Multiple sequence alignment - TraesCS2B01G022300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G022300 chr2B 100.000 3533 0 0 1 3533 10721553 10725085 0.000000e+00 6525.0
1 TraesCS2B01G022300 chr2B 80.511 1801 278 41 290 2068 10831329 10829580 0.000000e+00 1314.0
2 TraesCS2B01G022300 chr2B 83.570 1406 203 19 290 1685 10839165 10837778 0.000000e+00 1291.0
3 TraesCS2B01G022300 chr2B 78.280 1372 257 29 360 1710 10769985 10771336 0.000000e+00 845.0
4 TraesCS2B01G022300 chr2B 75.415 1627 335 48 1715 3305 10805667 10804070 0.000000e+00 728.0
5 TraesCS2B01G022300 chr2A 88.506 1827 186 14 1715 3523 583047 581227 0.000000e+00 2189.0
6 TraesCS2B01G022300 chr2A 78.907 2982 519 72 361 3299 513492 516406 0.000000e+00 1921.0
7 TraesCS2B01G022300 chr2A 83.565 1801 259 20 290 2065 764056459 764054671 0.000000e+00 1652.0
8 TraesCS2B01G022300 chr2A 79.793 1450 248 32 290 1713 584530 583100 0.000000e+00 1013.0
9 TraesCS2B01G022300 chr2A 79.045 1341 242 28 360 1683 565865 564547 0.000000e+00 883.0
10 TraesCS2B01G022300 chr7B 84.840 1781 243 17 290 2049 683330266 683328492 0.000000e+00 1768.0
11 TraesCS2B01G022300 chr7B 78.255 2097 385 46 1250 3301 706086038 706083968 0.000000e+00 1280.0
12 TraesCS2B01G022300 chr2D 83.857 1815 258 19 275 2065 475767 477570 0.000000e+00 1696.0
13 TraesCS2B01G022300 chr2D 82.656 1649 238 23 378 2015 1525480 1523869 0.000000e+00 1417.0
14 TraesCS2B01G022300 chr2D 82.362 1372 198 25 316 1671 395910 397253 0.000000e+00 1153.0
15 TraesCS2B01G022300 chr2D 89.072 851 85 4 2099 2942 692773 691924 0.000000e+00 1050.0
16 TraesCS2B01G022300 chr2D 79.503 1449 246 37 290 1713 634850005 634851427 0.000000e+00 983.0
17 TraesCS2B01G022300 chr2D 81.810 1182 191 15 290 1452 513350 514526 0.000000e+00 970.0
18 TraesCS2B01G022300 chr2D 77.974 227 41 7 814 1035 458490 458712 2.210000e-27 134.0
19 TraesCS2B01G022300 chr2D 94.340 53 3 0 708 760 693275 693223 8.130000e-12 82.4
20 TraesCS2B01G022300 chr3B 79.655 1450 263 21 290 1714 733447557 733446115 0.000000e+00 1014.0
21 TraesCS2B01G022300 chrUn 76.514 1635 295 62 1715 3305 300262086 300263675 0.000000e+00 809.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G022300 chr2B 10721553 10725085 3532 False 6525.0 6525 100.0000 1 3533 1 chr2B.!!$F1 3532
1 TraesCS2B01G022300 chr2B 10829580 10831329 1749 True 1314.0 1314 80.5110 290 2068 1 chr2B.!!$R2 1778
2 TraesCS2B01G022300 chr2B 10837778 10839165 1387 True 1291.0 1291 83.5700 290 1685 1 chr2B.!!$R3 1395
3 TraesCS2B01G022300 chr2B 10769985 10771336 1351 False 845.0 845 78.2800 360 1710 1 chr2B.!!$F2 1350
4 TraesCS2B01G022300 chr2B 10804070 10805667 1597 True 728.0 728 75.4150 1715 3305 1 chr2B.!!$R1 1590
5 TraesCS2B01G022300 chr2A 513492 516406 2914 False 1921.0 1921 78.9070 361 3299 1 chr2A.!!$F1 2938
6 TraesCS2B01G022300 chr2A 764054671 764056459 1788 True 1652.0 1652 83.5650 290 2065 1 chr2A.!!$R2 1775
7 TraesCS2B01G022300 chr2A 581227 584530 3303 True 1601.0 2189 84.1495 290 3523 2 chr2A.!!$R3 3233
8 TraesCS2B01G022300 chr2A 564547 565865 1318 True 883.0 883 79.0450 360 1683 1 chr2A.!!$R1 1323
9 TraesCS2B01G022300 chr7B 683328492 683330266 1774 True 1768.0 1768 84.8400 290 2049 1 chr7B.!!$R1 1759
10 TraesCS2B01G022300 chr7B 706083968 706086038 2070 True 1280.0 1280 78.2550 1250 3301 1 chr7B.!!$R2 2051
11 TraesCS2B01G022300 chr2D 475767 477570 1803 False 1696.0 1696 83.8570 275 2065 1 chr2D.!!$F3 1790
12 TraesCS2B01G022300 chr2D 1523869 1525480 1611 True 1417.0 1417 82.6560 378 2015 1 chr2D.!!$R1 1637
13 TraesCS2B01G022300 chr2D 395910 397253 1343 False 1153.0 1153 82.3620 316 1671 1 chr2D.!!$F1 1355
14 TraesCS2B01G022300 chr2D 634850005 634851427 1422 False 983.0 983 79.5030 290 1713 1 chr2D.!!$F5 1423
15 TraesCS2B01G022300 chr2D 513350 514526 1176 False 970.0 970 81.8100 290 1452 1 chr2D.!!$F4 1162
16 TraesCS2B01G022300 chr2D 691924 693275 1351 True 566.2 1050 91.7060 708 2942 2 chr2D.!!$R2 2234
17 TraesCS2B01G022300 chr3B 733446115 733447557 1442 True 1014.0 1014 79.6550 290 1714 1 chr3B.!!$R1 1424
18 TraesCS2B01G022300 chrUn 300262086 300263675 1589 False 809.0 809 76.5140 1715 3305 1 chrUn.!!$F1 1590

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
968 995 0.035439 AGAAATGCTGGGTACACGGG 60.035 55.000 5.98 0.0 0.00 5.28 F
1127 1160 1.304713 ACAAAGCATGGGAGGCTGG 60.305 57.895 0.00 0.0 41.66 4.85 F
2016 2125 0.836400 AGGTCCCATGTCTCCAACGT 60.836 55.000 0.00 0.0 0.00 3.99 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1996 2105 0.108138 CGTTGGAGACATGGGACCTC 60.108 60.0 0.00 0.0 42.32 3.85 R
2435 2564 0.179059 TGTCGAAGGCTGAAACTGCA 60.179 50.0 0.00 0.0 0.00 4.41 R
3314 3469 0.034896 AAGAGCGTTGGTGTACCTGG 59.965 55.0 2.32 0.0 36.82 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.991250 GGAATGTGGAAAGCTAGCAGA 58.009 47.619 18.83 0.00 0.00 4.26
21 22 3.549794 GGAATGTGGAAAGCTAGCAGAT 58.450 45.455 18.83 1.54 0.00 2.90
22 23 3.950395 GGAATGTGGAAAGCTAGCAGATT 59.050 43.478 18.83 8.83 0.00 2.40
23 24 5.126067 GGAATGTGGAAAGCTAGCAGATTA 58.874 41.667 18.83 0.00 0.00 1.75
24 25 5.767168 GGAATGTGGAAAGCTAGCAGATTAT 59.233 40.000 18.83 0.00 0.00 1.28
25 26 6.072783 GGAATGTGGAAAGCTAGCAGATTATC 60.073 42.308 18.83 5.30 0.00 1.75
26 27 5.620738 TGTGGAAAGCTAGCAGATTATCT 57.379 39.130 18.83 0.00 0.00 1.98
27 28 5.605534 TGTGGAAAGCTAGCAGATTATCTC 58.394 41.667 18.83 6.66 0.00 2.75
28 29 4.994217 GTGGAAAGCTAGCAGATTATCTCC 59.006 45.833 18.83 10.32 0.00 3.71
29 30 4.904251 TGGAAAGCTAGCAGATTATCTCCT 59.096 41.667 18.83 0.00 0.00 3.69
30 31 5.367937 TGGAAAGCTAGCAGATTATCTCCTT 59.632 40.000 18.83 0.00 0.00 3.36
31 32 5.700373 GGAAAGCTAGCAGATTATCTCCTTG 59.300 44.000 18.83 0.00 0.00 3.61
32 33 4.270245 AGCTAGCAGATTATCTCCTTGC 57.730 45.455 18.83 10.76 0.00 4.01
33 34 3.645212 AGCTAGCAGATTATCTCCTTGCA 59.355 43.478 18.61 0.00 0.00 4.08
34 35 3.745458 GCTAGCAGATTATCTCCTTGCAC 59.255 47.826 13.21 0.00 0.00 4.57
35 36 2.831333 AGCAGATTATCTCCTTGCACG 58.169 47.619 6.87 0.00 0.00 5.34
36 37 1.262683 GCAGATTATCTCCTTGCACGC 59.737 52.381 0.00 0.00 0.00 5.34
37 38 1.869767 CAGATTATCTCCTTGCACGCC 59.130 52.381 0.00 0.00 0.00 5.68
38 39 1.765314 AGATTATCTCCTTGCACGCCT 59.235 47.619 0.00 0.00 0.00 5.52
39 40 2.139118 GATTATCTCCTTGCACGCCTC 58.861 52.381 0.00 0.00 0.00 4.70
40 41 1.195115 TTATCTCCTTGCACGCCTCT 58.805 50.000 0.00 0.00 0.00 3.69
41 42 0.747255 TATCTCCTTGCACGCCTCTC 59.253 55.000 0.00 0.00 0.00 3.20
42 43 1.965754 ATCTCCTTGCACGCCTCTCC 61.966 60.000 0.00 0.00 0.00 3.71
43 44 2.604686 TCCTTGCACGCCTCTCCT 60.605 61.111 0.00 0.00 0.00 3.69
44 45 2.125350 CCTTGCACGCCTCTCCTC 60.125 66.667 0.00 0.00 0.00 3.71
45 46 2.125350 CTTGCACGCCTCTCCTCC 60.125 66.667 0.00 0.00 0.00 4.30
46 47 2.604686 TTGCACGCCTCTCCTCCT 60.605 61.111 0.00 0.00 0.00 3.69
47 48 2.570582 CTTGCACGCCTCTCCTCCTC 62.571 65.000 0.00 0.00 0.00 3.71
48 49 2.757917 GCACGCCTCTCCTCCTCT 60.758 66.667 0.00 0.00 0.00 3.69
49 50 2.781158 GCACGCCTCTCCTCCTCTC 61.781 68.421 0.00 0.00 0.00 3.20
50 51 1.077068 CACGCCTCTCCTCCTCTCT 60.077 63.158 0.00 0.00 0.00 3.10
51 52 0.181587 CACGCCTCTCCTCCTCTCTA 59.818 60.000 0.00 0.00 0.00 2.43
52 53 0.472471 ACGCCTCTCCTCCTCTCTAG 59.528 60.000 0.00 0.00 0.00 2.43
53 54 0.250727 CGCCTCTCCTCCTCTCTAGG 60.251 65.000 0.00 0.00 45.21 3.02
54 55 0.850784 GCCTCTCCTCCTCTCTAGGT 59.149 60.000 0.00 0.00 44.09 3.08
55 56 1.202891 GCCTCTCCTCCTCTCTAGGTC 60.203 61.905 0.00 0.00 44.09 3.85
56 57 1.423921 CCTCTCCTCCTCTCTAGGTCC 59.576 61.905 0.00 0.00 44.09 4.46
57 58 1.423921 CTCTCCTCCTCTCTAGGTCCC 59.576 61.905 0.00 0.00 44.09 4.46
58 59 1.227249 CTCCTCCTCTCTAGGTCCCA 58.773 60.000 0.00 0.00 44.09 4.37
59 60 1.786441 CTCCTCCTCTCTAGGTCCCAT 59.214 57.143 0.00 0.00 44.09 4.00
60 61 1.501170 TCCTCCTCTCTAGGTCCCATG 59.499 57.143 0.00 0.00 44.09 3.66
61 62 1.337118 CTCCTCTCTAGGTCCCATGC 58.663 60.000 0.00 0.00 44.09 4.06
62 63 0.937441 TCCTCTCTAGGTCCCATGCT 59.063 55.000 0.00 0.00 44.09 3.79
63 64 2.109128 CTCCTCTCTAGGTCCCATGCTA 59.891 54.545 0.00 0.00 44.09 3.49
64 65 2.158445 TCCTCTCTAGGTCCCATGCTAC 60.158 54.545 0.00 0.00 44.09 3.58
65 66 2.424957 CCTCTCTAGGTCCCATGCTACA 60.425 54.545 0.00 0.00 38.19 2.74
66 67 3.505386 CTCTCTAGGTCCCATGCTACAT 58.495 50.000 0.00 0.00 0.00 2.29
67 68 3.234353 TCTCTAGGTCCCATGCTACATG 58.766 50.000 0.48 0.48 0.00 3.21
68 69 1.694150 TCTAGGTCCCATGCTACATGC 59.306 52.381 1.97 0.00 43.25 4.06
69 70 0.764890 TAGGTCCCATGCTACATGCC 59.235 55.000 1.97 0.00 42.00 4.40
70 71 0.990282 AGGTCCCATGCTACATGCCT 60.990 55.000 1.97 1.37 42.00 4.75
71 72 0.106519 GGTCCCATGCTACATGCCTT 60.107 55.000 1.97 0.00 42.00 4.35
72 73 1.027357 GTCCCATGCTACATGCCTTG 58.973 55.000 1.97 0.00 42.00 3.61
73 74 0.752743 TCCCATGCTACATGCCTTGC 60.753 55.000 1.97 0.00 42.00 4.01
74 75 0.754217 CCCATGCTACATGCCTTGCT 60.754 55.000 1.97 0.00 42.00 3.91
75 76 0.384309 CCATGCTACATGCCTTGCTG 59.616 55.000 1.97 0.00 42.00 4.41
76 77 1.100510 CATGCTACATGCCTTGCTGT 58.899 50.000 0.00 0.00 42.00 4.40
77 78 1.475280 CATGCTACATGCCTTGCTGTT 59.525 47.619 0.00 0.00 42.00 3.16
78 79 2.488204 TGCTACATGCCTTGCTGTTA 57.512 45.000 0.00 0.00 42.00 2.41
79 80 2.358957 TGCTACATGCCTTGCTGTTAG 58.641 47.619 0.00 0.00 42.00 2.34
80 81 1.064654 GCTACATGCCTTGCTGTTAGC 59.935 52.381 0.00 0.00 37.46 3.09
81 82 1.672881 CTACATGCCTTGCTGTTAGCC 59.327 52.381 0.00 0.00 41.51 3.93
82 83 0.038744 ACATGCCTTGCTGTTAGCCT 59.961 50.000 0.00 0.00 41.51 4.58
83 84 0.454600 CATGCCTTGCTGTTAGCCTG 59.545 55.000 0.00 0.00 41.51 4.85
84 85 0.038744 ATGCCTTGCTGTTAGCCTGT 59.961 50.000 0.00 0.00 41.51 4.00
85 86 0.690192 TGCCTTGCTGTTAGCCTGTA 59.310 50.000 0.00 0.00 41.51 2.74
86 87 1.281867 TGCCTTGCTGTTAGCCTGTAT 59.718 47.619 0.00 0.00 41.51 2.29
87 88 2.503765 TGCCTTGCTGTTAGCCTGTATA 59.496 45.455 0.00 0.00 41.51 1.47
88 89 3.054728 TGCCTTGCTGTTAGCCTGTATAA 60.055 43.478 0.00 0.00 41.51 0.98
89 90 3.561725 GCCTTGCTGTTAGCCTGTATAAG 59.438 47.826 0.00 0.00 41.51 1.73
90 91 4.770795 CCTTGCTGTTAGCCTGTATAAGT 58.229 43.478 0.00 0.00 41.51 2.24
91 92 4.572389 CCTTGCTGTTAGCCTGTATAAGTG 59.428 45.833 0.00 0.00 41.51 3.16
92 93 3.531538 TGCTGTTAGCCTGTATAAGTGC 58.468 45.455 0.00 0.00 41.51 4.40
93 94 2.872858 GCTGTTAGCCTGTATAAGTGCC 59.127 50.000 0.00 0.00 34.48 5.01
94 95 3.123804 CTGTTAGCCTGTATAAGTGCCG 58.876 50.000 0.00 0.00 0.00 5.69
95 96 2.159014 TGTTAGCCTGTATAAGTGCCGG 60.159 50.000 0.00 0.00 0.00 6.13
96 97 0.391597 TAGCCTGTATAAGTGCCGGC 59.608 55.000 22.73 22.73 39.91 6.13
97 98 1.892391 GCCTGTATAAGTGCCGGCC 60.892 63.158 26.77 15.80 34.95 6.13
98 99 1.524961 CCTGTATAAGTGCCGGCCA 59.475 57.895 26.77 11.81 0.00 5.36
99 100 0.108585 CCTGTATAAGTGCCGGCCAT 59.891 55.000 26.77 14.23 0.00 4.40
100 101 1.229428 CTGTATAAGTGCCGGCCATG 58.771 55.000 26.77 3.07 0.00 3.66
101 102 0.817634 TGTATAAGTGCCGGCCATGC 60.818 55.000 26.77 15.31 0.00 4.06
102 103 1.228124 TATAAGTGCCGGCCATGCC 60.228 57.895 26.77 6.51 46.75 4.40
111 112 4.016838 GGCCATGCCTGCAGTTTA 57.983 55.556 13.81 0.00 46.69 2.01
112 113 2.275880 GGCCATGCCTGCAGTTTAA 58.724 52.632 13.81 0.00 46.69 1.52
113 114 0.826062 GGCCATGCCTGCAGTTTAAT 59.174 50.000 13.81 0.00 46.69 1.40
114 115 1.207811 GGCCATGCCTGCAGTTTAATT 59.792 47.619 13.81 0.00 46.69 1.40
115 116 2.430332 GGCCATGCCTGCAGTTTAATTA 59.570 45.455 13.81 0.00 46.69 1.40
116 117 3.118811 GGCCATGCCTGCAGTTTAATTAA 60.119 43.478 13.81 0.00 46.69 1.40
117 118 4.443315 GGCCATGCCTGCAGTTTAATTAAT 60.443 41.667 13.81 0.00 46.69 1.40
118 119 5.118286 GCCATGCCTGCAGTTTAATTAATT 58.882 37.500 13.81 5.89 0.00 1.40
119 120 6.279882 GCCATGCCTGCAGTTTAATTAATTA 58.720 36.000 13.81 3.71 0.00 1.40
120 121 6.421801 GCCATGCCTGCAGTTTAATTAATTAG 59.578 38.462 13.81 0.00 0.00 1.73
121 122 7.491682 CCATGCCTGCAGTTTAATTAATTAGT 58.508 34.615 13.81 0.00 0.00 2.24
122 123 7.649306 CCATGCCTGCAGTTTAATTAATTAGTC 59.351 37.037 13.81 5.98 0.00 2.59
123 124 7.938140 TGCCTGCAGTTTAATTAATTAGTCT 57.062 32.000 13.81 7.85 0.00 3.24
124 125 8.348285 TGCCTGCAGTTTAATTAATTAGTCTT 57.652 30.769 13.81 0.00 0.00 3.01
125 126 8.243426 TGCCTGCAGTTTAATTAATTAGTCTTG 58.757 33.333 13.81 7.17 0.00 3.02
126 127 8.458843 GCCTGCAGTTTAATTAATTAGTCTTGA 58.541 33.333 13.81 0.00 0.00 3.02
163 164 4.379339 AAAAAGTAAGTGCGCCTTTTGA 57.621 36.364 18.00 0.20 38.17 2.69
164 165 4.379339 AAAAGTAAGTGCGCCTTTTGAA 57.621 36.364 16.99 0.00 37.11 2.69
165 166 4.584327 AAAGTAAGTGCGCCTTTTGAAT 57.416 36.364 14.87 0.00 34.46 2.57
166 167 3.559238 AGTAAGTGCGCCTTTTGAATG 57.441 42.857 14.87 0.00 34.46 2.67
167 168 2.884639 AGTAAGTGCGCCTTTTGAATGT 59.115 40.909 14.87 0.00 34.46 2.71
168 169 4.069304 AGTAAGTGCGCCTTTTGAATGTA 58.931 39.130 14.87 0.00 34.46 2.29
169 170 2.989422 AGTGCGCCTTTTGAATGTAC 57.011 45.000 4.18 0.00 0.00 2.90
170 171 2.504367 AGTGCGCCTTTTGAATGTACT 58.496 42.857 4.18 0.00 0.00 2.73
171 172 3.670625 AGTGCGCCTTTTGAATGTACTA 58.329 40.909 4.18 0.00 0.00 1.82
172 173 3.435671 AGTGCGCCTTTTGAATGTACTAC 59.564 43.478 4.18 0.00 0.00 2.73
173 174 2.745281 TGCGCCTTTTGAATGTACTACC 59.255 45.455 4.18 0.00 0.00 3.18
174 175 3.007635 GCGCCTTTTGAATGTACTACCT 58.992 45.455 0.00 0.00 0.00 3.08
175 176 3.439129 GCGCCTTTTGAATGTACTACCTT 59.561 43.478 0.00 0.00 0.00 3.50
176 177 4.436986 GCGCCTTTTGAATGTACTACCTTC 60.437 45.833 0.00 0.00 0.00 3.46
177 178 4.201685 CGCCTTTTGAATGTACTACCTTCG 60.202 45.833 0.00 0.00 0.00 3.79
178 179 4.694037 GCCTTTTGAATGTACTACCTTCGT 59.306 41.667 0.00 0.00 0.00 3.85
179 180 5.163884 GCCTTTTGAATGTACTACCTTCGTC 60.164 44.000 0.00 0.00 0.00 4.20
180 181 5.350640 CCTTTTGAATGTACTACCTTCGTCC 59.649 44.000 0.00 0.00 0.00 4.79
181 182 3.770263 TGAATGTACTACCTTCGTCCG 57.230 47.619 0.00 0.00 0.00 4.79
182 183 2.424601 TGAATGTACTACCTTCGTCCGG 59.575 50.000 0.00 0.00 0.00 5.14
183 184 0.743097 ATGTACTACCTTCGTCCGGC 59.257 55.000 0.00 0.00 0.00 6.13
184 185 1.063166 GTACTACCTTCGTCCGGCG 59.937 63.158 11.37 11.37 43.01 6.46
192 193 3.594568 TCGTCCGGCGATACTTGT 58.405 55.556 9.30 0.00 45.68 3.16
193 194 1.430632 TCGTCCGGCGATACTTGTC 59.569 57.895 9.30 0.00 45.68 3.18
194 195 1.937846 CGTCCGGCGATACTTGTCG 60.938 63.158 9.30 0.00 44.77 4.35
204 205 4.840401 CGATACTTGTCGCTCAAATGAA 57.160 40.909 0.00 0.00 35.48 2.57
205 206 5.395325 CGATACTTGTCGCTCAAATGAAT 57.605 39.130 0.00 0.00 35.48 2.57
206 207 5.193216 CGATACTTGTCGCTCAAATGAATG 58.807 41.667 0.00 0.00 35.48 2.67
207 208 5.220472 CGATACTTGTCGCTCAAATGAATGT 60.220 40.000 0.00 0.00 35.48 2.71
208 209 6.019881 CGATACTTGTCGCTCAAATGAATGTA 60.020 38.462 0.00 0.00 35.48 2.29
209 210 7.306807 CGATACTTGTCGCTCAAATGAATGTAT 60.307 37.037 0.00 0.00 35.48 2.29
210 211 6.111768 ACTTGTCGCTCAAATGAATGTATC 57.888 37.500 0.00 0.00 35.48 2.24
211 212 5.643348 ACTTGTCGCTCAAATGAATGTATCA 59.357 36.000 0.00 0.00 35.79 2.15
212 213 6.149308 ACTTGTCGCTCAAATGAATGTATCAA 59.851 34.615 0.00 0.00 35.34 2.57
213 214 6.110543 TGTCGCTCAAATGAATGTATCAAG 57.889 37.500 0.00 0.00 42.54 3.02
214 215 5.874261 TGTCGCTCAAATGAATGTATCAAGA 59.126 36.000 0.00 0.00 42.54 3.02
215 216 6.183360 TGTCGCTCAAATGAATGTATCAAGAC 60.183 38.462 0.00 0.00 42.54 3.01
216 217 5.005682 TCGCTCAAATGAATGTATCAAGACG 59.994 40.000 0.00 0.00 42.54 4.18
217 218 5.220472 CGCTCAAATGAATGTATCAAGACGT 60.220 40.000 0.00 0.00 42.54 4.34
218 219 6.019881 CGCTCAAATGAATGTATCAAGACGTA 60.020 38.462 0.00 0.00 42.54 3.57
219 220 7.306807 CGCTCAAATGAATGTATCAAGACGTAT 60.307 37.037 0.00 0.00 42.54 3.06
220 221 8.338259 GCTCAAATGAATGTATCAAGACGTATT 58.662 33.333 0.00 0.00 42.54 1.89
223 224 9.986833 CAAATGAATGTATCAAGACGTATTTCA 57.013 29.630 0.00 0.00 42.54 2.69
225 226 8.948631 ATGAATGTATCAAGACGTATTTCAGT 57.051 30.769 0.00 0.00 42.54 3.41
227 228 9.297586 TGAATGTATCAAGACGTATTTCAGTAC 57.702 33.333 0.00 0.00 34.30 2.73
228 229 9.517609 GAATGTATCAAGACGTATTTCAGTACT 57.482 33.333 0.00 0.00 0.00 2.73
231 232 9.387257 TGTATCAAGACGTATTTCAGTACTAGA 57.613 33.333 0.00 0.00 0.00 2.43
235 236 9.387257 TCAAGACGTATTTCAGTACTAGATACA 57.613 33.333 16.37 1.50 36.09 2.29
246 247 8.997621 TCAGTACTAGATACATTTGTTTGACC 57.002 34.615 0.00 0.00 36.09 4.02
247 248 7.758076 TCAGTACTAGATACATTTGTTTGACCG 59.242 37.037 0.00 0.00 36.09 4.79
248 249 7.758076 CAGTACTAGATACATTTGTTTGACCGA 59.242 37.037 0.00 0.00 36.09 4.69
249 250 6.963049 ACTAGATACATTTGTTTGACCGAC 57.037 37.500 0.00 0.00 0.00 4.79
250 251 6.460781 ACTAGATACATTTGTTTGACCGACA 58.539 36.000 0.00 0.00 0.00 4.35
251 252 6.932400 ACTAGATACATTTGTTTGACCGACAA 59.068 34.615 0.00 0.00 35.36 3.18
252 253 6.241207 AGATACATTTGTTTGACCGACAAG 57.759 37.500 0.00 0.00 39.77 3.16
253 254 5.763204 AGATACATTTGTTTGACCGACAAGT 59.237 36.000 0.00 0.00 39.77 3.16
254 255 6.932400 AGATACATTTGTTTGACCGACAAGTA 59.068 34.615 0.00 0.00 39.77 2.24
255 256 7.606456 AGATACATTTGTTTGACCGACAAGTAT 59.394 33.333 0.00 0.00 39.77 2.12
256 257 6.385649 ACATTTGTTTGACCGACAAGTATT 57.614 33.333 0.00 0.00 39.77 1.89
257 258 6.801575 ACATTTGTTTGACCGACAAGTATTT 58.198 32.000 0.00 0.00 39.77 1.40
258 259 6.915843 ACATTTGTTTGACCGACAAGTATTTC 59.084 34.615 0.00 0.00 39.77 2.17
259 260 6.687081 TTTGTTTGACCGACAAGTATTTCT 57.313 33.333 0.00 0.00 39.77 2.52
260 261 7.789273 TTTGTTTGACCGACAAGTATTTCTA 57.211 32.000 0.00 0.00 39.77 2.10
261 262 7.416154 TTGTTTGACCGACAAGTATTTCTAG 57.584 36.000 0.00 0.00 39.77 2.43
262 263 6.751157 TGTTTGACCGACAAGTATTTCTAGA 58.249 36.000 0.00 0.00 39.77 2.43
263 264 6.643770 TGTTTGACCGACAAGTATTTCTAGAC 59.356 38.462 0.00 0.00 39.77 2.59
264 265 4.978186 TGACCGACAAGTATTTCTAGACG 58.022 43.478 0.00 0.00 0.00 4.18
265 266 4.142534 TGACCGACAAGTATTTCTAGACGG 60.143 45.833 10.16 10.16 39.16 4.79
266 267 4.012374 ACCGACAAGTATTTCTAGACGGA 58.988 43.478 16.67 0.00 37.89 4.69
267 268 4.096081 ACCGACAAGTATTTCTAGACGGAG 59.904 45.833 16.67 0.00 37.89 4.63
268 269 4.334759 CCGACAAGTATTTCTAGACGGAGA 59.665 45.833 6.77 0.00 37.25 3.71
269 270 5.503498 CGACAAGTATTTCTAGACGGAGAG 58.497 45.833 0.00 0.00 0.00 3.20
270 271 5.293814 CGACAAGTATTTCTAGACGGAGAGA 59.706 44.000 0.00 0.00 0.00 3.10
271 272 6.510478 CGACAAGTATTTCTAGACGGAGAGAG 60.510 46.154 0.00 0.00 0.00 3.20
272 273 6.181908 ACAAGTATTTCTAGACGGAGAGAGT 58.818 40.000 0.00 0.00 0.00 3.24
273 274 6.094325 ACAAGTATTTCTAGACGGAGAGAGTG 59.906 42.308 0.00 0.00 0.00 3.51
282 283 4.794334 AGACGGAGAGAGTGGTATGTTAT 58.206 43.478 0.00 0.00 0.00 1.89
285 286 7.005296 AGACGGAGAGAGTGGTATGTTATTAT 58.995 38.462 0.00 0.00 0.00 1.28
286 287 8.162085 AGACGGAGAGAGTGGTATGTTATTATA 58.838 37.037 0.00 0.00 0.00 0.98
287 288 8.701908 ACGGAGAGAGTGGTATGTTATTATAA 57.298 34.615 0.00 0.00 0.00 0.98
288 289 9.310449 ACGGAGAGAGTGGTATGTTATTATAAT 57.690 33.333 2.97 2.97 0.00 1.28
330 338 5.006746 CGACCTCAACTAATTGCTATCAACC 59.993 44.000 0.00 0.00 35.63 3.77
346 354 4.916983 TCAACCAATGCAGTATATTGCC 57.083 40.909 16.65 0.99 43.43 4.52
347 361 4.276642 TCAACCAATGCAGTATATTGCCA 58.723 39.130 16.65 6.34 43.43 4.92
349 363 5.363292 TCAACCAATGCAGTATATTGCCATT 59.637 36.000 16.65 12.85 43.43 3.16
358 372 3.876914 AGTATATTGCCATTGACACCGTG 59.123 43.478 0.00 0.00 0.00 4.94
367 381 0.468226 TTGACACCGTGGAAGAAGCT 59.532 50.000 3.03 0.00 0.00 3.74
387 401 3.316308 GCTGTGCGAATGATAATCCCTTT 59.684 43.478 0.00 0.00 0.00 3.11
391 405 5.296780 TGTGCGAATGATAATCCCTTTTCTC 59.703 40.000 0.00 0.00 0.00 2.87
431 445 3.193267 TGCACACAAGGCCATCTATTTTC 59.807 43.478 5.01 0.00 0.00 2.29
445 459 5.128033 TCTATTTTCATGGATGGCAAGGA 57.872 39.130 0.00 0.00 0.00 3.36
493 507 0.321298 TAGCTGAAAACACTCCGCCC 60.321 55.000 0.00 0.00 0.00 6.13
551 565 2.341846 TTGCTCGAGGTGGAAAAGTT 57.658 45.000 15.58 0.00 0.00 2.66
617 631 5.048713 CCTCAGCGGGTAATGGATATTTTTC 60.049 44.000 0.00 0.00 0.00 2.29
621 635 5.833131 AGCGGGTAATGGATATTTTTCACAT 59.167 36.000 0.00 0.00 0.00 3.21
634 648 9.234384 GATATTTTTCACATGCAAGATGAAGAG 57.766 33.333 9.69 0.00 34.04 2.85
685 699 4.340666 TCCAGAGCTGAGATACAAGATGTC 59.659 45.833 0.00 0.00 0.00 3.06
690 704 2.959030 CTGAGATACAAGATGTCGGGGA 59.041 50.000 0.00 0.00 0.00 4.81
694 708 4.227197 AGATACAAGATGTCGGGGAAGAT 58.773 43.478 0.00 0.00 0.00 2.40
772 786 6.250819 CGACAACATAATTGACCTGAATGAC 58.749 40.000 0.00 0.00 0.00 3.06
796 810 8.352808 ACTTTGGTATTCCCCAACCTATTATA 57.647 34.615 0.00 0.00 44.03 0.98
807 821 5.479306 CCAACCTATTATAGATCGGTGGTG 58.521 45.833 0.03 0.00 0.00 4.17
865 885 1.743394 CGGCTCAACCCAAGAATTACC 59.257 52.381 0.00 0.00 33.26 2.85
887 907 4.202253 CCGAGAAGGTGGATGATTCACATA 60.202 45.833 6.15 0.00 35.72 2.29
892 912 9.342308 GAGAAGGTGGATGATTCACATATTTTA 57.658 33.333 6.15 0.00 39.56 1.52
937 963 4.338118 CACGGGTGGAATTATTTGCTACAT 59.662 41.667 0.00 0.00 0.00 2.29
968 995 0.035439 AGAAATGCTGGGTACACGGG 60.035 55.000 5.98 0.00 0.00 5.28
973 1000 1.863325 TGCTGGGTACACGGGTAATA 58.137 50.000 5.98 0.00 0.00 0.98
976 1003 3.966006 TGCTGGGTACACGGGTAATATTA 59.034 43.478 5.98 0.00 0.00 0.98
977 1004 4.594062 TGCTGGGTACACGGGTAATATTAT 59.406 41.667 5.98 0.00 0.00 1.28
981 1008 7.319052 TGGGTACACGGGTAATATTATTGAT 57.681 36.000 0.00 0.00 0.00 2.57
1038 1068 3.463048 AATTCTCAGGGAGGCAATGTT 57.537 42.857 0.00 0.00 0.00 2.71
1039 1069 2.205022 TTCTCAGGGAGGCAATGTTG 57.795 50.000 0.00 0.00 0.00 3.33
1046 1076 1.620822 GGAGGCAATGTTGTGGACTT 58.379 50.000 0.00 0.00 0.00 3.01
1127 1160 1.304713 ACAAAGCATGGGAGGCTGG 60.305 57.895 0.00 0.00 41.66 4.85
1211 1244 3.827302 GGTCAGAAACTAGTGACTCCTCA 59.173 47.826 10.13 0.00 42.37 3.86
1277 1310 3.875134 GAGTCAACGTCCTTTTTCCTTGA 59.125 43.478 0.00 0.00 0.00 3.02
1392 1425 2.294512 CTGCACCTTCAGTTTTTCCTCC 59.705 50.000 0.00 0.00 0.00 4.30
1474 1510 6.479001 TCAACGACTAGAAGAAGACAAAAAGG 59.521 38.462 0.00 0.00 0.00 3.11
1481 1517 9.713713 ACTAGAAGAAGACAAAAAGGAAGATAC 57.286 33.333 0.00 0.00 0.00 2.24
1534 1571 7.019656 TGGGTGATAGACATATGCAATACAT 57.980 36.000 1.58 0.00 43.18 2.29
1556 1593 4.519540 ATTGGGTTTTTCCTTCATCACG 57.480 40.909 0.00 0.00 36.25 4.35
1564 1601 6.256757 GGTTTTTCCTTCATCACGAGAGATAG 59.743 42.308 0.00 0.00 0.00 2.08
1630 1667 4.378774 TGGAAGGTTTTTGCACATCAATG 58.621 39.130 0.00 0.00 34.12 2.82
1674 1711 5.000012 ACCTACTCAAGCTTCGAGTAATG 58.000 43.478 25.41 22.33 43.52 1.90
1742 1842 4.518970 GCCCAACTTGTCAAGATCAACTAA 59.481 41.667 19.53 0.00 0.00 2.24
1750 1850 5.551233 TGTCAAGATCAACTAACCTCAAGG 58.449 41.667 0.00 0.00 42.17 3.61
1762 1862 6.254522 ACTAACCTCAAGGCTCTAGTTCTAA 58.745 40.000 0.00 0.00 39.32 2.10
1771 1871 6.128138 AGGCTCTAGTTCTAAATGGTTGTT 57.872 37.500 0.00 0.00 0.00 2.83
1791 1897 5.738909 TGTTTTGGTTTGGAACATGTTGAT 58.261 33.333 17.58 0.00 39.30 2.57
1842 1951 8.948401 TCAGCTTAGATATAAGACCAAGAGAT 57.052 34.615 11.29 0.00 0.00 2.75
1987 2096 3.185246 AGACACTTGACCTCACAACTG 57.815 47.619 0.00 0.00 0.00 3.16
2016 2125 0.836400 AGGTCCCATGTCTCCAACGT 60.836 55.000 0.00 0.00 0.00 3.99
2023 2132 2.612721 CCATGTCTCCAACGTGTCATGA 60.613 50.000 10.79 0.00 42.40 3.07
2127 2239 5.300539 TCGAGGAGAAGGTATCAGAAGAATG 59.699 44.000 0.00 0.00 0.00 2.67
2221 2333 8.531146 TCATTCAGATATTGACACAGACAAGTA 58.469 33.333 0.00 0.00 34.94 2.24
2257 2369 8.573035 TGTTTTGGAGTATTGAAACCACTAATC 58.427 33.333 0.00 0.00 32.49 1.75
2347 2462 2.726896 TGTGGGAATATATTGGGGCCAT 59.273 45.455 4.39 0.00 0.00 4.40
2435 2564 3.912496 TCATGGCTACAATAGTGCAGT 57.088 42.857 0.00 0.00 0.00 4.40
2483 2612 6.078456 TGTGGAGATTGGTGAAGGAATTAT 57.922 37.500 0.00 0.00 0.00 1.28
2515 2644 0.868406 GGAGAGCACACAAGGAAACG 59.132 55.000 0.00 0.00 0.00 3.60
2744 2874 0.779997 ACCTTTGGGTGGCTGATCTT 59.220 50.000 0.00 0.00 45.43 2.40
2746 2876 1.272092 CCTTTGGGTGGCTGATCTTCA 60.272 52.381 0.00 0.00 0.00 3.02
2783 2913 5.221925 TGTTTGGAGCAGAGGAAATACTCTT 60.222 40.000 0.00 0.00 45.21 2.85
2787 2917 6.432581 TGGAGCAGAGGAAATACTCTTAGTA 58.567 40.000 0.00 0.00 45.21 1.82
2791 2921 6.773685 AGCAGAGGAAATACTCTTAGTATCGT 59.226 38.462 0.00 0.00 45.21 3.73
2795 2925 7.778853 AGAGGAAATACTCTTAGTATCGTGGAA 59.221 37.037 0.28 0.00 45.21 3.53
2818 2948 3.432782 ACTATTCCTTCGCGAAACTACG 58.567 45.455 23.54 10.49 0.00 3.51
2825 2955 0.108992 TCGCGAAACTACGGAGCATT 60.109 50.000 6.20 0.00 0.00 3.56
2831 2961 3.428452 CGAAACTACGGAGCATTCACCTA 60.428 47.826 12.71 0.00 0.00 3.08
2868 2998 3.120442 GCTCAAATTTGTGCTTCCATTGC 60.120 43.478 28.98 11.76 42.56 3.56
2915 3045 1.355720 CCCAACTTGGAGACCCTTCAT 59.644 52.381 9.61 0.00 40.96 2.57
2983 3113 6.118170 CAGAGTTCCTGACAACAATATCCAT 58.882 40.000 0.00 0.00 45.78 3.41
2988 3118 3.809832 CCTGACAACAATATCCATCGACC 59.190 47.826 0.00 0.00 0.00 4.79
3000 3151 2.823114 TCGACCACCGAAAAGGCA 59.177 55.556 0.00 0.00 45.43 4.75
3002 3153 0.953471 TCGACCACCGAAAAGGCATG 60.953 55.000 0.00 0.00 45.43 4.06
3098 3253 1.813513 ATGCTCCCAAACTTGAGACG 58.186 50.000 0.00 0.00 0.00 4.18
3099 3254 0.250295 TGCTCCCAAACTTGAGACGG 60.250 55.000 0.00 0.00 0.00 4.79
3101 3256 1.001633 GCTCCCAAACTTGAGACGGTA 59.998 52.381 0.00 0.00 0.00 4.02
3129 3284 3.083997 GATGCTGGGGTCTCCGGT 61.084 66.667 0.00 0.00 43.94 5.28
3191 3346 0.035439 GCGAGAAGGATTGGTGGGAA 60.035 55.000 0.00 0.00 0.00 3.97
3194 3349 3.356290 CGAGAAGGATTGGTGGGAAAAT 58.644 45.455 0.00 0.00 0.00 1.82
3201 3356 1.923356 TTGGTGGGAAAATCTGGAGC 58.077 50.000 0.00 0.00 0.00 4.70
3229 3384 4.864334 GGAGGCCAGCCATGACCG 62.864 72.222 12.03 0.00 38.92 4.79
3314 3469 1.888512 TGGTGAACTGACCGTACTACC 59.111 52.381 0.00 0.00 39.07 3.18
3324 3479 1.106285 CCGTACTACCCAGGTACACC 58.894 60.000 0.00 0.00 39.36 4.16
3325 3480 1.616725 CCGTACTACCCAGGTACACCA 60.617 57.143 0.38 0.00 39.36 4.17
3452 3611 4.100981 GCAGAGCAGCGAAGTAGG 57.899 61.111 0.00 0.00 0.00 3.18
3453 3612 1.520342 GCAGAGCAGCGAAGTAGGG 60.520 63.158 0.00 0.00 0.00 3.53
3454 3613 1.893786 CAGAGCAGCGAAGTAGGGT 59.106 57.895 0.00 0.00 0.00 4.34
3455 3614 1.103803 CAGAGCAGCGAAGTAGGGTA 58.896 55.000 0.00 0.00 0.00 3.69
3458 3617 2.362717 AGAGCAGCGAAGTAGGGTAATC 59.637 50.000 0.00 0.00 0.00 1.75
3460 3619 1.138266 GCAGCGAAGTAGGGTAATCCA 59.862 52.381 0.00 0.00 38.24 3.41
3461 3620 2.224305 GCAGCGAAGTAGGGTAATCCAT 60.224 50.000 0.00 0.00 38.24 3.41
3469 3628 6.294065 CGAAGTAGGGTAATCCATACACTCTC 60.294 46.154 10.80 2.75 45.38 3.20
3474 3633 6.864421 AGGGTAATCCATACACTCTCTCATA 58.136 40.000 0.00 0.00 45.38 2.15
3500 3659 0.530744 TTGGACGACCCATTCTCTCG 59.469 55.000 0.34 0.00 46.10 4.04
3514 3673 0.041663 CTCTCGATCGACTCCGCTTC 60.042 60.000 15.15 0.00 35.37 3.86
3523 3682 3.194861 TCGACTCCGCTTCCATTAAATG 58.805 45.455 0.00 0.00 35.37 2.32
3524 3683 3.987683 TCGACTCCGCTTCCATTAAATGG 60.988 47.826 0.00 0.00 42.96 3.16
3525 3684 6.429782 TCGACTCCGCTTCCATTAAATGGT 62.430 45.833 0.00 0.00 42.54 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.991250 TCTGCTAGCTTTCCACATTCC 58.009 47.619 17.23 0.00 0.00 3.01
1 2 6.709846 AGATAATCTGCTAGCTTTCCACATTC 59.290 38.462 17.23 2.58 0.00 2.67
2 3 6.599445 AGATAATCTGCTAGCTTTCCACATT 58.401 36.000 17.23 6.03 0.00 2.71
3 4 6.185114 AGATAATCTGCTAGCTTTCCACAT 57.815 37.500 17.23 0.60 0.00 3.21
4 5 5.453903 GGAGATAATCTGCTAGCTTTCCACA 60.454 44.000 17.23 0.00 31.63 4.17
5 6 4.994217 GGAGATAATCTGCTAGCTTTCCAC 59.006 45.833 17.23 2.54 31.63 4.02
6 7 4.904251 AGGAGATAATCTGCTAGCTTTCCA 59.096 41.667 17.23 0.00 43.62 3.53
7 8 5.482163 AGGAGATAATCTGCTAGCTTTCC 57.518 43.478 17.23 8.46 43.62 3.13
8 9 5.179182 GCAAGGAGATAATCTGCTAGCTTTC 59.821 44.000 17.23 0.16 44.73 2.62
9 10 5.062528 GCAAGGAGATAATCTGCTAGCTTT 58.937 41.667 17.23 9.53 44.73 3.51
10 11 4.102210 TGCAAGGAGATAATCTGCTAGCTT 59.898 41.667 17.23 4.51 44.73 3.74
11 12 3.645212 TGCAAGGAGATAATCTGCTAGCT 59.355 43.478 17.23 0.00 44.73 3.32
12 13 3.745458 GTGCAAGGAGATAATCTGCTAGC 59.255 47.826 8.10 8.10 44.73 3.42
13 14 3.986572 CGTGCAAGGAGATAATCTGCTAG 59.013 47.826 0.00 0.00 44.73 3.42
14 15 3.800261 GCGTGCAAGGAGATAATCTGCTA 60.800 47.826 0.79 0.00 44.73 3.49
16 17 1.262683 GCGTGCAAGGAGATAATCTGC 59.737 52.381 0.79 0.00 34.82 4.26
17 18 1.869767 GGCGTGCAAGGAGATAATCTG 59.130 52.381 0.79 0.00 0.00 2.90
18 19 1.765314 AGGCGTGCAAGGAGATAATCT 59.235 47.619 0.79 0.00 0.00 2.40
19 20 2.139118 GAGGCGTGCAAGGAGATAATC 58.861 52.381 0.79 0.00 0.00 1.75
20 21 1.765314 AGAGGCGTGCAAGGAGATAAT 59.235 47.619 0.79 0.00 0.00 1.28
21 22 1.137086 GAGAGGCGTGCAAGGAGATAA 59.863 52.381 0.79 0.00 0.00 1.75
22 23 0.747255 GAGAGGCGTGCAAGGAGATA 59.253 55.000 0.79 0.00 0.00 1.98
23 24 1.519719 GAGAGGCGTGCAAGGAGAT 59.480 57.895 0.79 0.00 0.00 2.75
24 25 2.650116 GGAGAGGCGTGCAAGGAGA 61.650 63.158 0.79 0.00 0.00 3.71
25 26 2.125350 GGAGAGGCGTGCAAGGAG 60.125 66.667 0.79 0.00 0.00 3.69
26 27 2.604686 AGGAGAGGCGTGCAAGGA 60.605 61.111 0.79 0.00 0.00 3.36
27 28 2.125350 GAGGAGAGGCGTGCAAGG 60.125 66.667 0.79 0.00 0.00 3.61
28 29 2.125350 GGAGGAGAGGCGTGCAAG 60.125 66.667 0.00 0.00 0.00 4.01
29 30 2.604686 AGGAGGAGAGGCGTGCAA 60.605 61.111 0.00 0.00 0.00 4.08
30 31 3.071206 GAGGAGGAGAGGCGTGCA 61.071 66.667 0.00 0.00 0.00 4.57
31 32 2.757917 AGAGGAGGAGAGGCGTGC 60.758 66.667 0.00 0.00 0.00 5.34
32 33 0.181587 TAGAGAGGAGGAGAGGCGTG 59.818 60.000 0.00 0.00 0.00 5.34
33 34 0.472471 CTAGAGAGGAGGAGAGGCGT 59.528 60.000 0.00 0.00 0.00 5.68
34 35 3.322514 CTAGAGAGGAGGAGAGGCG 57.677 63.158 0.00 0.00 0.00 5.52
45 46 2.950781 TGTAGCATGGGACCTAGAGAG 58.049 52.381 0.00 0.00 0.00 3.20
46 47 3.234353 CATGTAGCATGGGACCTAGAGA 58.766 50.000 0.00 0.00 0.00 3.10
47 48 2.289320 GCATGTAGCATGGGACCTAGAG 60.289 54.545 10.59 0.00 44.79 2.43
48 49 1.694150 GCATGTAGCATGGGACCTAGA 59.306 52.381 10.59 0.00 44.79 2.43
49 50 2.175878 GCATGTAGCATGGGACCTAG 57.824 55.000 10.59 0.00 44.79 3.02
57 58 6.786793 GCTAACAGCAAGGCATGTAGCATG 62.787 50.000 4.87 4.87 43.06 4.06
58 59 4.795080 GCTAACAGCAAGGCATGTAGCAT 61.795 47.826 5.52 0.00 43.06 3.79
59 60 3.515717 GCTAACAGCAAGGCATGTAGCA 61.516 50.000 5.52 0.00 43.06 3.49
60 61 1.064654 GCTAACAGCAAGGCATGTAGC 59.935 52.381 0.00 0.00 41.89 3.58
61 62 1.672881 GGCTAACAGCAAGGCATGTAG 59.327 52.381 0.00 0.00 44.75 2.74
62 63 1.281867 AGGCTAACAGCAAGGCATGTA 59.718 47.619 0.00 0.00 44.75 2.29
63 64 0.038744 AGGCTAACAGCAAGGCATGT 59.961 50.000 0.00 0.00 44.75 3.21
64 65 0.454600 CAGGCTAACAGCAAGGCATG 59.545 55.000 0.00 0.00 44.75 4.06
65 66 0.038744 ACAGGCTAACAGCAAGGCAT 59.961 50.000 0.00 0.00 44.75 4.40
66 67 0.690192 TACAGGCTAACAGCAAGGCA 59.310 50.000 0.00 0.00 44.75 4.75
67 68 2.044123 ATACAGGCTAACAGCAAGGC 57.956 50.000 0.00 0.00 44.75 4.35
68 69 4.572389 CACTTATACAGGCTAACAGCAAGG 59.428 45.833 0.00 0.00 44.75 3.61
69 70 4.034510 GCACTTATACAGGCTAACAGCAAG 59.965 45.833 0.00 0.00 44.75 4.01
70 71 3.938963 GCACTTATACAGGCTAACAGCAA 59.061 43.478 0.00 0.00 44.75 3.91
71 72 3.531538 GCACTTATACAGGCTAACAGCA 58.468 45.455 0.00 0.00 44.75 4.41
72 73 2.872858 GGCACTTATACAGGCTAACAGC 59.127 50.000 0.00 0.00 41.46 4.40
73 74 3.123804 CGGCACTTATACAGGCTAACAG 58.876 50.000 0.00 0.00 0.00 3.16
74 75 2.159014 CCGGCACTTATACAGGCTAACA 60.159 50.000 0.00 0.00 0.00 2.41
75 76 2.480845 CCGGCACTTATACAGGCTAAC 58.519 52.381 0.00 0.00 0.00 2.34
76 77 1.202604 GCCGGCACTTATACAGGCTAA 60.203 52.381 24.80 0.00 41.21 3.09
77 78 0.391597 GCCGGCACTTATACAGGCTA 59.608 55.000 24.80 0.00 41.21 3.93
78 79 1.146263 GCCGGCACTTATACAGGCT 59.854 57.895 24.80 0.00 41.21 4.58
79 80 1.892391 GGCCGGCACTTATACAGGC 60.892 63.158 30.85 1.22 43.47 4.85
80 81 0.108585 ATGGCCGGCACTTATACAGG 59.891 55.000 30.85 0.00 0.00 4.00
81 82 1.229428 CATGGCCGGCACTTATACAG 58.771 55.000 30.85 5.34 0.00 2.74
82 83 0.817634 GCATGGCCGGCACTTATACA 60.818 55.000 30.85 15.69 0.00 2.29
83 84 1.515521 GGCATGGCCGGCACTTATAC 61.516 60.000 30.85 9.47 39.62 1.47
84 85 1.228124 GGCATGGCCGGCACTTATA 60.228 57.895 30.85 7.00 39.62 0.98
85 86 2.519302 GGCATGGCCGGCACTTAT 60.519 61.111 30.85 13.74 39.62 1.73
95 96 2.678471 AATTAAACTGCAGGCATGGC 57.322 45.000 19.93 12.14 0.00 4.40
96 97 7.491682 ACTAATTAATTAAACTGCAGGCATGG 58.508 34.615 19.93 0.00 0.00 3.66
97 98 8.408601 AGACTAATTAATTAAACTGCAGGCATG 58.591 33.333 19.93 0.00 0.00 4.06
98 99 8.525290 AGACTAATTAATTAAACTGCAGGCAT 57.475 30.769 19.93 6.02 0.00 4.40
99 100 7.938140 AGACTAATTAATTAAACTGCAGGCA 57.062 32.000 19.93 0.00 0.00 4.75
100 101 8.458843 TCAAGACTAATTAATTAAACTGCAGGC 58.541 33.333 19.93 0.04 0.00 4.85
142 143 4.379339 TCAAAAGGCGCACTTACTTTTT 57.621 36.364 10.83 1.33 41.11 1.94
143 144 4.379339 TTCAAAAGGCGCACTTACTTTT 57.621 36.364 10.83 12.47 43.10 2.27
144 145 4.202111 ACATTCAAAAGGCGCACTTACTTT 60.202 37.500 10.83 6.22 38.85 2.66
145 146 3.317993 ACATTCAAAAGGCGCACTTACTT 59.682 39.130 10.83 0.00 38.85 2.24
146 147 2.884639 ACATTCAAAAGGCGCACTTACT 59.115 40.909 10.83 0.00 38.85 2.24
147 148 3.282831 ACATTCAAAAGGCGCACTTAC 57.717 42.857 10.83 0.00 38.85 2.34
148 149 4.069304 AGTACATTCAAAAGGCGCACTTA 58.931 39.130 10.83 0.00 38.85 2.24
149 150 2.884639 AGTACATTCAAAAGGCGCACTT 59.115 40.909 10.83 7.60 42.52 3.16
150 151 2.504367 AGTACATTCAAAAGGCGCACT 58.496 42.857 10.83 0.02 0.00 4.40
151 152 2.989422 AGTACATTCAAAAGGCGCAC 57.011 45.000 10.83 0.00 0.00 5.34
152 153 2.745281 GGTAGTACATTCAAAAGGCGCA 59.255 45.455 10.83 0.00 0.00 6.09
153 154 3.007635 AGGTAGTACATTCAAAAGGCGC 58.992 45.455 0.00 0.00 0.00 6.53
154 155 4.201685 CGAAGGTAGTACATTCAAAAGGCG 60.202 45.833 23.26 8.05 38.67 5.52
155 156 4.694037 ACGAAGGTAGTACATTCAAAAGGC 59.306 41.667 23.26 0.43 38.67 4.35
156 157 5.350640 GGACGAAGGTAGTACATTCAAAAGG 59.649 44.000 23.26 11.65 38.67 3.11
157 158 5.061808 CGGACGAAGGTAGTACATTCAAAAG 59.938 44.000 23.26 11.96 38.67 2.27
158 159 4.925054 CGGACGAAGGTAGTACATTCAAAA 59.075 41.667 23.26 0.00 38.67 2.44
159 160 4.487948 CGGACGAAGGTAGTACATTCAAA 58.512 43.478 23.26 0.00 38.67 2.69
160 161 3.119388 CCGGACGAAGGTAGTACATTCAA 60.119 47.826 23.26 0.00 38.67 2.69
161 162 2.424601 CCGGACGAAGGTAGTACATTCA 59.575 50.000 23.26 0.00 38.67 2.57
162 163 2.797439 GCCGGACGAAGGTAGTACATTC 60.797 54.545 15.98 15.98 35.74 2.67
163 164 1.135721 GCCGGACGAAGGTAGTACATT 59.864 52.381 5.05 0.00 0.00 2.71
164 165 0.743097 GCCGGACGAAGGTAGTACAT 59.257 55.000 5.05 0.00 0.00 2.29
165 166 2.183409 GCCGGACGAAGGTAGTACA 58.817 57.895 5.05 0.00 0.00 2.90
176 177 1.937846 CGACAAGTATCGCCGGACG 60.938 63.158 5.05 9.12 45.62 4.79
177 178 3.993103 CGACAAGTATCGCCGGAC 58.007 61.111 5.05 0.00 34.90 4.79
183 184 4.840401 TTCATTTGAGCGACAAGTATCG 57.160 40.909 0.00 0.00 45.09 2.92
184 185 6.111768 ACATTCATTTGAGCGACAAGTATC 57.888 37.500 0.00 0.00 39.77 2.24
185 186 7.495606 TGATACATTCATTTGAGCGACAAGTAT 59.504 33.333 0.00 0.00 39.77 2.12
186 187 6.816140 TGATACATTCATTTGAGCGACAAGTA 59.184 34.615 0.00 0.00 39.77 2.24
187 188 5.643348 TGATACATTCATTTGAGCGACAAGT 59.357 36.000 0.00 0.00 39.77 3.16
188 189 6.110543 TGATACATTCATTTGAGCGACAAG 57.889 37.500 0.00 0.00 39.77 3.16
189 190 6.371271 TCTTGATACATTCATTTGAGCGACAA 59.629 34.615 0.00 0.00 33.34 3.18
190 191 5.874261 TCTTGATACATTCATTTGAGCGACA 59.126 36.000 0.00 0.00 33.34 4.35
191 192 6.188175 GTCTTGATACATTCATTTGAGCGAC 58.812 40.000 0.00 0.00 33.34 5.19
192 193 5.005682 CGTCTTGATACATTCATTTGAGCGA 59.994 40.000 0.00 0.00 33.34 4.93
193 194 5.193216 CGTCTTGATACATTCATTTGAGCG 58.807 41.667 0.00 0.00 33.34 5.03
194 195 6.111768 ACGTCTTGATACATTCATTTGAGC 57.888 37.500 0.00 0.00 33.34 4.26
197 198 9.986833 TGAAATACGTCTTGATACATTCATTTG 57.013 29.630 0.00 0.00 33.34 2.32
199 200 9.383519 ACTGAAATACGTCTTGATACATTCATT 57.616 29.630 0.00 0.00 33.34 2.57
200 201 8.948631 ACTGAAATACGTCTTGATACATTCAT 57.051 30.769 0.00 0.00 33.34 2.57
201 202 9.297586 GTACTGAAATACGTCTTGATACATTCA 57.702 33.333 0.00 0.00 0.00 2.57
202 203 9.517609 AGTACTGAAATACGTCTTGATACATTC 57.482 33.333 0.00 0.00 0.00 2.67
205 206 9.387257 TCTAGTACTGAAATACGTCTTGATACA 57.613 33.333 5.39 0.00 0.00 2.29
209 210 9.387257 TGTATCTAGTACTGAAATACGTCTTGA 57.613 33.333 5.39 0.00 34.27 3.02
220 221 9.431887 GGTCAAACAAATGTATCTAGTACTGAA 57.568 33.333 5.39 0.00 34.27 3.02
221 222 7.758076 CGGTCAAACAAATGTATCTAGTACTGA 59.242 37.037 5.39 1.42 34.27 3.41
222 223 7.758076 TCGGTCAAACAAATGTATCTAGTACTG 59.242 37.037 5.39 0.00 34.27 2.74
223 224 7.758528 GTCGGTCAAACAAATGTATCTAGTACT 59.241 37.037 0.00 0.00 34.27 2.73
224 225 7.543172 TGTCGGTCAAACAAATGTATCTAGTAC 59.457 37.037 0.00 0.00 0.00 2.73
225 226 7.604549 TGTCGGTCAAACAAATGTATCTAGTA 58.395 34.615 0.00 0.00 0.00 1.82
226 227 6.460781 TGTCGGTCAAACAAATGTATCTAGT 58.539 36.000 0.00 0.00 0.00 2.57
227 228 6.961359 TGTCGGTCAAACAAATGTATCTAG 57.039 37.500 0.00 0.00 0.00 2.43
228 229 6.932400 ACTTGTCGGTCAAACAAATGTATCTA 59.068 34.615 0.00 0.00 36.27 1.98
229 230 5.763204 ACTTGTCGGTCAAACAAATGTATCT 59.237 36.000 0.00 0.00 36.27 1.98
230 231 5.997385 ACTTGTCGGTCAAACAAATGTATC 58.003 37.500 0.00 0.00 36.27 2.24
231 232 7.681939 ATACTTGTCGGTCAAACAAATGTAT 57.318 32.000 0.00 0.00 36.27 2.29
232 233 7.499321 AATACTTGTCGGTCAAACAAATGTA 57.501 32.000 0.00 0.00 36.27 2.29
233 234 6.385649 AATACTTGTCGGTCAAACAAATGT 57.614 33.333 0.00 0.00 36.27 2.71
234 235 7.138736 AGAAATACTTGTCGGTCAAACAAATG 58.861 34.615 0.00 0.00 36.27 2.32
235 236 7.272037 AGAAATACTTGTCGGTCAAACAAAT 57.728 32.000 0.00 0.00 36.27 2.32
236 237 6.687081 AGAAATACTTGTCGGTCAAACAAA 57.313 33.333 0.00 0.00 36.27 2.83
237 238 7.170320 GTCTAGAAATACTTGTCGGTCAAACAA 59.830 37.037 0.00 0.00 35.48 2.83
238 239 6.643770 GTCTAGAAATACTTGTCGGTCAAACA 59.356 38.462 0.00 0.00 35.48 2.83
239 240 6.183359 CGTCTAGAAATACTTGTCGGTCAAAC 60.183 42.308 0.00 0.00 35.48 2.93
240 241 5.860182 CGTCTAGAAATACTTGTCGGTCAAA 59.140 40.000 0.00 0.00 35.48 2.69
241 242 5.396484 CGTCTAGAAATACTTGTCGGTCAA 58.604 41.667 0.00 0.00 32.33 3.18
242 243 4.142534 CCGTCTAGAAATACTTGTCGGTCA 60.143 45.833 0.00 0.00 43.12 4.02
243 244 4.095483 TCCGTCTAGAAATACTTGTCGGTC 59.905 45.833 11.09 0.00 45.86 4.79
244 245 4.012374 TCCGTCTAGAAATACTTGTCGGT 58.988 43.478 11.09 0.00 45.86 4.69
245 246 4.334759 TCTCCGTCTAGAAATACTTGTCGG 59.665 45.833 0.00 0.00 46.52 4.79
246 247 5.293814 TCTCTCCGTCTAGAAATACTTGTCG 59.706 44.000 0.00 0.00 34.45 4.35
247 248 6.316890 ACTCTCTCCGTCTAGAAATACTTGTC 59.683 42.308 0.00 0.00 0.00 3.18
248 249 6.094325 CACTCTCTCCGTCTAGAAATACTTGT 59.906 42.308 0.00 0.00 0.00 3.16
249 250 6.459024 CCACTCTCTCCGTCTAGAAATACTTG 60.459 46.154 0.00 0.00 0.00 3.16
250 251 5.591067 CCACTCTCTCCGTCTAGAAATACTT 59.409 44.000 0.00 0.00 0.00 2.24
251 252 5.127491 CCACTCTCTCCGTCTAGAAATACT 58.873 45.833 0.00 0.00 0.00 2.12
252 253 4.883006 ACCACTCTCTCCGTCTAGAAATAC 59.117 45.833 0.00 0.00 0.00 1.89
253 254 5.113446 ACCACTCTCTCCGTCTAGAAATA 57.887 43.478 0.00 0.00 0.00 1.40
254 255 3.970842 ACCACTCTCTCCGTCTAGAAAT 58.029 45.455 0.00 0.00 0.00 2.17
255 256 3.436577 ACCACTCTCTCCGTCTAGAAA 57.563 47.619 0.00 0.00 0.00 2.52
256 257 4.080469 ACATACCACTCTCTCCGTCTAGAA 60.080 45.833 0.00 0.00 0.00 2.10
257 258 3.455177 ACATACCACTCTCTCCGTCTAGA 59.545 47.826 0.00 0.00 0.00 2.43
258 259 3.811083 ACATACCACTCTCTCCGTCTAG 58.189 50.000 0.00 0.00 0.00 2.43
259 260 3.928005 ACATACCACTCTCTCCGTCTA 57.072 47.619 0.00 0.00 0.00 2.59
260 261 2.810870 ACATACCACTCTCTCCGTCT 57.189 50.000 0.00 0.00 0.00 4.18
261 262 5.517322 AATAACATACCACTCTCTCCGTC 57.483 43.478 0.00 0.00 0.00 4.79
262 263 8.701908 TTATAATAACATACCACTCTCTCCGT 57.298 34.615 0.00 0.00 0.00 4.69
282 283 7.547722 TCGCTCACTTCAGCAGTTTTATTATAA 59.452 33.333 0.00 0.00 39.62 0.98
285 286 5.120208 GTCGCTCACTTCAGCAGTTTTATTA 59.880 40.000 0.00 0.00 39.62 0.98
286 287 4.065088 TCGCTCACTTCAGCAGTTTTATT 58.935 39.130 0.00 0.00 39.62 1.40
287 288 3.433615 GTCGCTCACTTCAGCAGTTTTAT 59.566 43.478 0.00 0.00 39.62 1.40
288 289 2.800544 GTCGCTCACTTCAGCAGTTTTA 59.199 45.455 0.00 0.00 39.62 1.52
330 338 5.688621 GTGTCAATGGCAATATACTGCATTG 59.311 40.000 17.58 17.58 44.52 2.82
346 354 1.197721 GCTTCTTCCACGGTGTCAATG 59.802 52.381 7.45 0.00 0.00 2.82
347 361 1.072331 AGCTTCTTCCACGGTGTCAAT 59.928 47.619 7.45 0.00 0.00 2.57
349 363 0.249868 CAGCTTCTTCCACGGTGTCA 60.250 55.000 7.45 0.00 0.00 3.58
358 372 1.442769 TCATTCGCACAGCTTCTTCC 58.557 50.000 0.00 0.00 0.00 3.46
367 381 5.192927 AGAAAAGGGATTATCATTCGCACA 58.807 37.500 0.00 0.00 0.00 4.57
391 405 2.672188 CAGTACTGCTCGTATCCTCG 57.328 55.000 10.54 0.00 0.00 4.63
431 445 1.389609 GCCAGTCCTTGCCATCCATG 61.390 60.000 0.00 0.00 0.00 3.66
482 496 1.122019 AACAGAGAGGGCGGAGTGTT 61.122 55.000 0.00 0.00 0.00 3.32
485 499 0.832135 TTCAACAGAGAGGGCGGAGT 60.832 55.000 0.00 0.00 0.00 3.85
551 565 1.304464 TCCTCTGGAGCGCTCTTCA 60.304 57.895 34.46 23.97 0.00 3.02
617 631 4.196971 TCATCCTCTTCATCTTGCATGTG 58.803 43.478 0.00 0.00 0.00 3.21
621 635 5.503002 TGAAATCATCCTCTTCATCTTGCA 58.497 37.500 0.00 0.00 0.00 4.08
685 699 2.616510 GGCTTGATGGATATCTTCCCCG 60.617 54.545 2.05 0.00 44.77 5.73
690 704 9.866655 TTTGTATTAAGGCTTGATGGATATCTT 57.133 29.630 14.19 0.00 34.31 2.40
796 810 4.222145 ACTTTACATGTACACCACCGATCT 59.778 41.667 4.68 0.00 0.00 2.75
807 821 9.769093 GAAATGTCCACAATACTTTACATGTAC 57.231 33.333 4.68 0.00 0.00 2.90
865 885 3.251479 TGTGAATCATCCACCTTCTCG 57.749 47.619 0.00 0.00 33.80 4.04
892 912 6.457934 CGTGTCTACTCCATATGTCGTAAAGT 60.458 42.308 1.24 0.00 0.00 2.66
901 921 2.035961 CCACCCGTGTCTACTCCATATG 59.964 54.545 0.00 0.00 0.00 1.78
903 923 1.285667 TCCACCCGTGTCTACTCCATA 59.714 52.381 0.00 0.00 0.00 2.74
904 924 0.040646 TCCACCCGTGTCTACTCCAT 59.959 55.000 0.00 0.00 0.00 3.41
937 963 4.202398 CCCAGCATTTCTCTAGCCTCATTA 60.202 45.833 0.00 0.00 0.00 1.90
973 1000 7.310664 CAACACTCTTCAACTGCATCAATAAT 58.689 34.615 0.00 0.00 0.00 1.28
976 1003 4.558095 GCAACACTCTTCAACTGCATCAAT 60.558 41.667 0.00 0.00 0.00 2.57
977 1004 3.243168 GCAACACTCTTCAACTGCATCAA 60.243 43.478 0.00 0.00 0.00 2.57
981 1008 1.748950 TGCAACACTCTTCAACTGCA 58.251 45.000 0.00 0.00 37.46 4.41
1038 1068 1.150536 GGCCCAGTCAAAGTCCACA 59.849 57.895 0.00 0.00 0.00 4.17
1039 1069 1.150536 TGGCCCAGTCAAAGTCCAC 59.849 57.895 0.00 0.00 0.00 4.02
1127 1160 6.370994 ACATATATGTTTATGCAGAGCAGCTC 59.629 38.462 15.25 15.25 39.05 4.09
1211 1244 3.624777 CTGGCCAATATCCACTGTTTCT 58.375 45.455 7.01 0.00 0.00 2.52
1295 1328 4.320546 AACAACCATGATGGAGGATCAA 57.679 40.909 20.11 0.00 44.50 2.57
1392 1425 0.897621 GGCAACAATGGAAAGGAGGG 59.102 55.000 0.00 0.00 0.00 4.30
1499 1535 4.833380 TGTCTATCACCCATAGGCTCTTAC 59.167 45.833 0.00 0.00 40.06 2.34
1534 1571 5.317808 TCGTGATGAAGGAAAAACCCAATA 58.682 37.500 0.00 0.00 40.05 1.90
1541 1578 6.936279 ACTATCTCTCGTGATGAAGGAAAAA 58.064 36.000 0.00 0.00 0.00 1.94
1556 1593 4.701956 GCCATCTGCTCTACTATCTCTC 57.298 50.000 0.00 0.00 36.87 3.20
1619 1656 1.066787 CCCATGCAACATTGATGTGCA 60.067 47.619 17.24 17.24 43.45 4.57
1630 1667 1.812571 CTGTAGTTGTCCCCATGCAAC 59.187 52.381 5.96 5.96 43.63 4.17
1742 1842 5.104735 CCATTTAGAACTAGAGCCTTGAGGT 60.105 44.000 0.00 0.00 37.57 3.85
1750 1850 7.084486 CCAAAACAACCATTTAGAACTAGAGC 58.916 38.462 0.00 0.00 0.00 4.09
1762 1862 4.911390 TGTTCCAAACCAAAACAACCATT 58.089 34.783 0.00 0.00 30.39 3.16
1771 1871 4.406972 TCCATCAACATGTTCCAAACCAAA 59.593 37.500 8.48 0.00 0.00 3.28
1791 1897 3.757947 TCAAGTGATAGAGGGAGTCCA 57.242 47.619 12.30 0.00 34.83 4.02
1828 1937 7.384524 TGGAATCATCATCTCTTGGTCTTAT 57.615 36.000 0.00 0.00 0.00 1.73
1842 1951 3.454719 TTGGCTTCCTTGGAATCATCA 57.545 42.857 2.24 0.00 0.00 3.07
1996 2105 0.108138 CGTTGGAGACATGGGACCTC 60.108 60.000 0.00 0.00 42.32 3.85
2016 2125 3.613030 CTCACATCCCAACATCATGACA 58.387 45.455 0.00 0.00 0.00 3.58
2023 2132 2.440409 GAGTTGCTCACATCCCAACAT 58.560 47.619 5.66 0.00 40.85 2.71
2077 2186 6.863126 GTGTCAATGCATAGCAAACTTAGTTT 59.137 34.615 4.30 4.30 43.62 2.66
2127 2239 2.777832 ACTTCTCAGAATCTGGTGGC 57.222 50.000 10.71 0.00 31.51 5.01
2257 2369 8.025445 AGCAGAAATGCAAATGTTTAGACTAAG 58.975 33.333 2.73 0.00 37.25 2.18
2269 2384 4.081406 TGTCCACTAGCAGAAATGCAAAT 58.919 39.130 2.73 0.00 37.25 2.32
2347 2462 4.167307 GGGGATTAATGACTTTGGTAGGGA 59.833 45.833 0.00 0.00 0.00 4.20
2420 2544 2.350522 ACTGCACTGCACTATTGTAGC 58.649 47.619 0.00 0.00 38.97 3.58
2435 2564 0.179059 TGTCGAAGGCTGAAACTGCA 60.179 50.000 0.00 0.00 0.00 4.41
2483 2612 1.901833 TGCTCTCCATGCTAGTGTTGA 59.098 47.619 0.00 0.00 0.00 3.18
2515 2644 7.041508 CCTTGTTCATCACAAATAGATAGCCTC 60.042 40.741 0.00 0.00 45.11 4.70
2744 2874 2.487086 CCAAACACAGGACACCATCTGA 60.487 50.000 0.00 0.00 35.20 3.27
2746 2876 1.774254 TCCAAACACAGGACACCATCT 59.226 47.619 0.00 0.00 0.00 2.90
2783 2913 7.198390 CGAAGGAATAGTTTTCCACGATACTA 58.802 38.462 18.93 0.00 41.00 1.82
2787 2917 3.621715 GCGAAGGAATAGTTTTCCACGAT 59.378 43.478 23.96 7.52 41.00 3.73
2791 2921 3.322211 TCGCGAAGGAATAGTTTTCCA 57.678 42.857 6.20 0.00 41.00 3.53
2795 2925 4.325472 CGTAGTTTCGCGAAGGAATAGTTT 59.675 41.667 22.21 3.92 0.00 2.66
2818 2948 5.220710 ACATGAGTATAGGTGAATGCTCC 57.779 43.478 0.00 0.00 37.68 4.70
2825 2955 3.388024 GCCTTGGACATGAGTATAGGTGA 59.612 47.826 0.00 0.00 0.00 4.02
2831 2961 4.574674 TTTGAGCCTTGGACATGAGTAT 57.425 40.909 0.00 0.00 0.00 2.12
2868 2998 3.145551 GCCTTGAGCAGCCCATGG 61.146 66.667 4.14 4.14 42.97 3.66
2881 3011 4.467438 CCAAGTTGGGAAAATATGAGCCTT 59.533 41.667 14.64 0.00 32.67 4.35
2915 3045 4.219725 TCGAGATCACCACAACTGACAATA 59.780 41.667 0.00 0.00 0.00 1.90
2988 3118 1.213537 CCAGCATGCCTTTTCGGTG 59.786 57.895 15.66 2.94 34.25 4.94
3098 3253 0.988678 AGCATCCCCTGACCCTTACC 60.989 60.000 0.00 0.00 0.00 2.85
3099 3254 0.181350 CAGCATCCCCTGACCCTTAC 59.819 60.000 0.00 0.00 34.77 2.34
3101 3256 2.311854 CCAGCATCCCCTGACCCTT 61.312 63.158 0.00 0.00 34.77 3.95
3146 3301 2.609459 CACAATAGGACGGATGTCTTGC 59.391 50.000 0.00 0.00 44.83 4.01
3191 3346 2.584608 CCGTCCCGCTCCAGATTT 59.415 61.111 0.00 0.00 0.00 2.17
3229 3384 0.321996 GCGGGGATCATAGAGGGAAC 59.678 60.000 0.00 0.00 0.00 3.62
3314 3469 0.034896 AAGAGCGTTGGTGTACCTGG 59.965 55.000 2.32 0.00 36.82 4.45
3324 3479 6.903419 AGAAAGAAAAATAGGAAGAGCGTTG 58.097 36.000 0.00 0.00 0.00 4.10
3325 3480 7.511959 AAGAAAGAAAAATAGGAAGAGCGTT 57.488 32.000 0.00 0.00 0.00 4.84
3445 3604 6.778559 AGAGAGTGTATGGATTACCCTACTTC 59.221 42.308 0.00 0.00 37.87 3.01
3450 3609 5.144159 TGAGAGAGTGTATGGATTACCCT 57.856 43.478 0.00 0.00 35.38 4.34
3451 3610 7.179338 ACATATGAGAGAGTGTATGGATTACCC 59.821 40.741 10.38 0.00 34.81 3.69
3452 3611 8.031864 CACATATGAGAGAGTGTATGGATTACC 58.968 40.741 10.38 0.00 0.00 2.85
3453 3612 7.543868 GCACATATGAGAGAGTGTATGGATTAC 59.456 40.741 10.38 0.00 34.59 1.89
3454 3613 7.233348 TGCACATATGAGAGAGTGTATGGATTA 59.767 37.037 10.38 0.00 34.59 1.75
3455 3614 6.042437 TGCACATATGAGAGAGTGTATGGATT 59.958 38.462 10.38 0.00 34.59 3.01
3458 3617 5.205759 TGCACATATGAGAGAGTGTATGG 57.794 43.478 10.38 0.00 34.59 2.74
3460 3619 6.042437 TCCAATGCACATATGAGAGAGTGTAT 59.958 38.462 10.38 0.00 38.62 2.29
3461 3620 5.363580 TCCAATGCACATATGAGAGAGTGTA 59.636 40.000 10.38 0.00 34.59 2.90
3464 3623 4.701765 GTCCAATGCACATATGAGAGAGT 58.298 43.478 10.38 0.00 0.00 3.24
3469 3628 2.545526 GGTCGTCCAATGCACATATGAG 59.454 50.000 10.38 2.11 0.00 2.90
3474 3633 1.378378 TGGGTCGTCCAATGCACAT 59.622 52.632 0.04 0.00 43.84 3.21
3500 3659 2.795175 TAATGGAAGCGGAGTCGATC 57.205 50.000 0.00 0.00 39.00 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.