Multiple sequence alignment - TraesCS2B01G023300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G023300 chr2B 100.000 3083 0 0 1 3083 10867044 10870126 0.000000e+00 5694.0
1 TraesCS2B01G023300 chr2D 90.111 1436 85 34 1061 2470 371040 369636 0.000000e+00 1812.0
2 TraesCS2B01G023300 chr2D 93.582 1044 26 13 1 1019 372178 371151 0.000000e+00 1519.0
3 TraesCS2B01G023300 chr2D 86.063 287 21 8 2538 2815 369453 369177 1.080000e-74 291.0
4 TraesCS2B01G023300 chr2A 88.598 1070 68 25 1347 2374 474226 473169 0.000000e+00 1251.0
5 TraesCS2B01G023300 chr2A 88.889 702 60 5 1 696 477446 476757 0.000000e+00 848.0
6 TraesCS2B01G023300 chr2A 94.771 153 4 3 1104 1256 474426 474278 5.140000e-58 235.0
7 TraesCS2B01G023300 chr2A 96.078 51 2 0 2765 2815 472712 472662 1.970000e-12 84.2
8 TraesCS2B01G023300 chr4D 95.918 49 2 0 3035 3083 424079359 424079311 2.550000e-11 80.5
9 TraesCS2B01G023300 chr4D 95.745 47 2 0 3037 3083 7763083 7763037 3.300000e-10 76.8
10 TraesCS2B01G023300 chr4D 95.745 47 2 0 3037 3083 424078107 424078153 3.300000e-10 76.8
11 TraesCS2B01G023300 chr7D 95.745 47 2 0 3037 3083 400299185 400299139 3.300000e-10 76.8
12 TraesCS2B01G023300 chr6D 95.745 47 2 0 3037 3083 12140815 12140861 3.300000e-10 76.8
13 TraesCS2B01G023300 chr3D 94.118 51 2 1 3033 3083 456100799 456100848 3.300000e-10 76.8
14 TraesCS2B01G023300 chr3B 95.745 47 2 0 3037 3083 522028073 522028027 3.300000e-10 76.8
15 TraesCS2B01G023300 chr3B 92.308 52 2 2 3032 3083 637605047 637604998 4.260000e-09 73.1
16 TraesCS2B01G023300 chr1D 93.750 48 3 0 3036 3083 236094124 236094171 4.260000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G023300 chr2B 10867044 10870126 3082 False 5694.000000 5694 100.000000 1 3083 1 chr2B.!!$F1 3082
1 TraesCS2B01G023300 chr2D 369177 372178 3001 True 1207.333333 1812 89.918667 1 2815 3 chr2D.!!$R1 2814
2 TraesCS2B01G023300 chr2A 472662 477446 4784 True 604.550000 1251 92.084000 1 2815 4 chr2A.!!$R1 2814

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
445 452 0.896019 CGGAGGAGGTAGATCGGCAT 60.896 60.0 0.00 0.0 0.00 4.4 F
1263 3274 0.187606 ACATCCATGCATCTGGCCAT 59.812 50.0 5.51 0.0 43.89 4.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1486 3542 0.238289 CCGTTGTGTTGCAGGATGTC 59.762 55.0 0.0 0.0 39.31 3.06 R
2854 5082 0.253327 ATGGCTTCGAGTTCCCTTCC 59.747 55.0 0.0 0.0 0.00 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 2.224867 GCCTGTATAATGCCCCACATCT 60.225 50.000 0.00 0.00 38.34 2.90
127 128 4.659111 TTGTAGACTGAAACTGGAACGA 57.341 40.909 0.00 0.00 0.00 3.85
157 158 4.783621 GCCGCACCATCTGCTCCA 62.784 66.667 0.00 0.00 44.64 3.86
171 172 1.451504 CTCCACAGGACAGTGCCAA 59.548 57.895 6.40 0.00 38.18 4.52
183 185 2.438021 ACAGTGCCAAGAGACAAACCTA 59.562 45.455 0.00 0.00 0.00 3.08
283 289 2.167662 CAAGGCGGGGAACACTTATTT 58.832 47.619 0.00 0.00 0.00 1.40
428 435 2.892425 GCCTTGATCTCGCCACGG 60.892 66.667 0.00 0.00 0.00 4.94
445 452 0.896019 CGGAGGAGGTAGATCGGCAT 60.896 60.000 0.00 0.00 0.00 4.40
545 553 2.696187 GGCACTCCCTTTACCAACAAAA 59.304 45.455 0.00 0.00 0.00 2.44
590 598 8.776376 AAATTGACCAGCCATTTATGTTTTAG 57.224 30.769 0.00 0.00 0.00 1.85
790 2684 2.494870 GGCAGTCTGGAATGAGCAAATT 59.505 45.455 1.14 0.00 0.00 1.82
804 2698 5.710613 GAGCAAATTAGTACAGCTCTGAC 57.289 43.478 3.60 0.00 46.06 3.51
805 2699 5.413309 AGCAAATTAGTACAGCTCTGACT 57.587 39.130 3.60 5.74 0.00 3.41
806 2700 6.531503 AGCAAATTAGTACAGCTCTGACTA 57.468 37.500 3.60 4.88 0.00 2.59
807 2701 6.568869 AGCAAATTAGTACAGCTCTGACTAG 58.431 40.000 3.60 0.00 30.72 2.57
855 2749 7.033530 TGGTAAGTGATTGAAACAAACGAAT 57.966 32.000 0.00 0.00 0.00 3.34
856 2750 7.484975 TGGTAAGTGATTGAAACAAACGAATT 58.515 30.769 0.00 0.00 0.00 2.17
857 2751 7.433719 TGGTAAGTGATTGAAACAAACGAATTG 59.566 33.333 0.00 0.00 44.95 2.32
944 2855 1.118965 TCGCCAACCTTCACTCTCCA 61.119 55.000 0.00 0.00 0.00 3.86
952 2863 2.099405 CCTTCACTCTCCACTCTCTCC 58.901 57.143 0.00 0.00 0.00 3.71
957 2868 2.000048 ACTCTCCACTCTCTCCCTCTT 59.000 52.381 0.00 0.00 0.00 2.85
961 2872 3.076785 TCTCCACTCTCTCCCTCTTTCTT 59.923 47.826 0.00 0.00 0.00 2.52
973 2884 5.094387 TCCCTCTTTCTTTCTCCATGTAGT 58.906 41.667 0.00 0.00 0.00 2.73
1019 2930 0.694771 ATGGCAGAGAAGGTGAGCAA 59.305 50.000 0.00 0.00 0.00 3.91
1020 2931 0.694771 TGGCAGAGAAGGTGAGCAAT 59.305 50.000 0.00 0.00 0.00 3.56
1023 2987 1.471684 GCAGAGAAGGTGAGCAATTGG 59.528 52.381 7.72 0.00 0.00 3.16
1028 2992 1.541588 GAAGGTGAGCAATTGGGTGTC 59.458 52.381 7.72 0.00 0.00 3.67
1030 2994 1.168714 GGTGAGCAATTGGGTGTCTC 58.831 55.000 7.72 5.40 0.00 3.36
1041 3016 1.768275 TGGGTGTCTCTGTGTTGTCAT 59.232 47.619 0.00 0.00 0.00 3.06
1044 3019 3.466836 GGTGTCTCTGTGTTGTCATTGA 58.533 45.455 0.00 0.00 0.00 2.57
1059 3034 8.773645 TGTTGTCATTGAGTTTATGTTCTACAG 58.226 33.333 0.00 0.00 0.00 2.74
1093 3104 3.674528 TTGTGTTGCATGTTATTGGGG 57.325 42.857 0.00 0.00 0.00 4.96
1099 3110 4.190772 GTTGCATGTTATTGGGGATTTGG 58.809 43.478 0.00 0.00 0.00 3.28
1121 3132 5.355630 TGGGATTTATATGTTTGTGGTGTCG 59.644 40.000 0.00 0.00 0.00 4.35
1122 3133 5.587043 GGGATTTATATGTTTGTGGTGTCGA 59.413 40.000 0.00 0.00 0.00 4.20
1123 3134 6.457799 GGGATTTATATGTTTGTGGTGTCGAC 60.458 42.308 9.11 9.11 0.00 4.20
1124 3135 5.518529 TTTATATGTTTGTGGTGTCGACG 57.481 39.130 11.62 0.00 0.00 5.12
1243 3254 3.499157 TGCGTACGCTGAAATTAACCTTT 59.501 39.130 36.99 0.00 42.51 3.11
1256 3267 8.196771 TGAAATTAACCTTTACATCCATGCATC 58.803 33.333 0.00 0.00 0.00 3.91
1257 3268 7.902920 AATTAACCTTTACATCCATGCATCT 57.097 32.000 0.00 0.00 0.00 2.90
1258 3269 6.698008 TTAACCTTTACATCCATGCATCTG 57.302 37.500 0.00 0.00 0.00 2.90
1259 3270 3.559069 ACCTTTACATCCATGCATCTGG 58.441 45.455 0.00 0.00 37.66 3.86
1261 3272 1.985473 TTACATCCATGCATCTGGCC 58.015 50.000 0.00 0.00 43.89 5.36
1262 3273 0.845337 TACATCCATGCATCTGGCCA 59.155 50.000 4.71 4.71 43.89 5.36
1263 3274 0.187606 ACATCCATGCATCTGGCCAT 59.812 50.000 5.51 0.00 43.89 4.40
1264 3275 0.888619 CATCCATGCATCTGGCCATC 59.111 55.000 5.51 0.00 43.89 3.51
1265 3276 0.778083 ATCCATGCATCTGGCCATCT 59.222 50.000 5.51 0.00 43.89 2.90
1268 3279 2.175284 TCCATGCATCTGGCCATCTTTA 59.825 45.455 5.51 0.00 43.89 1.85
1270 3281 3.192844 CCATGCATCTGGCCATCTTTATC 59.807 47.826 5.51 0.00 43.89 1.75
1320 3376 9.599866 AAATGGATCCGTATGTATGTATGTATG 57.400 33.333 6.97 0.00 0.00 2.39
1321 3377 7.712204 TGGATCCGTATGTATGTATGTATGT 57.288 36.000 7.39 0.00 0.00 2.29
1322 3378 8.810990 TGGATCCGTATGTATGTATGTATGTA 57.189 34.615 7.39 0.00 0.00 2.29
1323 3379 9.416284 TGGATCCGTATGTATGTATGTATGTAT 57.584 33.333 7.39 0.00 0.00 2.29
1324 3380 9.678941 GGATCCGTATGTATGTATGTATGTATG 57.321 37.037 0.00 0.00 0.00 2.39
1359 3415 6.203647 TGTATGTATGTATGTACGTGCAGAC 58.796 40.000 22.20 22.20 44.61 3.51
1360 3416 4.705337 TGTATGTATGTACGTGCAGACA 57.295 40.909 30.93 30.93 43.41 3.41
1449 3505 1.509644 CGCACAAGCTCTCCTGCAAA 61.510 55.000 0.00 0.00 39.10 3.68
1465 3521 1.067354 GCAAAATCAGGTGCAAGGGAG 60.067 52.381 0.00 0.00 40.58 4.30
1467 3523 0.613012 AAATCAGGTGCAAGGGAGGC 60.613 55.000 0.00 0.00 0.00 4.70
1483 3539 2.409870 GGCAAGGTGATCAAGGGCG 61.410 63.158 0.00 0.00 0.00 6.13
1486 3542 1.079127 AAGGTGATCAAGGGCGTCG 60.079 57.895 0.00 0.00 0.00 5.12
1511 3567 4.622456 GCAACACAACGGCGGTGG 62.622 66.667 30.22 19.82 40.54 4.61
1559 3615 4.664688 AGAACAATCACAAGGGGAAGAT 57.335 40.909 0.00 0.00 0.00 2.40
1560 3616 5.779241 AGAACAATCACAAGGGGAAGATA 57.221 39.130 0.00 0.00 0.00 1.98
1569 3625 1.132500 AGGGGAAGATAAAGGAGCCG 58.868 55.000 0.00 0.00 0.00 5.52
1574 3630 3.338676 GATAAAGGAGCCGCCGCG 61.339 66.667 5.59 5.59 43.43 6.46
1600 3656 1.379916 CCAGTTCATGAGCCACCCA 59.620 57.895 5.87 0.00 0.00 4.51
1693 3749 3.200887 ATGGAGGCGACGATCGAGC 62.201 63.158 24.34 24.31 43.74 5.03
1726 3782 0.741915 GGAGAACCCTGTCGAGCTAG 59.258 60.000 0.00 0.00 0.00 3.42
1746 3805 2.966309 GCTGCCGTTGGGTTCTTCG 61.966 63.158 0.00 0.00 34.97 3.79
1749 3808 1.161563 TGCCGTTGGGTTCTTCGTTC 61.162 55.000 0.00 0.00 34.97 3.95
1756 3815 3.785499 GTTCTTCGTTCCCGGCGC 61.785 66.667 0.00 0.00 33.95 6.53
1816 3875 3.289062 TCGACGTGAAGCCACCGA 61.289 61.111 0.00 0.00 40.12 4.69
2162 4240 7.553402 TGGTTGCTTAGAAAGTTTGTGTTACTA 59.447 33.333 0.00 0.00 0.00 1.82
2163 4241 8.565416 GGTTGCTTAGAAAGTTTGTGTTACTAT 58.435 33.333 0.00 0.00 0.00 2.12
2183 4261 7.672983 ACTATGTGTTGACTTCCAATAACTG 57.327 36.000 0.00 0.00 37.08 3.16
2184 4262 7.224297 ACTATGTGTTGACTTCCAATAACTGT 58.776 34.615 0.00 0.00 37.08 3.55
2253 4351 3.554934 TGATTACACTGGGATTCATGGC 58.445 45.455 0.00 0.00 0.00 4.40
2437 4535 8.764287 CATTGAAAGAACAAGGGAAATGTTAAC 58.236 33.333 0.00 0.00 40.90 2.01
2443 4541 7.974504 AGAACAAGGGAAATGTTAACTCTCTA 58.025 34.615 7.22 0.00 40.90 2.43
2471 4642 7.466746 AAATAGTGGTAAAACATGATGCACT 57.533 32.000 0.00 6.42 0.00 4.40
2479 4650 5.972107 AAAACATGATGCACTAAAGCTCT 57.028 34.783 0.00 0.00 34.99 4.09
2480 4651 4.959596 AACATGATGCACTAAAGCTCTG 57.040 40.909 0.00 0.00 34.99 3.35
2491 4662 2.938956 AAAGCTCTGCAAGTACAGGT 57.061 45.000 0.00 0.00 38.26 4.00
2507 4678 9.275398 CAAGTACAGGTTAACCAACATTAGTTA 57.725 33.333 26.26 1.55 35.85 2.24
2522 4693 7.676683 ACATTAGTTAGAAGATTAGGAGGCA 57.323 36.000 0.00 0.00 0.00 4.75
2536 4707 4.176120 AGGAGGCAGAATTGGATAAAGG 57.824 45.455 0.00 0.00 0.00 3.11
2619 4847 7.995289 TGACACTTTTCAAAACATACACATCT 58.005 30.769 0.00 0.00 0.00 2.90
2635 4863 6.331369 ACACATCTCCAACAATACCAAAAG 57.669 37.500 0.00 0.00 0.00 2.27
2645 4873 9.757227 TCCAACAATACCAAAAGTTATGAAAAG 57.243 29.630 0.00 0.00 0.00 2.27
2665 4893 6.736110 AAAGATGCAATGCTAATATTGGGT 57.264 33.333 6.82 0.00 38.25 4.51
2666 4894 7.838079 AAAGATGCAATGCTAATATTGGGTA 57.162 32.000 6.82 0.00 38.25 3.69
2667 4895 7.458409 AAGATGCAATGCTAATATTGGGTAG 57.542 36.000 6.82 0.00 38.25 3.18
2668 4896 5.948162 AGATGCAATGCTAATATTGGGTAGG 59.052 40.000 6.82 0.00 38.25 3.18
2682 4910 4.351874 TGGGTAGGCATATCTACAAAGC 57.648 45.455 4.49 0.00 40.88 3.51
2683 4911 3.973973 TGGGTAGGCATATCTACAAAGCT 59.026 43.478 4.49 0.00 40.88 3.74
2684 4912 4.040461 TGGGTAGGCATATCTACAAAGCTC 59.960 45.833 0.00 0.00 40.88 4.09
2685 4913 4.238514 GGTAGGCATATCTACAAAGCTCG 58.761 47.826 0.00 0.00 40.88 5.03
2688 4916 2.726760 GGCATATCTACAAAGCTCGTCG 59.273 50.000 0.00 0.00 0.00 5.12
2711 4939 3.612955 GCTTAAATAACACGGCCTTTGCA 60.613 43.478 0.00 0.00 40.13 4.08
2775 5003 3.646611 TCCTTGCACATTGTGATGTTG 57.353 42.857 20.77 4.50 43.92 3.33
2815 5043 7.234782 TCCTTCTAGTGAAAGGAAGATGTGTTA 59.765 37.037 8.57 0.00 38.82 2.41
2816 5044 8.043710 CCTTCTAGTGAAAGGAAGATGTGTTAT 58.956 37.037 3.11 0.00 38.82 1.89
2817 5045 9.092876 CTTCTAGTGAAAGGAAGATGTGTTATC 57.907 37.037 0.00 0.00 38.82 1.75
2818 5046 8.134202 TCTAGTGAAAGGAAGATGTGTTATCA 57.866 34.615 0.00 0.00 0.00 2.15
2819 5047 8.035394 TCTAGTGAAAGGAAGATGTGTTATCAC 58.965 37.037 0.00 0.00 44.08 3.06
2820 5048 5.940470 AGTGAAAGGAAGATGTGTTATCACC 59.060 40.000 1.53 0.00 43.26 4.02
2821 5049 5.705441 GTGAAAGGAAGATGTGTTATCACCA 59.295 40.000 1.53 0.00 43.26 4.17
2822 5050 6.206634 GTGAAAGGAAGATGTGTTATCACCAA 59.793 38.462 1.53 0.00 43.26 3.67
2823 5051 6.947733 TGAAAGGAAGATGTGTTATCACCAAT 59.052 34.615 1.53 0.00 43.26 3.16
2824 5052 8.106462 TGAAAGGAAGATGTGTTATCACCAATA 58.894 33.333 1.53 0.00 43.26 1.90
2825 5053 7.865706 AAGGAAGATGTGTTATCACCAATAC 57.134 36.000 1.53 0.00 43.26 1.89
2826 5054 7.200434 AGGAAGATGTGTTATCACCAATACT 57.800 36.000 1.53 0.00 43.26 2.12
2827 5055 7.275920 AGGAAGATGTGTTATCACCAATACTC 58.724 38.462 1.53 0.00 43.26 2.59
2828 5056 6.201044 GGAAGATGTGTTATCACCAATACTCG 59.799 42.308 1.53 0.00 43.26 4.18
2829 5057 6.465439 AGATGTGTTATCACCAATACTCGA 57.535 37.500 1.53 0.00 43.26 4.04
2830 5058 6.873997 AGATGTGTTATCACCAATACTCGAA 58.126 36.000 1.53 0.00 43.26 3.71
2831 5059 6.980978 AGATGTGTTATCACCAATACTCGAAG 59.019 38.462 1.53 0.00 43.26 3.79
2832 5060 5.416083 TGTGTTATCACCAATACTCGAAGG 58.584 41.667 1.53 0.00 43.26 3.46
2833 5061 5.186215 TGTGTTATCACCAATACTCGAAGGA 59.814 40.000 1.53 0.00 43.26 3.36
2834 5062 6.127168 TGTGTTATCACCAATACTCGAAGGAT 60.127 38.462 1.53 0.00 43.26 3.24
2835 5063 6.421202 GTGTTATCACCAATACTCGAAGGATC 59.579 42.308 0.00 0.00 38.51 3.36
2836 5064 4.608948 ATCACCAATACTCGAAGGATCC 57.391 45.455 2.48 2.48 0.00 3.36
2837 5065 3.371034 TCACCAATACTCGAAGGATCCA 58.629 45.455 15.82 0.00 0.00 3.41
2838 5066 3.384789 TCACCAATACTCGAAGGATCCAG 59.615 47.826 15.82 4.76 0.00 3.86
2839 5067 3.384789 CACCAATACTCGAAGGATCCAGA 59.615 47.826 15.82 9.36 0.00 3.86
2840 5068 4.030913 ACCAATACTCGAAGGATCCAGAA 58.969 43.478 15.82 0.00 0.00 3.02
2841 5069 4.656112 ACCAATACTCGAAGGATCCAGAAT 59.344 41.667 15.82 2.77 0.00 2.40
2842 5070 5.131142 ACCAATACTCGAAGGATCCAGAATT 59.869 40.000 15.82 0.00 0.00 2.17
2843 5071 5.698545 CCAATACTCGAAGGATCCAGAATTC 59.301 44.000 15.82 7.95 0.00 2.17
2844 5072 3.828875 ACTCGAAGGATCCAGAATTCC 57.171 47.619 15.82 0.00 0.00 3.01
2845 5073 3.107601 ACTCGAAGGATCCAGAATTCCA 58.892 45.455 15.82 0.00 34.27 3.53
2846 5074 3.713764 ACTCGAAGGATCCAGAATTCCAT 59.286 43.478 15.82 0.00 34.27 3.41
2847 5075 4.202305 ACTCGAAGGATCCAGAATTCCATC 60.202 45.833 15.82 1.71 34.27 3.51
2848 5076 3.071602 TCGAAGGATCCAGAATTCCATCC 59.928 47.826 15.82 16.12 35.87 3.51
2849 5077 3.760738 GAAGGATCCAGAATTCCATCCC 58.239 50.000 15.82 8.50 36.22 3.85
2850 5078 3.086493 AGGATCCAGAATTCCATCCCT 57.914 47.619 15.82 10.19 36.22 4.20
2851 5079 2.985311 AGGATCCAGAATTCCATCCCTC 59.015 50.000 15.82 4.28 36.22 4.30
2852 5080 2.985311 GGATCCAGAATTCCATCCCTCT 59.015 50.000 6.95 0.00 30.17 3.69
2853 5081 4.140350 AGGATCCAGAATTCCATCCCTCTA 60.140 45.833 15.82 0.00 36.22 2.43
2854 5082 4.224818 GGATCCAGAATTCCATCCCTCTAG 59.775 50.000 6.95 0.00 30.17 2.43
2855 5083 3.591789 TCCAGAATTCCATCCCTCTAGG 58.408 50.000 0.65 0.00 0.00 3.02
2867 5095 2.438800 CCTCTAGGAAGGGAACTCGA 57.561 55.000 0.00 0.00 42.68 4.04
2868 5096 2.736347 CCTCTAGGAAGGGAACTCGAA 58.264 52.381 0.00 0.00 42.68 3.71
2869 5097 2.691011 CCTCTAGGAAGGGAACTCGAAG 59.309 54.545 0.00 0.00 42.68 3.79
2870 5098 2.100087 CTCTAGGAAGGGAACTCGAAGC 59.900 54.545 0.00 0.00 42.68 3.86
2871 5099 1.137282 CTAGGAAGGGAACTCGAAGCC 59.863 57.143 0.00 0.00 42.68 4.35
2872 5100 0.836400 AGGAAGGGAACTCGAAGCCA 60.836 55.000 0.00 0.00 42.68 4.75
2873 5101 0.253327 GGAAGGGAACTCGAAGCCAT 59.747 55.000 0.00 0.00 42.68 4.40
2874 5102 1.657822 GAAGGGAACTCGAAGCCATC 58.342 55.000 0.00 0.00 42.68 3.51
2884 5112 1.358877 CGAAGCCATCGTCATCAACA 58.641 50.000 1.56 0.00 46.52 3.33
2885 5113 1.731709 CGAAGCCATCGTCATCAACAA 59.268 47.619 1.56 0.00 46.52 2.83
2886 5114 2.352651 CGAAGCCATCGTCATCAACAAT 59.647 45.455 1.56 0.00 46.52 2.71
2887 5115 3.555547 CGAAGCCATCGTCATCAACAATA 59.444 43.478 1.56 0.00 46.52 1.90
2888 5116 4.550831 CGAAGCCATCGTCATCAACAATAC 60.551 45.833 1.56 0.00 46.52 1.89
2889 5117 4.142609 AGCCATCGTCATCAACAATACT 57.857 40.909 0.00 0.00 0.00 2.12
2890 5118 4.122776 AGCCATCGTCATCAACAATACTC 58.877 43.478 0.00 0.00 0.00 2.59
2891 5119 4.122776 GCCATCGTCATCAACAATACTCT 58.877 43.478 0.00 0.00 0.00 3.24
2892 5120 4.025396 GCCATCGTCATCAACAATACTCTG 60.025 45.833 0.00 0.00 0.00 3.35
2893 5121 5.111989 CCATCGTCATCAACAATACTCTGT 58.888 41.667 0.00 0.00 0.00 3.41
2894 5122 5.582269 CCATCGTCATCAACAATACTCTGTT 59.418 40.000 0.00 0.00 40.17 3.16
2895 5123 6.756542 CCATCGTCATCAACAATACTCTGTTA 59.243 38.462 0.00 0.00 37.43 2.41
2896 5124 7.277760 CCATCGTCATCAACAATACTCTGTTAA 59.722 37.037 0.00 0.00 37.43 2.01
2897 5125 8.820933 CATCGTCATCAACAATACTCTGTTAAT 58.179 33.333 0.00 0.00 37.43 1.40
2898 5126 8.407457 TCGTCATCAACAATACTCTGTTAATC 57.593 34.615 0.00 0.00 37.43 1.75
2899 5127 8.032451 TCGTCATCAACAATACTCTGTTAATCA 58.968 33.333 0.00 0.00 37.43 2.57
2900 5128 8.820933 CGTCATCAACAATACTCTGTTAATCAT 58.179 33.333 0.00 0.00 37.43 2.45
2903 5131 9.726232 CATCAACAATACTCTGTTAATCATTGG 57.274 33.333 0.00 0.00 37.43 3.16
2904 5132 8.279970 TCAACAATACTCTGTTAATCATTGGG 57.720 34.615 0.00 0.00 37.43 4.12
2905 5133 8.106462 TCAACAATACTCTGTTAATCATTGGGA 58.894 33.333 0.00 0.00 37.43 4.37
2906 5134 8.906867 CAACAATACTCTGTTAATCATTGGGAT 58.093 33.333 0.00 0.00 37.43 3.85
2907 5135 8.682936 ACAATACTCTGTTAATCATTGGGATC 57.317 34.615 0.00 0.00 34.28 3.36
2908 5136 8.274322 ACAATACTCTGTTAATCATTGGGATCA 58.726 33.333 0.00 0.00 34.28 2.92
2909 5137 9.293404 CAATACTCTGTTAATCATTGGGATCAT 57.707 33.333 0.00 0.00 34.28 2.45
2910 5138 9.512588 AATACTCTGTTAATCATTGGGATCATC 57.487 33.333 0.00 0.00 34.28 2.92
2911 5139 7.146715 ACTCTGTTAATCATTGGGATCATCT 57.853 36.000 0.00 0.00 34.28 2.90
2912 5140 7.222872 ACTCTGTTAATCATTGGGATCATCTC 58.777 38.462 0.00 0.00 34.28 2.75
2913 5141 6.537355 TCTGTTAATCATTGGGATCATCTCC 58.463 40.000 0.00 0.00 44.11 3.71
2914 5142 6.331042 TCTGTTAATCATTGGGATCATCTCCT 59.669 38.462 0.00 0.00 44.28 3.69
2915 5143 6.537355 TGTTAATCATTGGGATCATCTCCTC 58.463 40.000 0.00 0.00 44.28 3.71
2916 5144 4.654389 AATCATTGGGATCATCTCCTCC 57.346 45.455 0.00 0.00 44.28 4.30
2917 5145 3.064773 TCATTGGGATCATCTCCTCCA 57.935 47.619 0.00 0.00 44.28 3.86
2918 5146 3.605879 TCATTGGGATCATCTCCTCCAT 58.394 45.455 0.00 0.00 44.28 3.41
2919 5147 3.586174 TCATTGGGATCATCTCCTCCATC 59.414 47.826 0.00 0.00 44.28 3.51
2920 5148 2.035910 TGGGATCATCTCCTCCATCC 57.964 55.000 0.00 0.00 44.28 3.51
2921 5149 1.223858 TGGGATCATCTCCTCCATCCA 59.776 52.381 0.00 0.00 44.28 3.41
2922 5150 2.342659 GGGATCATCTCCTCCATCCAA 58.657 52.381 0.00 0.00 44.28 3.53
2923 5151 2.713167 GGGATCATCTCCTCCATCCAAA 59.287 50.000 0.00 0.00 44.28 3.28
2924 5152 3.333082 GGGATCATCTCCTCCATCCAAAT 59.667 47.826 0.00 0.00 44.28 2.32
2925 5153 4.537688 GGGATCATCTCCTCCATCCAAATA 59.462 45.833 0.00 0.00 44.28 1.40
2926 5154 5.193325 GGGATCATCTCCTCCATCCAAATAT 59.807 44.000 0.00 0.00 44.28 1.28
2927 5155 6.388100 GGGATCATCTCCTCCATCCAAATATA 59.612 42.308 0.00 0.00 44.28 0.86
2928 5156 7.278875 GGATCATCTCCTCCATCCAAATATAC 58.721 42.308 0.00 0.00 41.29 1.47
2929 5157 7.092712 GGATCATCTCCTCCATCCAAATATACA 60.093 40.741 0.00 0.00 41.29 2.29
2930 5158 7.819521 TCATCTCCTCCATCCAAATATACAT 57.180 36.000 0.00 0.00 0.00 2.29
2931 5159 8.223378 TCATCTCCTCCATCCAAATATACATT 57.777 34.615 0.00 0.00 0.00 2.71
2932 5160 9.337714 TCATCTCCTCCATCCAAATATACATTA 57.662 33.333 0.00 0.00 0.00 1.90
2933 5161 9.610705 CATCTCCTCCATCCAAATATACATTAG 57.389 37.037 0.00 0.00 0.00 1.73
2934 5162 7.624549 TCTCCTCCATCCAAATATACATTAGC 58.375 38.462 0.00 0.00 0.00 3.09
2935 5163 7.237471 TCTCCTCCATCCAAATATACATTAGCA 59.763 37.037 0.00 0.00 0.00 3.49
2936 5164 7.168219 TCCTCCATCCAAATATACATTAGCAC 58.832 38.462 0.00 0.00 0.00 4.40
2937 5165 6.375455 CCTCCATCCAAATATACATTAGCACC 59.625 42.308 0.00 0.00 0.00 5.01
2938 5166 6.846988 TCCATCCAAATATACATTAGCACCA 58.153 36.000 0.00 0.00 0.00 4.17
2939 5167 6.714810 TCCATCCAAATATACATTAGCACCAC 59.285 38.462 0.00 0.00 0.00 4.16
2940 5168 6.071952 CCATCCAAATATACATTAGCACCACC 60.072 42.308 0.00 0.00 0.00 4.61
2941 5169 6.007485 TCCAAATATACATTAGCACCACCA 57.993 37.500 0.00 0.00 0.00 4.17
2942 5170 6.609876 TCCAAATATACATTAGCACCACCAT 58.390 36.000 0.00 0.00 0.00 3.55
2943 5171 7.750655 TCCAAATATACATTAGCACCACCATA 58.249 34.615 0.00 0.00 0.00 2.74
2944 5172 8.390143 TCCAAATATACATTAGCACCACCATAT 58.610 33.333 0.00 0.00 0.00 1.78
2945 5173 8.677300 CCAAATATACATTAGCACCACCATATC 58.323 37.037 0.00 0.00 0.00 1.63
2946 5174 8.677300 CAAATATACATTAGCACCACCATATCC 58.323 37.037 0.00 0.00 0.00 2.59
2947 5175 5.841267 ATACATTAGCACCACCATATCCA 57.159 39.130 0.00 0.00 0.00 3.41
2948 5176 4.729552 ACATTAGCACCACCATATCCAT 57.270 40.909 0.00 0.00 0.00 3.41
2949 5177 4.655963 ACATTAGCACCACCATATCCATC 58.344 43.478 0.00 0.00 0.00 3.51
2950 5178 4.104579 ACATTAGCACCACCATATCCATCA 59.895 41.667 0.00 0.00 0.00 3.07
2951 5179 2.645838 AGCACCACCATATCCATCAC 57.354 50.000 0.00 0.00 0.00 3.06
2952 5180 1.143684 AGCACCACCATATCCATCACC 59.856 52.381 0.00 0.00 0.00 4.02
2953 5181 1.143684 GCACCACCATATCCATCACCT 59.856 52.381 0.00 0.00 0.00 4.00
2954 5182 2.371841 GCACCACCATATCCATCACCTA 59.628 50.000 0.00 0.00 0.00 3.08
2955 5183 3.807209 GCACCACCATATCCATCACCTAC 60.807 52.174 0.00 0.00 0.00 3.18
2956 5184 3.390967 CACCACCATATCCATCACCTACA 59.609 47.826 0.00 0.00 0.00 2.74
2957 5185 4.042062 CACCACCATATCCATCACCTACAT 59.958 45.833 0.00 0.00 0.00 2.29
2958 5186 4.287067 ACCACCATATCCATCACCTACATC 59.713 45.833 0.00 0.00 0.00 3.06
2959 5187 4.533707 CCACCATATCCATCACCTACATCT 59.466 45.833 0.00 0.00 0.00 2.90
2960 5188 5.337894 CCACCATATCCATCACCTACATCTC 60.338 48.000 0.00 0.00 0.00 2.75
2961 5189 4.780021 ACCATATCCATCACCTACATCTCC 59.220 45.833 0.00 0.00 0.00 3.71
2962 5190 4.163078 CCATATCCATCACCTACATCTCCC 59.837 50.000 0.00 0.00 0.00 4.30
2963 5191 2.103153 TCCATCACCTACATCTCCCC 57.897 55.000 0.00 0.00 0.00 4.81
2964 5192 1.293763 TCCATCACCTACATCTCCCCA 59.706 52.381 0.00 0.00 0.00 4.96
2965 5193 2.089982 TCCATCACCTACATCTCCCCAT 60.090 50.000 0.00 0.00 0.00 4.00
2966 5194 3.143933 TCCATCACCTACATCTCCCCATA 59.856 47.826 0.00 0.00 0.00 2.74
2967 5195 3.261897 CCATCACCTACATCTCCCCATAC 59.738 52.174 0.00 0.00 0.00 2.39
2968 5196 3.993658 TCACCTACATCTCCCCATACT 57.006 47.619 0.00 0.00 0.00 2.12
2969 5197 4.280789 TCACCTACATCTCCCCATACTT 57.719 45.455 0.00 0.00 0.00 2.24
2970 5198 4.631234 TCACCTACATCTCCCCATACTTT 58.369 43.478 0.00 0.00 0.00 2.66
2971 5199 4.654262 TCACCTACATCTCCCCATACTTTC 59.346 45.833 0.00 0.00 0.00 2.62
2972 5200 3.974642 ACCTACATCTCCCCATACTTTCC 59.025 47.826 0.00 0.00 0.00 3.13
2973 5201 3.006967 CCTACATCTCCCCATACTTTCCG 59.993 52.174 0.00 0.00 0.00 4.30
2974 5202 2.759355 ACATCTCCCCATACTTTCCGA 58.241 47.619 0.00 0.00 0.00 4.55
2975 5203 3.318313 ACATCTCCCCATACTTTCCGAT 58.682 45.455 0.00 0.00 0.00 4.18
2976 5204 3.325135 ACATCTCCCCATACTTTCCGATC 59.675 47.826 0.00 0.00 0.00 3.69
2977 5205 3.330126 TCTCCCCATACTTTCCGATCT 57.670 47.619 0.00 0.00 0.00 2.75
2978 5206 4.464652 TCTCCCCATACTTTCCGATCTA 57.535 45.455 0.00 0.00 0.00 1.98
2979 5207 5.011982 TCTCCCCATACTTTCCGATCTAT 57.988 43.478 0.00 0.00 0.00 1.98
2980 5208 4.772624 TCTCCCCATACTTTCCGATCTATG 59.227 45.833 0.00 0.00 0.00 2.23
2981 5209 4.747583 TCCCCATACTTTCCGATCTATGA 58.252 43.478 0.00 0.00 0.00 2.15
2982 5210 5.152193 TCCCCATACTTTCCGATCTATGAA 58.848 41.667 0.00 0.00 0.00 2.57
2983 5211 5.011738 TCCCCATACTTTCCGATCTATGAAC 59.988 44.000 0.00 0.00 0.00 3.18
2984 5212 5.012148 CCCCATACTTTCCGATCTATGAACT 59.988 44.000 0.00 0.00 0.00 3.01
2985 5213 6.210784 CCCCATACTTTCCGATCTATGAACTA 59.789 42.308 0.00 0.00 0.00 2.24
2986 5214 7.093289 CCCCATACTTTCCGATCTATGAACTAT 60.093 40.741 0.00 0.00 0.00 2.12
2987 5215 8.314751 CCCATACTTTCCGATCTATGAACTATT 58.685 37.037 0.00 0.00 0.00 1.73
2991 5219 8.480133 ACTTTCCGATCTATGAACTATTACCT 57.520 34.615 0.00 0.00 0.00 3.08
2992 5220 8.578151 ACTTTCCGATCTATGAACTATTACCTC 58.422 37.037 0.00 0.00 0.00 3.85
2993 5221 8.473358 TTTCCGATCTATGAACTATTACCTCA 57.527 34.615 0.00 0.00 0.00 3.86
2994 5222 8.473358 TTCCGATCTATGAACTATTACCTCAA 57.527 34.615 0.00 0.00 0.00 3.02
2995 5223 8.473358 TCCGATCTATGAACTATTACCTCAAA 57.527 34.615 0.00 0.00 0.00 2.69
2996 5224 8.358148 TCCGATCTATGAACTATTACCTCAAAC 58.642 37.037 0.00 0.00 0.00 2.93
2997 5225 7.599245 CCGATCTATGAACTATTACCTCAAACC 59.401 40.741 0.00 0.00 0.00 3.27
2998 5226 7.326305 CGATCTATGAACTATTACCTCAAACCG 59.674 40.741 0.00 0.00 0.00 4.44
2999 5227 7.414222 TCTATGAACTATTACCTCAAACCGT 57.586 36.000 0.00 0.00 0.00 4.83
3000 5228 7.844009 TCTATGAACTATTACCTCAAACCGTT 58.156 34.615 0.00 0.00 0.00 4.44
3001 5229 6.737254 ATGAACTATTACCTCAAACCGTTG 57.263 37.500 0.00 0.00 35.95 4.10
3002 5230 5.613329 TGAACTATTACCTCAAACCGTTGT 58.387 37.500 0.00 0.00 36.07 3.32
3003 5231 6.056884 TGAACTATTACCTCAAACCGTTGTT 58.943 36.000 0.00 0.00 36.07 2.83
3004 5232 5.934935 ACTATTACCTCAAACCGTTGTTG 57.065 39.130 0.00 0.00 36.07 3.33
3005 5233 5.613329 ACTATTACCTCAAACCGTTGTTGA 58.387 37.500 0.00 0.00 36.07 3.18
3006 5234 5.699458 ACTATTACCTCAAACCGTTGTTGAG 59.301 40.000 11.18 11.18 36.07 3.02
3007 5235 2.702592 ACCTCAAACCGTTGTTGAGA 57.297 45.000 17.05 2.18 34.39 3.27
3008 5236 3.208747 ACCTCAAACCGTTGTTGAGAT 57.791 42.857 17.05 2.22 34.39 2.75
3009 5237 3.551846 ACCTCAAACCGTTGTTGAGATT 58.448 40.909 17.05 5.42 34.39 2.40
3010 5238 4.710324 ACCTCAAACCGTTGTTGAGATTA 58.290 39.130 17.05 0.00 34.39 1.75
3011 5239 4.514066 ACCTCAAACCGTTGTTGAGATTAC 59.486 41.667 17.05 0.00 34.39 1.89
3012 5240 4.083484 CCTCAAACCGTTGTTGAGATTACC 60.083 45.833 17.05 0.00 34.39 2.85
3013 5241 4.710324 TCAAACCGTTGTTGAGATTACCT 58.290 39.130 0.00 0.00 36.07 3.08
3014 5242 5.856156 TCAAACCGTTGTTGAGATTACCTA 58.144 37.500 0.00 0.00 36.07 3.08
3015 5243 5.929992 TCAAACCGTTGTTGAGATTACCTAG 59.070 40.000 0.00 0.00 36.07 3.02
3016 5244 5.479124 AACCGTTGTTGAGATTACCTAGT 57.521 39.130 0.00 0.00 32.13 2.57
3017 5245 6.594788 AACCGTTGTTGAGATTACCTAGTA 57.405 37.500 0.00 0.00 32.13 1.82
3018 5246 6.786967 ACCGTTGTTGAGATTACCTAGTAT 57.213 37.500 0.00 0.00 0.00 2.12
3019 5247 7.179076 ACCGTTGTTGAGATTACCTAGTATT 57.821 36.000 0.00 0.00 0.00 1.89
3020 5248 7.039882 ACCGTTGTTGAGATTACCTAGTATTG 58.960 38.462 0.00 0.00 0.00 1.90
3021 5249 7.093640 ACCGTTGTTGAGATTACCTAGTATTGA 60.094 37.037 0.00 0.00 0.00 2.57
3022 5250 7.926555 CCGTTGTTGAGATTACCTAGTATTGAT 59.073 37.037 0.00 0.00 0.00 2.57
3023 5251 9.314321 CGTTGTTGAGATTACCTAGTATTGATT 57.686 33.333 0.00 0.00 0.00 2.57
3048 5276 7.873739 AATGCTTAAAGTGAGTAAATTGCAC 57.126 32.000 0.00 0.00 0.00 4.57
3049 5277 5.448438 TGCTTAAAGTGAGTAAATTGCACG 58.552 37.500 0.00 0.00 37.60 5.34
3050 5278 5.237561 TGCTTAAAGTGAGTAAATTGCACGA 59.762 36.000 0.00 0.00 37.60 4.35
3051 5279 6.140110 GCTTAAAGTGAGTAAATTGCACGAA 58.860 36.000 0.00 0.00 37.60 3.85
3052 5280 6.635239 GCTTAAAGTGAGTAAATTGCACGAAA 59.365 34.615 0.00 0.00 37.60 3.46
3053 5281 7.357287 GCTTAAAGTGAGTAAATTGCACGAAAC 60.357 37.037 0.00 0.00 37.60 2.78
3054 5282 4.483476 AGTGAGTAAATTGCACGAAACC 57.517 40.909 0.00 0.00 37.60 3.27
3055 5283 3.880490 AGTGAGTAAATTGCACGAAACCA 59.120 39.130 0.00 0.00 37.60 3.67
3056 5284 3.972502 GTGAGTAAATTGCACGAAACCAC 59.027 43.478 0.00 0.00 0.00 4.16
3057 5285 3.003897 TGAGTAAATTGCACGAAACCACC 59.996 43.478 0.00 0.00 0.00 4.61
3058 5286 2.952978 AGTAAATTGCACGAAACCACCA 59.047 40.909 0.00 0.00 0.00 4.17
3059 5287 2.217429 AAATTGCACGAAACCACCAC 57.783 45.000 0.00 0.00 0.00 4.16
3060 5288 1.398692 AATTGCACGAAACCACCACT 58.601 45.000 0.00 0.00 0.00 4.00
3061 5289 1.398692 ATTGCACGAAACCACCACTT 58.601 45.000 0.00 0.00 0.00 3.16
3062 5290 1.178276 TTGCACGAAACCACCACTTT 58.822 45.000 0.00 0.00 0.00 2.66
3063 5291 0.453793 TGCACGAAACCACCACTTTG 59.546 50.000 0.00 0.00 0.00 2.77
3064 5292 0.454196 GCACGAAACCACCACTTTGT 59.546 50.000 0.00 0.00 0.00 2.83
3065 5293 1.671845 GCACGAAACCACCACTTTGTA 59.328 47.619 0.00 0.00 0.00 2.41
3066 5294 2.286772 GCACGAAACCACCACTTTGTAG 60.287 50.000 0.00 0.00 0.00 2.74
3067 5295 2.289547 CACGAAACCACCACTTTGTAGG 59.710 50.000 0.00 0.00 0.00 3.18
3068 5296 1.265905 CGAAACCACCACTTTGTAGGC 59.734 52.381 0.00 0.00 0.00 3.93
3069 5297 2.583143 GAAACCACCACTTTGTAGGCT 58.417 47.619 0.00 0.00 0.00 4.58
3070 5298 3.746940 GAAACCACCACTTTGTAGGCTA 58.253 45.455 0.00 0.00 0.00 3.93
3071 5299 3.418684 AACCACCACTTTGTAGGCTAG 57.581 47.619 0.00 0.00 0.00 3.42
3072 5300 1.628846 ACCACCACTTTGTAGGCTAGG 59.371 52.381 0.00 0.00 0.00 3.02
3073 5301 1.628846 CCACCACTTTGTAGGCTAGGT 59.371 52.381 0.00 0.00 0.00 3.08
3074 5302 2.039879 CCACCACTTTGTAGGCTAGGTT 59.960 50.000 0.00 0.00 0.00 3.50
3075 5303 3.262405 CCACCACTTTGTAGGCTAGGTTA 59.738 47.826 0.00 0.00 0.00 2.85
3076 5304 4.504858 CACCACTTTGTAGGCTAGGTTAG 58.495 47.826 0.00 0.00 0.00 2.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 1.987855 CCTTGACCCCGTCTAGCCA 60.988 63.158 0.00 0.00 34.92 4.75
127 128 2.047560 GCGGCGTCTTGGTACCTT 60.048 61.111 14.36 0.00 0.00 3.50
157 158 0.394565 GTCTCTTGGCACTGTCCTGT 59.605 55.000 0.00 0.00 0.00 4.00
171 172 7.177744 TGTTTTTCCTTTTGTAGGTTTGTCTCT 59.822 33.333 0.00 0.00 45.03 3.10
183 185 8.519799 TCTCTAGAATGTGTTTTTCCTTTTGT 57.480 30.769 0.00 0.00 0.00 2.83
374 381 2.646719 CTGGTTCGTCGACGGGAA 59.353 61.111 35.05 21.62 40.29 3.97
428 435 0.523966 CGATGCCGATCTACCTCCTC 59.476 60.000 0.00 0.00 38.22 3.71
445 452 1.152735 CTAGGAGCTAGGGTGGCGA 60.153 63.158 0.00 0.00 31.03 5.54
545 553 0.037303 CTGGTCTTGGACATGGTGCT 59.963 55.000 0.00 0.00 33.68 4.40
624 632 7.253422 CCAAGAGAACAAACATCCACAATATC 58.747 38.462 0.00 0.00 0.00 1.63
704 2583 2.356125 CGGTCCAATGAAGATGGTCCTT 60.356 50.000 7.14 0.00 42.03 3.36
705 2584 1.210478 CGGTCCAATGAAGATGGTCCT 59.790 52.381 7.14 0.00 42.03 3.85
848 2742 2.818130 AGGCATGCAACAATTCGTTT 57.182 40.000 21.36 0.00 34.86 3.60
855 2749 3.825585 TGAACTGATTAGGCATGCAACAA 59.174 39.130 21.36 10.10 0.00 2.83
856 2750 3.419943 TGAACTGATTAGGCATGCAACA 58.580 40.909 21.36 10.21 0.00 3.33
857 2751 4.644103 ATGAACTGATTAGGCATGCAAC 57.356 40.909 21.36 2.42 0.00 4.17
944 2855 4.093743 GGAGAAAGAAAGAGGGAGAGAGT 58.906 47.826 0.00 0.00 0.00 3.24
952 2863 6.536941 GCTTACTACATGGAGAAAGAAAGAGG 59.463 42.308 13.29 0.00 0.00 3.69
957 2868 5.755409 TGGCTTACTACATGGAGAAAGAA 57.245 39.130 13.29 0.00 0.00 2.52
961 2872 4.534500 TCCTTTGGCTTACTACATGGAGAA 59.466 41.667 13.29 0.70 0.00 2.87
1019 2930 2.172505 TGACAACACAGAGACACCCAAT 59.827 45.455 0.00 0.00 0.00 3.16
1020 2931 1.557371 TGACAACACAGAGACACCCAA 59.443 47.619 0.00 0.00 0.00 4.12
1023 2987 3.466836 TCAATGACAACACAGAGACACC 58.533 45.455 0.00 0.00 0.00 4.16
1028 2992 7.194607 ACATAAACTCAATGACAACACAGAG 57.805 36.000 0.00 0.00 36.77 3.35
1030 2994 7.642669 AGAACATAAACTCAATGACAACACAG 58.357 34.615 0.00 0.00 0.00 3.66
1044 3019 9.555727 ACACAATTGTACTGTAGAACATAAACT 57.444 29.630 11.53 0.00 32.60 2.66
1059 3034 4.623167 TGCAACACAAACACACAATTGTAC 59.377 37.500 11.53 0.00 37.66 2.90
1093 3104 8.257306 ACACCACAAACATATAAATCCCAAATC 58.743 33.333 0.00 0.00 0.00 2.17
1099 3110 6.483687 GTCGACACCACAAACATATAAATCC 58.516 40.000 11.55 0.00 0.00 3.01
1121 3132 0.803117 TGGAGATCTGTGTCGTCGTC 59.197 55.000 0.00 0.00 0.00 4.20
1122 3133 0.522180 GTGGAGATCTGTGTCGTCGT 59.478 55.000 0.00 0.00 0.00 4.34
1123 3134 0.521450 CGTGGAGATCTGTGTCGTCG 60.521 60.000 0.00 0.00 0.00 5.12
1124 3135 0.798771 GCGTGGAGATCTGTGTCGTC 60.799 60.000 0.00 0.00 0.00 4.20
1243 3254 0.845337 TGGCCAGATGCATGGATGTA 59.155 50.000 10.63 0.00 43.57 2.29
1256 3267 5.483231 TGAGGAGATAGATAAAGATGGCCAG 59.517 44.000 13.05 0.00 0.00 4.85
1257 3268 5.406163 TGAGGAGATAGATAAAGATGGCCA 58.594 41.667 8.56 8.56 0.00 5.36
1258 3269 6.212388 TCTTGAGGAGATAGATAAAGATGGCC 59.788 42.308 0.00 0.00 0.00 5.36
1259 3270 7.238486 TCTTGAGGAGATAGATAAAGATGGC 57.762 40.000 0.00 0.00 0.00 4.40
1268 3279 8.721479 TCCATCAAAATTCTTGAGGAGATAGAT 58.279 33.333 13.12 0.00 32.54 1.98
1270 3281 8.743085 TTCCATCAAAATTCTTGAGGAGATAG 57.257 34.615 13.12 1.88 32.54 2.08
1329 3385 9.777575 GCACGTACATACATACATACATACATA 57.222 33.333 0.00 0.00 0.00 2.29
1330 3386 8.301002 TGCACGTACATACATACATACATACAT 58.699 33.333 0.00 0.00 0.00 2.29
1331 3387 7.649973 TGCACGTACATACATACATACATACA 58.350 34.615 0.00 0.00 0.00 2.29
1332 3388 8.019094 TCTGCACGTACATACATACATACATAC 58.981 37.037 0.00 0.00 0.00 2.39
1333 3389 8.019094 GTCTGCACGTACATACATACATACATA 58.981 37.037 0.00 0.00 0.00 2.29
1334 3390 6.861572 GTCTGCACGTACATACATACATACAT 59.138 38.462 0.00 0.00 0.00 2.29
1335 3391 6.183360 TGTCTGCACGTACATACATACATACA 60.183 38.462 3.06 0.00 0.00 2.29
1336 3392 6.203647 TGTCTGCACGTACATACATACATAC 58.796 40.000 3.06 0.00 0.00 2.39
1337 3393 6.380095 TGTCTGCACGTACATACATACATA 57.620 37.500 3.06 0.00 0.00 2.29
1338 3394 5.257082 TGTCTGCACGTACATACATACAT 57.743 39.130 3.06 0.00 0.00 2.29
1339 3395 4.705337 TGTCTGCACGTACATACATACA 57.295 40.909 3.06 0.00 0.00 2.29
1340 3396 4.503007 CCTTGTCTGCACGTACATACATAC 59.497 45.833 7.71 0.00 0.00 2.39
1359 3415 1.871418 TGGTCCTGATCCTCTCCTTG 58.129 55.000 0.00 0.00 0.00 3.61
1360 3416 2.249743 AGATGGTCCTGATCCTCTCCTT 59.750 50.000 0.00 0.00 0.00 3.36
1449 3505 1.000396 GCCTCCCTTGCACCTGATT 60.000 57.895 0.00 0.00 0.00 2.57
1465 3521 2.409870 CGCCCTTGATCACCTTGCC 61.410 63.158 0.00 0.00 0.00 4.52
1467 3523 1.361668 CGACGCCCTTGATCACCTTG 61.362 60.000 0.00 0.00 0.00 3.61
1483 3539 1.069906 GTTGTGTTGCAGGATGTCGAC 60.070 52.381 9.11 9.11 39.31 4.20
1486 3542 0.238289 CCGTTGTGTTGCAGGATGTC 59.762 55.000 0.00 0.00 39.31 3.06
1516 3572 2.950673 GTTGTTCATTGCCGGCGA 59.049 55.556 21.20 21.20 0.00 5.54
1559 3615 3.785189 GATCGCGGCGGCTCCTTTA 62.785 63.158 23.46 0.00 36.88 1.85
1574 3630 1.530293 GCTCATGAACTGGCGATGATC 59.470 52.381 0.00 0.00 0.00 2.92
1585 3641 2.690778 GCGTGGGTGGCTCATGAAC 61.691 63.158 0.00 0.00 0.00 3.18
1653 3709 1.518572 CGGTGATACGTGGCTGTCC 60.519 63.158 0.00 0.00 0.00 4.02
1693 3749 1.553690 TTCTCCCCCGGCTTCTTCTG 61.554 60.000 0.00 0.00 0.00 3.02
1726 3782 1.578206 GAAGAACCCAACGGCAGCTC 61.578 60.000 0.00 0.00 0.00 4.09
1816 3875 1.305046 ACGAAGGGATCTCCACCGT 60.305 57.895 11.28 11.28 39.65 4.83
2131 4199 8.421002 ACACAAACTTTCTAAGCAACCATTTAT 58.579 29.630 0.00 0.00 0.00 1.40
2132 4200 7.777095 ACACAAACTTTCTAAGCAACCATTTA 58.223 30.769 0.00 0.00 0.00 1.40
2154 4232 6.854496 TTGGAAGTCAACACATAGTAACAC 57.146 37.500 0.00 0.00 0.00 3.32
2162 4240 6.735694 GCAACAGTTATTGGAAGTCAACACAT 60.736 38.462 0.00 0.00 38.31 3.21
2163 4241 5.449862 GCAACAGTTATTGGAAGTCAACACA 60.450 40.000 0.00 0.00 38.31 3.72
2243 4341 8.907222 AACCAATAAAATTATGCCATGAATCC 57.093 30.769 0.00 0.00 0.00 3.01
2290 4388 2.837532 AAACAAACATGCCCCACATC 57.162 45.000 0.00 0.00 36.64 3.06
2471 4642 4.351874 AACCTGTACTTGCAGAGCTTTA 57.648 40.909 0.00 0.00 38.70 1.85
2479 4650 3.887352 TGTTGGTTAACCTGTACTTGCA 58.113 40.909 24.78 9.35 35.92 4.08
2480 4651 5.447624 AATGTTGGTTAACCTGTACTTGC 57.552 39.130 24.78 7.15 35.92 4.01
2507 4678 4.723789 TCCAATTCTGCCTCCTAATCTTCT 59.276 41.667 0.00 0.00 0.00 2.85
2604 4832 7.754924 GGTATTGTTGGAGATGTGTATGTTTTG 59.245 37.037 0.00 0.00 0.00 2.44
2605 4833 7.450014 TGGTATTGTTGGAGATGTGTATGTTTT 59.550 33.333 0.00 0.00 0.00 2.43
2619 4847 9.757227 CTTTTCATAACTTTTGGTATTGTTGGA 57.243 29.630 0.00 0.00 27.95 3.53
2645 4873 5.393461 GCCTACCCAATATTAGCATTGCATC 60.393 44.000 11.91 0.00 35.06 3.91
2665 4893 4.320275 CGACGAGCTTTGTAGATATGCCTA 60.320 45.833 0.00 0.00 0.00 3.93
2666 4894 3.551046 CGACGAGCTTTGTAGATATGCCT 60.551 47.826 0.00 0.00 0.00 4.75
2667 4895 2.726760 CGACGAGCTTTGTAGATATGCC 59.273 50.000 0.00 0.00 0.00 4.40
2668 4896 2.726760 CCGACGAGCTTTGTAGATATGC 59.273 50.000 0.00 0.00 0.00 3.14
2681 4909 2.284855 CGTGTTATTTAAGCCGACGAGC 60.285 50.000 0.00 0.00 0.00 5.03
2682 4910 2.280708 CCGTGTTATTTAAGCCGACGAG 59.719 50.000 0.00 0.00 0.00 4.18
2683 4911 2.261345 CCGTGTTATTTAAGCCGACGA 58.739 47.619 0.00 0.00 0.00 4.20
2684 4912 1.267186 GCCGTGTTATTTAAGCCGACG 60.267 52.381 0.00 0.00 0.00 5.12
2685 4913 1.063027 GGCCGTGTTATTTAAGCCGAC 59.937 52.381 0.00 0.00 0.00 4.79
2688 4916 3.507786 CAAAGGCCGTGTTATTTAAGCC 58.492 45.455 0.00 0.00 40.79 4.35
2696 4924 1.323412 AATGTGCAAAGGCCGTGTTA 58.677 45.000 10.70 0.00 40.13 2.41
2711 4939 4.020218 AGCCGGTAGATGCACATATAATGT 60.020 41.667 1.90 0.00 46.22 2.71
2722 4950 1.153369 TTGCTCAGCCGGTAGATGC 60.153 57.895 1.90 7.85 0.00 3.91
2775 5003 6.547880 TCACTAGAAGGATTGGAGATGAGTAC 59.452 42.308 0.00 0.00 0.00 2.73
2815 5043 3.967326 TGGATCCTTCGAGTATTGGTGAT 59.033 43.478 14.23 0.00 0.00 3.06
2816 5044 3.371034 TGGATCCTTCGAGTATTGGTGA 58.629 45.455 14.23 0.00 0.00 4.02
2817 5045 3.384789 TCTGGATCCTTCGAGTATTGGTG 59.615 47.826 14.23 0.00 0.00 4.17
2818 5046 3.643237 TCTGGATCCTTCGAGTATTGGT 58.357 45.455 14.23 0.00 0.00 3.67
2819 5047 4.672587 TTCTGGATCCTTCGAGTATTGG 57.327 45.455 14.23 0.00 0.00 3.16
2820 5048 5.698545 GGAATTCTGGATCCTTCGAGTATTG 59.301 44.000 14.23 0.00 31.19 1.90
2821 5049 5.366768 TGGAATTCTGGATCCTTCGAGTATT 59.633 40.000 14.23 7.29 36.64 1.89
2822 5050 4.901849 TGGAATTCTGGATCCTTCGAGTAT 59.098 41.667 14.23 0.00 36.64 2.12
2823 5051 4.286707 TGGAATTCTGGATCCTTCGAGTA 58.713 43.478 14.23 0.00 36.64 2.59
2824 5052 3.107601 TGGAATTCTGGATCCTTCGAGT 58.892 45.455 14.23 1.08 36.64 4.18
2825 5053 3.827008 TGGAATTCTGGATCCTTCGAG 57.173 47.619 14.23 1.44 36.64 4.04
2826 5054 3.071602 GGATGGAATTCTGGATCCTTCGA 59.928 47.826 14.23 5.98 39.54 3.71
2827 5055 3.406764 GGATGGAATTCTGGATCCTTCG 58.593 50.000 14.23 1.52 39.54 3.79
2828 5056 3.397282 AGGGATGGAATTCTGGATCCTTC 59.603 47.826 14.23 8.09 38.51 3.46
2829 5057 3.397282 GAGGGATGGAATTCTGGATCCTT 59.603 47.826 14.23 17.23 35.61 3.36
2830 5058 2.985311 GAGGGATGGAATTCTGGATCCT 59.015 50.000 14.23 14.93 35.61 3.24
2831 5059 2.985311 AGAGGGATGGAATTCTGGATCC 59.015 50.000 4.20 4.20 34.67 3.36
2832 5060 4.224818 CCTAGAGGGATGGAATTCTGGATC 59.775 50.000 5.23 5.00 37.23 3.36
2833 5061 4.140350 TCCTAGAGGGATGGAATTCTGGAT 60.140 45.833 5.23 0.00 39.58 3.41
2834 5062 3.209843 TCCTAGAGGGATGGAATTCTGGA 59.790 47.826 5.23 0.00 39.58 3.86
2835 5063 3.591789 TCCTAGAGGGATGGAATTCTGG 58.408 50.000 5.23 0.00 39.58 3.86
2836 5064 5.226194 CTTCCTAGAGGGATGGAATTCTG 57.774 47.826 5.23 0.00 44.66 3.02
2848 5076 2.438800 TCGAGTTCCCTTCCTAGAGG 57.561 55.000 0.00 0.00 36.52 3.69
2849 5077 2.100087 GCTTCGAGTTCCCTTCCTAGAG 59.900 54.545 0.00 0.00 0.00 2.43
2850 5078 2.100989 GCTTCGAGTTCCCTTCCTAGA 58.899 52.381 0.00 0.00 0.00 2.43
2851 5079 1.137282 GGCTTCGAGTTCCCTTCCTAG 59.863 57.143 0.00 0.00 0.00 3.02
2852 5080 1.192428 GGCTTCGAGTTCCCTTCCTA 58.808 55.000 0.00 0.00 0.00 2.94
2853 5081 0.836400 TGGCTTCGAGTTCCCTTCCT 60.836 55.000 0.00 0.00 0.00 3.36
2854 5082 0.253327 ATGGCTTCGAGTTCCCTTCC 59.747 55.000 0.00 0.00 0.00 3.46
2855 5083 1.657822 GATGGCTTCGAGTTCCCTTC 58.342 55.000 0.00 0.00 0.00 3.46
2856 5084 3.863407 GATGGCTTCGAGTTCCCTT 57.137 52.632 0.00 0.00 0.00 3.95
2866 5094 4.572389 AGTATTGTTGATGACGATGGCTTC 59.428 41.667 0.00 0.00 34.18 3.86
2867 5095 4.517285 AGTATTGTTGATGACGATGGCTT 58.483 39.130 0.00 0.00 34.18 4.35
2868 5096 4.122776 GAGTATTGTTGATGACGATGGCT 58.877 43.478 0.00 0.00 34.18 4.75
2869 5097 4.025396 CAGAGTATTGTTGATGACGATGGC 60.025 45.833 0.00 0.00 34.18 4.40
2870 5098 5.111989 ACAGAGTATTGTTGATGACGATGG 58.888 41.667 0.00 0.00 34.18 3.51
2871 5099 6.653273 AACAGAGTATTGTTGATGACGATG 57.347 37.500 0.00 0.00 39.68 3.84
2872 5100 8.948631 ATTAACAGAGTATTGTTGATGACGAT 57.051 30.769 0.00 0.00 41.18 3.73
2873 5101 8.032451 TGATTAACAGAGTATTGTTGATGACGA 58.968 33.333 0.00 0.00 41.18 4.20
2874 5102 8.185003 TGATTAACAGAGTATTGTTGATGACG 57.815 34.615 1.59 0.00 41.18 4.35
2877 5105 9.726232 CCAATGATTAACAGAGTATTGTTGATG 57.274 33.333 1.59 0.00 41.18 3.07
2878 5106 8.906867 CCCAATGATTAACAGAGTATTGTTGAT 58.093 33.333 1.90 0.00 41.18 2.57
2879 5107 8.106462 TCCCAATGATTAACAGAGTATTGTTGA 58.894 33.333 1.90 0.00 41.18 3.18
2880 5108 8.279970 TCCCAATGATTAACAGAGTATTGTTG 57.720 34.615 1.90 0.00 41.18 3.33
2881 5109 9.125026 GATCCCAATGATTAACAGAGTATTGTT 57.875 33.333 0.00 0.00 38.15 2.83
2882 5110 8.274322 TGATCCCAATGATTAACAGAGTATTGT 58.726 33.333 0.00 0.00 32.41 2.71
2883 5111 8.681486 TGATCCCAATGATTAACAGAGTATTG 57.319 34.615 0.00 0.00 32.41 1.90
2884 5112 9.512588 GATGATCCCAATGATTAACAGAGTATT 57.487 33.333 0.00 0.00 32.41 1.89
2885 5113 8.888419 AGATGATCCCAATGATTAACAGAGTAT 58.112 33.333 0.00 0.00 32.41 2.12
2886 5114 8.267620 AGATGATCCCAATGATTAACAGAGTA 57.732 34.615 0.00 0.00 32.41 2.59
2887 5115 7.146715 AGATGATCCCAATGATTAACAGAGT 57.853 36.000 0.00 0.00 32.41 3.24
2888 5116 6.654161 GGAGATGATCCCAATGATTAACAGAG 59.346 42.308 0.00 0.00 43.01 3.35
2889 5117 6.537355 GGAGATGATCCCAATGATTAACAGA 58.463 40.000 0.00 0.00 43.01 3.41
2890 5118 6.814506 GGAGATGATCCCAATGATTAACAG 57.185 41.667 0.00 0.00 43.01 3.16
2904 5132 7.855375 TGTATATTTGGATGGAGGAGATGATC 58.145 38.462 0.00 0.00 0.00 2.92
2905 5133 7.819521 TGTATATTTGGATGGAGGAGATGAT 57.180 36.000 0.00 0.00 0.00 2.45
2906 5134 7.819521 ATGTATATTTGGATGGAGGAGATGA 57.180 36.000 0.00 0.00 0.00 2.92
2907 5135 9.610705 CTAATGTATATTTGGATGGAGGAGATG 57.389 37.037 0.00 0.00 0.00 2.90
2908 5136 8.270744 GCTAATGTATATTTGGATGGAGGAGAT 58.729 37.037 0.00 0.00 0.00 2.75
2909 5137 7.237471 TGCTAATGTATATTTGGATGGAGGAGA 59.763 37.037 0.00 0.00 0.00 3.71
2910 5138 7.335422 GTGCTAATGTATATTTGGATGGAGGAG 59.665 40.741 0.00 0.00 0.00 3.69
2911 5139 7.168219 GTGCTAATGTATATTTGGATGGAGGA 58.832 38.462 0.00 0.00 0.00 3.71
2912 5140 6.375455 GGTGCTAATGTATATTTGGATGGAGG 59.625 42.308 0.00 0.00 0.00 4.30
2913 5141 6.942005 TGGTGCTAATGTATATTTGGATGGAG 59.058 38.462 0.00 0.00 0.00 3.86
2914 5142 6.714810 GTGGTGCTAATGTATATTTGGATGGA 59.285 38.462 0.00 0.00 0.00 3.41
2915 5143 6.071952 GGTGGTGCTAATGTATATTTGGATGG 60.072 42.308 0.00 0.00 0.00 3.51
2916 5144 6.489700 TGGTGGTGCTAATGTATATTTGGATG 59.510 38.462 0.00 0.00 0.00 3.51
2917 5145 6.609876 TGGTGGTGCTAATGTATATTTGGAT 58.390 36.000 0.00 0.00 0.00 3.41
2918 5146 6.007485 TGGTGGTGCTAATGTATATTTGGA 57.993 37.500 0.00 0.00 0.00 3.53
2919 5147 6.899393 ATGGTGGTGCTAATGTATATTTGG 57.101 37.500 0.00 0.00 0.00 3.28
2920 5148 8.677300 GGATATGGTGGTGCTAATGTATATTTG 58.323 37.037 0.00 0.00 0.00 2.32
2921 5149 8.390143 TGGATATGGTGGTGCTAATGTATATTT 58.610 33.333 0.00 0.00 0.00 1.40
2922 5150 7.927788 TGGATATGGTGGTGCTAATGTATATT 58.072 34.615 0.00 0.00 0.00 1.28
2923 5151 7.509236 TGGATATGGTGGTGCTAATGTATAT 57.491 36.000 0.00 0.00 0.00 0.86
2924 5152 6.943899 TGGATATGGTGGTGCTAATGTATA 57.056 37.500 0.00 0.00 0.00 1.47
2925 5153 5.841267 TGGATATGGTGGTGCTAATGTAT 57.159 39.130 0.00 0.00 0.00 2.29
2926 5154 5.309282 TGATGGATATGGTGGTGCTAATGTA 59.691 40.000 0.00 0.00 0.00 2.29
2927 5155 4.104579 TGATGGATATGGTGGTGCTAATGT 59.895 41.667 0.00 0.00 0.00 2.71
2928 5156 4.456911 GTGATGGATATGGTGGTGCTAATG 59.543 45.833 0.00 0.00 0.00 1.90
2929 5157 4.507335 GGTGATGGATATGGTGGTGCTAAT 60.507 45.833 0.00 0.00 0.00 1.73
2930 5158 3.181445 GGTGATGGATATGGTGGTGCTAA 60.181 47.826 0.00 0.00 0.00 3.09
2931 5159 2.371841 GGTGATGGATATGGTGGTGCTA 59.628 50.000 0.00 0.00 0.00 3.49
2932 5160 1.143684 GGTGATGGATATGGTGGTGCT 59.856 52.381 0.00 0.00 0.00 4.40
2933 5161 1.143684 AGGTGATGGATATGGTGGTGC 59.856 52.381 0.00 0.00 0.00 5.01
2934 5162 3.390967 TGTAGGTGATGGATATGGTGGTG 59.609 47.826 0.00 0.00 0.00 4.17
2935 5163 3.664320 TGTAGGTGATGGATATGGTGGT 58.336 45.455 0.00 0.00 0.00 4.16
2936 5164 4.533707 AGATGTAGGTGATGGATATGGTGG 59.466 45.833 0.00 0.00 0.00 4.61
2937 5165 5.337894 GGAGATGTAGGTGATGGATATGGTG 60.338 48.000 0.00 0.00 0.00 4.17
2938 5166 4.780021 GGAGATGTAGGTGATGGATATGGT 59.220 45.833 0.00 0.00 0.00 3.55
2939 5167 4.163078 GGGAGATGTAGGTGATGGATATGG 59.837 50.000 0.00 0.00 0.00 2.74
2940 5168 4.163078 GGGGAGATGTAGGTGATGGATATG 59.837 50.000 0.00 0.00 0.00 1.78
2941 5169 4.202934 TGGGGAGATGTAGGTGATGGATAT 60.203 45.833 0.00 0.00 0.00 1.63
2942 5170 3.143933 TGGGGAGATGTAGGTGATGGATA 59.856 47.826 0.00 0.00 0.00 2.59
2943 5171 2.089982 TGGGGAGATGTAGGTGATGGAT 60.090 50.000 0.00 0.00 0.00 3.41
2944 5172 1.293763 TGGGGAGATGTAGGTGATGGA 59.706 52.381 0.00 0.00 0.00 3.41
2945 5173 1.806496 TGGGGAGATGTAGGTGATGG 58.194 55.000 0.00 0.00 0.00 3.51
2946 5174 4.163427 AGTATGGGGAGATGTAGGTGATG 58.837 47.826 0.00 0.00 0.00 3.07
2947 5175 4.493819 AGTATGGGGAGATGTAGGTGAT 57.506 45.455 0.00 0.00 0.00 3.06
2948 5176 3.993658 AGTATGGGGAGATGTAGGTGA 57.006 47.619 0.00 0.00 0.00 4.02
2949 5177 4.202367 GGAAAGTATGGGGAGATGTAGGTG 60.202 50.000 0.00 0.00 0.00 4.00
2950 5178 3.974642 GGAAAGTATGGGGAGATGTAGGT 59.025 47.826 0.00 0.00 0.00 3.08
2951 5179 3.006967 CGGAAAGTATGGGGAGATGTAGG 59.993 52.174 0.00 0.00 0.00 3.18
2952 5180 3.895656 TCGGAAAGTATGGGGAGATGTAG 59.104 47.826 0.00 0.00 0.00 2.74
2953 5181 3.918566 TCGGAAAGTATGGGGAGATGTA 58.081 45.455 0.00 0.00 0.00 2.29
2954 5182 2.759355 TCGGAAAGTATGGGGAGATGT 58.241 47.619 0.00 0.00 0.00 3.06
2955 5183 3.580458 AGATCGGAAAGTATGGGGAGATG 59.420 47.826 0.00 0.00 0.00 2.90
2956 5184 3.863086 AGATCGGAAAGTATGGGGAGAT 58.137 45.455 0.00 0.00 0.00 2.75
2957 5185 3.330126 AGATCGGAAAGTATGGGGAGA 57.670 47.619 0.00 0.00 0.00 3.71
2958 5186 4.772624 TCATAGATCGGAAAGTATGGGGAG 59.227 45.833 0.00 0.00 0.00 4.30
2959 5187 4.747583 TCATAGATCGGAAAGTATGGGGA 58.252 43.478 0.00 0.00 0.00 4.81
2960 5188 5.012148 AGTTCATAGATCGGAAAGTATGGGG 59.988 44.000 0.12 0.00 0.00 4.96
2961 5189 6.102897 AGTTCATAGATCGGAAAGTATGGG 57.897 41.667 0.12 0.00 0.00 4.00
2965 5193 9.584008 AGGTAATAGTTCATAGATCGGAAAGTA 57.416 33.333 0.12 0.00 0.00 2.24
2966 5194 8.480133 AGGTAATAGTTCATAGATCGGAAAGT 57.520 34.615 0.12 0.00 0.00 2.66
2967 5195 8.577296 TGAGGTAATAGTTCATAGATCGGAAAG 58.423 37.037 0.12 0.00 0.00 2.62
2968 5196 8.473358 TGAGGTAATAGTTCATAGATCGGAAA 57.527 34.615 0.12 0.00 0.00 3.13
2969 5197 8.473358 TTGAGGTAATAGTTCATAGATCGGAA 57.527 34.615 0.00 0.00 0.00 4.30
2970 5198 8.358148 GTTTGAGGTAATAGTTCATAGATCGGA 58.642 37.037 0.00 0.00 0.00 4.55
2971 5199 7.599245 GGTTTGAGGTAATAGTTCATAGATCGG 59.401 40.741 0.00 0.00 0.00 4.18
2972 5200 7.326305 CGGTTTGAGGTAATAGTTCATAGATCG 59.674 40.741 0.00 0.00 0.00 3.69
2973 5201 8.142551 ACGGTTTGAGGTAATAGTTCATAGATC 58.857 37.037 0.00 0.00 0.00 2.75
2974 5202 8.019656 ACGGTTTGAGGTAATAGTTCATAGAT 57.980 34.615 0.00 0.00 0.00 1.98
2975 5203 7.414222 ACGGTTTGAGGTAATAGTTCATAGA 57.586 36.000 0.00 0.00 0.00 1.98
2976 5204 7.548075 ACAACGGTTTGAGGTAATAGTTCATAG 59.452 37.037 0.00 0.00 36.48 2.23
2977 5205 7.388437 ACAACGGTTTGAGGTAATAGTTCATA 58.612 34.615 0.00 0.00 36.48 2.15
2978 5206 6.235664 ACAACGGTTTGAGGTAATAGTTCAT 58.764 36.000 0.00 0.00 36.48 2.57
2979 5207 5.613329 ACAACGGTTTGAGGTAATAGTTCA 58.387 37.500 0.00 0.00 36.48 3.18
2980 5208 6.203338 TCAACAACGGTTTGAGGTAATAGTTC 59.797 38.462 0.00 0.00 34.21 3.01
2981 5209 6.056884 TCAACAACGGTTTGAGGTAATAGTT 58.943 36.000 0.00 0.00 34.21 2.24
2982 5210 5.613329 TCAACAACGGTTTGAGGTAATAGT 58.387 37.500 0.00 0.00 34.21 2.12
2983 5211 5.929992 TCTCAACAACGGTTTGAGGTAATAG 59.070 40.000 17.89 2.56 34.21 1.73
2984 5212 5.856156 TCTCAACAACGGTTTGAGGTAATA 58.144 37.500 17.89 1.45 34.21 0.98
2985 5213 4.710324 TCTCAACAACGGTTTGAGGTAAT 58.290 39.130 17.89 0.00 34.21 1.89
2986 5214 4.139859 TCTCAACAACGGTTTGAGGTAA 57.860 40.909 17.89 2.02 34.21 2.85
2987 5215 3.823281 TCTCAACAACGGTTTGAGGTA 57.177 42.857 17.89 2.58 34.21 3.08
2988 5216 2.702592 TCTCAACAACGGTTTGAGGT 57.297 45.000 17.89 0.20 34.21 3.85
2989 5217 4.083484 GGTAATCTCAACAACGGTTTGAGG 60.083 45.833 17.89 0.00 34.21 3.86
2990 5218 4.755123 AGGTAATCTCAACAACGGTTTGAG 59.245 41.667 13.82 13.82 34.21 3.02
2991 5219 4.710324 AGGTAATCTCAACAACGGTTTGA 58.290 39.130 0.00 0.00 34.21 2.69
2992 5220 5.699458 ACTAGGTAATCTCAACAACGGTTTG 59.301 40.000 0.00 0.00 34.21 2.93
2993 5221 5.861727 ACTAGGTAATCTCAACAACGGTTT 58.138 37.500 0.00 0.00 34.21 3.27
2994 5222 5.479124 ACTAGGTAATCTCAACAACGGTT 57.521 39.130 0.00 0.00 37.87 4.44
2995 5223 6.786967 ATACTAGGTAATCTCAACAACGGT 57.213 37.500 0.00 0.00 0.00 4.83
2996 5224 7.262772 TCAATACTAGGTAATCTCAACAACGG 58.737 38.462 0.00 0.00 0.00 4.44
2997 5225 8.873215 ATCAATACTAGGTAATCTCAACAACG 57.127 34.615 0.00 0.00 0.00 4.10
3022 5250 9.405587 GTGCAATTTACTCACTTTAAGCATTAA 57.594 29.630 0.00 0.00 39.10 1.40
3023 5251 7.748683 CGTGCAATTTACTCACTTTAAGCATTA 59.251 33.333 0.00 0.00 0.00 1.90
3024 5252 6.582295 CGTGCAATTTACTCACTTTAAGCATT 59.418 34.615 0.00 0.00 0.00 3.56
3025 5253 6.072728 TCGTGCAATTTACTCACTTTAAGCAT 60.073 34.615 0.00 0.00 0.00 3.79
3026 5254 5.237561 TCGTGCAATTTACTCACTTTAAGCA 59.762 36.000 0.00 0.00 0.00 3.91
3027 5255 5.685841 TCGTGCAATTTACTCACTTTAAGC 58.314 37.500 0.00 0.00 0.00 3.09
3028 5256 7.112984 GGTTTCGTGCAATTTACTCACTTTAAG 59.887 37.037 0.00 0.00 0.00 1.85
3029 5257 6.913673 GGTTTCGTGCAATTTACTCACTTTAA 59.086 34.615 0.00 0.00 0.00 1.52
3030 5258 6.038382 TGGTTTCGTGCAATTTACTCACTTTA 59.962 34.615 0.00 0.00 0.00 1.85
3031 5259 5.163602 TGGTTTCGTGCAATTTACTCACTTT 60.164 36.000 0.00 0.00 0.00 2.66
3032 5260 4.336993 TGGTTTCGTGCAATTTACTCACTT 59.663 37.500 0.00 0.00 0.00 3.16
3033 5261 3.880490 TGGTTTCGTGCAATTTACTCACT 59.120 39.130 0.00 0.00 0.00 3.41
3034 5262 3.972502 GTGGTTTCGTGCAATTTACTCAC 59.027 43.478 0.00 0.00 0.00 3.51
3035 5263 3.003897 GGTGGTTTCGTGCAATTTACTCA 59.996 43.478 0.00 0.00 0.00 3.41
3036 5264 3.003897 TGGTGGTTTCGTGCAATTTACTC 59.996 43.478 0.00 0.00 0.00 2.59
3037 5265 2.952978 TGGTGGTTTCGTGCAATTTACT 59.047 40.909 0.00 0.00 0.00 2.24
3038 5266 3.047093 GTGGTGGTTTCGTGCAATTTAC 58.953 45.455 0.00 0.00 0.00 2.01
3039 5267 2.952978 AGTGGTGGTTTCGTGCAATTTA 59.047 40.909 0.00 0.00 0.00 1.40
3040 5268 1.754226 AGTGGTGGTTTCGTGCAATTT 59.246 42.857 0.00 0.00 0.00 1.82
3041 5269 1.398692 AGTGGTGGTTTCGTGCAATT 58.601 45.000 0.00 0.00 0.00 2.32
3042 5270 1.398692 AAGTGGTGGTTTCGTGCAAT 58.601 45.000 0.00 0.00 0.00 3.56
3043 5271 1.135257 CAAAGTGGTGGTTTCGTGCAA 60.135 47.619 0.00 0.00 0.00 4.08
3044 5272 0.453793 CAAAGTGGTGGTTTCGTGCA 59.546 50.000 0.00 0.00 0.00 4.57
3045 5273 0.454196 ACAAAGTGGTGGTTTCGTGC 59.546 50.000 0.00 0.00 0.00 5.34
3046 5274 2.289547 CCTACAAAGTGGTGGTTTCGTG 59.710 50.000 0.00 0.00 0.00 4.35
3047 5275 2.567985 CCTACAAAGTGGTGGTTTCGT 58.432 47.619 0.00 0.00 0.00 3.85
3048 5276 1.265905 GCCTACAAAGTGGTGGTTTCG 59.734 52.381 0.00 0.00 0.00 3.46
3049 5277 2.583143 AGCCTACAAAGTGGTGGTTTC 58.417 47.619 0.00 0.00 0.00 2.78
3050 5278 2.748209 AGCCTACAAAGTGGTGGTTT 57.252 45.000 0.00 0.00 0.00 3.27
3051 5279 2.039879 CCTAGCCTACAAAGTGGTGGTT 59.960 50.000 0.00 0.00 0.00 3.67
3052 5280 1.628846 CCTAGCCTACAAAGTGGTGGT 59.371 52.381 0.00 0.00 0.00 4.16
3053 5281 1.628846 ACCTAGCCTACAAAGTGGTGG 59.371 52.381 0.00 0.00 0.00 4.61
3054 5282 3.418684 AACCTAGCCTACAAAGTGGTG 57.581 47.619 0.00 0.00 0.00 4.17
3055 5283 3.055312 GCTAACCTAGCCTACAAAGTGGT 60.055 47.826 0.00 0.00 45.95 4.16
3056 5284 3.532542 GCTAACCTAGCCTACAAAGTGG 58.467 50.000 0.00 0.00 45.95 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.