Multiple sequence alignment - TraesCS2B01G021200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G021200 chr2B 100.000 2603 0 0 1 2603 10189157 10186555 0.000000e+00 4807.0
1 TraesCS2B01G021200 chr2B 81.595 163 12 10 1027 1189 10181963 10181819 4.550000e-23 119.0
2 TraesCS2B01G021200 chr2B 100.000 44 0 0 1 44 731309535 731309578 5.970000e-12 82.4
3 TraesCS2B01G021200 chr2B 97.500 40 1 0 1 40 3991242 3991281 4.650000e-08 69.4
4 TraesCS2B01G021200 chr2B 97.500 40 1 0 1 40 4086257 4086296 4.650000e-08 69.4
5 TraesCS2B01G021200 chr2D 90.764 877 40 21 952 1801 1637754 1638616 0.000000e+00 1133.0
6 TraesCS2B01G021200 chr2D 82.483 588 72 16 1040 1622 1659555 1660116 1.080000e-133 486.0
7 TraesCS2B01G021200 chr2D 82.143 280 43 5 2064 2340 577323722 577323447 1.560000e-57 233.0
8 TraesCS2B01G021200 chr2D 92.683 164 7 1 763 926 1637525 1637683 5.600000e-57 231.0
9 TraesCS2B01G021200 chr2D 87.864 206 6 5 1965 2170 1638771 1638957 9.370000e-55 224.0
10 TraesCS2B01G021200 chr2D 88.060 201 7 5 2320 2520 1662198 1662381 3.370000e-54 222.0
11 TraesCS2B01G021200 chr2D 84.181 177 12 9 457 631 613817918 613817756 9.640000e-35 158.0
12 TraesCS2B01G021200 chr2D 96.721 61 2 0 658 718 1637054 1637114 4.580000e-18 102.0
13 TraesCS2B01G021200 chr2D 87.500 80 2 1 831 902 1659305 1659384 4.620000e-13 86.1
14 TraesCS2B01G021200 chr2D 94.340 53 3 0 849 901 5643409 5643357 5.970000e-12 82.4
15 TraesCS2B01G021200 chr2D 97.778 45 1 0 853 897 1667787 1667831 7.720000e-11 78.7
16 TraesCS2B01G021200 chr2D 100.000 28 0 0 930 957 1637716 1637743 5.000000e-03 52.8
17 TraesCS2B01G021200 chr2A 91.207 671 41 9 949 1617 746933 747587 0.000000e+00 896.0
18 TraesCS2B01G021200 chr2A 83.168 505 73 8 1124 1628 766336993 766337485 3.950000e-123 451.0
19 TraesCS2B01G021200 chr2A 79.542 655 93 25 944 1585 715380 716006 1.850000e-116 429.0
20 TraesCS2B01G021200 chr2A 90.432 324 13 3 314 631 741140 741451 6.700000e-111 411.0
21 TraesCS2B01G021200 chr2A 80.000 595 83 19 1040 1628 820044 820608 8.670000e-110 407.0
22 TraesCS2B01G021200 chr2A 80.000 595 83 19 1040 1628 892058 892622 8.670000e-110 407.0
23 TraesCS2B01G021200 chr2A 81.481 513 73 14 1124 1628 955216 955714 4.030000e-108 401.0
24 TraesCS2B01G021200 chr2A 89.535 258 27 0 44 301 737119 737376 6.950000e-86 327.0
25 TraesCS2B01G021200 chr2A 96.257 187 7 0 740 926 746680 746866 9.050000e-80 307.0
26 TraesCS2B01G021200 chr2A 82.105 285 47 3 2059 2342 70660252 70660533 9.310000e-60 241.0
27 TraesCS2B01G021200 chr2A 82.129 263 40 5 1316 1576 895764 896021 4.360000e-53 219.0
28 TraesCS2B01G021200 chr2A 93.333 90 1 2 818 902 953609 953698 7.560000e-26 128.0
29 TraesCS2B01G021200 chr2A 86.842 114 6 4 818 926 766336645 766336754 4.550000e-23 119.0
30 TraesCS2B01G021200 chr2A 96.923 65 2 0 654 718 746562 746626 2.740000e-20 110.0
31 TraesCS2B01G021200 chr2A 85.714 98 1 2 818 902 891738 891835 9.920000e-15 91.6
32 TraesCS2B01G021200 chr2A 96.970 33 1 0 975 1007 891987 892019 3.620000e-04 56.5
33 TraesCS2B01G021200 chr2A 96.970 33 1 0 975 1007 955082 955114 3.620000e-04 56.5
34 TraesCS2B01G021200 chr5A 84.813 507 61 12 1118 1622 617526122 617526614 1.800000e-136 496.0
35 TraesCS2B01G021200 chr3D 82.867 286 44 4 2059 2344 28680129 28680409 4.300000e-63 252.0
36 TraesCS2B01G021200 chr3D 97.674 43 1 0 1 43 14385643 14385685 9.990000e-10 75.0
37 TraesCS2B01G021200 chr3D 95.652 46 2 0 1 46 100200245 100200290 9.990000e-10 75.0
38 TraesCS2B01G021200 chr7A 82.624 282 43 5 2064 2344 717076741 717077017 7.200000e-61 244.0
39 TraesCS2B01G021200 chr3B 82.394 284 46 3 2059 2342 222823138 222823417 7.200000e-61 244.0
40 TraesCS2B01G021200 chr3B 81.944 288 44 6 2059 2342 665990094 665990377 1.200000e-58 237.0
41 TraesCS2B01G021200 chr3B 95.652 46 2 0 1 46 659731131 659731176 9.990000e-10 75.0
42 TraesCS2B01G021200 chr6B 82.042 284 48 2 2059 2342 560197102 560196822 3.350000e-59 239.0
43 TraesCS2B01G021200 chr6B 94.521 73 3 1 434 506 4666981 4667052 7.610000e-21 111.0
44 TraesCS2B01G021200 chr6D 82.772 267 43 3 2077 2342 289507691 289507427 4.330000e-58 235.0
45 TraesCS2B01G021200 chr6D 94.186 86 4 1 1889 1973 389366506 389366591 2.100000e-26 130.0
46 TraesCS2B01G021200 chr4A 82.374 278 41 7 2067 2342 589511108 589511379 4.330000e-58 235.0
47 TraesCS2B01G021200 chr7B 96.386 83 2 1 1889 1970 632954441 632954523 4.520000e-28 135.0
48 TraesCS2B01G021200 chr7B 92.222 90 6 1 1889 1977 715360393 715360304 2.720000e-25 126.0
49 TraesCS2B01G021200 chr1B 97.468 79 1 1 1889 1966 4339149 4339071 1.630000e-27 134.0
50 TraesCS2B01G021200 chr1B 100.000 43 0 0 1 43 17753849 17753807 2.150000e-11 80.5
51 TraesCS2B01G021200 chr4B 94.186 86 4 1 1889 1973 500839974 500840059 2.100000e-26 130.0
52 TraesCS2B01G021200 chr4B 95.455 44 2 0 1 44 628295584 628295541 1.290000e-08 71.3
53 TraesCS2B01G021200 chr1D 93.258 89 4 2 1889 1975 268929842 268929930 2.100000e-26 130.0
54 TraesCS2B01G021200 chr1D 93.182 88 4 2 1889 1974 91235138 91235225 7.560000e-26 128.0
55 TraesCS2B01G021200 chr7D 93.103 87 5 1 1889 1974 540399166 540399252 2.720000e-25 126.0
56 TraesCS2B01G021200 chr7D 90.476 84 7 1 433 516 501731361 501731443 2.740000e-20 110.0
57 TraesCS2B01G021200 chr5B 89.583 96 8 2 1889 1982 625957454 625957549 1.270000e-23 121.0
58 TraesCS2B01G021200 chr4D 88.095 84 9 1 433 516 261239621 261239539 5.930000e-17 99.0
59 TraesCS2B01G021200 chr6A 97.727 44 1 0 1 44 502554109 502554152 2.780000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G021200 chr2B 10186555 10189157 2602 True 4807.000000 4807 100.000000 1 2603 1 chr2B.!!$R2 2602
1 TraesCS2B01G021200 chr2D 1637054 1638957 1903 False 348.560000 1133 93.606400 658 2170 5 chr2D.!!$F2 1512
2 TraesCS2B01G021200 chr2D 1659305 1662381 3076 False 264.700000 486 86.014333 831 2520 3 chr2D.!!$F3 1689
3 TraesCS2B01G021200 chr2A 746562 747587 1025 False 437.666667 896 94.795667 654 1617 3 chr2A.!!$F5 963
4 TraesCS2B01G021200 chr2A 715380 716006 626 False 429.000000 429 79.542000 944 1585 1 chr2A.!!$F1 641
5 TraesCS2B01G021200 chr2A 820044 820608 564 False 407.000000 407 80.000000 1040 1628 1 chr2A.!!$F2 588
6 TraesCS2B01G021200 chr2A 737119 741451 4332 False 369.000000 411 89.983500 44 631 2 chr2A.!!$F4 587
7 TraesCS2B01G021200 chr2A 766336645 766337485 840 False 285.000000 451 85.005000 818 1628 2 chr2A.!!$F8 810

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
252 253 0.322975 ACTGCAGTAGGTCTGGCAAG 59.677 55.0 20.16 0.0 43.78 4.01 F
288 289 0.678048 GCGGCACAGAGAAAGGGATT 60.678 55.0 0.00 0.0 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1199 5449 0.171231 CTTGATGGACTCGACGCTGA 59.829 55.0 0.00 0.0 0.00 4.26 R
1804 6967 0.889994 TCACCTTTCATGCATGGCAC 59.110 50.0 25.97 0.0 43.04 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.941453 TGTGTAGATCGAGCTTGGAC 57.059 50.000 9.21 1.04 0.00 4.02
20 21 1.476891 TGTGTAGATCGAGCTTGGACC 59.523 52.381 9.21 0.00 0.00 4.46
21 22 1.476891 GTGTAGATCGAGCTTGGACCA 59.523 52.381 9.21 0.00 0.00 4.02
22 23 2.094182 GTGTAGATCGAGCTTGGACCAA 60.094 50.000 9.21 6.76 0.00 3.67
23 24 2.565391 TGTAGATCGAGCTTGGACCAAA 59.435 45.455 9.21 0.00 0.00 3.28
24 25 2.393271 AGATCGAGCTTGGACCAAAG 57.607 50.000 8.59 4.01 0.00 2.77
30 31 2.354902 GCTTGGACCAAAGCCATGT 58.645 52.632 8.59 0.00 45.60 3.21
31 32 0.681175 GCTTGGACCAAAGCCATGTT 59.319 50.000 8.59 0.00 45.60 2.71
32 33 1.070601 GCTTGGACCAAAGCCATGTTT 59.929 47.619 8.59 0.00 45.60 2.83
33 34 2.485302 GCTTGGACCAAAGCCATGTTTT 60.485 45.455 8.59 0.00 45.60 2.43
34 35 3.392882 CTTGGACCAAAGCCATGTTTTC 58.607 45.455 8.59 0.00 34.90 2.29
35 36 2.676748 TGGACCAAAGCCATGTTTTCT 58.323 42.857 0.00 0.00 0.00 2.52
36 37 3.838565 TGGACCAAAGCCATGTTTTCTA 58.161 40.909 0.00 0.00 0.00 2.10
37 38 3.572255 TGGACCAAAGCCATGTTTTCTAC 59.428 43.478 0.00 0.00 0.00 2.59
38 39 3.826729 GGACCAAAGCCATGTTTTCTACT 59.173 43.478 0.00 0.00 0.00 2.57
39 40 5.007682 GGACCAAAGCCATGTTTTCTACTA 58.992 41.667 0.00 0.00 0.00 1.82
40 41 5.123979 GGACCAAAGCCATGTTTTCTACTAG 59.876 44.000 0.00 0.00 0.00 2.57
41 42 5.631119 ACCAAAGCCATGTTTTCTACTAGT 58.369 37.500 0.00 0.00 0.00 2.57
42 43 5.473504 ACCAAAGCCATGTTTTCTACTAGTG 59.526 40.000 5.39 0.00 0.00 2.74
73 74 3.244976 GGCATGAAATTCAACAAGGACG 58.755 45.455 0.00 0.00 0.00 4.79
76 77 3.216187 TGAAATTCAACAAGGACGGGA 57.784 42.857 0.00 0.00 0.00 5.14
103 104 3.449746 TGGATCCCGTCAAGGAATTTT 57.550 42.857 9.90 0.00 45.00 1.82
123 124 2.605257 TCCCTATTCACCGGTATGGAG 58.395 52.381 6.87 2.44 42.00 3.86
135 136 2.772287 GGTATGGAGGTAGCATTCAGC 58.228 52.381 0.00 0.00 46.19 4.26
145 146 1.512734 GCATTCAGCGACGGCAAAG 60.513 57.895 0.00 0.00 43.41 2.77
176 177 1.001378 GAATGGCAGCAACGTCAAAGT 60.001 47.619 0.00 0.00 0.00 2.66
177 178 1.032014 ATGGCAGCAACGTCAAAGTT 58.968 45.000 0.00 0.00 34.15 2.66
186 187 5.227184 CAGCAACGTCAAAGTTAAAGACAAC 59.773 40.000 0.00 0.00 32.35 3.32
214 215 0.530650 CAATAGTGGCATCGACGGCT 60.531 55.000 6.60 0.00 0.00 5.52
230 231 4.623814 CTCCGGCAGCAAGAATGA 57.376 55.556 0.00 0.00 0.00 2.57
252 253 0.322975 ACTGCAGTAGGTCTGGCAAG 59.677 55.000 20.16 0.00 43.78 4.01
258 259 1.903183 AGTAGGTCTGGCAAGGAGAAC 59.097 52.381 0.00 0.00 0.00 3.01
261 262 1.371558 GTCTGGCAAGGAGAACGGT 59.628 57.895 0.00 0.00 0.00 4.83
262 263 0.951040 GTCTGGCAAGGAGAACGGTG 60.951 60.000 0.00 0.00 0.00 4.94
288 289 0.678048 GCGGCACAGAGAAAGGGATT 60.678 55.000 0.00 0.00 0.00 3.01
292 293 3.682718 CGGCACAGAGAAAGGGATTATGT 60.683 47.826 0.00 0.00 0.00 2.29
296 297 4.637534 CACAGAGAAAGGGATTATGTGTGG 59.362 45.833 5.49 0.00 45.61 4.17
312 4031 2.423538 GTGTGGCCTTGGTATGATGAAC 59.576 50.000 3.32 0.00 0.00 3.18
313 4032 2.024414 GTGGCCTTGGTATGATGAACC 58.976 52.381 3.32 0.00 37.53 3.62
316 4035 2.620367 GGCCTTGGTATGATGAACCACA 60.620 50.000 0.00 0.00 46.56 4.17
317 4036 3.088532 GCCTTGGTATGATGAACCACAA 58.911 45.455 0.00 0.00 46.56 3.33
378 4130 3.567585 GCTTAGCTGAAGAATCCAATCCC 59.432 47.826 0.00 0.00 37.33 3.85
424 4182 9.361315 TGATCAACAATTTTTAGATGCTGATTG 57.639 29.630 0.00 0.00 31.89 2.67
448 4206 8.243961 TGAATTTCCAGAGTTTGGTAATGAAA 57.756 30.769 5.47 0.00 43.70 2.69
449 4207 8.700051 TGAATTTCCAGAGTTTGGTAATGAAAA 58.300 29.630 5.47 0.00 43.70 2.29
572 4330 3.250762 TGCTGATCAACTACACTTGCAAC 59.749 43.478 0.00 0.00 0.00 4.17
573 4331 3.499918 GCTGATCAACTACACTTGCAACT 59.500 43.478 0.00 0.00 0.00 3.16
574 4332 4.690748 GCTGATCAACTACACTTGCAACTA 59.309 41.667 0.00 0.00 0.00 2.24
575 4333 5.179368 GCTGATCAACTACACTTGCAACTAA 59.821 40.000 0.00 0.00 0.00 2.24
576 4334 6.293407 GCTGATCAACTACACTTGCAACTAAA 60.293 38.462 0.00 0.00 0.00 1.85
577 4335 7.561021 TGATCAACTACACTTGCAACTAAAA 57.439 32.000 0.00 0.00 0.00 1.52
578 4336 7.990917 TGATCAACTACACTTGCAACTAAAAA 58.009 30.769 0.00 0.00 0.00 1.94
579 4337 8.629158 TGATCAACTACACTTGCAACTAAAAAT 58.371 29.630 0.00 0.00 0.00 1.82
611 4369 6.539649 TTCTTTTCATTTCAGGTACGAGTG 57.460 37.500 0.00 0.00 0.00 3.51
631 4389 4.287067 AGTGTGAGAGTGGTAATGGAATGT 59.713 41.667 0.00 0.00 0.00 2.71
632 4390 5.003804 GTGTGAGAGTGGTAATGGAATGTT 58.996 41.667 0.00 0.00 0.00 2.71
633 4391 5.473504 GTGTGAGAGTGGTAATGGAATGTTT 59.526 40.000 0.00 0.00 0.00 2.83
634 4392 6.653320 GTGTGAGAGTGGTAATGGAATGTTTA 59.347 38.462 0.00 0.00 0.00 2.01
635 4393 7.174253 GTGTGAGAGTGGTAATGGAATGTTTAA 59.826 37.037 0.00 0.00 0.00 1.52
636 4394 7.174253 TGTGAGAGTGGTAATGGAATGTTTAAC 59.826 37.037 0.00 0.00 0.00 2.01
637 4395 6.370442 TGAGAGTGGTAATGGAATGTTTAACG 59.630 38.462 0.00 0.00 0.00 3.18
638 4396 6.235664 AGAGTGGTAATGGAATGTTTAACGT 58.764 36.000 0.00 0.00 0.00 3.99
639 4397 6.148811 AGAGTGGTAATGGAATGTTTAACGTG 59.851 38.462 0.00 0.00 0.00 4.49
640 4398 4.854839 GTGGTAATGGAATGTTTAACGTGC 59.145 41.667 0.00 0.00 0.00 5.34
641 4399 4.519350 TGGTAATGGAATGTTTAACGTGCA 59.481 37.500 0.00 0.00 0.00 4.57
642 4400 5.009710 TGGTAATGGAATGTTTAACGTGCAA 59.990 36.000 0.00 0.00 0.00 4.08
643 4401 5.343860 GGTAATGGAATGTTTAACGTGCAAC 59.656 40.000 0.00 0.00 0.00 4.17
644 4402 4.576216 ATGGAATGTTTAACGTGCAACA 57.424 36.364 13.55 13.55 37.31 3.33
645 4403 3.958704 TGGAATGTTTAACGTGCAACAG 58.041 40.909 15.70 0.00 36.36 3.16
646 4404 3.628032 TGGAATGTTTAACGTGCAACAGA 59.372 39.130 15.70 0.00 36.36 3.41
647 4405 4.219033 GGAATGTTTAACGTGCAACAGAG 58.781 43.478 15.70 0.00 36.36 3.35
648 4406 3.896648 ATGTTTAACGTGCAACAGAGG 57.103 42.857 15.70 0.00 36.36 3.69
649 4407 2.907634 TGTTTAACGTGCAACAGAGGA 58.092 42.857 8.38 0.00 35.74 3.71
650 4408 3.472652 TGTTTAACGTGCAACAGAGGAT 58.527 40.909 8.38 0.00 35.74 3.24
651 4409 3.496884 TGTTTAACGTGCAACAGAGGATC 59.503 43.478 8.38 0.00 35.74 3.36
685 4443 7.639113 TTCAGTAAACAGACATTTTGAAGGT 57.361 32.000 0.00 0.00 0.00 3.50
708 4466 3.120792 GCATGCACATAATTTGCTCCAG 58.879 45.455 14.21 0.00 40.86 3.86
718 4476 6.382570 ACATAATTTGCTCCAGTCTAGACTCT 59.617 38.462 22.76 0.00 40.20 3.24
719 4477 7.561722 ACATAATTTGCTCCAGTCTAGACTCTA 59.438 37.037 22.76 12.33 40.20 2.43
720 4478 6.463995 AATTTGCTCCAGTCTAGACTCTAG 57.536 41.667 22.76 21.08 40.20 2.43
722 4480 3.879998 TGCTCCAGTCTAGACTCTAGTG 58.120 50.000 22.76 14.95 40.20 2.74
723 4481 3.264706 TGCTCCAGTCTAGACTCTAGTGT 59.735 47.826 22.76 0.00 40.20 3.55
724 4482 4.263550 TGCTCCAGTCTAGACTCTAGTGTT 60.264 45.833 22.76 0.00 40.20 3.32
726 4484 5.526111 GCTCCAGTCTAGACTCTAGTGTTAG 59.474 48.000 22.76 11.84 40.20 2.34
727 4485 5.991861 TCCAGTCTAGACTCTAGTGTTAGG 58.008 45.833 22.76 16.46 40.20 2.69
728 4486 5.488203 TCCAGTCTAGACTCTAGTGTTAGGT 59.512 44.000 22.76 0.00 40.20 3.08
729 4487 5.818857 CCAGTCTAGACTCTAGTGTTAGGTC 59.181 48.000 22.76 0.00 40.20 3.85
730 4488 5.818857 CAGTCTAGACTCTAGTGTTAGGTCC 59.181 48.000 22.76 0.00 40.20 4.46
731 4489 5.727766 AGTCTAGACTCTAGTGTTAGGTCCT 59.272 44.000 20.00 0.00 36.92 3.85
732 4490 6.051074 GTCTAGACTCTAGTGTTAGGTCCTC 58.949 48.000 15.91 0.00 32.22 3.71
734 4492 5.523883 AGACTCTAGTGTTAGGTCCTCTT 57.476 43.478 0.00 0.00 32.22 2.85
735 4493 5.503002 AGACTCTAGTGTTAGGTCCTCTTC 58.497 45.833 0.00 0.00 32.22 2.87
736 4494 5.014333 AGACTCTAGTGTTAGGTCCTCTTCA 59.986 44.000 0.00 0.00 32.22 3.02
737 4495 5.833340 ACTCTAGTGTTAGGTCCTCTTCAT 58.167 41.667 0.00 0.00 0.00 2.57
738 4496 5.889289 ACTCTAGTGTTAGGTCCTCTTCATC 59.111 44.000 0.00 0.00 0.00 2.92
739 4497 5.202004 TCTAGTGTTAGGTCCTCTTCATCC 58.798 45.833 0.00 0.00 0.00 3.51
740 4498 3.108376 AGTGTTAGGTCCTCTTCATCCC 58.892 50.000 0.00 0.00 0.00 3.85
741 4499 2.170817 GTGTTAGGTCCTCTTCATCCCC 59.829 54.545 0.00 0.00 0.00 4.81
784 4908 1.630878 AGACCGGAGAAAAGGCTCAAT 59.369 47.619 9.46 0.00 36.62 2.57
787 4911 1.740025 CCGGAGAAAAGGCTCAATCAC 59.260 52.381 0.00 0.00 36.62 3.06
800 4924 5.048504 AGGCTCAATCACAAGTTGTTGTATG 60.049 40.000 5.57 3.85 45.57 2.39
957 5129 4.393834 TCTAGCTAGCATCTCGATCAACT 58.606 43.478 18.83 0.00 0.00 3.16
958 5130 5.552178 TCTAGCTAGCATCTCGATCAACTA 58.448 41.667 18.83 0.00 0.00 2.24
977 5173 7.975608 TCAACTATAGCTAGCTAGGAGAGTAA 58.024 38.462 29.81 18.43 31.45 2.24
1029 5267 1.153369 CCTAGTCATGGTGGCGGTG 60.153 63.158 0.00 0.00 0.00 4.94
1030 5268 1.153369 CTAGTCATGGTGGCGGTGG 60.153 63.158 0.00 0.00 0.00 4.61
1031 5269 3.323758 TAGTCATGGTGGCGGTGGC 62.324 63.158 0.00 0.00 38.90 5.01
1075 5313 1.825191 ACATCATCCATGCCGGTGC 60.825 57.895 1.90 0.00 35.65 5.01
1121 5365 3.214190 ATGCTTCCACCAGCTGCCA 62.214 57.895 8.66 0.00 40.79 4.92
1254 5504 2.990479 GCCAAGGTCGGTGGAGAT 59.010 61.111 0.00 0.00 38.54 2.75
1365 5615 1.241315 CGGTGGAAGAATTTGCCGGT 61.241 55.000 1.90 0.00 34.78 5.28
1623 5957 5.483811 TGAAAAATGAGAATGCATGCATGT 58.516 33.333 32.79 22.92 36.68 3.21
1640 5978 7.306574 GCATGCATGTATTCATCTCATTTTGTG 60.307 37.037 26.79 0.00 31.15 3.33
1641 5979 6.037726 TGCATGTATTCATCTCATTTTGTGC 58.962 36.000 0.00 0.00 31.15 4.57
1645 5983 6.614160 TGTATTCATCTCATTTTGTGCTGTG 58.386 36.000 0.00 0.00 0.00 3.66
1669 6827 3.698040 CCTGTGAAATGAATTGAGGGAGG 59.302 47.826 0.00 0.00 0.00 4.30
1670 6828 3.698040 CTGTGAAATGAATTGAGGGAGGG 59.302 47.826 0.00 0.00 0.00 4.30
1671 6829 3.333381 TGTGAAATGAATTGAGGGAGGGA 59.667 43.478 0.00 0.00 0.00 4.20
1672 6830 3.950395 GTGAAATGAATTGAGGGAGGGAG 59.050 47.826 0.00 0.00 0.00 4.30
1709 6867 9.785982 TCAATATCCAAATAAATATCGTGGTGA 57.214 29.630 0.00 0.00 0.00 4.02
1748 6911 0.671251 GGAGCATCGACGAGGAAGAT 59.329 55.000 14.58 0.00 34.37 2.40
1763 6926 2.163010 GGAAGATGTGGTTCATGCTGTG 59.837 50.000 0.00 0.00 36.83 3.66
1774 6937 0.745486 CATGCTGTGGGCGAAGATGA 60.745 55.000 0.00 0.00 45.43 2.92
1785 6948 1.005340 CGAAGATGACCTGCTGCTTC 58.995 55.000 0.00 0.00 33.45 3.86
1841 7072 0.458716 GAAGCTCCGACAGTGCCTAC 60.459 60.000 0.00 0.00 35.51 3.18
1869 7100 1.479323 TCTATTGTACGGCACCCACTC 59.521 52.381 0.00 0.00 0.00 3.51
1871 7102 0.036388 ATTGTACGGCACCCACTCTG 60.036 55.000 0.00 0.00 0.00 3.35
1885 7116 0.901124 ACTCTGATGTGTGCTCCCTC 59.099 55.000 0.00 0.00 0.00 4.30
1888 7119 1.483827 TCTGATGTGTGCTCCCTCATC 59.516 52.381 0.00 0.00 37.68 2.92
1889 7120 1.485480 CTGATGTGTGCTCCCTCATCT 59.515 52.381 12.96 0.00 37.93 2.90
1890 7121 1.483827 TGATGTGTGCTCCCTCATCTC 59.516 52.381 12.96 0.00 37.93 2.75
1891 7122 1.761784 GATGTGTGCTCCCTCATCTCT 59.238 52.381 0.00 0.00 35.32 3.10
1892 7123 0.900421 TGTGTGCTCCCTCATCTCTG 59.100 55.000 0.00 0.00 0.00 3.35
1893 7124 0.901124 GTGTGCTCCCTCATCTCTGT 59.099 55.000 0.00 0.00 0.00 3.41
1894 7125 1.134848 GTGTGCTCCCTCATCTCTGTC 60.135 57.143 0.00 0.00 0.00 3.51
1895 7126 0.463620 GTGCTCCCTCATCTCTGTCC 59.536 60.000 0.00 0.00 0.00 4.02
1896 7127 0.689080 TGCTCCCTCATCTCTGTCCC 60.689 60.000 0.00 0.00 0.00 4.46
1897 7128 0.689080 GCTCCCTCATCTCTGTCCCA 60.689 60.000 0.00 0.00 0.00 4.37
1898 7129 1.871418 CTCCCTCATCTCTGTCCCAA 58.129 55.000 0.00 0.00 0.00 4.12
1899 7130 2.191400 CTCCCTCATCTCTGTCCCAAA 58.809 52.381 0.00 0.00 0.00 3.28
1900 7131 2.573462 CTCCCTCATCTCTGTCCCAAAA 59.427 50.000 0.00 0.00 0.00 2.44
1901 7132 3.192944 TCCCTCATCTCTGTCCCAAAAT 58.807 45.455 0.00 0.00 0.00 1.82
1902 7133 4.370776 TCCCTCATCTCTGTCCCAAAATA 58.629 43.478 0.00 0.00 0.00 1.40
1903 7134 4.977739 TCCCTCATCTCTGTCCCAAAATAT 59.022 41.667 0.00 0.00 0.00 1.28
1904 7135 6.150332 TCCCTCATCTCTGTCCCAAAATATA 58.850 40.000 0.00 0.00 0.00 0.86
1905 7136 6.619437 TCCCTCATCTCTGTCCCAAAATATAA 59.381 38.462 0.00 0.00 0.00 0.98
1906 7137 6.939163 CCCTCATCTCTGTCCCAAAATATAAG 59.061 42.308 0.00 0.00 0.00 1.73
1907 7138 7.202130 CCCTCATCTCTGTCCCAAAATATAAGA 60.202 40.741 0.00 0.00 0.00 2.10
1908 7139 8.213679 CCTCATCTCTGTCCCAAAATATAAGAA 58.786 37.037 0.00 0.00 0.00 2.52
1909 7140 8.964476 TCATCTCTGTCCCAAAATATAAGAAC 57.036 34.615 0.00 0.00 0.00 3.01
1910 7141 8.772250 TCATCTCTGTCCCAAAATATAAGAACT 58.228 33.333 0.00 0.00 0.00 3.01
1911 7142 9.401058 CATCTCTGTCCCAAAATATAAGAACTT 57.599 33.333 0.00 0.00 0.00 2.66
1912 7143 9.981460 ATCTCTGTCCCAAAATATAAGAACTTT 57.019 29.630 0.00 0.00 0.00 2.66
1913 7144 9.807921 TCTCTGTCCCAAAATATAAGAACTTTT 57.192 29.630 0.00 0.00 0.00 2.27
1957 7188 9.677567 CAAAAACATTCTTATATTATGGGACGG 57.322 33.333 0.00 0.00 0.00 4.79
1958 7189 9.635404 AAAAACATTCTTATATTATGGGACGGA 57.365 29.630 0.00 0.00 0.00 4.69
1959 7190 8.848474 AAACATTCTTATATTATGGGACGGAG 57.152 34.615 0.00 0.00 0.00 4.63
1960 7191 6.947464 ACATTCTTATATTATGGGACGGAGG 58.053 40.000 0.00 0.00 0.00 4.30
1961 7192 6.070194 ACATTCTTATATTATGGGACGGAGGG 60.070 42.308 0.00 0.00 0.00 4.30
1962 7193 5.279562 TCTTATATTATGGGACGGAGGGA 57.720 43.478 0.00 0.00 0.00 4.20
1963 7194 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
1964 7195 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
1981 7212 6.208204 GGAGGGAGTACTATTTATGTTCGCTA 59.792 42.308 0.00 0.00 0.00 4.26
2007 7238 3.665544 GCAAGGTGCACACAATTGT 57.334 47.368 20.43 4.92 44.26 2.71
2049 7280 4.302559 CCTACTAAGGCTTCCTTTGGTT 57.697 45.455 1.30 0.00 41.69 3.67
2050 7281 4.663334 CCTACTAAGGCTTCCTTTGGTTT 58.337 43.478 1.30 0.00 41.69 3.27
2051 7282 4.459337 CCTACTAAGGCTTCCTTTGGTTTG 59.541 45.833 1.30 2.07 41.69 2.93
2053 7284 5.056553 ACTAAGGCTTCCTTTGGTTTGTA 57.943 39.130 1.30 0.00 41.69 2.41
2117 7348 2.149578 GCAGTGAGATGGCATGTATCC 58.850 52.381 3.81 0.00 0.00 2.59
2120 7351 2.779430 AGTGAGATGGCATGTATCCCAA 59.221 45.455 3.81 0.00 34.25 4.12
2122 7353 4.141088 AGTGAGATGGCATGTATCCCAATT 60.141 41.667 3.81 0.00 34.25 2.32
2124 7355 3.415212 AGATGGCATGTATCCCAATTCG 58.585 45.455 3.81 0.00 34.25 3.34
2125 7356 2.727123 TGGCATGTATCCCAATTCGT 57.273 45.000 0.00 0.00 0.00 3.85
2127 7358 4.365514 TGGCATGTATCCCAATTCGTAT 57.634 40.909 0.00 0.00 0.00 3.06
2129 7360 5.487433 TGGCATGTATCCCAATTCGTATAG 58.513 41.667 0.00 0.00 0.00 1.31
2166 7397 8.161640 TCATTTGATGCATAGGATAGGGATTA 57.838 34.615 0.00 0.00 32.28 1.75
2170 7401 9.466497 TTTGATGCATAGGATAGGGATTATTTC 57.534 33.333 0.00 0.00 32.28 2.17
2171 7402 8.161640 TGATGCATAGGATAGGGATTATTTCA 57.838 34.615 0.00 0.00 32.28 2.69
2172 7403 8.784880 TGATGCATAGGATAGGGATTATTTCAT 58.215 33.333 0.00 0.00 32.28 2.57
2173 7404 9.282569 GATGCATAGGATAGGGATTATTTCATC 57.717 37.037 0.00 0.00 32.28 2.92
2175 7406 7.125659 TGCATAGGATAGGGATTATTTCATCGA 59.874 37.037 0.00 0.00 0.00 3.59
2176 7407 7.655328 GCATAGGATAGGGATTATTTCATCGAG 59.345 40.741 0.00 0.00 0.00 4.04
2177 7408 6.552445 AGGATAGGGATTATTTCATCGAGG 57.448 41.667 0.00 0.00 0.00 4.63
2178 7409 5.104735 AGGATAGGGATTATTTCATCGAGGC 60.105 44.000 0.00 0.00 0.00 4.70
2181 7412 5.413309 AGGGATTATTTCATCGAGGCTAG 57.587 43.478 0.00 0.00 0.00 3.42
2183 7414 4.020128 GGGATTATTTCATCGAGGCTAGGT 60.020 45.833 0.00 0.00 0.00 3.08
2184 7415 5.513267 GGGATTATTTCATCGAGGCTAGGTT 60.513 44.000 0.00 0.00 0.00 3.50
2185 7416 6.295688 GGGATTATTTCATCGAGGCTAGGTTA 60.296 42.308 0.00 0.00 0.00 2.85
2187 7418 7.824779 GGATTATTTCATCGAGGCTAGGTTAAT 59.175 37.037 0.00 0.00 0.00 1.40
2188 7419 7.962964 TTATTTCATCGAGGCTAGGTTAATG 57.037 36.000 0.00 0.00 0.00 1.90
2190 7421 5.353394 TTCATCGAGGCTAGGTTAATGTT 57.647 39.130 0.00 0.00 0.00 2.71
2191 7422 5.353394 TCATCGAGGCTAGGTTAATGTTT 57.647 39.130 0.00 0.00 0.00 2.83
2217 7448 7.928908 TTTTTCTTCGAAATGTGAAGGATTG 57.071 32.000 0.00 0.00 42.43 2.67
2218 7449 6.875948 TTTCTTCGAAATGTGAAGGATTGA 57.124 33.333 0.00 0.00 42.43 2.57
2219 7450 7.452880 TTTCTTCGAAATGTGAAGGATTGAT 57.547 32.000 0.00 0.00 42.43 2.57
2220 7451 7.452880 TTCTTCGAAATGTGAAGGATTGATT 57.547 32.000 0.00 0.00 42.43 2.57
2221 7452 7.076842 TCTTCGAAATGTGAAGGATTGATTC 57.923 36.000 0.00 0.00 42.43 2.52
2222 7453 5.818136 TCGAAATGTGAAGGATTGATTCC 57.182 39.130 0.00 0.00 45.85 3.01
2270 7501 8.762481 ATATTACTACAAATGAAAGGAACCCC 57.238 34.615 0.00 0.00 0.00 4.95
2271 7502 4.463050 ACTACAAATGAAAGGAACCCCA 57.537 40.909 0.00 0.00 33.88 4.96
2272 7503 4.810345 ACTACAAATGAAAGGAACCCCAA 58.190 39.130 0.00 0.00 33.88 4.12
2273 7504 5.212745 ACTACAAATGAAAGGAACCCCAAA 58.787 37.500 0.00 0.00 33.88 3.28
2274 7505 4.687901 ACAAATGAAAGGAACCCCAAAG 57.312 40.909 0.00 0.00 33.88 2.77
2282 7513 6.726379 TGAAAGGAACCCCAAAGAAAATTTT 58.274 32.000 2.28 2.28 33.88 1.82
2283 7514 7.862675 TGAAAGGAACCCCAAAGAAAATTTTA 58.137 30.769 2.75 0.00 33.88 1.52
2284 7515 7.771361 TGAAAGGAACCCCAAAGAAAATTTTAC 59.229 33.333 2.75 0.00 33.88 2.01
2286 7517 8.555896 AAGGAACCCCAAAGAAAATTTTACTA 57.444 30.769 2.75 0.00 33.88 1.82
2315 7546 9.768215 AAATTCCTATCTTTTACAATTCCTCCA 57.232 29.630 0.00 0.00 0.00 3.86
2316 7547 9.768215 AATTCCTATCTTTTACAATTCCTCCAA 57.232 29.630 0.00 0.00 0.00 3.53
2317 7548 9.768215 ATTCCTATCTTTTACAATTCCTCCAAA 57.232 29.630 0.00 0.00 0.00 3.28
2318 7549 9.594936 TTCCTATCTTTTACAATTCCTCCAAAA 57.405 29.630 0.00 0.00 0.00 2.44
2400 8385 7.426929 AATTCGTTGTGATATATCTTGAGGC 57.573 36.000 13.79 0.00 0.00 4.70
2417 8402 3.006967 TGAGGCTTGACTTCCTACAAGTC 59.993 47.826 7.43 7.43 45.38 3.01
2423 8408 2.067013 GACTTCCTACAAGTCGTTGGC 58.933 52.381 0.00 0.00 40.04 4.52
2424 8409 1.270678 ACTTCCTACAAGTCGTTGGCC 60.271 52.381 0.00 0.00 40.04 5.36
2425 8410 0.759959 TTCCTACAAGTCGTTGGCCA 59.240 50.000 0.00 0.00 40.04 5.36
2426 8411 0.981183 TCCTACAAGTCGTTGGCCAT 59.019 50.000 6.09 0.00 40.04 4.40
2427 8412 1.086696 CCTACAAGTCGTTGGCCATG 58.913 55.000 6.09 2.50 38.07 3.66
2428 8413 0.447801 CTACAAGTCGTTGGCCATGC 59.552 55.000 6.09 1.21 38.07 4.06
2429 8414 0.036164 TACAAGTCGTTGGCCATGCT 59.964 50.000 6.09 0.00 38.07 3.79
2430 8415 0.036164 ACAAGTCGTTGGCCATGCTA 59.964 50.000 6.09 0.00 38.07 3.49
2431 8416 0.729116 CAAGTCGTTGGCCATGCTAG 59.271 55.000 6.09 0.00 0.00 3.42
2432 8417 0.613260 AAGTCGTTGGCCATGCTAGA 59.387 50.000 6.09 0.00 0.00 2.43
2433 8418 0.176680 AGTCGTTGGCCATGCTAGAG 59.823 55.000 6.09 0.00 0.00 2.43
2434 8419 0.175760 GTCGTTGGCCATGCTAGAGA 59.824 55.000 6.09 0.00 0.00 3.10
2435 8420 1.123077 TCGTTGGCCATGCTAGAGAT 58.877 50.000 6.09 0.00 0.00 2.75
2436 8421 2.035961 GTCGTTGGCCATGCTAGAGATA 59.964 50.000 6.09 0.00 0.00 1.98
2437 8422 2.899900 TCGTTGGCCATGCTAGAGATAT 59.100 45.455 6.09 0.00 0.00 1.63
2458 8443 1.334599 GCATCAAAAAGTCGTTGGCGA 60.335 47.619 0.00 0.00 45.79 5.54
2467 8452 1.585517 TCGTTGGCGATTCCACGTA 59.414 52.632 0.00 0.00 46.55 3.57
2469 8454 1.009903 CGTTGGCGATTCCACGTACA 61.010 55.000 0.00 0.00 46.55 2.90
2528 8513 4.623814 GCACTAGCTGCATGTGGA 57.376 55.556 20.58 0.00 46.29 4.02
2529 8514 2.858622 GCACTAGCTGCATGTGGAA 58.141 52.632 20.58 0.00 46.29 3.53
2530 8515 1.167851 GCACTAGCTGCATGTGGAAA 58.832 50.000 20.58 0.00 46.29 3.13
2531 8516 1.541147 GCACTAGCTGCATGTGGAAAA 59.459 47.619 20.58 0.00 46.29 2.29
2532 8517 2.030007 GCACTAGCTGCATGTGGAAAAA 60.030 45.455 20.58 0.00 46.29 1.94
2559 8544 8.209917 ACTTTTTCTGCTAATATAGAAACGGG 57.790 34.615 0.00 0.00 41.23 5.28
2560 8545 7.282450 ACTTTTTCTGCTAATATAGAAACGGGG 59.718 37.037 0.00 0.00 41.23 5.73
2561 8546 6.488769 TTTCTGCTAATATAGAAACGGGGA 57.511 37.500 0.00 0.00 37.83 4.81
2562 8547 6.488769 TTCTGCTAATATAGAAACGGGGAA 57.511 37.500 0.00 0.00 30.49 3.97
2563 8548 6.681729 TCTGCTAATATAGAAACGGGGAAT 57.318 37.500 0.00 0.00 0.00 3.01
2564 8549 7.786046 TCTGCTAATATAGAAACGGGGAATA 57.214 36.000 0.00 0.00 0.00 1.75
2565 8550 7.609056 TCTGCTAATATAGAAACGGGGAATAC 58.391 38.462 0.00 0.00 0.00 1.89
2566 8551 7.453752 TCTGCTAATATAGAAACGGGGAATACT 59.546 37.037 0.00 0.00 0.00 2.12
2567 8552 8.654485 TGCTAATATAGAAACGGGGAATACTA 57.346 34.615 0.00 0.00 0.00 1.82
2568 8553 9.092338 TGCTAATATAGAAACGGGGAATACTAA 57.908 33.333 0.00 0.00 0.00 2.24
2574 8559 5.063880 AGAAACGGGGAATACTAATGATGC 58.936 41.667 0.00 0.00 0.00 3.91
2575 8560 4.431416 AACGGGGAATACTAATGATGCA 57.569 40.909 0.00 0.00 0.00 3.96
2576 8561 4.431416 ACGGGGAATACTAATGATGCAA 57.569 40.909 0.00 0.00 0.00 4.08
2577 8562 4.787551 ACGGGGAATACTAATGATGCAAA 58.212 39.130 0.00 0.00 0.00 3.68
2578 8563 4.821805 ACGGGGAATACTAATGATGCAAAG 59.178 41.667 0.00 0.00 0.00 2.77
2579 8564 4.821805 CGGGGAATACTAATGATGCAAAGT 59.178 41.667 0.00 0.00 0.00 2.66
2580 8565 5.995282 CGGGGAATACTAATGATGCAAAGTA 59.005 40.000 0.00 0.00 0.00 2.24
2581 8566 6.147821 CGGGGAATACTAATGATGCAAAGTAG 59.852 42.308 0.00 0.00 0.00 2.57
2582 8567 6.072452 GGGGAATACTAATGATGCAAAGTAGC 60.072 42.308 7.04 0.00 0.00 3.58
2592 8577 2.699954 TGCAAAGTAGCAGTAGGAAGC 58.300 47.619 0.00 0.00 40.11 3.86
2593 8578 2.038426 TGCAAAGTAGCAGTAGGAAGCA 59.962 45.455 0.00 0.00 40.11 3.91
2594 8579 3.074412 GCAAAGTAGCAGTAGGAAGCAA 58.926 45.455 0.00 0.00 0.00 3.91
2595 8580 3.502211 GCAAAGTAGCAGTAGGAAGCAAA 59.498 43.478 0.00 0.00 0.00 3.68
2596 8581 4.378874 GCAAAGTAGCAGTAGGAAGCAAAG 60.379 45.833 0.00 0.00 0.00 2.77
2597 8582 4.891992 AAGTAGCAGTAGGAAGCAAAGA 57.108 40.909 0.00 0.00 0.00 2.52
2598 8583 4.891992 AGTAGCAGTAGGAAGCAAAGAA 57.108 40.909 0.00 0.00 0.00 2.52
2599 8584 4.826556 AGTAGCAGTAGGAAGCAAAGAAG 58.173 43.478 0.00 0.00 0.00 2.85
2600 8585 3.064900 AGCAGTAGGAAGCAAAGAAGG 57.935 47.619 0.00 0.00 0.00 3.46
2601 8586 2.087646 GCAGTAGGAAGCAAAGAAGGG 58.912 52.381 0.00 0.00 0.00 3.95
2602 8587 2.290323 GCAGTAGGAAGCAAAGAAGGGA 60.290 50.000 0.00 0.00 0.00 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.476891 GGTCCAAGCTCGATCTACACA 59.523 52.381 0.00 0.00 0.00 3.72
2 3 1.847328 TGGTCCAAGCTCGATCTACA 58.153 50.000 0.00 0.00 0.00 2.74
3 4 2.961526 TTGGTCCAAGCTCGATCTAC 57.038 50.000 0.00 0.00 0.00 2.59
4 5 2.418746 GCTTTGGTCCAAGCTCGATCTA 60.419 50.000 15.02 0.00 0.00 1.98
5 6 1.677217 GCTTTGGTCCAAGCTCGATCT 60.677 52.381 15.02 0.00 0.00 2.75
6 7 0.729690 GCTTTGGTCCAAGCTCGATC 59.270 55.000 15.02 0.00 0.00 3.69
7 8 0.678048 GGCTTTGGTCCAAGCTCGAT 60.678 55.000 19.19 0.00 0.00 3.59
8 9 1.302511 GGCTTTGGTCCAAGCTCGA 60.303 57.895 19.19 0.56 0.00 4.04
9 10 0.962356 ATGGCTTTGGTCCAAGCTCG 60.962 55.000 19.19 6.86 37.13 5.03
10 11 0.529378 CATGGCTTTGGTCCAAGCTC 59.471 55.000 19.19 12.85 37.13 4.09
11 12 0.178953 ACATGGCTTTGGTCCAAGCT 60.179 50.000 19.19 4.76 37.13 3.74
12 13 0.681175 AACATGGCTTTGGTCCAAGC 59.319 50.000 14.31 14.31 37.13 4.01
13 14 3.070015 AGAAAACATGGCTTTGGTCCAAG 59.930 43.478 4.09 0.85 37.13 3.61
14 15 3.037549 AGAAAACATGGCTTTGGTCCAA 58.962 40.909 0.00 0.00 37.13 3.53
15 16 2.676748 AGAAAACATGGCTTTGGTCCA 58.323 42.857 0.00 0.00 38.09 4.02
16 17 3.826729 AGTAGAAAACATGGCTTTGGTCC 59.173 43.478 0.00 0.00 0.00 4.46
17 18 5.705905 ACTAGTAGAAAACATGGCTTTGGTC 59.294 40.000 3.59 0.00 0.00 4.02
18 19 5.473504 CACTAGTAGAAAACATGGCTTTGGT 59.526 40.000 3.59 0.00 0.00 3.67
19 20 5.473504 ACACTAGTAGAAAACATGGCTTTGG 59.526 40.000 3.59 0.00 0.00 3.28
20 21 6.560253 ACACTAGTAGAAAACATGGCTTTG 57.440 37.500 3.59 0.00 0.00 2.77
21 22 6.998673 AGAACACTAGTAGAAAACATGGCTTT 59.001 34.615 3.59 0.00 0.00 3.51
22 23 6.534634 AGAACACTAGTAGAAAACATGGCTT 58.465 36.000 3.59 0.00 0.00 4.35
23 24 6.115448 AGAACACTAGTAGAAAACATGGCT 57.885 37.500 3.59 0.00 0.00 4.75
24 25 6.348540 CCAAGAACACTAGTAGAAAACATGGC 60.349 42.308 3.59 0.00 0.00 4.40
25 26 6.934645 TCCAAGAACACTAGTAGAAAACATGG 59.065 38.462 3.59 5.91 0.00 3.66
26 27 7.962964 TCCAAGAACACTAGTAGAAAACATG 57.037 36.000 3.59 0.00 0.00 3.21
27 28 7.607991 CCATCCAAGAACACTAGTAGAAAACAT 59.392 37.037 3.59 0.00 0.00 2.71
28 29 6.934645 CCATCCAAGAACACTAGTAGAAAACA 59.065 38.462 3.59 0.00 0.00 2.83
29 30 6.128254 GCCATCCAAGAACACTAGTAGAAAAC 60.128 42.308 3.59 0.00 0.00 2.43
30 31 5.938125 GCCATCCAAGAACACTAGTAGAAAA 59.062 40.000 3.59 0.00 0.00 2.29
31 32 5.012664 TGCCATCCAAGAACACTAGTAGAAA 59.987 40.000 3.59 0.00 0.00 2.52
32 33 4.530553 TGCCATCCAAGAACACTAGTAGAA 59.469 41.667 3.59 0.00 0.00 2.10
33 34 4.093743 TGCCATCCAAGAACACTAGTAGA 58.906 43.478 3.59 0.00 0.00 2.59
34 35 4.471904 TGCCATCCAAGAACACTAGTAG 57.528 45.455 0.00 0.00 0.00 2.57
35 36 4.469586 TCATGCCATCCAAGAACACTAGTA 59.530 41.667 0.00 0.00 0.00 1.82
36 37 3.264193 TCATGCCATCCAAGAACACTAGT 59.736 43.478 0.00 0.00 0.00 2.57
37 38 3.877559 TCATGCCATCCAAGAACACTAG 58.122 45.455 0.00 0.00 0.00 2.57
38 39 3.998913 TCATGCCATCCAAGAACACTA 57.001 42.857 0.00 0.00 0.00 2.74
39 40 2.885135 TCATGCCATCCAAGAACACT 57.115 45.000 0.00 0.00 0.00 3.55
40 41 3.940209 TTTCATGCCATCCAAGAACAC 57.060 42.857 0.00 0.00 31.48 3.32
41 42 4.527427 TGAATTTCATGCCATCCAAGAACA 59.473 37.500 0.00 0.00 31.48 3.18
42 43 5.075858 TGAATTTCATGCCATCCAAGAAC 57.924 39.130 0.00 0.00 31.48 3.01
73 74 1.367840 CGGGATCCATCTCGTTCCC 59.632 63.158 15.23 0.00 45.33 3.97
103 104 2.605257 CTCCATACCGGTGAATAGGGA 58.395 52.381 19.93 13.12 35.57 4.20
108 109 1.692519 GCTACCTCCATACCGGTGAAT 59.307 52.381 19.93 0.00 34.76 2.57
123 124 2.526120 GCCGTCGCTGAATGCTACC 61.526 63.158 0.00 0.00 40.11 3.18
135 136 2.179018 CCATTGCCTTTGCCGTCG 59.821 61.111 0.00 0.00 36.33 5.12
139 140 0.035176 TTCTTGCCATTGCCTTTGCC 59.965 50.000 0.00 0.00 36.33 4.52
145 146 0.461339 CTGCCATTCTTGCCATTGCC 60.461 55.000 0.00 0.00 36.33 4.52
176 177 0.948678 GCAGTGGCCGTTGTCTTTAA 59.051 50.000 0.00 0.00 0.00 1.52
177 178 0.179043 TGCAGTGGCCGTTGTCTTTA 60.179 50.000 0.00 0.00 40.13 1.85
214 215 0.250684 TTGTCATTCTTGCTGCCGGA 60.251 50.000 5.05 0.00 0.00 5.14
218 219 1.001048 TGCAGTTGTCATTCTTGCTGC 60.001 47.619 7.31 7.31 46.47 5.25
221 222 3.120060 CCTACTGCAGTTGTCATTCTTGC 60.120 47.826 27.06 0.00 0.00 4.01
223 224 4.040952 AGACCTACTGCAGTTGTCATTCTT 59.959 41.667 33.01 19.41 33.65 2.52
225 226 3.681897 CAGACCTACTGCAGTTGTCATTC 59.318 47.826 33.01 21.20 39.86 2.67
228 229 1.344438 CCAGACCTACTGCAGTTGTCA 59.656 52.381 33.01 16.44 44.52 3.58
230 231 0.035458 GCCAGACCTACTGCAGTTGT 59.965 55.000 27.06 21.98 44.52 3.32
252 253 2.700773 GCCATTGCCACCGTTCTCC 61.701 63.158 0.00 0.00 0.00 3.71
261 262 4.657408 TCTGTGCCGCCATTGCCA 62.657 61.111 0.00 0.00 0.00 4.92
262 263 3.818787 CTCTGTGCCGCCATTGCC 61.819 66.667 0.00 0.00 0.00 4.52
275 276 3.629398 GCCACACATAATCCCTTTCTCTG 59.371 47.826 0.00 0.00 0.00 3.35
277 278 2.952310 GGCCACACATAATCCCTTTCTC 59.048 50.000 0.00 0.00 0.00 2.87
288 289 3.457749 TCATCATACCAAGGCCACACATA 59.542 43.478 5.01 0.00 0.00 2.29
292 293 2.620367 GGTTCATCATACCAAGGCCACA 60.620 50.000 5.01 0.00 35.67 4.17
296 297 2.722094 TGTGGTTCATCATACCAAGGC 58.278 47.619 0.00 0.00 46.62 4.35
312 4031 8.721019 AAATAACTATTTGATGGCAATTGTGG 57.279 30.769 7.40 0.00 34.79 4.17
313 4032 9.590451 AGAAATAACTATTTGATGGCAATTGTG 57.410 29.630 7.40 0.00 36.13 3.33
343 4095 0.577269 GCTAAGCCGATAGCACAACG 59.423 55.000 8.45 0.00 46.06 4.10
378 4130 8.263940 TGATCATTAAAAGTTCCTTTCTACCG 57.736 34.615 0.00 0.00 31.99 4.02
442 4200 6.172630 ACCAAACTGCTGTTTTCTTTTCATT 58.827 32.000 17.94 0.00 43.13 2.57
448 4206 6.280855 ACTTAACCAAACTGCTGTTTTCTT 57.719 33.333 17.94 13.81 43.13 2.52
449 4207 5.914898 ACTTAACCAAACTGCTGTTTTCT 57.085 34.783 17.94 8.78 43.13 2.52
523 4281 4.645136 TCATACCTGCTCTACGTTTCTGAT 59.355 41.667 0.00 0.00 0.00 2.90
527 4285 4.106029 TGTCATACCTGCTCTACGTTTC 57.894 45.455 0.00 0.00 0.00 2.78
531 4289 2.797156 GCAATGTCATACCTGCTCTACG 59.203 50.000 1.44 0.00 0.00 3.51
532 4290 3.806521 CAGCAATGTCATACCTGCTCTAC 59.193 47.826 7.40 0.00 43.13 2.59
581 4339 9.410556 CGTACCTGAAATGAAAAGAATGATTTT 57.589 29.630 0.00 0.00 35.12 1.82
582 4340 8.792633 TCGTACCTGAAATGAAAAGAATGATTT 58.207 29.630 0.00 0.00 0.00 2.17
606 4364 2.492088 TCCATTACCACTCTCACACTCG 59.508 50.000 0.00 0.00 0.00 4.18
611 4369 7.527457 GTTAAACATTCCATTACCACTCTCAC 58.473 38.462 0.00 0.00 0.00 3.51
631 4389 3.994392 GAGATCCTCTGTTGCACGTTAAA 59.006 43.478 0.00 0.00 0.00 1.52
632 4390 3.258372 AGAGATCCTCTGTTGCACGTTAA 59.742 43.478 0.00 0.00 39.62 2.01
633 4391 2.826128 AGAGATCCTCTGTTGCACGTTA 59.174 45.455 0.00 0.00 39.62 3.18
634 4392 1.620819 AGAGATCCTCTGTTGCACGTT 59.379 47.619 0.00 0.00 39.62 3.99
635 4393 1.261480 AGAGATCCTCTGTTGCACGT 58.739 50.000 0.00 0.00 39.62 4.49
685 4443 3.056035 TGGAGCAAATTATGTGCATGCAA 60.056 39.130 24.58 13.36 44.74 4.08
708 4466 5.993055 AGGACCTAACACTAGAGTCTAGAC 58.007 45.833 29.87 15.41 31.31 2.59
718 4476 4.287552 GGGATGAAGAGGACCTAACACTA 58.712 47.826 0.00 0.00 0.00 2.74
719 4477 3.108376 GGGATGAAGAGGACCTAACACT 58.892 50.000 0.00 0.00 0.00 3.55
720 4478 2.170817 GGGGATGAAGAGGACCTAACAC 59.829 54.545 0.00 0.00 0.00 3.32
722 4480 2.765502 AGGGGATGAAGAGGACCTAAC 58.234 52.381 0.00 0.00 0.00 2.34
723 4481 3.014110 AGAAGGGGATGAAGAGGACCTAA 59.986 47.826 0.00 0.00 0.00 2.69
724 4482 2.592512 AGAAGGGGATGAAGAGGACCTA 59.407 50.000 0.00 0.00 0.00 3.08
726 4484 1.886422 AGAAGGGGATGAAGAGGACC 58.114 55.000 0.00 0.00 0.00 4.46
727 4485 3.111484 AGAAGAAGGGGATGAAGAGGAC 58.889 50.000 0.00 0.00 0.00 3.85
728 4486 3.498614 AGAAGAAGGGGATGAAGAGGA 57.501 47.619 0.00 0.00 0.00 3.71
729 4487 4.582973 AAAGAAGAAGGGGATGAAGAGG 57.417 45.455 0.00 0.00 0.00 3.69
768 4892 2.426522 TGTGATTGAGCCTTTTCTCCG 58.573 47.619 0.00 0.00 32.22 4.63
784 4908 3.066064 GGTGCACATACAACAACTTGTGA 59.934 43.478 20.43 0.00 40.98 3.58
787 4911 2.360483 TGGGTGCACATACAACAACTTG 59.640 45.455 20.43 0.00 0.00 3.16
800 4924 1.503818 CCTACACGTGTTGGGTGCAC 61.504 60.000 33.16 8.80 38.98 4.57
957 5129 8.948145 CGATTTTTACTCTCCTAGCTAGCTATA 58.052 37.037 24.36 14.55 0.00 1.31
958 5130 7.666388 TCGATTTTTACTCTCCTAGCTAGCTAT 59.334 37.037 24.36 11.33 0.00 2.97
977 5173 6.480524 TCGATCAATCTTGTTGTCGATTTT 57.519 33.333 11.01 0.00 35.04 1.82
1048 5286 2.516930 GGATGATGTGGCCACCGG 60.517 66.667 32.62 0.00 0.00 5.28
1049 5287 1.152902 ATGGATGATGTGGCCACCG 60.153 57.895 32.62 0.00 33.93 4.94
1078 5316 1.827399 TTGTCTTCCTCCCTCGCCAC 61.827 60.000 0.00 0.00 0.00 5.01
1079 5317 1.535444 TTGTCTTCCTCCCTCGCCA 60.535 57.895 0.00 0.00 0.00 5.69
1080 5318 1.219393 CTTGTCTTCCTCCCTCGCC 59.781 63.158 0.00 0.00 0.00 5.54
1081 5319 1.219393 CCTTGTCTTCCTCCCTCGC 59.781 63.158 0.00 0.00 0.00 5.03
1082 5320 1.137872 CATCCTTGTCTTCCTCCCTCG 59.862 57.143 0.00 0.00 0.00 4.63
1083 5321 2.472029 TCATCCTTGTCTTCCTCCCTC 58.528 52.381 0.00 0.00 0.00 4.30
1088 5326 3.371380 GGAAGCATCATCCTTGTCTTCCT 60.371 47.826 10.58 0.00 43.63 3.36
1121 5365 1.305381 AGCTTGGAGTACTCGCCCT 60.305 57.895 16.56 7.36 32.47 5.19
1199 5449 0.171231 CTTGATGGACTCGACGCTGA 59.829 55.000 0.00 0.00 0.00 4.26
1365 5615 0.950555 GGTCGTTGATGCAGTGCTCA 60.951 55.000 17.60 14.12 0.00 4.26
1534 5784 6.863126 CACTCTTCACTCTTCTTCTTCTTCTC 59.137 42.308 0.00 0.00 0.00 2.87
1535 5785 6.738453 GCACTCTTCACTCTTCTTCTTCTTCT 60.738 42.308 0.00 0.00 0.00 2.85
1536 5786 5.405269 GCACTCTTCACTCTTCTTCTTCTTC 59.595 44.000 0.00 0.00 0.00 2.87
1623 5957 6.127925 GGTCACAGCACAAAATGAGATGAATA 60.128 38.462 0.28 0.00 29.31 1.75
1640 5978 4.022935 TCAATTCATTTCACAGGTCACAGC 60.023 41.667 0.00 0.00 0.00 4.40
1641 5979 5.335426 CCTCAATTCATTTCACAGGTCACAG 60.335 44.000 0.00 0.00 0.00 3.66
1645 5983 4.335416 TCCCTCAATTCATTTCACAGGTC 58.665 43.478 0.00 0.00 0.00 3.85
1669 6827 5.724328 TGGATATTGACATCTAATCGCTCC 58.276 41.667 0.00 0.00 0.00 4.70
1670 6828 7.658179 TTTGGATATTGACATCTAATCGCTC 57.342 36.000 0.00 0.00 0.00 5.03
1671 6829 9.725019 TTATTTGGATATTGACATCTAATCGCT 57.275 29.630 0.00 0.00 0.00 4.93
1726 6885 2.279120 CCTCGTCGATGCTCCTGC 60.279 66.667 0.00 0.00 40.20 4.85
1748 6911 1.902918 GCCCACAGCATGAACCACA 60.903 57.895 0.00 0.00 42.97 4.17
1763 6926 1.817099 CAGCAGGTCATCTTCGCCC 60.817 63.158 0.00 0.00 0.00 6.13
1774 6937 1.294780 CGGAGAAGAAGCAGCAGGT 59.705 57.895 0.00 0.00 0.00 4.00
1801 6964 1.259142 CCTTTCATGCATGGCACCCA 61.259 55.000 25.97 2.92 43.04 4.51
1802 6965 1.259840 ACCTTTCATGCATGGCACCC 61.260 55.000 25.97 0.00 43.04 4.61
1804 6967 0.889994 TCACCTTTCATGCATGGCAC 59.110 50.000 25.97 0.00 43.04 5.01
1805 6968 1.546923 CTTCACCTTTCATGCATGGCA 59.453 47.619 25.97 10.93 44.86 4.92
1807 6970 1.822990 AGCTTCACCTTTCATGCATGG 59.177 47.619 25.97 12.86 0.00 3.66
1808 6971 2.159282 GGAGCTTCACCTTTCATGCATG 60.159 50.000 21.07 21.07 0.00 4.06
1809 6972 2.097825 GGAGCTTCACCTTTCATGCAT 58.902 47.619 0.00 0.00 0.00 3.96
1850 7081 1.480954 AGAGTGGGTGCCGTACAATAG 59.519 52.381 0.00 0.00 0.00 1.73
1869 7100 1.485480 AGATGAGGGAGCACACATCAG 59.515 52.381 11.70 0.00 40.74 2.90
1871 7102 1.761784 AGAGATGAGGGAGCACACATC 59.238 52.381 2.46 2.46 39.24 3.06
1885 7116 8.970859 AGTTCTTATATTTTGGGACAGAGATG 57.029 34.615 0.00 0.00 42.39 2.90
1931 7162 9.677567 CCGTCCCATAATATAAGAATGTTTTTG 57.322 33.333 0.00 0.00 0.00 2.44
1932 7163 9.635404 TCCGTCCCATAATATAAGAATGTTTTT 57.365 29.630 0.00 0.00 0.00 1.94
1933 7164 9.284968 CTCCGTCCCATAATATAAGAATGTTTT 57.715 33.333 0.00 0.00 0.00 2.43
1934 7165 7.883311 CCTCCGTCCCATAATATAAGAATGTTT 59.117 37.037 0.00 0.00 0.00 2.83
1935 7166 7.394816 CCTCCGTCCCATAATATAAGAATGTT 58.605 38.462 0.00 0.00 0.00 2.71
1936 7167 6.070194 CCCTCCGTCCCATAATATAAGAATGT 60.070 42.308 0.00 0.00 0.00 2.71
1937 7168 6.156256 TCCCTCCGTCCCATAATATAAGAATG 59.844 42.308 0.00 0.00 0.00 2.67
1938 7169 6.269194 TCCCTCCGTCCCATAATATAAGAAT 58.731 40.000 0.00 0.00 0.00 2.40
1939 7170 5.657446 TCCCTCCGTCCCATAATATAAGAA 58.343 41.667 0.00 0.00 0.00 2.52
1940 7171 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
1941 7172 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
1942 7173 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
1943 7174 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
1944 7175 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
1945 7176 3.400322 AGTACTCCCTCCGTCCCATAATA 59.600 47.826 0.00 0.00 0.00 0.98
1946 7177 2.179424 AGTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
1947 7178 1.572415 AGTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
1948 7179 1.229131 AGTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
1949 7180 1.229131 TAGTACTCCCTCCGTCCCAT 58.771 55.000 0.00 0.00 0.00 4.00
1950 7181 1.229131 ATAGTACTCCCTCCGTCCCA 58.771 55.000 0.00 0.00 0.00 4.37
1951 7182 2.378378 AATAGTACTCCCTCCGTCCC 57.622 55.000 0.00 0.00 0.00 4.46
1952 7183 4.831710 ACATAAATAGTACTCCCTCCGTCC 59.168 45.833 0.00 0.00 0.00 4.79
1953 7184 6.402456 AACATAAATAGTACTCCCTCCGTC 57.598 41.667 0.00 0.00 0.00 4.79
1954 7185 5.009410 CGAACATAAATAGTACTCCCTCCGT 59.991 44.000 0.00 0.00 0.00 4.69
1955 7186 5.458891 CGAACATAAATAGTACTCCCTCCG 58.541 45.833 0.00 0.00 0.00 4.63
1956 7187 5.010820 AGCGAACATAAATAGTACTCCCTCC 59.989 44.000 0.00 0.00 0.00 4.30
1957 7188 6.086785 AGCGAACATAAATAGTACTCCCTC 57.913 41.667 0.00 0.00 0.00 4.30
1958 7189 6.293845 CGTAGCGAACATAAATAGTACTCCCT 60.294 42.308 0.00 0.00 0.00 4.20
1959 7190 5.855395 CGTAGCGAACATAAATAGTACTCCC 59.145 44.000 0.00 0.00 0.00 4.30
1960 7191 6.908216 CGTAGCGAACATAAATAGTACTCC 57.092 41.667 0.00 0.00 0.00 3.85
2033 7264 5.636123 TGATACAAACCAAAGGAAGCCTTA 58.364 37.500 0.00 0.00 43.92 2.69
2041 7272 8.924511 ACATCCTATATGATACAAACCAAAGG 57.075 34.615 0.00 0.00 0.00 3.11
2166 7397 5.930135 ACATTAACCTAGCCTCGATGAAAT 58.070 37.500 0.00 0.00 0.00 2.17
2170 7401 6.436843 AAAAACATTAACCTAGCCTCGATG 57.563 37.500 0.00 0.00 0.00 3.84
2195 7426 6.875948 TCAATCCTTCACATTTCGAAGAAA 57.124 33.333 0.00 0.00 45.90 2.52
2196 7427 7.362056 GGAATCAATCCTTCACATTTCGAAGAA 60.362 37.037 0.00 0.00 43.89 2.52
2198 7429 6.261118 GGAATCAATCCTTCACATTTCGAAG 58.739 40.000 0.00 0.00 45.56 3.79
2244 7475 9.856162 GGGGTTCCTTTCATTTGTAGTAATATA 57.144 33.333 0.00 0.00 0.00 0.86
2245 7476 8.340757 TGGGGTTCCTTTCATTTGTAGTAATAT 58.659 33.333 0.00 0.00 0.00 1.28
2246 7477 7.700846 TGGGGTTCCTTTCATTTGTAGTAATA 58.299 34.615 0.00 0.00 0.00 0.98
2247 7478 6.557568 TGGGGTTCCTTTCATTTGTAGTAAT 58.442 36.000 0.00 0.00 0.00 1.89
2248 7479 5.954757 TGGGGTTCCTTTCATTTGTAGTAA 58.045 37.500 0.00 0.00 0.00 2.24
2249 7480 5.586155 TGGGGTTCCTTTCATTTGTAGTA 57.414 39.130 0.00 0.00 0.00 1.82
2250 7481 4.463050 TGGGGTTCCTTTCATTTGTAGT 57.537 40.909 0.00 0.00 0.00 2.73
2251 7482 5.538433 TCTTTGGGGTTCCTTTCATTTGTAG 59.462 40.000 0.00 0.00 0.00 2.74
2253 7484 4.294347 TCTTTGGGGTTCCTTTCATTTGT 58.706 39.130 0.00 0.00 0.00 2.83
2254 7485 4.953940 TCTTTGGGGTTCCTTTCATTTG 57.046 40.909 0.00 0.00 0.00 2.32
2256 7487 5.966853 TTTTCTTTGGGGTTCCTTTCATT 57.033 34.783 0.00 0.00 0.00 2.57
2257 7488 6.514012 AATTTTCTTTGGGGTTCCTTTCAT 57.486 33.333 0.00 0.00 0.00 2.57
2258 7489 5.966853 AATTTTCTTTGGGGTTCCTTTCA 57.033 34.783 0.00 0.00 0.00 2.69
2259 7490 7.990886 AGTAAAATTTTCTTTGGGGTTCCTTTC 59.009 33.333 6.72 0.00 0.00 2.62
2261 7492 7.446106 AGTAAAATTTTCTTTGGGGTTCCTT 57.554 32.000 6.72 0.00 0.00 3.36
2263 7494 7.728148 TGTAGTAAAATTTTCTTTGGGGTTCC 58.272 34.615 6.72 0.00 0.00 3.62
2264 7495 9.602568 TTTGTAGTAAAATTTTCTTTGGGGTTC 57.397 29.630 6.72 0.00 0.00 3.62
2304 7535 9.719355 GGTTTACATAAATTTTGGAGGAATTGT 57.281 29.630 0.00 0.00 0.00 2.71
2305 7536 9.717942 TGGTTTACATAAATTTTGGAGGAATTG 57.282 29.630 0.00 0.00 0.00 2.32
2308 7539 9.771534 CTTTGGTTTACATAAATTTTGGAGGAA 57.228 29.630 0.00 0.00 0.00 3.36
2309 7540 8.371699 CCTTTGGTTTACATAAATTTTGGAGGA 58.628 33.333 0.00 0.00 0.00 3.71
2310 7541 8.371699 TCCTTTGGTTTACATAAATTTTGGAGG 58.628 33.333 0.00 0.00 0.00 4.30
2311 7542 9.423061 CTCCTTTGGTTTACATAAATTTTGGAG 57.577 33.333 0.00 0.00 0.00 3.86
2312 7543 8.371699 CCTCCTTTGGTTTACATAAATTTTGGA 58.628 33.333 0.00 0.00 0.00 3.53
2314 7545 7.119116 GGCCTCCTTTGGTTTACATAAATTTTG 59.881 37.037 0.00 0.00 0.00 2.44
2315 7546 7.017155 AGGCCTCCTTTGGTTTACATAAATTTT 59.983 33.333 0.00 0.00 0.00 1.82
2316 7547 6.500400 AGGCCTCCTTTGGTTTACATAAATTT 59.500 34.615 0.00 0.00 0.00 1.82
2317 7548 6.022958 AGGCCTCCTTTGGTTTACATAAATT 58.977 36.000 0.00 0.00 0.00 1.82
2318 7549 5.589831 AGGCCTCCTTTGGTTTACATAAAT 58.410 37.500 0.00 0.00 0.00 1.40
2382 8367 7.129457 AGTCAAGCCTCAAGATATATCACAA 57.871 36.000 15.08 0.00 0.00 3.33
2400 8385 3.741344 CCAACGACTTGTAGGAAGTCAAG 59.259 47.826 13.47 0.00 45.14 3.02
2417 8402 2.820059 TATCTCTAGCATGGCCAACG 57.180 50.000 10.96 5.09 0.00 4.10
2420 8405 1.980036 TGCATATCTCTAGCATGGCCA 59.020 47.619 8.56 8.56 32.55 5.36
2421 8406 2.775911 TGCATATCTCTAGCATGGCC 57.224 50.000 0.00 0.00 32.55 5.36
2426 8411 6.201615 CGACTTTTTGATGCATATCTCTAGCA 59.798 38.462 0.00 0.00 43.14 3.49
2427 8412 6.201806 ACGACTTTTTGATGCATATCTCTAGC 59.798 38.462 0.00 0.00 34.31 3.42
2428 8413 7.706281 ACGACTTTTTGATGCATATCTCTAG 57.294 36.000 0.00 0.00 34.31 2.43
2429 8414 7.011389 CCAACGACTTTTTGATGCATATCTCTA 59.989 37.037 0.00 0.00 34.31 2.43
2430 8415 6.183360 CCAACGACTTTTTGATGCATATCTCT 60.183 38.462 0.00 0.00 34.31 3.10
2431 8416 5.967674 CCAACGACTTTTTGATGCATATCTC 59.032 40.000 0.00 0.00 34.31 2.75
2432 8417 5.677091 GCCAACGACTTTTTGATGCATATCT 60.677 40.000 0.00 0.00 34.31 1.98
2433 8418 4.500477 GCCAACGACTTTTTGATGCATATC 59.500 41.667 0.00 0.00 0.00 1.63
2434 8419 4.423732 GCCAACGACTTTTTGATGCATAT 58.576 39.130 0.00 0.00 0.00 1.78
2435 8420 3.669290 CGCCAACGACTTTTTGATGCATA 60.669 43.478 0.00 0.00 43.93 3.14
2436 8421 2.676076 GCCAACGACTTTTTGATGCAT 58.324 42.857 0.00 0.00 0.00 3.96
2437 8422 1.599171 CGCCAACGACTTTTTGATGCA 60.599 47.619 0.00 0.00 43.93 3.96
2458 8443 2.370849 AGTGAAGGGTTGTACGTGGAAT 59.629 45.455 0.00 0.00 0.00 3.01
2467 8452 1.692411 GCCTTGAAGTGAAGGGTTGT 58.308 50.000 0.00 0.00 42.63 3.32
2495 8480 4.803088 GCTAGTGCTCACATAGAGTTTGAG 59.197 45.833 2.63 0.00 46.47 3.02
2533 8518 8.674607 CCCGTTTCTATATTAGCAGAAAAAGTT 58.325 33.333 0.93 0.00 41.20 2.66
2534 8519 7.282450 CCCCGTTTCTATATTAGCAGAAAAAGT 59.718 37.037 0.93 0.00 41.20 2.66
2535 8520 7.497909 TCCCCGTTTCTATATTAGCAGAAAAAG 59.502 37.037 0.93 0.10 41.20 2.27
2536 8521 7.340256 TCCCCGTTTCTATATTAGCAGAAAAA 58.660 34.615 0.93 0.00 41.20 1.94
2537 8522 6.891388 TCCCCGTTTCTATATTAGCAGAAAA 58.109 36.000 0.93 0.00 41.20 2.29
2538 8523 6.488769 TCCCCGTTTCTATATTAGCAGAAA 57.511 37.500 0.00 0.00 38.20 2.52
2539 8524 6.488769 TTCCCCGTTTCTATATTAGCAGAA 57.511 37.500 0.00 0.00 0.00 3.02
2540 8525 6.681729 ATTCCCCGTTTCTATATTAGCAGA 57.318 37.500 0.00 0.00 0.00 4.26
2541 8526 7.612677 AGTATTCCCCGTTTCTATATTAGCAG 58.387 38.462 0.00 0.00 0.00 4.24
2542 8527 7.549147 AGTATTCCCCGTTTCTATATTAGCA 57.451 36.000 0.00 0.00 0.00 3.49
2548 8533 8.038944 GCATCATTAGTATTCCCCGTTTCTATA 58.961 37.037 0.00 0.00 0.00 1.31
2549 8534 6.879458 GCATCATTAGTATTCCCCGTTTCTAT 59.121 38.462 0.00 0.00 0.00 1.98
2550 8535 6.183361 TGCATCATTAGTATTCCCCGTTTCTA 60.183 38.462 0.00 0.00 0.00 2.10
2551 8536 5.063880 GCATCATTAGTATTCCCCGTTTCT 58.936 41.667 0.00 0.00 0.00 2.52
2552 8537 4.819630 TGCATCATTAGTATTCCCCGTTTC 59.180 41.667 0.00 0.00 0.00 2.78
2553 8538 4.787551 TGCATCATTAGTATTCCCCGTTT 58.212 39.130 0.00 0.00 0.00 3.60
2554 8539 4.431416 TGCATCATTAGTATTCCCCGTT 57.569 40.909 0.00 0.00 0.00 4.44
2555 8540 4.431416 TTGCATCATTAGTATTCCCCGT 57.569 40.909 0.00 0.00 0.00 5.28
2556 8541 4.821805 ACTTTGCATCATTAGTATTCCCCG 59.178 41.667 0.00 0.00 0.00 5.73
2557 8542 6.072452 GCTACTTTGCATCATTAGTATTCCCC 60.072 42.308 0.00 0.00 0.00 4.81
2558 8543 6.486657 TGCTACTTTGCATCATTAGTATTCCC 59.513 38.462 0.00 0.00 38.12 3.97
2559 8544 7.227512 ACTGCTACTTTGCATCATTAGTATTCC 59.772 37.037 0.00 0.00 42.48 3.01
2560 8545 8.147642 ACTGCTACTTTGCATCATTAGTATTC 57.852 34.615 0.00 0.00 42.48 1.75
2561 8546 9.265901 CTACTGCTACTTTGCATCATTAGTATT 57.734 33.333 0.00 0.00 42.48 1.89
2562 8547 7.875041 CCTACTGCTACTTTGCATCATTAGTAT 59.125 37.037 0.00 0.00 42.48 2.12
2563 8548 7.069455 TCCTACTGCTACTTTGCATCATTAGTA 59.931 37.037 0.00 0.00 42.48 1.82
2564 8549 6.051717 CCTACTGCTACTTTGCATCATTAGT 58.948 40.000 0.00 0.00 42.48 2.24
2565 8550 6.283694 TCCTACTGCTACTTTGCATCATTAG 58.716 40.000 0.00 0.00 42.48 1.73
2566 8551 6.233905 TCCTACTGCTACTTTGCATCATTA 57.766 37.500 0.00 0.00 42.48 1.90
2567 8552 5.102953 TCCTACTGCTACTTTGCATCATT 57.897 39.130 0.00 0.00 42.48 2.57
2568 8553 4.760530 TCCTACTGCTACTTTGCATCAT 57.239 40.909 0.00 0.00 42.48 2.45
2569 8554 4.507710 CTTCCTACTGCTACTTTGCATCA 58.492 43.478 0.00 0.00 42.48 3.07
2570 8555 3.311048 GCTTCCTACTGCTACTTTGCATC 59.689 47.826 0.00 0.00 42.48 3.91
2571 8556 3.274288 GCTTCCTACTGCTACTTTGCAT 58.726 45.455 0.00 0.00 42.48 3.96
2572 8557 2.038426 TGCTTCCTACTGCTACTTTGCA 59.962 45.455 0.00 0.00 41.05 4.08
2573 8558 2.699954 TGCTTCCTACTGCTACTTTGC 58.300 47.619 0.00 0.00 0.00 3.68
2574 8559 4.997395 TCTTTGCTTCCTACTGCTACTTTG 59.003 41.667 0.00 0.00 0.00 2.77
2575 8560 5.228945 TCTTTGCTTCCTACTGCTACTTT 57.771 39.130 0.00 0.00 0.00 2.66
2576 8561 4.891992 TCTTTGCTTCCTACTGCTACTT 57.108 40.909 0.00 0.00 0.00 2.24
2577 8562 4.323104 CCTTCTTTGCTTCCTACTGCTACT 60.323 45.833 0.00 0.00 0.00 2.57
2578 8563 3.935828 CCTTCTTTGCTTCCTACTGCTAC 59.064 47.826 0.00 0.00 0.00 3.58
2579 8564 3.055094 CCCTTCTTTGCTTCCTACTGCTA 60.055 47.826 0.00 0.00 0.00 3.49
2580 8565 2.290577 CCCTTCTTTGCTTCCTACTGCT 60.291 50.000 0.00 0.00 0.00 4.24
2581 8566 2.087646 CCCTTCTTTGCTTCCTACTGC 58.912 52.381 0.00 0.00 0.00 4.40
2582 8567 3.703001 TCCCTTCTTTGCTTCCTACTG 57.297 47.619 0.00 0.00 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.