Multiple sequence alignment - TraesCS2B01G023700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G023700 chr2B 100.000 2649 0 0 1 2649 11017632 11020280 0.000000e+00 4892.0
1 TraesCS2B01G023700 chr5D 91.200 1000 73 8 1658 2649 564928501 564927509 0.000000e+00 1345.0
2 TraesCS2B01G023700 chr7D 89.890 999 89 8 1658 2649 574911321 574910328 0.000000e+00 1275.0
3 TraesCS2B01G023700 chr6D 89.774 1017 74 9 1658 2645 446958129 446959144 0.000000e+00 1275.0
4 TraesCS2B01G023700 chr4D 89.401 1019 80 6 1655 2649 35127329 35128343 0.000000e+00 1258.0
5 TraesCS2B01G023700 chr3D 89.111 1001 73 14 1658 2649 19313743 19314716 0.000000e+00 1212.0
6 TraesCS2B01G023700 chr3D 86.982 338 31 10 1658 1991 143236020 143235692 4.170000e-98 368.0
7 TraesCS2B01G023700 chr3D 85.674 356 35 11 1658 2002 246588561 246588211 6.970000e-96 361.0
8 TraesCS2B01G023700 chr3D 96.629 89 3 0 1044 1132 611746433 611746345 5.910000e-32 148.0
9 TraesCS2B01G023700 chr6A 88.353 996 92 15 1658 2649 520880248 520881223 0.000000e+00 1175.0
10 TraesCS2B01G023700 chr6A 86.368 1027 98 26 1658 2649 53296370 53295351 0.000000e+00 1083.0
11 TraesCS2B01G023700 chr6A 87.329 292 27 8 8 289 608676960 608677251 2.540000e-85 326.0
12 TraesCS2B01G023700 chr5B 89.521 897 81 6 1658 2548 469126404 469127293 0.000000e+00 1123.0
13 TraesCS2B01G023700 chr3A 86.957 1012 109 15 1658 2649 747328711 747329719 0.000000e+00 1116.0
14 TraesCS2B01G023700 chr3A 87.683 341 32 7 1658 1993 475707130 475707465 3.200000e-104 388.0
15 TraesCS2B01G023700 chr6B 89.988 869 62 10 1798 2649 693033822 693032962 0.000000e+00 1099.0
16 TraesCS2B01G023700 chr6B 82.432 74 12 1 530 602 346350605 346350532 2.200000e-06 63.9
17 TraesCS2B01G023700 chr2D 92.939 694 49 0 1956 2649 55632494 55631801 0.000000e+00 1011.0
18 TraesCS2B01G023700 chr2D 95.749 494 19 2 1024 1517 261704 262195 0.000000e+00 795.0
19 TraesCS2B01G023700 chr2D 85.804 317 33 5 3 308 598270869 598270554 2.540000e-85 326.0
20 TraesCS2B01G023700 chr4A 89.754 771 69 5 1885 2649 714924563 714925329 0.000000e+00 977.0
21 TraesCS2B01G023700 chr4A 88.450 329 28 9 1658 1985 704631143 704631462 3.200000e-104 388.0
22 TraesCS2B01G023700 chr2A 92.109 697 27 9 897 1579 273100 272418 0.000000e+00 957.0
23 TraesCS2B01G023700 chr2A 78.736 522 33 35 424 886 273852 273350 7.220000e-71 278.0
24 TraesCS2B01G023700 chr2A 87.500 56 7 0 547 602 679996618 679996673 6.120000e-07 65.8
25 TraesCS2B01G023700 chr7A 88.462 338 32 4 1658 1991 24487628 24487962 4.110000e-108 401.0
26 TraesCS2B01G023700 chr7B 87.172 343 33 6 1658 1991 490704199 490703859 1.920000e-101 379.0
27 TraesCS2B01G023700 chr3B 87.273 55 6 1 548 602 586730590 586730537 7.920000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G023700 chr2B 11017632 11020280 2648 False 4892.0 4892 100.0000 1 2649 1 chr2B.!!$F1 2648
1 TraesCS2B01G023700 chr5D 564927509 564928501 992 True 1345.0 1345 91.2000 1658 2649 1 chr5D.!!$R1 991
2 TraesCS2B01G023700 chr7D 574910328 574911321 993 True 1275.0 1275 89.8900 1658 2649 1 chr7D.!!$R1 991
3 TraesCS2B01G023700 chr6D 446958129 446959144 1015 False 1275.0 1275 89.7740 1658 2645 1 chr6D.!!$F1 987
4 TraesCS2B01G023700 chr4D 35127329 35128343 1014 False 1258.0 1258 89.4010 1655 2649 1 chr4D.!!$F1 994
5 TraesCS2B01G023700 chr3D 19313743 19314716 973 False 1212.0 1212 89.1110 1658 2649 1 chr3D.!!$F1 991
6 TraesCS2B01G023700 chr6A 520880248 520881223 975 False 1175.0 1175 88.3530 1658 2649 1 chr6A.!!$F1 991
7 TraesCS2B01G023700 chr6A 53295351 53296370 1019 True 1083.0 1083 86.3680 1658 2649 1 chr6A.!!$R1 991
8 TraesCS2B01G023700 chr5B 469126404 469127293 889 False 1123.0 1123 89.5210 1658 2548 1 chr5B.!!$F1 890
9 TraesCS2B01G023700 chr3A 747328711 747329719 1008 False 1116.0 1116 86.9570 1658 2649 1 chr3A.!!$F2 991
10 TraesCS2B01G023700 chr6B 693032962 693033822 860 True 1099.0 1099 89.9880 1798 2649 1 chr6B.!!$R2 851
11 TraesCS2B01G023700 chr2D 55631801 55632494 693 True 1011.0 1011 92.9390 1956 2649 1 chr2D.!!$R1 693
12 TraesCS2B01G023700 chr4A 714924563 714925329 766 False 977.0 977 89.7540 1885 2649 1 chr4A.!!$F2 764
13 TraesCS2B01G023700 chr2A 272418 273852 1434 True 617.5 957 85.4225 424 1579 2 chr2A.!!$R1 1155

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
321 322 0.264359 AGGGGAGCTCTCATGCTAGT 59.736 55.0 17.22 0.0 44.17 2.57 F
1254 1560 0.320421 TCTTCTGCTACGCCAACACC 60.320 55.0 0.00 0.0 0.00 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1479 1791 0.391263 CCCAGAAGTAGTTCCCGCAC 60.391 60.0 6.68 0.0 32.48 5.34 R
2609 3055 0.534203 GAACGTGAAGTTGGAGGCCA 60.534 55.0 5.01 0.0 44.35 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 4.605967 CCGCGCACACCACAACAC 62.606 66.667 8.75 0.00 0.00 3.32
33 34 4.605967 CGCGCACACCACAACACC 62.606 66.667 8.75 0.00 0.00 4.16
34 35 4.605967 GCGCACACCACAACACCG 62.606 66.667 0.30 0.00 0.00 4.94
35 36 3.199190 CGCACACCACAACACCGT 61.199 61.111 0.00 0.00 0.00 4.83
36 37 2.713154 GCACACCACAACACCGTC 59.287 61.111 0.00 0.00 0.00 4.79
37 38 2.830285 GCACACCACAACACCGTCC 61.830 63.158 0.00 0.00 0.00 4.79
38 39 2.184167 CACACCACAACACCGTCCC 61.184 63.158 0.00 0.00 0.00 4.46
39 40 2.372074 ACACCACAACACCGTCCCT 61.372 57.895 0.00 0.00 0.00 4.20
40 41 1.891919 CACCACAACACCGTCCCTG 60.892 63.158 0.00 0.00 0.00 4.45
41 42 2.978010 CCACAACACCGTCCCTGC 60.978 66.667 0.00 0.00 0.00 4.85
42 43 3.345808 CACAACACCGTCCCTGCG 61.346 66.667 0.00 0.00 0.00 5.18
61 62 2.202797 CCTCGCTAGTGCACGCAT 60.203 61.111 12.01 0.00 39.64 4.73
62 63 2.233654 CCTCGCTAGTGCACGCATC 61.234 63.158 12.01 1.31 39.64 3.91
63 64 2.202743 TCGCTAGTGCACGCATCC 60.203 61.111 12.01 0.00 39.64 3.51
64 65 3.264897 CGCTAGTGCACGCATCCC 61.265 66.667 12.01 0.00 39.64 3.85
65 66 2.187946 GCTAGTGCACGCATCCCT 59.812 61.111 12.01 0.00 39.41 4.20
66 67 2.176273 GCTAGTGCACGCATCCCTG 61.176 63.158 12.01 0.00 39.41 4.45
67 68 2.125147 TAGTGCACGCATCCCTGC 60.125 61.111 12.01 0.00 45.31 4.85
68 69 3.680620 TAGTGCACGCATCCCTGCC 62.681 63.158 12.01 0.00 46.07 4.85
72 73 4.415150 CACGCATCCCTGCCACCT 62.415 66.667 0.00 0.00 46.07 4.00
73 74 4.101448 ACGCATCCCTGCCACCTC 62.101 66.667 0.00 0.00 46.07 3.85
76 77 4.864334 CATCCCTGCCACCTCGCC 62.864 72.222 0.00 0.00 0.00 5.54
80 81 4.767255 CCTGCCACCTCGCCACTC 62.767 72.222 0.00 0.00 0.00 3.51
81 82 4.767255 CTGCCACCTCGCCACTCC 62.767 72.222 0.00 0.00 0.00 3.85
83 84 4.767255 GCCACCTCGCCACTCCTG 62.767 72.222 0.00 0.00 0.00 3.86
84 85 3.314331 CCACCTCGCCACTCCTGT 61.314 66.667 0.00 0.00 0.00 4.00
85 86 2.047844 CACCTCGCCACTCCTGTG 60.048 66.667 0.00 0.00 43.45 3.66
86 87 2.203640 ACCTCGCCACTCCTGTGA 60.204 61.111 0.00 0.00 46.55 3.58
87 88 2.262915 CCTCGCCACTCCTGTGAC 59.737 66.667 0.00 0.00 46.55 3.67
88 89 2.262915 CTCGCCACTCCTGTGACC 59.737 66.667 0.00 0.00 46.55 4.02
89 90 3.302347 CTCGCCACTCCTGTGACCC 62.302 68.421 0.00 0.00 46.55 4.46
90 91 4.742201 CGCCACTCCTGTGACCCG 62.742 72.222 0.00 0.00 46.55 5.28
92 93 4.742201 CCACTCCTGTGACCCGCG 62.742 72.222 0.00 0.00 46.55 6.46
119 120 2.187424 CAGCAGAGAGCCTCAGCC 59.813 66.667 13.38 0.79 42.66 4.85
120 121 3.459965 AGCAGAGAGCCTCAGCCG 61.460 66.667 13.38 0.00 42.66 5.52
121 122 3.456365 GCAGAGAGCCTCAGCCGA 61.456 66.667 7.93 0.00 37.09 5.54
122 123 2.806929 CAGAGAGCCTCAGCCGAG 59.193 66.667 0.00 0.00 41.25 4.63
123 124 1.752310 CAGAGAGCCTCAGCCGAGA 60.752 63.158 0.00 0.00 42.34 4.04
124 125 1.752694 AGAGAGCCTCAGCCGAGAC 60.753 63.158 0.00 0.00 42.34 3.36
125 126 2.757917 AGAGCCTCAGCCGAGACC 60.758 66.667 0.00 0.00 42.34 3.85
126 127 3.071206 GAGCCTCAGCCGAGACCA 61.071 66.667 0.00 0.00 42.34 4.02
127 128 2.604686 AGCCTCAGCCGAGACCAA 60.605 61.111 0.00 0.00 42.34 3.67
128 129 2.435059 GCCTCAGCCGAGACCAAC 60.435 66.667 0.00 0.00 42.34 3.77
129 130 3.059982 CCTCAGCCGAGACCAACA 58.940 61.111 0.00 0.00 42.34 3.33
130 131 1.079543 CCTCAGCCGAGACCAACAG 60.080 63.158 0.00 0.00 42.34 3.16
131 132 1.739562 CTCAGCCGAGACCAACAGC 60.740 63.158 0.00 0.00 42.34 4.40
132 133 2.743928 CAGCCGAGACCAACAGCC 60.744 66.667 0.00 0.00 0.00 4.85
133 134 4.021925 AGCCGAGACCAACAGCCC 62.022 66.667 0.00 0.00 0.00 5.19
135 136 4.410400 CCGAGACCAACAGCCCCC 62.410 72.222 0.00 0.00 0.00 5.40
136 137 4.760047 CGAGACCAACAGCCCCCG 62.760 72.222 0.00 0.00 0.00 5.73
163 164 4.089983 GCTCGAGCGAGGGTAAAC 57.910 61.111 23.61 0.21 42.19 2.01
164 165 1.511768 GCTCGAGCGAGGGTAAACT 59.488 57.895 23.61 0.00 42.19 2.66
165 166 0.802607 GCTCGAGCGAGGGTAAACTG 60.803 60.000 23.61 0.00 42.19 3.16
166 167 0.802607 CTCGAGCGAGGGTAAACTGC 60.803 60.000 11.83 0.00 38.51 4.40
167 168 1.215647 CGAGCGAGGGTAAACTGCT 59.784 57.895 0.00 0.00 38.89 4.24
168 169 0.802607 CGAGCGAGGGTAAACTGCTC 60.803 60.000 2.57 2.57 46.48 4.26
169 170 0.460459 GAGCGAGGGTAAACTGCTCC 60.460 60.000 1.21 0.00 44.76 4.70
170 171 1.810030 GCGAGGGTAAACTGCTCCG 60.810 63.158 0.00 0.00 0.00 4.63
171 172 1.810030 CGAGGGTAAACTGCTCCGC 60.810 63.158 0.00 0.00 0.00 5.54
172 173 1.597461 GAGGGTAAACTGCTCCGCT 59.403 57.895 0.00 0.00 0.00 5.52
173 174 0.741221 GAGGGTAAACTGCTCCGCTG 60.741 60.000 0.00 0.00 0.00 5.18
174 175 2.399356 GGGTAAACTGCTCCGCTGC 61.399 63.158 0.00 0.00 0.00 5.25
175 176 2.399356 GGTAAACTGCTCCGCTGCC 61.399 63.158 0.00 0.00 0.00 4.85
176 177 1.671054 GTAAACTGCTCCGCTGCCA 60.671 57.895 0.00 0.00 0.00 4.92
177 178 1.375908 TAAACTGCTCCGCTGCCAG 60.376 57.895 0.00 0.00 0.00 4.85
181 182 4.648626 TGCTCCGCTGCCAGCTTT 62.649 61.111 15.80 0.00 39.60 3.51
182 183 4.112341 GCTCCGCTGCCAGCTTTG 62.112 66.667 15.80 5.29 39.60 2.77
183 184 4.112341 CTCCGCTGCCAGCTTTGC 62.112 66.667 15.80 0.00 39.60 3.68
188 189 4.456253 CTGCCAGCTTTGCGCGAG 62.456 66.667 12.10 4.33 45.59 5.03
243 244 3.854669 CGGGGTGGGCTCTGCTAG 61.855 72.222 0.00 0.00 0.00 3.42
259 260 4.347453 AGCCGGCGCTGCTTTTTG 62.347 61.111 23.20 1.53 46.19 2.44
262 263 4.347453 CGGCGCTGCTTTTTGGCT 62.347 61.111 7.64 0.00 0.00 4.75
263 264 2.431430 GGCGCTGCTTTTTGGCTC 60.431 61.111 7.64 0.00 0.00 4.70
264 265 2.431430 GCGCTGCTTTTTGGCTCC 60.431 61.111 0.00 0.00 0.00 4.70
265 266 2.259511 CGCTGCTTTTTGGCTCCC 59.740 61.111 0.00 0.00 0.00 4.30
266 267 2.259511 GCTGCTTTTTGGCTCCCG 59.740 61.111 0.00 0.00 0.00 5.14
267 268 2.964978 CTGCTTTTTGGCTCCCGG 59.035 61.111 0.00 0.00 0.00 5.73
268 269 2.600173 TGCTTTTTGGCTCCCGGG 60.600 61.111 16.85 16.85 0.00 5.73
269 270 4.069232 GCTTTTTGGCTCCCGGGC 62.069 66.667 18.49 4.47 41.27 6.13
295 296 3.827898 GGAGGCGACACGGGAGAG 61.828 72.222 0.00 0.00 0.00 3.20
296 297 2.750637 GAGGCGACACGGGAGAGA 60.751 66.667 0.00 0.00 0.00 3.10
297 298 2.752238 AGGCGACACGGGAGAGAG 60.752 66.667 0.00 0.00 0.00 3.20
298 299 3.827898 GGCGACACGGGAGAGAGG 61.828 72.222 0.00 0.00 0.00 3.69
299 300 2.750637 GCGACACGGGAGAGAGGA 60.751 66.667 0.00 0.00 0.00 3.71
300 301 2.766400 GCGACACGGGAGAGAGGAG 61.766 68.421 0.00 0.00 0.00 3.69
301 302 2.115911 CGACACGGGAGAGAGGAGG 61.116 68.421 0.00 0.00 0.00 4.30
302 303 1.303615 GACACGGGAGAGAGGAGGA 59.696 63.158 0.00 0.00 0.00 3.71
303 304 0.750182 GACACGGGAGAGAGGAGGAG 60.750 65.000 0.00 0.00 0.00 3.69
304 305 1.454847 CACGGGAGAGAGGAGGAGG 60.455 68.421 0.00 0.00 0.00 4.30
305 306 2.197324 CGGGAGAGAGGAGGAGGG 59.803 72.222 0.00 0.00 0.00 4.30
306 307 2.612251 GGGAGAGAGGAGGAGGGG 59.388 72.222 0.00 0.00 0.00 4.79
307 308 2.015726 GGGAGAGAGGAGGAGGGGA 61.016 68.421 0.00 0.00 0.00 4.81
308 309 1.541672 GGAGAGAGGAGGAGGGGAG 59.458 68.421 0.00 0.00 0.00 4.30
309 310 1.152546 GAGAGAGGAGGAGGGGAGC 60.153 68.421 0.00 0.00 0.00 4.70
310 311 1.625565 AGAGAGGAGGAGGGGAGCT 60.626 63.158 0.00 0.00 0.00 4.09
311 312 1.152546 GAGAGGAGGAGGGGAGCTC 60.153 68.421 4.71 4.71 0.00 4.09
312 313 1.625565 AGAGGAGGAGGGGAGCTCT 60.626 63.158 14.64 0.00 0.00 4.09
313 314 1.152546 GAGGAGGAGGGGAGCTCTC 60.153 68.421 14.64 10.01 0.00 3.20
314 315 1.938596 AGGAGGAGGGGAGCTCTCA 60.939 63.158 17.22 0.00 33.18 3.27
315 316 1.235696 GGAGGAGGGGAGCTCTCAT 59.764 63.158 17.22 8.69 33.18 2.90
316 317 1.120795 GGAGGAGGGGAGCTCTCATG 61.121 65.000 17.22 0.00 33.18 3.07
317 318 1.757423 GAGGAGGGGAGCTCTCATGC 61.757 65.000 17.22 14.76 33.18 4.06
319 320 0.470833 GGAGGGGAGCTCTCATGCTA 60.471 60.000 17.22 0.00 44.17 3.49
320 321 0.968405 GAGGGGAGCTCTCATGCTAG 59.032 60.000 17.22 0.00 44.17 3.42
321 322 0.264359 AGGGGAGCTCTCATGCTAGT 59.736 55.000 17.22 0.00 44.17 2.57
322 323 0.392336 GGGGAGCTCTCATGCTAGTG 59.608 60.000 17.22 0.00 44.17 2.74
323 324 1.118838 GGGAGCTCTCATGCTAGTGT 58.881 55.000 14.64 0.00 44.17 3.55
324 325 1.202510 GGGAGCTCTCATGCTAGTGTG 60.203 57.143 14.64 0.00 44.17 3.82
325 326 1.753649 GGAGCTCTCATGCTAGTGTGA 59.246 52.381 14.64 0.00 44.17 3.58
326 327 2.364970 GGAGCTCTCATGCTAGTGTGAT 59.635 50.000 14.64 0.00 44.17 3.06
327 328 3.552684 GGAGCTCTCATGCTAGTGTGATC 60.553 52.174 14.64 0.00 44.17 2.92
328 329 3.298619 AGCTCTCATGCTAGTGTGATCT 58.701 45.455 0.00 0.00 42.10 2.75
329 330 3.705579 AGCTCTCATGCTAGTGTGATCTT 59.294 43.478 0.00 0.00 42.10 2.40
330 331 4.050553 GCTCTCATGCTAGTGTGATCTTC 58.949 47.826 0.00 0.00 0.00 2.87
331 332 4.441217 GCTCTCATGCTAGTGTGATCTTCA 60.441 45.833 0.00 0.00 0.00 3.02
332 333 5.739647 GCTCTCATGCTAGTGTGATCTTCAT 60.740 44.000 0.00 0.00 0.00 2.57
333 334 6.231258 TCTCATGCTAGTGTGATCTTCATT 57.769 37.500 0.00 0.00 0.00 2.57
334 335 6.279123 TCTCATGCTAGTGTGATCTTCATTC 58.721 40.000 0.00 0.00 0.00 2.67
335 336 6.097981 TCTCATGCTAGTGTGATCTTCATTCT 59.902 38.462 0.00 0.00 0.00 2.40
336 337 7.286316 TCTCATGCTAGTGTGATCTTCATTCTA 59.714 37.037 0.00 0.00 0.00 2.10
337 338 7.785033 TCATGCTAGTGTGATCTTCATTCTAA 58.215 34.615 0.00 0.00 0.00 2.10
338 339 7.924947 TCATGCTAGTGTGATCTTCATTCTAAG 59.075 37.037 0.00 0.00 0.00 2.18
339 340 6.577103 TGCTAGTGTGATCTTCATTCTAAGG 58.423 40.000 0.00 0.00 0.00 2.69
340 341 6.155221 TGCTAGTGTGATCTTCATTCTAAGGT 59.845 38.462 0.00 0.00 0.00 3.50
341 342 7.044798 GCTAGTGTGATCTTCATTCTAAGGTT 58.955 38.462 0.00 0.00 0.00 3.50
342 343 7.550906 GCTAGTGTGATCTTCATTCTAAGGTTT 59.449 37.037 0.00 0.00 0.00 3.27
343 344 7.913674 AGTGTGATCTTCATTCTAAGGTTTC 57.086 36.000 0.00 0.00 0.00 2.78
344 345 7.684529 AGTGTGATCTTCATTCTAAGGTTTCT 58.315 34.615 0.00 0.00 0.00 2.52
345 346 8.816894 AGTGTGATCTTCATTCTAAGGTTTCTA 58.183 33.333 0.00 0.00 0.00 2.10
346 347 9.436957 GTGTGATCTTCATTCTAAGGTTTCTAA 57.563 33.333 0.00 0.00 0.00 2.10
347 348 9.436957 TGTGATCTTCATTCTAAGGTTTCTAAC 57.563 33.333 0.00 0.00 0.00 2.34
348 349 9.660180 GTGATCTTCATTCTAAGGTTTCTAACT 57.340 33.333 0.00 0.00 0.00 2.24
354 355 8.788325 TCATTCTAAGGTTTCTAACTTTAGGC 57.212 34.615 16.47 0.00 45.70 3.93
355 356 8.603304 TCATTCTAAGGTTTCTAACTTTAGGCT 58.397 33.333 16.47 0.00 45.70 4.58
356 357 8.669243 CATTCTAAGGTTTCTAACTTTAGGCTG 58.331 37.037 16.47 12.04 45.70 4.85
357 358 6.171213 TCTAAGGTTTCTAACTTTAGGCTGC 58.829 40.000 16.47 0.00 45.70 5.25
358 359 3.687125 AGGTTTCTAACTTTAGGCTGCC 58.313 45.455 11.65 11.65 0.00 4.85
359 360 3.073946 AGGTTTCTAACTTTAGGCTGCCA 59.926 43.478 22.65 3.92 0.00 4.92
360 361 3.440522 GGTTTCTAACTTTAGGCTGCCAG 59.559 47.826 22.65 12.25 0.00 4.85
361 362 4.072839 GTTTCTAACTTTAGGCTGCCAGT 58.927 43.478 22.65 12.96 0.00 4.00
362 363 3.334583 TCTAACTTTAGGCTGCCAGTG 57.665 47.619 22.65 10.19 0.00 3.66
363 364 1.740025 CTAACTTTAGGCTGCCAGTGC 59.260 52.381 22.65 0.00 38.26 4.40
364 365 1.237285 AACTTTAGGCTGCCAGTGCG 61.237 55.000 22.65 7.42 41.78 5.34
365 366 1.375908 CTTTAGGCTGCCAGTGCGA 60.376 57.895 22.65 0.00 41.78 5.10
366 367 1.364626 CTTTAGGCTGCCAGTGCGAG 61.365 60.000 22.65 5.84 41.78 5.03
367 368 1.826340 TTTAGGCTGCCAGTGCGAGA 61.826 55.000 22.65 0.00 41.78 4.04
368 369 1.617018 TTAGGCTGCCAGTGCGAGAT 61.617 55.000 22.65 0.00 41.78 2.75
369 370 2.302199 TAGGCTGCCAGTGCGAGATG 62.302 60.000 22.65 0.00 41.78 2.90
370 371 2.435586 GCTGCCAGTGCGAGATGT 60.436 61.111 0.00 0.00 41.78 3.06
371 372 2.459442 GCTGCCAGTGCGAGATGTC 61.459 63.158 0.00 0.00 41.78 3.06
372 373 1.217511 CTGCCAGTGCGAGATGTCT 59.782 57.895 0.00 0.00 41.78 3.41
373 374 0.457443 CTGCCAGTGCGAGATGTCTA 59.543 55.000 0.00 0.00 41.78 2.59
374 375 1.068281 CTGCCAGTGCGAGATGTCTAT 59.932 52.381 0.00 0.00 41.78 1.98
375 376 2.294512 CTGCCAGTGCGAGATGTCTATA 59.705 50.000 0.00 0.00 41.78 1.31
376 377 2.294512 TGCCAGTGCGAGATGTCTATAG 59.705 50.000 0.00 0.00 41.78 1.31
377 378 2.352225 GCCAGTGCGAGATGTCTATAGG 60.352 54.545 0.00 0.00 0.00 2.57
378 379 2.230025 CCAGTGCGAGATGTCTATAGGG 59.770 54.545 0.00 0.00 0.00 3.53
379 380 1.889829 AGTGCGAGATGTCTATAGGGC 59.110 52.381 0.00 0.00 0.00 5.19
380 381 1.889829 GTGCGAGATGTCTATAGGGCT 59.110 52.381 0.00 0.00 0.00 5.19
381 382 3.082548 GTGCGAGATGTCTATAGGGCTA 58.917 50.000 0.00 0.00 0.00 3.93
382 383 3.697045 GTGCGAGATGTCTATAGGGCTAT 59.303 47.826 0.00 0.00 0.00 2.97
383 384 4.158764 GTGCGAGATGTCTATAGGGCTATT 59.841 45.833 0.00 0.00 0.00 1.73
384 385 4.158579 TGCGAGATGTCTATAGGGCTATTG 59.841 45.833 0.00 0.00 0.00 1.90
385 386 4.677584 CGAGATGTCTATAGGGCTATTGC 58.322 47.826 0.00 0.00 38.76 3.56
408 409 3.369921 GCAGGAGGTTGCCTTTGG 58.630 61.111 0.00 0.00 38.13 3.28
420 421 4.102113 CTTTGGCAGGAGTTGGGG 57.898 61.111 0.00 0.00 0.00 4.96
421 422 2.203625 TTTGGCAGGAGTTGGGGC 60.204 61.111 0.00 0.00 0.00 5.80
422 423 3.826265 TTTGGCAGGAGTTGGGGCC 62.826 63.158 0.00 0.00 46.58 5.80
524 525 4.875536 AGAAAGCCAAACACAACAATTTCC 59.124 37.500 0.00 0.00 0.00 3.13
525 526 3.192541 AGCCAAACACAACAATTTCCC 57.807 42.857 0.00 0.00 0.00 3.97
528 529 3.380142 CCAAACACAACAATTTCCCGAG 58.620 45.455 0.00 0.00 0.00 4.63
531 532 4.993029 AACACAACAATTTCCCGAGAAA 57.007 36.364 0.00 0.00 45.78 2.52
561 566 5.163581 ACTGAGGTGAATTTATCATGCTTGC 60.164 40.000 0.00 0.00 40.97 4.01
577 582 3.445450 TGCTTGCCAACTAAACTTGTCAA 59.555 39.130 0.00 0.00 0.00 3.18
578 583 3.796717 GCTTGCCAACTAAACTTGTCAAC 59.203 43.478 0.00 0.00 0.00 3.18
581 586 3.630312 TGCCAACTAAACTTGTCAACCTC 59.370 43.478 0.00 0.00 0.00 3.85
645 650 6.240549 AGATATTTCGGTCCTTGATCAACT 57.759 37.500 3.38 0.00 0.00 3.16
646 651 6.284459 AGATATTTCGGTCCTTGATCAACTC 58.716 40.000 3.38 0.00 0.00 3.01
647 652 4.559862 ATTTCGGTCCTTGATCAACTCT 57.440 40.909 3.38 0.00 0.00 3.24
648 653 4.351874 TTTCGGTCCTTGATCAACTCTT 57.648 40.909 3.38 0.00 0.00 2.85
649 654 5.477607 TTTCGGTCCTTGATCAACTCTTA 57.522 39.130 3.38 0.00 0.00 2.10
650 655 4.720649 TCGGTCCTTGATCAACTCTTAG 57.279 45.455 3.38 0.00 0.00 2.18
651 656 4.341487 TCGGTCCTTGATCAACTCTTAGA 58.659 43.478 3.38 0.00 0.00 2.10
652 657 4.956700 TCGGTCCTTGATCAACTCTTAGAT 59.043 41.667 3.38 0.00 0.00 1.98
674 679 3.269178 GCACAGCTAGCTCAAGAGAATT 58.731 45.455 16.15 0.00 0.00 2.17
675 680 3.063725 GCACAGCTAGCTCAAGAGAATTG 59.936 47.826 16.15 2.76 0.00 2.32
676 681 3.622163 CACAGCTAGCTCAAGAGAATTGG 59.378 47.826 16.15 1.14 0.00 3.16
678 683 4.121317 CAGCTAGCTCAAGAGAATTGGAG 58.879 47.826 16.15 0.00 0.00 3.86
679 684 3.774216 AGCTAGCTCAAGAGAATTGGAGT 59.226 43.478 12.68 0.00 0.00 3.85
680 685 4.959210 AGCTAGCTCAAGAGAATTGGAGTA 59.041 41.667 12.68 0.00 0.00 2.59
681 686 5.602145 AGCTAGCTCAAGAGAATTGGAGTAT 59.398 40.000 12.68 0.00 0.00 2.12
682 687 6.780031 AGCTAGCTCAAGAGAATTGGAGTATA 59.220 38.462 12.68 0.00 0.00 1.47
715 740 4.371786 TGCATATTCTAACTCTGCTTCGG 58.628 43.478 0.00 0.00 34.02 4.30
717 742 5.068591 TGCATATTCTAACTCTGCTTCGGTA 59.931 40.000 0.00 0.00 34.02 4.02
718 743 5.983720 GCATATTCTAACTCTGCTTCGGTAA 59.016 40.000 0.00 0.00 0.00 2.85
784 833 7.814264 AGGATGCCTAAACAATCTAATCTTG 57.186 36.000 0.00 0.00 28.47 3.02
809 858 3.346315 TGGCATCACCACTTGACTAATG 58.654 45.455 0.00 0.00 46.36 1.90
810 859 3.244875 TGGCATCACCACTTGACTAATGT 60.245 43.478 0.00 0.00 46.36 2.71
811 860 3.758554 GGCATCACCACTTGACTAATGTT 59.241 43.478 0.00 0.00 36.92 2.71
813 862 5.393962 GCATCACCACTTGACTAATGTTTC 58.606 41.667 0.00 0.00 36.92 2.78
814 863 5.182001 GCATCACCACTTGACTAATGTTTCT 59.818 40.000 0.00 0.00 36.92 2.52
815 864 6.371548 GCATCACCACTTGACTAATGTTTCTA 59.628 38.462 0.00 0.00 36.92 2.10
816 865 7.066284 GCATCACCACTTGACTAATGTTTCTAT 59.934 37.037 0.00 0.00 36.92 1.98
842 907 2.477825 CATCGCCTCACCACTCTAATG 58.522 52.381 0.00 0.00 0.00 1.90
843 908 1.847328 TCGCCTCACCACTCTAATGA 58.153 50.000 0.00 0.00 0.00 2.57
844 909 2.388735 TCGCCTCACCACTCTAATGAT 58.611 47.619 0.00 0.00 0.00 2.45
845 910 2.362397 TCGCCTCACCACTCTAATGATC 59.638 50.000 0.00 0.00 0.00 2.92
846 911 2.363680 CGCCTCACCACTCTAATGATCT 59.636 50.000 0.00 0.00 0.00 2.75
847 912 3.570125 CGCCTCACCACTCTAATGATCTA 59.430 47.826 0.00 0.00 0.00 1.98
848 913 4.038042 CGCCTCACCACTCTAATGATCTAA 59.962 45.833 0.00 0.00 0.00 2.10
849 914 5.279206 CGCCTCACCACTCTAATGATCTAAT 60.279 44.000 0.00 0.00 0.00 1.73
850 915 6.162777 GCCTCACCACTCTAATGATCTAATC 58.837 44.000 0.00 0.00 0.00 1.75
851 916 6.014669 GCCTCACCACTCTAATGATCTAATCT 60.015 42.308 0.00 0.00 0.00 2.40
852 917 7.177568 GCCTCACCACTCTAATGATCTAATCTA 59.822 40.741 0.00 0.00 0.00 1.98
853 918 9.083422 CCTCACCACTCTAATGATCTAATCTAA 57.917 37.037 0.00 0.00 0.00 2.10
856 921 9.868277 CACCACTCTAATGATCTAATCTAATCC 57.132 37.037 0.00 0.00 0.00 3.01
857 922 9.607333 ACCACTCTAATGATCTAATCTAATCCA 57.393 33.333 0.00 0.00 0.00 3.41
926 1225 4.635324 TCAGATCAGATCAGATAGCTAGCG 59.365 45.833 13.14 0.00 0.00 4.26
928 1227 2.441410 TCAGATCAGATAGCTAGCGGG 58.559 52.381 9.55 3.50 0.00 6.13
929 1228 1.476085 CAGATCAGATAGCTAGCGGGG 59.524 57.143 9.55 1.01 0.00 5.73
989 1295 2.546795 CCTAGTCAATGTCCTCATCCGC 60.547 54.545 0.00 0.00 32.56 5.54
991 1297 1.521457 TCAATGTCCTCATCCGCGC 60.521 57.895 0.00 0.00 32.56 6.86
1147 1453 2.282958 AGAGGGTCAAGACGCCGA 60.283 61.111 12.86 0.00 44.27 5.54
1154 1460 2.202610 CAAGACGCCGATGCTCGA 60.203 61.111 7.07 0.00 43.74 4.04
1206 1512 2.817056 GCAGATGCTCCCCTCCCTC 61.817 68.421 0.00 0.00 38.21 4.30
1241 1547 1.079543 CGAGGTGCAGGGTCTTCTG 60.080 63.158 0.00 0.00 37.79 3.02
1254 1560 0.320421 TCTTCTGCTACGCCAACACC 60.320 55.000 0.00 0.00 0.00 4.16
1354 1666 3.848391 GAGATCCTCGTCGCGCTCG 62.848 68.421 5.56 10.80 0.00 5.03
1473 1785 1.298413 CCTCGTAGCCATGTCGTCG 60.298 63.158 0.00 0.00 0.00 5.12
1521 1833 6.600822 GGGATGAACTCTGAAATCTGAATTGA 59.399 38.462 0.00 0.00 0.00 2.57
1524 1836 9.719279 GATGAACTCTGAAATCTGAATTGATTC 57.281 33.333 0.00 0.00 35.82 2.52
1562 1874 5.391416 CGATGCTAGAGCTAGATCGATCAAA 60.391 44.000 26.47 13.41 40.88 2.69
1566 1882 6.152492 TGCTAGAGCTAGATCGATCAAATGAT 59.848 38.462 26.47 11.97 42.66 2.45
1589 1905 9.967451 TGATTTATTTTGTACTTCTGGGATACA 57.033 29.630 0.00 0.00 39.74 2.29
1603 1919 6.412362 CTGGGATACAGCAGTAGTATTTCT 57.588 41.667 0.00 0.00 40.97 2.52
1604 1920 6.161855 TGGGATACAGCAGTAGTATTTCTG 57.838 41.667 0.00 0.00 32.60 3.02
1605 1921 5.897250 TGGGATACAGCAGTAGTATTTCTGA 59.103 40.000 0.00 0.00 32.60 3.27
1606 1922 6.382859 TGGGATACAGCAGTAGTATTTCTGAA 59.617 38.462 0.00 0.00 32.60 3.02
1607 1923 7.093068 TGGGATACAGCAGTAGTATTTCTGAAA 60.093 37.037 5.15 5.15 32.60 2.69
1608 1924 7.934120 GGGATACAGCAGTAGTATTTCTGAAAT 59.066 37.037 18.64 18.64 32.60 2.17
1609 1925 9.982651 GGATACAGCAGTAGTATTTCTGAAATA 57.017 33.333 16.71 16.71 32.60 1.40
1626 1942 8.239038 TCTGAAATACTATACAACTCTCTGGG 57.761 38.462 0.00 0.00 0.00 4.45
1627 1943 7.839705 TCTGAAATACTATACAACTCTCTGGGT 59.160 37.037 0.00 0.00 0.00 4.51
1628 1944 7.782049 TGAAATACTATACAACTCTCTGGGTG 58.218 38.462 0.00 0.00 0.00 4.61
1629 1945 7.618117 TGAAATACTATACAACTCTCTGGGTGA 59.382 37.037 0.00 0.00 0.00 4.02
1630 1946 8.554490 AAATACTATACAACTCTCTGGGTGAT 57.446 34.615 0.00 0.00 0.00 3.06
1631 1947 8.554490 AATACTATACAACTCTCTGGGTGATT 57.446 34.615 0.00 0.00 0.00 2.57
1632 1948 9.656323 AATACTATACAACTCTCTGGGTGATTA 57.344 33.333 0.00 0.00 0.00 1.75
1633 1949 7.973048 ACTATACAACTCTCTGGGTGATTAA 57.027 36.000 0.00 0.00 0.00 1.40
1634 1950 8.554490 ACTATACAACTCTCTGGGTGATTAAT 57.446 34.615 0.00 0.00 0.00 1.40
1635 1951 8.993424 ACTATACAACTCTCTGGGTGATTAATT 58.007 33.333 0.00 0.00 0.00 1.40
1636 1952 9.265901 CTATACAACTCTCTGGGTGATTAATTG 57.734 37.037 0.00 0.00 0.00 2.32
1637 1953 5.880901 ACAACTCTCTGGGTGATTAATTGT 58.119 37.500 0.00 0.00 0.00 2.71
1638 1954 6.306987 ACAACTCTCTGGGTGATTAATTGTT 58.693 36.000 0.00 0.00 0.00 2.83
1639 1955 6.777580 ACAACTCTCTGGGTGATTAATTGTTT 59.222 34.615 0.00 0.00 0.00 2.83
1640 1956 7.287696 ACAACTCTCTGGGTGATTAATTGTTTT 59.712 33.333 0.00 0.00 0.00 2.43
1641 1957 7.219484 ACTCTCTGGGTGATTAATTGTTTTG 57.781 36.000 0.00 0.00 0.00 2.44
1642 1958 6.024552 TCTCTGGGTGATTAATTGTTTTGC 57.975 37.500 0.00 0.00 0.00 3.68
1643 1959 5.774690 TCTCTGGGTGATTAATTGTTTTGCT 59.225 36.000 0.00 0.00 0.00 3.91
1644 1960 6.267471 TCTCTGGGTGATTAATTGTTTTGCTT 59.733 34.615 0.00 0.00 0.00 3.91
1645 1961 6.222389 TCTGGGTGATTAATTGTTTTGCTTG 58.778 36.000 0.00 0.00 0.00 4.01
1646 1962 4.754114 TGGGTGATTAATTGTTTTGCTTGC 59.246 37.500 0.00 0.00 0.00 4.01
1647 1963 4.996758 GGGTGATTAATTGTTTTGCTTGCT 59.003 37.500 0.00 0.00 0.00 3.91
1648 1964 5.120674 GGGTGATTAATTGTTTTGCTTGCTC 59.879 40.000 0.00 0.00 0.00 4.26
1649 1965 5.928264 GGTGATTAATTGTTTTGCTTGCTCT 59.072 36.000 0.00 0.00 0.00 4.09
1650 1966 6.128742 GGTGATTAATTGTTTTGCTTGCTCTG 60.129 38.462 0.00 0.00 0.00 3.35
1651 1967 6.421801 GTGATTAATTGTTTTGCTTGCTCTGT 59.578 34.615 0.00 0.00 0.00 3.41
1652 1968 6.985645 TGATTAATTGTTTTGCTTGCTCTGTT 59.014 30.769 0.00 0.00 0.00 3.16
1653 1969 7.495279 TGATTAATTGTTTTGCTTGCTCTGTTT 59.505 29.630 0.00 0.00 0.00 2.83
1654 1970 7.608308 TTAATTGTTTTGCTTGCTCTGTTTT 57.392 28.000 0.00 0.00 0.00 2.43
1655 1971 5.723492 ATTGTTTTGCTTGCTCTGTTTTC 57.277 34.783 0.00 0.00 0.00 2.29
1656 1972 4.185467 TGTTTTGCTTGCTCTGTTTTCA 57.815 36.364 0.00 0.00 0.00 2.69
1663 1979 4.098349 TGCTTGCTCTGTTTTCAGTTGAAT 59.902 37.500 0.00 0.00 46.98 2.57
1903 2230 3.973516 CGCCGCCGCCATCTACTA 61.974 66.667 0.00 0.00 0.00 1.82
1993 2370 2.041922 CTCCCTCCCACCCGATCA 60.042 66.667 0.00 0.00 0.00 2.92
2198 2637 3.975312 TCCACCTACTACACCTGGAAAAA 59.025 43.478 0.00 0.00 0.00 1.94
2212 2651 4.041691 CCTGGAAAAACTACTTCTCCCTCA 59.958 45.833 0.00 0.00 0.00 3.86
2213 2652 5.228945 TGGAAAAACTACTTCTCCCTCAG 57.771 43.478 0.00 0.00 0.00 3.35
2242 2681 2.688446 GAGTACCACCTCATCGATCACA 59.312 50.000 0.00 0.00 0.00 3.58
2307 2750 1.815421 GCTGACCATCGACGCCATT 60.815 57.895 0.00 0.00 0.00 3.16
2349 2792 5.188434 CAAAGCATCTCCAAGGACATCTTA 58.812 41.667 0.00 0.00 33.68 2.10
2568 3014 1.378778 CTCCGACGACCTCCTCCTT 60.379 63.158 0.00 0.00 0.00 3.36
2620 3066 2.594592 GCAACGTGGCCTCCAACT 60.595 61.111 2.56 0.00 34.18 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 4.605967 GTGTTGTGGTGTGCGCGG 62.606 66.667 8.83 0.00 0.00 6.46
16 17 4.605967 GGTGTTGTGGTGTGCGCG 62.606 66.667 0.00 0.00 0.00 6.86
17 18 4.605967 CGGTGTTGTGGTGTGCGC 62.606 66.667 0.00 0.00 0.00 6.09
18 19 3.163110 GACGGTGTTGTGGTGTGCG 62.163 63.158 0.00 0.00 0.00 5.34
19 20 2.713154 GACGGTGTTGTGGTGTGC 59.287 61.111 0.00 0.00 0.00 4.57
20 21 2.184167 GGGACGGTGTTGTGGTGTG 61.184 63.158 0.00 0.00 0.00 3.82
21 22 2.191109 GGGACGGTGTTGTGGTGT 59.809 61.111 0.00 0.00 0.00 4.16
22 23 1.891919 CAGGGACGGTGTTGTGGTG 60.892 63.158 0.00 0.00 0.00 4.17
23 24 2.508928 CAGGGACGGTGTTGTGGT 59.491 61.111 0.00 0.00 0.00 4.16
24 25 2.978010 GCAGGGACGGTGTTGTGG 60.978 66.667 0.00 0.00 0.00 4.17
25 26 3.345808 CGCAGGGACGGTGTTGTG 61.346 66.667 0.00 0.00 0.00 3.33
44 45 2.202797 ATGCGTGCACTAGCGAGG 60.203 61.111 16.19 0.00 46.23 4.63
45 46 2.233654 GGATGCGTGCACTAGCGAG 61.234 63.158 16.19 0.00 46.23 5.03
46 47 2.202743 GGATGCGTGCACTAGCGA 60.203 61.111 16.19 3.59 46.23 4.93
47 48 3.264897 GGGATGCGTGCACTAGCG 61.265 66.667 16.19 2.18 46.23 4.26
48 49 2.176273 CAGGGATGCGTGCACTAGC 61.176 63.158 16.19 12.54 42.57 3.42
49 50 2.176273 GCAGGGATGCGTGCACTAG 61.176 63.158 24.49 0.69 39.62 2.57
50 51 2.125147 GCAGGGATGCGTGCACTA 60.125 61.111 24.49 4.03 39.62 2.74
55 56 4.415150 AGGTGGCAGGGATGCGTG 62.415 66.667 2.14 2.14 35.24 5.34
56 57 4.101448 GAGGTGGCAGGGATGCGT 62.101 66.667 0.00 0.00 35.24 5.24
59 60 4.864334 GGCGAGGTGGCAGGGATG 62.864 72.222 0.00 0.00 44.08 3.51
66 67 4.767255 CAGGAGTGGCGAGGTGGC 62.767 72.222 0.00 0.00 45.12 5.01
67 68 3.314331 ACAGGAGTGGCGAGGTGG 61.314 66.667 0.00 0.00 0.00 4.61
68 69 2.047844 CACAGGAGTGGCGAGGTG 60.048 66.667 0.00 0.00 42.13 4.00
69 70 2.203640 TCACAGGAGTGGCGAGGT 60.204 61.111 0.00 0.00 45.91 3.85
70 71 2.262915 GTCACAGGAGTGGCGAGG 59.737 66.667 0.00 0.00 45.91 4.63
75 76 4.742201 CGCGGGTCACAGGAGTGG 62.742 72.222 0.00 0.00 45.91 4.00
99 100 3.719883 CTGAGGCTCTCTGCTGGCG 62.720 68.421 16.72 0.00 42.39 5.69
100 101 2.187424 CTGAGGCTCTCTGCTGGC 59.813 66.667 16.72 0.00 42.39 4.85
101 102 2.187424 GCTGAGGCTCTCTGCTGG 59.813 66.667 16.72 0.00 46.81 4.85
105 106 1.752310 TCTCGGCTGAGGCTCTCTG 60.752 63.158 22.38 12.24 42.79 3.35
106 107 1.752694 GTCTCGGCTGAGGCTCTCT 60.753 63.158 20.14 0.00 43.69 3.10
107 108 2.781158 GGTCTCGGCTGAGGCTCTC 61.781 68.421 25.68 6.62 46.33 3.20
108 109 2.757917 GGTCTCGGCTGAGGCTCT 60.758 66.667 25.68 0.00 46.33 4.09
109 110 2.650116 TTGGTCTCGGCTGAGGCTC 61.650 63.158 25.68 16.30 46.33 4.70
110 111 2.604686 TTGGTCTCGGCTGAGGCT 60.605 61.111 25.68 0.00 46.33 4.58
111 112 2.435059 GTTGGTCTCGGCTGAGGC 60.435 66.667 22.38 20.88 46.39 4.70
112 113 1.079543 CTGTTGGTCTCGGCTGAGG 60.080 63.158 22.38 4.25 42.79 3.86
113 114 1.739562 GCTGTTGGTCTCGGCTGAG 60.740 63.158 16.98 16.98 43.99 3.35
114 115 2.343758 GCTGTTGGTCTCGGCTGA 59.656 61.111 0.00 0.00 34.72 4.26
115 116 2.743928 GGCTGTTGGTCTCGGCTG 60.744 66.667 0.00 0.00 37.35 4.85
116 117 4.021925 GGGCTGTTGGTCTCGGCT 62.022 66.667 0.00 0.00 37.35 5.52
118 119 4.410400 GGGGGCTGTTGGTCTCGG 62.410 72.222 0.00 0.00 0.00 4.63
119 120 4.760047 CGGGGGCTGTTGGTCTCG 62.760 72.222 0.00 0.00 0.00 4.04
141 142 2.558554 TACCCTCGCTCGAGCTTTGC 62.559 60.000 32.88 9.76 40.69 3.68
142 143 0.108804 TTACCCTCGCTCGAGCTTTG 60.109 55.000 32.88 21.57 40.69 2.77
143 144 0.606604 TTTACCCTCGCTCGAGCTTT 59.393 50.000 32.88 15.46 40.69 3.51
144 145 0.108756 GTTTACCCTCGCTCGAGCTT 60.109 55.000 32.88 15.13 40.69 3.74
145 146 0.966370 AGTTTACCCTCGCTCGAGCT 60.966 55.000 32.88 17.78 40.69 4.09
146 147 0.802607 CAGTTTACCCTCGCTCGAGC 60.803 60.000 27.64 27.64 40.69 5.03
147 148 0.802607 GCAGTTTACCCTCGCTCGAG 60.803 60.000 8.45 8.45 41.63 4.04
148 149 1.214589 GCAGTTTACCCTCGCTCGA 59.785 57.895 0.00 0.00 0.00 4.04
149 150 0.802607 GAGCAGTTTACCCTCGCTCG 60.803 60.000 0.00 0.00 39.67 5.03
150 151 0.460459 GGAGCAGTTTACCCTCGCTC 60.460 60.000 0.00 0.00 46.58 5.03
151 152 1.597461 GGAGCAGTTTACCCTCGCT 59.403 57.895 0.00 0.00 35.14 4.93
152 153 1.810030 CGGAGCAGTTTACCCTCGC 60.810 63.158 0.00 0.00 0.00 5.03
153 154 4.496670 CGGAGCAGTTTACCCTCG 57.503 61.111 0.00 0.00 0.00 4.63
171 172 4.456253 CTCGCGCAAAGCTGGCAG 62.456 66.667 10.94 10.94 45.59 4.85
177 178 3.464545 GCAAAGCTCGCGCAAAGC 61.465 61.111 20.84 20.84 43.95 3.51
178 179 2.802414 GGCAAAGCTCGCGCAAAG 60.802 61.111 8.75 5.15 39.10 2.77
179 180 4.341502 GGGCAAAGCTCGCGCAAA 62.342 61.111 17.12 0.00 41.60 3.68
226 227 3.854669 CTAGCAGAGCCCACCCCG 61.855 72.222 0.00 0.00 0.00 5.73
227 228 4.182433 GCTAGCAGAGCCCACCCC 62.182 72.222 10.63 0.00 46.41 4.95
245 246 4.347453 AGCCAAAAAGCAGCGCCG 62.347 61.111 2.29 0.00 34.23 6.46
246 247 2.431430 GAGCCAAAAAGCAGCGCC 60.431 61.111 2.29 0.00 34.23 6.53
247 248 2.431430 GGAGCCAAAAAGCAGCGC 60.431 61.111 0.00 0.00 34.23 5.92
248 249 2.259511 GGGAGCCAAAAAGCAGCG 59.740 61.111 0.00 0.00 34.23 5.18
249 250 2.259511 CGGGAGCCAAAAAGCAGC 59.740 61.111 0.00 0.00 34.23 5.25
250 251 2.639327 CCCGGGAGCCAAAAAGCAG 61.639 63.158 18.48 0.00 34.23 4.24
251 252 2.600173 CCCGGGAGCCAAAAAGCA 60.600 61.111 18.48 0.00 34.23 3.91
252 253 4.069232 GCCCGGGAGCCAAAAAGC 62.069 66.667 29.31 0.00 0.00 3.51
278 279 3.827898 CTCTCCCGTGTCGCCTCC 61.828 72.222 0.00 0.00 0.00 4.30
279 280 2.750637 TCTCTCCCGTGTCGCCTC 60.751 66.667 0.00 0.00 0.00 4.70
280 281 2.752238 CTCTCTCCCGTGTCGCCT 60.752 66.667 0.00 0.00 0.00 5.52
281 282 3.827898 CCTCTCTCCCGTGTCGCC 61.828 72.222 0.00 0.00 0.00 5.54
282 283 2.750637 TCCTCTCTCCCGTGTCGC 60.751 66.667 0.00 0.00 0.00 5.19
283 284 2.115911 CCTCCTCTCTCCCGTGTCG 61.116 68.421 0.00 0.00 0.00 4.35
284 285 0.750182 CTCCTCCTCTCTCCCGTGTC 60.750 65.000 0.00 0.00 0.00 3.67
285 286 1.304952 CTCCTCCTCTCTCCCGTGT 59.695 63.158 0.00 0.00 0.00 4.49
286 287 1.454847 CCTCCTCCTCTCTCCCGTG 60.455 68.421 0.00 0.00 0.00 4.94
287 288 2.695970 CCCTCCTCCTCTCTCCCGT 61.696 68.421 0.00 0.00 0.00 5.28
288 289 2.197324 CCCTCCTCCTCTCTCCCG 59.803 72.222 0.00 0.00 0.00 5.14
289 290 2.015726 TCCCCTCCTCCTCTCTCCC 61.016 68.421 0.00 0.00 0.00 4.30
290 291 1.541672 CTCCCCTCCTCCTCTCTCC 59.458 68.421 0.00 0.00 0.00 3.71
291 292 1.152546 GCTCCCCTCCTCCTCTCTC 60.153 68.421 0.00 0.00 0.00 3.20
292 293 1.625565 AGCTCCCCTCCTCCTCTCT 60.626 63.158 0.00 0.00 0.00 3.10
293 294 1.152546 GAGCTCCCCTCCTCCTCTC 60.153 68.421 0.87 0.00 34.35 3.20
294 295 1.625565 AGAGCTCCCCTCCTCCTCT 60.626 63.158 10.93 0.00 41.74 3.69
295 296 1.152546 GAGAGCTCCCCTCCTCCTC 60.153 68.421 10.93 0.00 41.74 3.71
296 297 1.303423 ATGAGAGCTCCCCTCCTCCT 61.303 60.000 10.93 0.00 41.74 3.69
297 298 1.120795 CATGAGAGCTCCCCTCCTCC 61.121 65.000 10.93 0.00 41.74 4.30
298 299 1.757423 GCATGAGAGCTCCCCTCCTC 61.757 65.000 10.93 0.21 41.74 3.71
299 300 1.765657 GCATGAGAGCTCCCCTCCT 60.766 63.158 10.93 0.00 41.74 3.69
300 301 0.470833 TAGCATGAGAGCTCCCCTCC 60.471 60.000 10.93 0.00 45.26 4.30
301 302 0.968405 CTAGCATGAGAGCTCCCCTC 59.032 60.000 10.93 1.86 45.26 4.30
302 303 0.264359 ACTAGCATGAGAGCTCCCCT 59.736 55.000 10.93 2.40 45.26 4.79
303 304 0.392336 CACTAGCATGAGAGCTCCCC 59.608 60.000 10.93 3.19 45.26 4.81
304 305 1.118838 ACACTAGCATGAGAGCTCCC 58.881 55.000 10.93 0.00 45.26 4.30
305 306 1.753649 TCACACTAGCATGAGAGCTCC 59.246 52.381 10.93 2.40 45.26 4.70
306 307 3.318839 AGATCACACTAGCATGAGAGCTC 59.681 47.826 5.27 5.27 45.26 4.09
308 309 3.731652 AGATCACACTAGCATGAGAGC 57.268 47.619 0.00 0.00 0.00 4.09
309 310 5.259832 TGAAGATCACACTAGCATGAGAG 57.740 43.478 0.00 0.00 0.00 3.20
310 311 5.866159 ATGAAGATCACACTAGCATGAGA 57.134 39.130 0.00 0.00 0.00 3.27
311 312 6.282167 AGAATGAAGATCACACTAGCATGAG 58.718 40.000 0.00 0.00 0.00 2.90
312 313 6.231258 AGAATGAAGATCACACTAGCATGA 57.769 37.500 0.00 0.00 0.00 3.07
313 314 7.171167 CCTTAGAATGAAGATCACACTAGCATG 59.829 40.741 0.00 0.00 0.00 4.06
314 315 7.147585 ACCTTAGAATGAAGATCACACTAGCAT 60.148 37.037 0.00 0.00 0.00 3.79
315 316 6.155221 ACCTTAGAATGAAGATCACACTAGCA 59.845 38.462 0.00 0.00 0.00 3.49
316 317 6.578023 ACCTTAGAATGAAGATCACACTAGC 58.422 40.000 0.00 0.00 0.00 3.42
317 318 9.092876 GAAACCTTAGAATGAAGATCACACTAG 57.907 37.037 0.00 0.00 0.00 2.57
318 319 8.816894 AGAAACCTTAGAATGAAGATCACACTA 58.183 33.333 0.00 0.00 0.00 2.74
319 320 7.684529 AGAAACCTTAGAATGAAGATCACACT 58.315 34.615 0.00 0.00 0.00 3.55
320 321 7.913674 AGAAACCTTAGAATGAAGATCACAC 57.086 36.000 0.00 0.00 0.00 3.82
321 322 9.436957 GTTAGAAACCTTAGAATGAAGATCACA 57.563 33.333 0.00 0.00 0.00 3.58
322 323 9.660180 AGTTAGAAACCTTAGAATGAAGATCAC 57.340 33.333 0.00 0.00 0.00 3.06
328 329 9.227777 GCCTAAAGTTAGAAACCTTAGAATGAA 57.772 33.333 8.91 0.00 37.52 2.57
329 330 8.603304 AGCCTAAAGTTAGAAACCTTAGAATGA 58.397 33.333 8.91 0.00 37.52 2.57
330 331 8.669243 CAGCCTAAAGTTAGAAACCTTAGAATG 58.331 37.037 8.91 4.87 37.52 2.67
331 332 7.337184 GCAGCCTAAAGTTAGAAACCTTAGAAT 59.663 37.037 8.91 0.00 37.52 2.40
332 333 6.653740 GCAGCCTAAAGTTAGAAACCTTAGAA 59.346 38.462 8.91 0.00 37.52 2.10
333 334 6.171213 GCAGCCTAAAGTTAGAAACCTTAGA 58.829 40.000 8.91 0.00 37.52 2.10
334 335 5.354513 GGCAGCCTAAAGTTAGAAACCTTAG 59.645 44.000 3.29 2.52 35.92 2.18
335 336 5.221966 TGGCAGCCTAAAGTTAGAAACCTTA 60.222 40.000 14.15 0.00 32.47 2.69
336 337 4.079970 GGCAGCCTAAAGTTAGAAACCTT 58.920 43.478 3.29 0.00 32.47 3.50
337 338 3.073946 TGGCAGCCTAAAGTTAGAAACCT 59.926 43.478 14.15 0.00 32.47 3.50
338 339 3.418047 TGGCAGCCTAAAGTTAGAAACC 58.582 45.455 14.15 0.00 32.47 3.27
339 340 4.072839 ACTGGCAGCCTAAAGTTAGAAAC 58.927 43.478 15.89 0.00 32.47 2.78
340 341 4.072131 CACTGGCAGCCTAAAGTTAGAAA 58.928 43.478 15.89 0.00 32.47 2.52
341 342 3.674997 CACTGGCAGCCTAAAGTTAGAA 58.325 45.455 15.89 0.00 32.47 2.10
342 343 2.615493 GCACTGGCAGCCTAAAGTTAGA 60.615 50.000 15.89 0.00 40.72 2.10
343 344 1.740025 GCACTGGCAGCCTAAAGTTAG 59.260 52.381 15.89 1.63 40.72 2.34
344 345 1.821216 GCACTGGCAGCCTAAAGTTA 58.179 50.000 15.89 0.00 40.72 2.24
345 346 1.237285 CGCACTGGCAGCCTAAAGTT 61.237 55.000 15.89 0.00 41.24 2.66
346 347 1.672356 CGCACTGGCAGCCTAAAGT 60.672 57.895 15.89 4.87 41.24 2.66
347 348 1.364626 CTCGCACTGGCAGCCTAAAG 61.365 60.000 15.89 4.12 41.24 1.85
348 349 1.375908 CTCGCACTGGCAGCCTAAA 60.376 57.895 15.89 0.00 41.24 1.85
349 350 1.617018 ATCTCGCACTGGCAGCCTAA 61.617 55.000 15.89 0.00 41.24 2.69
350 351 2.060383 ATCTCGCACTGGCAGCCTA 61.060 57.895 15.89 0.00 41.24 3.93
351 352 3.397439 ATCTCGCACTGGCAGCCT 61.397 61.111 15.89 0.00 41.24 4.58
352 353 3.200593 CATCTCGCACTGGCAGCC 61.201 66.667 15.89 3.66 41.24 4.85
353 354 2.435586 ACATCTCGCACTGGCAGC 60.436 61.111 15.89 0.62 41.24 5.25
354 355 0.457443 TAGACATCTCGCACTGGCAG 59.543 55.000 14.16 14.16 41.24 4.85
355 356 1.114627 ATAGACATCTCGCACTGGCA 58.885 50.000 0.00 0.00 41.24 4.92
356 357 2.352225 CCTATAGACATCTCGCACTGGC 60.352 54.545 0.00 0.00 0.00 4.85
357 358 2.230025 CCCTATAGACATCTCGCACTGG 59.770 54.545 0.00 0.00 0.00 4.00
358 359 2.352225 GCCCTATAGACATCTCGCACTG 60.352 54.545 0.00 0.00 0.00 3.66
359 360 1.889829 GCCCTATAGACATCTCGCACT 59.110 52.381 0.00 0.00 0.00 4.40
360 361 1.889829 AGCCCTATAGACATCTCGCAC 59.110 52.381 0.00 0.00 0.00 5.34
361 362 2.294449 AGCCCTATAGACATCTCGCA 57.706 50.000 0.00 0.00 0.00 5.10
362 363 4.677584 CAATAGCCCTATAGACATCTCGC 58.322 47.826 0.00 0.00 0.00 5.03
363 364 4.677584 GCAATAGCCCTATAGACATCTCG 58.322 47.826 0.00 0.00 33.58 4.04
391 392 3.369921 CCAAAGGCAACCTCCTGC 58.630 61.111 0.00 0.00 41.85 4.85
403 404 2.278330 GCCCCAACTCCTGCCAAAG 61.278 63.158 0.00 0.00 0.00 2.77
404 405 2.203625 GCCCCAACTCCTGCCAAA 60.204 61.111 0.00 0.00 0.00 3.28
405 406 4.299796 GGCCCCAACTCCTGCCAA 62.300 66.667 0.00 0.00 43.46 4.52
407 408 4.748144 CTGGCCCCAACTCCTGCC 62.748 72.222 0.00 0.00 44.27 4.85
408 409 1.926426 ATACTGGCCCCAACTCCTGC 61.926 60.000 0.00 0.00 0.00 4.85
409 410 1.507140 TATACTGGCCCCAACTCCTG 58.493 55.000 0.00 0.00 0.00 3.86
410 411 2.057922 CATATACTGGCCCCAACTCCT 58.942 52.381 0.00 0.00 0.00 3.69
411 412 1.073923 CCATATACTGGCCCCAACTCC 59.926 57.143 0.00 0.00 38.47 3.85
412 413 2.054799 TCCATATACTGGCCCCAACTC 58.945 52.381 0.00 0.00 45.52 3.01
413 414 2.206322 TCCATATACTGGCCCCAACT 57.794 50.000 0.00 0.00 45.52 3.16
414 415 3.306472 TTTCCATATACTGGCCCCAAC 57.694 47.619 0.00 0.00 45.52 3.77
415 416 4.338795 TTTTTCCATATACTGGCCCCAA 57.661 40.909 0.00 0.00 45.52 4.12
486 487 5.988287 TGGCTTTCTCTTTGGTTTTCATTT 58.012 33.333 0.00 0.00 0.00 2.32
489 490 5.175127 GTTTGGCTTTCTCTTTGGTTTTCA 58.825 37.500 0.00 0.00 0.00 2.69
496 497 4.493547 TGTTGTGTTTGGCTTTCTCTTTG 58.506 39.130 0.00 0.00 0.00 2.77
497 498 4.799564 TGTTGTGTTTGGCTTTCTCTTT 57.200 36.364 0.00 0.00 0.00 2.52
498 499 4.799564 TTGTTGTGTTTGGCTTTCTCTT 57.200 36.364 0.00 0.00 0.00 2.85
499 500 5.343307 AATTGTTGTGTTTGGCTTTCTCT 57.657 34.783 0.00 0.00 0.00 3.10
500 501 5.006649 GGAAATTGTTGTGTTTGGCTTTCTC 59.993 40.000 0.00 0.00 0.00 2.87
501 502 4.875536 GGAAATTGTTGTGTTTGGCTTTCT 59.124 37.500 0.00 0.00 0.00 2.52
534 535 7.472334 AGCATGATAAATTCACCTCAGTTTT 57.528 32.000 0.00 0.00 37.11 2.43
544 549 5.664294 AGTTGGCAAGCATGATAAATTCA 57.336 34.783 0.00 0.00 39.12 2.57
553 558 3.981211 ACAAGTTTAGTTGGCAAGCATG 58.019 40.909 0.00 0.00 0.00 4.06
561 566 6.391227 AATGAGGTTGACAAGTTTAGTTGG 57.609 37.500 2.66 0.00 0.00 3.77
577 582 7.850193 ACATGGCAAATTATGTTTAATGAGGT 58.150 30.769 0.00 0.00 34.00 3.85
578 583 8.721019 AACATGGCAAATTATGTTTAATGAGG 57.279 30.769 0.00 0.00 43.00 3.86
645 650 3.026694 TGAGCTAGCTGTGCATCTAAGA 58.973 45.455 24.99 0.00 0.00 2.10
646 651 3.449528 TGAGCTAGCTGTGCATCTAAG 57.550 47.619 24.99 0.00 0.00 2.18
647 652 3.448660 TCTTGAGCTAGCTGTGCATCTAA 59.551 43.478 24.99 0.00 0.00 2.10
648 653 3.026694 TCTTGAGCTAGCTGTGCATCTA 58.973 45.455 24.99 2.55 0.00 1.98
649 654 1.829849 TCTTGAGCTAGCTGTGCATCT 59.170 47.619 24.99 0.00 0.00 2.90
650 655 2.159128 TCTCTTGAGCTAGCTGTGCATC 60.159 50.000 24.99 7.26 0.00 3.91
651 656 1.829849 TCTCTTGAGCTAGCTGTGCAT 59.170 47.619 24.99 0.00 0.00 3.96
652 657 1.260544 TCTCTTGAGCTAGCTGTGCA 58.739 50.000 24.99 11.60 0.00 4.57
733 766 8.184304 ACCTATCATCGAAGCTACTCTAATTT 57.816 34.615 0.00 0.00 0.00 1.82
735 768 8.865420 TTACCTATCATCGAAGCTACTCTAAT 57.135 34.615 0.00 0.00 0.00 1.73
737 770 6.879993 CCTTACCTATCATCGAAGCTACTCTA 59.120 42.308 0.00 0.00 0.00 2.43
738 771 5.708230 CCTTACCTATCATCGAAGCTACTCT 59.292 44.000 0.00 0.00 0.00 3.24
739 772 5.706369 TCCTTACCTATCATCGAAGCTACTC 59.294 44.000 0.00 0.00 0.00 2.59
740 773 5.632118 TCCTTACCTATCATCGAAGCTACT 58.368 41.667 0.00 0.00 0.00 2.57
741 774 5.961396 TCCTTACCTATCATCGAAGCTAC 57.039 43.478 0.00 0.00 0.00 3.58
742 775 5.105716 GCATCCTTACCTATCATCGAAGCTA 60.106 44.000 0.00 0.00 0.00 3.32
743 776 4.322349 GCATCCTTACCTATCATCGAAGCT 60.322 45.833 0.00 0.00 0.00 3.74
748 784 5.661056 TTAGGCATCCTTACCTATCATCG 57.339 43.478 0.00 0.00 38.33 3.84
809 858 4.686554 GTGAGGCGATGGACATATAGAAAC 59.313 45.833 0.00 0.00 0.00 2.78
810 859 4.262463 GGTGAGGCGATGGACATATAGAAA 60.262 45.833 0.00 0.00 0.00 2.52
811 860 3.258372 GGTGAGGCGATGGACATATAGAA 59.742 47.826 0.00 0.00 0.00 2.10
813 862 2.562738 TGGTGAGGCGATGGACATATAG 59.437 50.000 0.00 0.00 0.00 1.31
814 863 2.299013 GTGGTGAGGCGATGGACATATA 59.701 50.000 0.00 0.00 0.00 0.86
815 864 1.070758 GTGGTGAGGCGATGGACATAT 59.929 52.381 0.00 0.00 0.00 1.78
816 865 0.464036 GTGGTGAGGCGATGGACATA 59.536 55.000 0.00 0.00 0.00 2.29
851 916 9.904198 TGTGTAGAGATGATGAATTTTGGATTA 57.096 29.630 0.00 0.00 0.00 1.75
852 917 8.680903 GTGTGTAGAGATGATGAATTTTGGATT 58.319 33.333 0.00 0.00 0.00 3.01
853 918 7.284034 GGTGTGTAGAGATGATGAATTTTGGAT 59.716 37.037 0.00 0.00 0.00 3.41
854 919 6.599244 GGTGTGTAGAGATGATGAATTTTGGA 59.401 38.462 0.00 0.00 0.00 3.53
855 920 6.375174 TGGTGTGTAGAGATGATGAATTTTGG 59.625 38.462 0.00 0.00 0.00 3.28
856 921 7.094677 TGTGGTGTGTAGAGATGATGAATTTTG 60.095 37.037 0.00 0.00 0.00 2.44
857 922 6.942005 TGTGGTGTGTAGAGATGATGAATTTT 59.058 34.615 0.00 0.00 0.00 1.82
858 923 6.475504 TGTGGTGTGTAGAGATGATGAATTT 58.524 36.000 0.00 0.00 0.00 1.82
926 1225 3.018423 AGCTGGTGATTGATTTACCCC 57.982 47.619 0.00 0.00 33.51 4.95
928 1227 4.455606 AGCTAGCTGGTGATTGATTTACC 58.544 43.478 18.57 0.00 35.05 2.85
929 1228 6.516718 TCTAGCTAGCTGGTGATTGATTTAC 58.483 40.000 27.68 0.00 0.00 2.01
1078 1384 1.040646 TAGGTGATGGAGGCGATGAC 58.959 55.000 0.00 0.00 0.00 3.06
1147 1453 1.949847 CTCTTGGGGTCGTCGAGCAT 61.950 60.000 24.40 0.00 0.00 3.79
1458 1770 3.312504 CGCGACGACATGGCTACG 61.313 66.667 0.00 9.36 0.00 3.51
1479 1791 0.391263 CCCAGAAGTAGTTCCCGCAC 60.391 60.000 6.68 0.00 32.48 5.34
1521 1833 1.092348 TCGATCGACGGTGACTGAAT 58.908 50.000 15.15 0.00 42.82 2.57
1532 1844 2.997303 TCTAGCTCTAGCATCGATCGAC 59.003 50.000 22.06 8.95 45.16 4.20
1566 1882 7.885922 TGCTGTATCCCAGAAGTACAAAATAAA 59.114 33.333 0.00 0.00 44.49 1.40
1579 1895 6.040955 CAGAAATACTACTGCTGTATCCCAGA 59.959 42.308 3.72 0.00 44.49 3.86
1580 1896 6.040955 TCAGAAATACTACTGCTGTATCCCAG 59.959 42.308 3.72 0.00 44.53 4.45
1581 1897 5.897250 TCAGAAATACTACTGCTGTATCCCA 59.103 40.000 3.72 0.00 34.57 4.37
1582 1898 6.406692 TCAGAAATACTACTGCTGTATCCC 57.593 41.667 3.72 0.00 34.57 3.85
1583 1899 8.894768 ATTTCAGAAATACTACTGCTGTATCC 57.105 34.615 6.60 0.00 34.57 2.59
1600 1916 8.696374 CCCAGAGAGTTGTATAGTATTTCAGAA 58.304 37.037 0.00 0.00 0.00 3.02
1601 1917 7.839705 ACCCAGAGAGTTGTATAGTATTTCAGA 59.160 37.037 0.00 0.00 0.00 3.27
1602 1918 7.923344 CACCCAGAGAGTTGTATAGTATTTCAG 59.077 40.741 0.00 0.00 0.00 3.02
1603 1919 7.618117 TCACCCAGAGAGTTGTATAGTATTTCA 59.382 37.037 0.00 0.00 0.00 2.69
1604 1920 8.008513 TCACCCAGAGAGTTGTATAGTATTTC 57.991 38.462 0.00 0.00 0.00 2.17
1605 1921 7.973048 TCACCCAGAGAGTTGTATAGTATTT 57.027 36.000 0.00 0.00 0.00 1.40
1606 1922 8.554490 AATCACCCAGAGAGTTGTATAGTATT 57.446 34.615 0.00 0.00 0.00 1.89
1607 1923 9.656323 TTAATCACCCAGAGAGTTGTATAGTAT 57.344 33.333 0.00 0.00 0.00 2.12
1608 1924 9.656323 ATTAATCACCCAGAGAGTTGTATAGTA 57.344 33.333 0.00 0.00 0.00 1.82
1609 1925 7.973048 TTAATCACCCAGAGAGTTGTATAGT 57.027 36.000 0.00 0.00 0.00 2.12
1610 1926 9.265901 CAATTAATCACCCAGAGAGTTGTATAG 57.734 37.037 0.00 0.00 0.00 1.31
1611 1927 8.768397 ACAATTAATCACCCAGAGAGTTGTATA 58.232 33.333 0.00 0.00 29.72 1.47
1612 1928 7.633789 ACAATTAATCACCCAGAGAGTTGTAT 58.366 34.615 0.00 0.00 29.72 2.29
1613 1929 7.016153 ACAATTAATCACCCAGAGAGTTGTA 57.984 36.000 0.00 0.00 29.72 2.41
1614 1930 5.880901 ACAATTAATCACCCAGAGAGTTGT 58.119 37.500 0.00 0.00 0.00 3.32
1615 1931 6.824305 AACAATTAATCACCCAGAGAGTTG 57.176 37.500 0.00 0.00 0.00 3.16
1616 1932 7.661040 CAAAACAATTAATCACCCAGAGAGTT 58.339 34.615 0.00 0.00 0.00 3.01
1617 1933 6.294731 GCAAAACAATTAATCACCCAGAGAGT 60.295 38.462 0.00 0.00 0.00 3.24
1618 1934 6.071728 AGCAAAACAATTAATCACCCAGAGAG 60.072 38.462 0.00 0.00 0.00 3.20
1619 1935 5.774690 AGCAAAACAATTAATCACCCAGAGA 59.225 36.000 0.00 0.00 0.00 3.10
1620 1936 6.029346 AGCAAAACAATTAATCACCCAGAG 57.971 37.500 0.00 0.00 0.00 3.35
1621 1937 6.222389 CAAGCAAAACAATTAATCACCCAGA 58.778 36.000 0.00 0.00 0.00 3.86
1622 1938 5.106987 GCAAGCAAAACAATTAATCACCCAG 60.107 40.000 0.00 0.00 0.00 4.45
1623 1939 4.754114 GCAAGCAAAACAATTAATCACCCA 59.246 37.500 0.00 0.00 0.00 4.51
1624 1940 4.996758 AGCAAGCAAAACAATTAATCACCC 59.003 37.500 0.00 0.00 0.00 4.61
1625 1941 5.928264 AGAGCAAGCAAAACAATTAATCACC 59.072 36.000 0.00 0.00 0.00 4.02
1626 1942 6.421801 ACAGAGCAAGCAAAACAATTAATCAC 59.578 34.615 0.00 0.00 0.00 3.06
1627 1943 6.514947 ACAGAGCAAGCAAAACAATTAATCA 58.485 32.000 0.00 0.00 0.00 2.57
1628 1944 7.412137 AACAGAGCAAGCAAAACAATTAATC 57.588 32.000 0.00 0.00 0.00 1.75
1629 1945 7.790823 AAACAGAGCAAGCAAAACAATTAAT 57.209 28.000 0.00 0.00 0.00 1.40
1630 1946 7.332926 TGAAAACAGAGCAAGCAAAACAATTAA 59.667 29.630 0.00 0.00 0.00 1.40
1631 1947 6.815641 TGAAAACAGAGCAAGCAAAACAATTA 59.184 30.769 0.00 0.00 0.00 1.40
1632 1948 5.642919 TGAAAACAGAGCAAGCAAAACAATT 59.357 32.000 0.00 0.00 0.00 2.32
1633 1949 5.177326 TGAAAACAGAGCAAGCAAAACAAT 58.823 33.333 0.00 0.00 0.00 2.71
1634 1950 4.564041 TGAAAACAGAGCAAGCAAAACAA 58.436 34.783 0.00 0.00 0.00 2.83
1635 1951 4.175516 CTGAAAACAGAGCAAGCAAAACA 58.824 39.130 0.00 0.00 0.00 2.83
1636 1952 4.176271 ACTGAAAACAGAGCAAGCAAAAC 58.824 39.130 0.00 0.00 0.00 2.43
1637 1953 4.454728 ACTGAAAACAGAGCAAGCAAAA 57.545 36.364 0.00 0.00 0.00 2.44
1638 1954 4.082300 TCAACTGAAAACAGAGCAAGCAAA 60.082 37.500 0.00 0.00 0.00 3.68
1639 1955 3.443329 TCAACTGAAAACAGAGCAAGCAA 59.557 39.130 0.00 0.00 0.00 3.91
1640 1956 3.016031 TCAACTGAAAACAGAGCAAGCA 58.984 40.909 0.00 0.00 0.00 3.91
1641 1957 3.698029 TCAACTGAAAACAGAGCAAGC 57.302 42.857 0.00 0.00 0.00 4.01
1744 2060 6.218019 GTGCACGTATATATGGGTACAAAGA 58.782 40.000 17.61 0.00 32.41 2.52
1746 2062 5.299148 GGTGCACGTATATATGGGTACAAA 58.701 41.667 22.16 0.00 33.58 2.83
1893 2219 2.735100 GCGGCGCTAGTAGATGGC 60.735 66.667 26.86 3.92 0.00 4.40
1894 2220 2.049063 GGCGGCGCTAGTAGATGG 60.049 66.667 32.30 0.00 0.00 3.51
1895 2221 2.429236 CGGCGGCGCTAGTAGATG 60.429 66.667 32.30 7.59 0.00 2.90
1948 2275 1.460497 GAGGGAGAGGGATGGGGAC 60.460 68.421 0.00 0.00 0.00 4.46
2074 2513 0.549169 TCGAAGGGATTGGAGGGGTT 60.549 55.000 0.00 0.00 0.00 4.11
2198 2637 2.462723 GGAAGCTGAGGGAGAAGTAGT 58.537 52.381 0.00 0.00 0.00 2.73
2307 2750 0.744874 GGTACAGCCAGCGAGTGATA 59.255 55.000 0.00 0.00 37.17 2.15
2330 2773 3.873952 GTGTAAGATGTCCTTGGAGATGC 59.126 47.826 3.93 0.00 36.34 3.91
2349 2792 4.447544 TCGCAAACGATGGTGTGT 57.552 50.000 0.00 0.00 45.12 3.72
2609 3055 0.534203 GAACGTGAAGTTGGAGGCCA 60.534 55.000 5.01 0.00 44.35 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.