 0.00 0.00 1.82
2204 2660 6.681729 TGAGGGAAAACTGAATGTACTACT 57.318 37.500 0.00 0.00 0.00 2.57
2205 2661 7.739498 TTTGAGGGAAAACTGAATGTACTAC 57.261 36.000 0.00 0.00 0.00 2.73
2206 2662 8.754991 TTTTTGAGGGAAAACTGAATGTACTA 57.245 30.769 0.00 0.00 33.09 1.82
2207 2663 7.654022 TTTTTGAGGGAAAACTGAATGTACT 57.346 32.000 0.00 0.00 33.09 2.73
2233 2689 9.515226 ACAAATCCACACACATATACTACTTTT 57.485 29.630 0.00 0.00 0.00 2.27
2234 2690 8.946085 CACAAATCCACACACATATACTACTTT 58.054 33.333 0.00 0.00 0.00 2.66
2235 2691 8.100791 ACACAAATCCACACACATATACTACTT 58.899 33.333 0.00 0.00 0.00 2.24
2236 2692 7.549134 CACACAAATCCACACACATATACTACT 59.451 37.037 0.00 0.00 0.00 2.57
2237 2693 7.201609 CCACACAAATCCACACACATATACTAC 60.202 40.741 0.00 0.00 0.00 2.73
2238 2694 6.821160 CCACACAAATCCACACACATATACTA 59.179 38.462 0.00 0.00 0.00 1.82
2239 2695 5.647658 CCACACAAATCCACACACATATACT 59.352 40.000 0.00 0.00 0.00 2.12
2250 2706 2.582052 TCACCTTCCACACAAATCCAC 58.418 47.619 0.00 0.00 0.00 4.02
2251 2707 3.074390 AGATCACCTTCCACACAAATCCA 59.926 43.478 0.00 0.00 0.00 3.41
2252 2708 3.690460 AGATCACCTTCCACACAAATCC 58.310 45.455 0.00 0.00 0.00 3.01
2253 2709 4.394300 CAGAGATCACCTTCCACACAAATC 59.606 45.833 0.00 0.00 0.00 2.17
2254 2710 4.330250 CAGAGATCACCTTCCACACAAAT 58.670 43.478 0.00 0.00 0.00 2.32
2257 2713 1.002430 GCAGAGATCACCTTCCACACA 59.998 52.381 0.00 0.00 0.00 3.72
2258 2714 1.002430 TGCAGAGATCACCTTCCACAC 59.998 52.381 0.00 0.00 0.00 3.82
2259 2715 1.351076 TGCAGAGATCACCTTCCACA 58.649 50.000 0.00 0.00 0.00 4.17
2260 2716 2.286872 CATGCAGAGATCACCTTCCAC 58.713 52.381 0.00 0.00 0.00 4.02
2313 2806 1.022735 GCCATGCTCATCACCTTGAG 58.977 55.000 0.00 0.00 44.87 3.02
2334 2827 4.146443 GTGATTTTAGTTCAAACGCACTGC 59.854 41.667 0.00 0.00 32.02 4.40
2341 2834 8.782533 ATTCTTGTCGTGATTTTAGTTCAAAC 57.217 30.769 0.00 0.00 0.00 2.93
2360 2853 8.004087 ACACTTGATCCATTCCATAATTCTTG 57.996 34.615 0.00 0.00 0.00 3.02
2374 2867 6.657541 GGGTGACTTATTTTACACTTGATCCA 59.342 38.462 0.00 0.00 34.28 3.41
2379 2872 7.712797 ACAAAGGGTGACTTATTTTACACTTG 58.287 34.615 0.00 0.00 38.85 3.16
2384 2877 8.011673 GTCGTAACAAAGGGTGACTTATTTTAC 58.988 37.037 0.00 0.00 38.85 2.01
2385 2878 7.095691 CGTCGTAACAAAGGGTGACTTATTTTA 60.096 37.037 0.00 0.00 38.85 1.52
2393 2886 2.138596 TCGTCGTAACAAAGGGTGAC 57.861 50.000 0.00 0.00 0.00 3.67
2394 2887 3.389925 AATCGTCGTAACAAAGGGTGA 57.610 42.857 0.00 0.00 0.00 4.02
2395 2888 4.477302 AAAATCGTCGTAACAAAGGGTG 57.523 40.909 0.00 0.00 0.00 4.61
2396 2889 6.806388 ATTAAAATCGTCGTAACAAAGGGT 57.194 33.333 0.00 0.00 0.00 4.34
2397 2890 7.804129 TCAAATTAAAATCGTCGTAACAAAGGG 59.196 33.333 0.00 0.00 0.00 3.95
2398 2891 8.716619 TCAAATTAAAATCGTCGTAACAAAGG 57.283 30.769 0.00 0.00 0.00 3.11
2401 2894 9.880064 TCATTCAAATTAAAATCGTCGTAACAA 57.120 25.926 0.00 0.00 0.00 2.83
2404 2897 9.710979 GGATCATTCAAATTAAAATCGTCGTAA 57.289 29.630 0.00 0.00 0.00 3.18
2405 2898 8.884726 TGGATCATTCAAATTAAAATCGTCGTA 58.115 29.630 0.00 0.00 0.00 3.43
2406 2899 7.757526 TGGATCATTCAAATTAAAATCGTCGT 58.242 30.769 0.00 0.00 0.00 4.34
2407 2900 8.786937 ATGGATCATTCAAATTAAAATCGTCG 57.213 30.769 0.00 0.00 0.00 5.12
2427 2920 9.759473 CCCAAAAGAATACTATGGAATATGGAT 57.241 33.333 0.00 0.00 36.16 3.41
2428 2921 8.954729 TCCCAAAAGAATACTATGGAATATGGA 58.045 33.333 0.00 0.00 36.16 3.41
2429 2922 9.236006 CTCCCAAAAGAATACTATGGAATATGG 57.764 37.037 0.00 0.00 36.16 2.74
2430 2923 8.734386 GCTCCCAAAAGAATACTATGGAATATG 58.266 37.037 0.00 0.00 36.16 1.78
2431 2924 7.607991 CGCTCCCAAAAGAATACTATGGAATAT 59.392 37.037 0.00 0.00 36.16 1.28
2432 2925 6.934645 CGCTCCCAAAAGAATACTATGGAATA 59.065 38.462 0.00 0.00 36.16 1.75
2433 2926 5.765182 CGCTCCCAAAAGAATACTATGGAAT 59.235 40.000 0.00 0.00 36.16 3.01
2434 2927 5.104693 TCGCTCCCAAAAGAATACTATGGAA 60.105 40.000 0.00 0.00 36.16 3.53
2435 2928 4.407621 TCGCTCCCAAAAGAATACTATGGA 59.592 41.667 0.00 0.00 36.16 3.41
2436 2929 4.511826 GTCGCTCCCAAAAGAATACTATGG 59.488 45.833 0.00 0.00 34.81 2.74
2437 2930 4.511826 GGTCGCTCCCAAAAGAATACTATG 59.488 45.833 0.00 0.00 0.00 2.23
2438 2931 4.163458 TGGTCGCTCCCAAAAGAATACTAT 59.837 41.667 0.00 0.00 34.77 2.12
2439 2932 3.516300 TGGTCGCTCCCAAAAGAATACTA 59.484 43.478 0.00 0.00 34.77 1.82
2440 2933 2.304761 TGGTCGCTCCCAAAAGAATACT 59.695 45.455 0.00 0.00 34.77 2.12
2441 2934 2.678336 CTGGTCGCTCCCAAAAGAATAC 59.322 50.000 0.00 0.00 33.07 1.89
2442 2935 2.355716 CCTGGTCGCTCCCAAAAGAATA 60.356 50.000 0.00 0.00 33.07 1.75
2443 2936 1.614317 CCTGGTCGCTCCCAAAAGAAT 60.614 52.381 0.00 0.00 33.07 2.40
2444 2937 0.250727 CCTGGTCGCTCCCAAAAGAA 60.251 55.000 0.00 0.00 33.07 2.52
2445 2938 1.374947 CCTGGTCGCTCCCAAAAGA 59.625 57.895 0.00 0.00 33.07 2.52
2446 2939 1.675641 CCCTGGTCGCTCCCAAAAG 60.676 63.158 0.00 0.00 33.07 2.27
2447 2940 1.497309 ATCCCTGGTCGCTCCCAAAA 61.497 55.000 0.00 0.00 33.07 2.44
2448 2941 1.497309 AATCCCTGGTCGCTCCCAAA 61.497 55.000 0.00 0.00 33.07 3.28
2449 2942 1.497309 AAATCCCTGGTCGCTCCCAA 61.497 55.000 0.00 0.00 33.07 4.12
2450 2943 1.910580 GAAATCCCTGGTCGCTCCCA 61.911 60.000 0.00 0.00 34.77 4.37
2451 2944 1.153147 GAAATCCCTGGTCGCTCCC 60.153 63.158 0.00 0.00 34.77 4.30
2452 2945 0.253327 AAGAAATCCCTGGTCGCTCC 59.747 55.000 0.00 0.00 0.00 4.70
2453 2946 2.115343 AAAGAAATCCCTGGTCGCTC 57.885 50.000 0.00 0.00 0.00 5.03
2454 2947 2.558359 CAAAAAGAAATCCCTGGTCGCT 59.442 45.455 0.00 0.00 0.00 4.93
2455 2948 2.926586 GCAAAAAGAAATCCCTGGTCGC 60.927 50.000 0.00 0.00 0.00 5.19
2456 2949 2.352715 GGCAAAAAGAAATCCCTGGTCG 60.353 50.000 0.00 0.00 0.00 4.79
2457 2950 2.632512 TGGCAAAAAGAAATCCCTGGTC 59.367 45.455 0.00 0.00 0.00 4.02
2458 2951 2.688477 TGGCAAAAAGAAATCCCTGGT 58.312 42.857 0.00 0.00 0.00 4.00
2459 2952 3.557686 CCTTGGCAAAAAGAAATCCCTGG 60.558 47.826 0.00 0.00 0.00 4.45
2460 2953 3.557686 CCCTTGGCAAAAAGAAATCCCTG 60.558 47.826 0.00 0.00 0.00 4.45
2461 2954 2.639347 CCCTTGGCAAAAAGAAATCCCT 59.361 45.455 0.00 0.00 0.00 4.20
2462 2955 3.057969 CCCTTGGCAAAAAGAAATCCC 57.942 47.619 0.00 0.00 0.00 3.85
2586 3079 3.128415 CGTGTACAATGGAATCCATGCAA 59.872 43.478 16.52 1.02 44.40 4.08
2655 3172 2.205074 GGTGCTTACATGAGACATCCG 58.795 52.381 0.00 0.00 0.00 4.18
2657 3174 3.550437 AGGGTGCTTACATGAGACATC 57.450 47.619 0.00 0.00 0.00 3.06
2742 3264 3.771479 GGGGCATTTCCTCAGATTTCTTT 59.229 43.478 0.00 0.00 34.56 2.52
2745 3267 3.023939 AGGGGCATTTCCTCAGATTTC 57.976 47.619 0.00 0.00 38.00 2.17
2752 3274 1.416401 TCATACGAGGGGCATTTCCTC 59.584 52.381 0.00 0.00 45.46 3.71
2755 3277 2.354821 GTGTTCATACGAGGGGCATTTC 59.645 50.000 0.00 0.00 0.00 2.17
2756 3278 2.365582 GTGTTCATACGAGGGGCATTT 58.634 47.619 0.00 0.00 0.00 2.32
2771 3293 2.104963 AGACCACTTCTTGAGGGTGTTC 59.895 50.000 0.00 0.00 31.52 3.18
2799 3321 2.991190 TGCCGTCGAATTCTAGAACAAC 59.009 45.455 7.48 3.13 0.00 3.32
2817 3339 7.725251 TGTCCAGAATATTTTGGATTTATGCC 58.275 34.615 25.77 14.18 44.74 4.40
2837 3359 1.155889 CTATTGCACGCACTTGTCCA 58.844 50.000 0.00 0.00 0.00 4.02
2839 3361 1.135972 CCACTATTGCACGCACTTGTC 60.136 52.381 0.00 0.00 0.00 3.18
2847 3369 2.315925 ATCTCACCCACTATTGCACG 57.684 50.000 0.00 0.00 0.00 5.34
2917 3440 5.125417 ACATATTAATTATCATGGTGGCGGC 59.875 40.000 0.00 0.00 0.00 6.53
2918 3441 6.599244 AGACATATTAATTATCATGGTGGCGG 59.401 38.462 0.00 0.00 0.00 6.13
2919 3442 7.615582 AGACATATTAATTATCATGGTGGCG 57.384 36.000 0.00 0.00 0.00 5.69
2978 3501 5.188751 TCAACCCTTTATGCCCAAAATAAGG 59.811 40.000 0.00 0.00 0.00 2.69
2986 3509 2.252714 GGTTTCAACCCTTTATGCCCA 58.747 47.619 0.00 0.00 43.43 5.36
3012 3535 1.939974 GCAACATAGTGATGCGGAGA 58.060 50.000 0.00 0.00 36.47 3.71
3028 3552 6.839124 AGAAATAAGAATGGATGTGTGCAA 57.161 33.333 0.00 0.00 0.00 4.08
3059 3583 4.922692 TGGTTGTATTTGTTACGTACTCCG 59.077 41.667 0.00 0.00 44.03 4.63
3060 3584 5.928264 AGTGGTTGTATTTGTTACGTACTCC 59.072 40.000 0.00 0.00 33.15 3.85
3061 3585 7.594758 TGTAGTGGTTGTATTTGTTACGTACTC 59.405 37.037 0.00 0.00 33.15 2.59
3062 3586 7.432869 TGTAGTGGTTGTATTTGTTACGTACT 58.567 34.615 0.00 0.00 33.15 2.73
3063 3587 7.636259 TGTAGTGGTTGTATTTGTTACGTAC 57.364 36.000 0.00 0.00 33.15 3.67
3064 3588 8.654230 TTTGTAGTGGTTGTATTTGTTACGTA 57.346 30.769 0.00 0.00 33.15 3.57
3065 3589 7.551035 TTTGTAGTGGTTGTATTTGTTACGT 57.449 32.000 0.00 0.00 33.15 3.57
3066 3590 7.909121 TGTTTTGTAGTGGTTGTATTTGTTACG 59.091 33.333 0.00 0.00 33.15 3.18
3067 3591 9.228636 CTGTTTTGTAGTGGTTGTATTTGTTAC 57.771 33.333 0.00 0.00 0.00 2.50
3068 3592 8.958506 ACTGTTTTGTAGTGGTTGTATTTGTTA 58.041 29.630 0.00 0.00 0.00 2.41
3069 3593 7.832769 ACTGTTTTGTAGTGGTTGTATTTGTT 58.167 30.769 0.00 0.00 0.00 2.83
3070 3594 7.399245 ACTGTTTTGTAGTGGTTGTATTTGT 57.601 32.000 0.00 0.00 0.00 2.83
3071 3595 9.228636 GTAACTGTTTTGTAGTGGTTGTATTTG 57.771 33.333 0.00 0.00 0.00 2.32
3072 3596 8.124199 CGTAACTGTTTTGTAGTGGTTGTATTT 58.876 33.333 0.00 0.00 0.00 1.40
3073 3597 7.632721 CGTAACTGTTTTGTAGTGGTTGTATT 58.367 34.615 0.00 0.00 0.00 1.89
3074 3598 6.293027 GCGTAACTGTTTTGTAGTGGTTGTAT 60.293 38.462 0.00 0.00 0.00 2.29
3075 3599 5.006552 GCGTAACTGTTTTGTAGTGGTTGTA 59.993 40.000 0.00 0.00 0.00 2.41
3076 3600 4.201841 GCGTAACTGTTTTGTAGTGGTTGT 60.202 41.667 0.00 0.00 0.00 3.32
3077 3601 4.201832 TGCGTAACTGTTTTGTAGTGGTTG 60.202 41.667 0.00 0.00 0.00 3.77
3078 3602 3.940221 TGCGTAACTGTTTTGTAGTGGTT 59.060 39.130 0.00 0.00 0.00 3.67
3079 3603 3.533547 TGCGTAACTGTTTTGTAGTGGT 58.466 40.909 0.00 0.00 0.00 4.16
3080 3604 3.606153 GCTGCGTAACTGTTTTGTAGTGG 60.606 47.826 0.00 0.00 0.00 4.00
3081 3605 3.541711 GCTGCGTAACTGTTTTGTAGTG 58.458 45.455 0.00 0.00 0.00 2.74
3082 3606 2.220133 CGCTGCGTAACTGTTTTGTAGT 59.780 45.455 14.93 0.00 0.00 2.73
3083 3607 2.411031 CCGCTGCGTAACTGTTTTGTAG 60.411 50.000 21.59 2.14 0.00 2.74
3084 3608 1.527736 CCGCTGCGTAACTGTTTTGTA 59.472 47.619 21.59 0.00 0.00 2.41
3085 3609 0.306533 CCGCTGCGTAACTGTTTTGT 59.693 50.000 21.59 0.00 0.00 2.83
3086 3610 0.996727 GCCGCTGCGTAACTGTTTTG 60.997 55.000 21.59 2.24 0.00 2.44
3087 3611 1.281656 GCCGCTGCGTAACTGTTTT 59.718 52.632 21.59 0.00 0.00 2.43
3088 3612 2.943653 GCCGCTGCGTAACTGTTT 59.056 55.556 21.59 0.00 0.00 2.83
3098 3622 4.899239 ACATAGCTCCGCCGCTGC 62.899 66.667 6.90 0.00 41.12 5.25
3099 3623 2.963854 CACATAGCTCCGCCGCTG 60.964 66.667 6.90 0.00 41.12 5.18
3100 3624 4.227134 CCACATAGCTCCGCCGCT 62.227 66.667 0.00 2.29 43.83 5.52
3101 3625 4.530857 ACCACATAGCTCCGCCGC 62.531 66.667 0.00 0.00 0.00 6.53
3102 3626 2.586079 CACCACATAGCTCCGCCG 60.586 66.667 0.00 0.00 0.00 6.46
3103 3627 1.227380 CTCACCACATAGCTCCGCC 60.227 63.158 0.00 0.00 0.00 6.13
3104 3628 1.884926 GCTCACCACATAGCTCCGC 60.885 63.158 0.00 0.00 35.80 5.54
3105 3629 0.529337 CAGCTCACCACATAGCTCCG 60.529 60.000 0.00 0.00 45.92 4.63
3106 3630 0.179062 CCAGCTCACCACATAGCTCC 60.179 60.000 0.00 0.00 45.92 4.70
3107 3631 0.179062 CCCAGCTCACCACATAGCTC 60.179 60.000 0.00 0.00 45.92 4.09
3109 3633 1.153086 CCCCAGCTCACCACATAGC 60.153 63.158 0.00 0.00 39.08 2.97
3110 3634 1.528824 CCCCCAGCTCACCACATAG 59.471 63.158 0.00 0.00 0.00 2.23
3111 3635 3.739922 CCCCCAGCTCACCACATA 58.260 61.111 0.00 0.00 0.00 2.29
3141 3665 1.507140 TATCTACAAGGCTGTGGGGG 58.493 55.000 0.00 0.00 36.96 5.40
3142 3666 3.496870 GGAATATCTACAAGGCTGTGGGG 60.497 52.174 0.00 0.00 36.96 4.96
3143 3667 3.392616 AGGAATATCTACAAGGCTGTGGG 59.607 47.826 0.00 0.00 36.96 4.61
3144 3668 4.101585 TCAGGAATATCTACAAGGCTGTGG 59.898 45.833 0.00 0.00 36.96 4.17
3145 3669 5.282055 TCAGGAATATCTACAAGGCTGTG 57.718 43.478 0.00 0.00 36.96 3.66
3146 3670 5.663106 TCTTCAGGAATATCTACAAGGCTGT 59.337 40.000 0.00 0.00 39.75 4.40
3147 3671 6.166984 TCTTCAGGAATATCTACAAGGCTG 57.833 41.667 0.00 0.00 0.00 4.85
3148 3672 7.385894 AATCTTCAGGAATATCTACAAGGCT 57.614 36.000 0.00 0.00 0.00 4.58
3149 3673 8.457238 AAAATCTTCAGGAATATCTACAAGGC 57.543 34.615 0.00 0.00 0.00 4.35
3173 3697 7.093509 CCCTAAGCTAAGCCCTTCAAATAAAAA 60.094 37.037 0.00 0.00 0.00 1.94
3174 3698 6.379988 CCCTAAGCTAAGCCCTTCAAATAAAA 59.620 38.462 0.00 0.00 0.00 1.52
3175 3699 5.891551 CCCTAAGCTAAGCCCTTCAAATAAA 59.108 40.000 0.00 0.00 0.00 1.40
3176 3700 5.192923 TCCCTAAGCTAAGCCCTTCAAATAA 59.807 40.000 0.00 0.00 0.00 1.40
3177 3701 4.724798 TCCCTAAGCTAAGCCCTTCAAATA 59.275 41.667 0.00 0.00 0.00 1.40
3178 3702 3.527665 TCCCTAAGCTAAGCCCTTCAAAT 59.472 43.478 0.00 0.00 0.00 2.32
3179 3703 2.916934 TCCCTAAGCTAAGCCCTTCAAA 59.083 45.455 0.00 0.00 0.00 2.69
3180 3704 2.557869 TCCCTAAGCTAAGCCCTTCAA 58.442 47.619 0.00 0.00 0.00 2.69
3181 3705 2.263895 TCCCTAAGCTAAGCCCTTCA 57.736 50.000 0.00 0.00 0.00 3.02
3182 3706 3.646736 TTTCCCTAAGCTAAGCCCTTC 57.353 47.619 0.00 0.00 0.00 3.46
3183 3707 4.397919 TTTTTCCCTAAGCTAAGCCCTT 57.602 40.909 0.00 0.00 0.00 3.95
3184 3708 4.609866 ATTTTTCCCTAAGCTAAGCCCT 57.390 40.909 0.00 0.00 0.00 5.19
3185 3709 5.221263 GCTAATTTTTCCCTAAGCTAAGCCC 60.221 44.000 0.00 0.00 0.00 5.19
3186 3710 5.505819 CGCTAATTTTTCCCTAAGCTAAGCC 60.506 44.000 0.00 0.00 0.00 4.35
3187 3711 5.066117 ACGCTAATTTTTCCCTAAGCTAAGC 59.934 40.000 0.00 0.00 0.00 3.09
3188 3712 6.679327 ACGCTAATTTTTCCCTAAGCTAAG 57.321 37.500 0.00 0.00 0.00 2.18
3189 3713 7.309920 CAAACGCTAATTTTTCCCTAAGCTAA 58.690 34.615 0.00 0.00 0.00 3.09
3190 3714 6.127842 CCAAACGCTAATTTTTCCCTAAGCTA 60.128 38.462 0.00 0.00 0.00 3.32
3191 3715 5.336451 CCAAACGCTAATTTTTCCCTAAGCT 60.336 40.000 0.00 0.00 0.00 3.74
3192 3716 4.862574 CCAAACGCTAATTTTTCCCTAAGC 59.137 41.667 0.00 0.00 0.00 3.09
3193 3717 4.862574 GCCAAACGCTAATTTTTCCCTAAG 59.137 41.667 0.00 0.00 0.00 2.18
3194 3718 4.322123 GGCCAAACGCTAATTTTTCCCTAA 60.322 41.667 0.00 0.00 37.74 2.69
3195 3719 3.193903 GGCCAAACGCTAATTTTTCCCTA 59.806 43.478 0.00 0.00 37.74 3.53
3196 3720 2.028476 GGCCAAACGCTAATTTTTCCCT 60.028 45.455 0.00 0.00 37.74 4.20
3197 3721 2.343101 GGCCAAACGCTAATTTTTCCC 58.657 47.619 0.00 0.00 37.74 3.97
3198 3722 2.343101 GGGCCAAACGCTAATTTTTCC 58.657 47.619 4.39 0.00 37.74 3.13
3199 3723 2.343101 GGGGCCAAACGCTAATTTTTC 58.657 47.619 4.39 0.00 37.74 2.29
3200 3724 1.002659 GGGGGCCAAACGCTAATTTTT 59.997 47.619 4.39 0.00 37.74 1.94
3201 3725 0.611200 GGGGGCCAAACGCTAATTTT 59.389 50.000 4.39 0.00 37.74 1.82
3202 3726 2.282827 GGGGGCCAAACGCTAATTT 58.717 52.632 4.39 0.00 37.74 1.82
3203 3727 4.027884 GGGGGCCAAACGCTAATT 57.972 55.556 4.39 0.00 37.74 1.40
3519 4043 7.332430 TGTTTATTTCATACCTCGTAACCAGTG 59.668 37.037 0.00 0.00 0.00 3.66
3520 4044 7.332678 GTGTTTATTTCATACCTCGTAACCAGT 59.667 37.037 0.00 0.00 0.00 4.00
3521 4045 7.201582 GGTGTTTATTTCATACCTCGTAACCAG 60.202 40.741 0.00 0.00 0.00 4.00
3522 4046 6.594937 GGTGTTTATTTCATACCTCGTAACCA 59.405 38.462 0.00 0.00 0.00 3.67
3523 4047 6.820152 AGGTGTTTATTTCATACCTCGTAACC 59.180 38.462 0.00 0.00 37.15 2.85
3524 4048 7.838771 AGGTGTTTATTTCATACCTCGTAAC 57.161 36.000 0.00 0.00 37.15 2.50
3525 4049 9.537192 CATAGGTGTTTATTTCATACCTCGTAA 57.463 33.333 0.00 0.00 41.67 3.18
3526 4050 8.916062 TCATAGGTGTTTATTTCATACCTCGTA 58.084 33.333 0.00 0.00 41.67 3.43
3527 4051 7.788026 TCATAGGTGTTTATTTCATACCTCGT 58.212 34.615 0.00 0.00 41.67 4.18
3528 4052 7.926555 ACTCATAGGTGTTTATTTCATACCTCG 59.073 37.037 0.00 0.00 41.67 4.63
3535 4059 9.878667 TCGATTTACTCATAGGTGTTTATTTCA 57.121 29.630 0.00 0.00 0.00 2.69
3537 4061 9.886132 AGTCGATTTACTCATAGGTGTTTATTT 57.114 29.630 0.00 0.00 0.00 1.40
3538 4062 9.886132 AAGTCGATTTACTCATAGGTGTTTATT 57.114 29.630 0.00 0.00 0.00 1.40
3539 4063 9.530633 GAAGTCGATTTACTCATAGGTGTTTAT 57.469 33.333 0.00 0.00 0.00 1.40
3540 4064 8.746530 AGAAGTCGATTTACTCATAGGTGTTTA 58.253 33.333 0.00 0.00 0.00 2.01
3541 4065 7.612677 AGAAGTCGATTTACTCATAGGTGTTT 58.387 34.615 0.00 0.00 0.00 2.83
3542 4066 7.171630 AGAAGTCGATTTACTCATAGGTGTT 57.828 36.000 0.00 0.00 0.00 3.32
3543 4067 6.777213 AGAAGTCGATTTACTCATAGGTGT 57.223 37.500 0.00 0.00 0.00 4.16
3544 4068 6.697892 GGAAGAAGTCGATTTACTCATAGGTG 59.302 42.308 0.00 0.00 0.00 4.00
3545 4069 6.380274 TGGAAGAAGTCGATTTACTCATAGGT 59.620 38.462 0.00 0.00 0.00 3.08
3546 4070 6.697892 GTGGAAGAAGTCGATTTACTCATAGG 59.302 42.308 0.00 0.00 0.00 2.57
3547 4071 7.258441 TGTGGAAGAAGTCGATTTACTCATAG 58.742 38.462 0.00 0.00 0.00 2.23
3548 4072 7.165460 TGTGGAAGAAGTCGATTTACTCATA 57.835 36.000 0.00 0.00 0.00 2.15
3549 4073 6.037786 TGTGGAAGAAGTCGATTTACTCAT 57.962 37.500 0.00 0.00 0.00 2.90
3550 4074 5.462530 TGTGGAAGAAGTCGATTTACTCA 57.537 39.130 0.00 0.00 0.00 3.41
3551 4075 6.100004 TGATGTGGAAGAAGTCGATTTACTC 58.900 40.000 0.00 0.00 0.00 2.59
3552 4076 6.037786 TGATGTGGAAGAAGTCGATTTACT 57.962 37.500 0.00 0.00 0.00 2.24
3553 4077 6.534934 GTTGATGTGGAAGAAGTCGATTTAC 58.465 40.000 0.00 0.00 0.00 2.01
3554 4078 5.347635 CGTTGATGTGGAAGAAGTCGATTTA 59.652 40.000 0.00 0.00 0.00 1.40
3555 4079 4.152402 CGTTGATGTGGAAGAAGTCGATTT 59.848 41.667 0.00 0.00 0.00 2.17
3556 4080 3.679980 CGTTGATGTGGAAGAAGTCGATT 59.320 43.478 0.00 0.00 0.00 3.34
3557 4081 3.254060 CGTTGATGTGGAAGAAGTCGAT 58.746 45.455 0.00 0.00 0.00 3.59
3558 4082 2.672714 CGTTGATGTGGAAGAAGTCGA 58.327 47.619 0.00 0.00 0.00 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.