Multiple sequence alignment - TraesCS2B01G021000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G021000 chr2B 100.000 2954 0 0 1 2954 10087694 10090647 0.000000e+00 5456
1 TraesCS2B01G021000 chr2B 97.748 222 4 1 2711 2931 10095396 10095617 5.970000e-102 381
2 TraesCS2B01G021000 chr2D 91.399 1372 64 20 638 1962 1692714 1691350 0.000000e+00 1831
3 TraesCS2B01G021000 chr2D 92.213 244 16 3 2711 2954 619953287 619953047 2.820000e-90 342
4 TraesCS2B01G021000 chr2D 88.235 255 16 7 2230 2478 1688447 1688201 2.880000e-75 292
5 TraesCS2B01G021000 chr2D 91.176 204 10 3 2508 2710 1684910 1684714 1.350000e-68 270
6 TraesCS2B01G021000 chr2D 96.078 102 4 0 540 641 1692921 1692820 1.820000e-37 167
7 TraesCS2B01G021000 chr2A 90.058 1368 67 26 638 1938 1114947 1116312 0.000000e+00 1709
8 TraesCS2B01G021000 chr2A 89.441 644 29 19 1987 2617 1116395 1117012 0.000000e+00 776
9 TraesCS2B01G021000 chr2A 89.140 221 23 1 1 220 932190 931970 1.040000e-69 274
10 TraesCS2B01G021000 chr2A 88.688 221 24 1 1 220 857198 856978 4.850000e-68 268
11 TraesCS2B01G021000 chr2A 88.688 221 24 1 1 220 869104 868884 4.850000e-68 268
12 TraesCS2B01G021000 chr2A 93.567 171 10 1 638 807 1113295 1113465 1.360000e-63 254
13 TraesCS2B01G021000 chr3B 97.541 244 6 0 2711 2954 754035461 754035704 4.550000e-113 418
14 TraesCS2B01G021000 chr3B 96.429 224 7 1 2711 2933 754040452 754040675 4.650000e-98 368
15 TraesCS2B01G021000 chr6D 91.837 245 13 6 2711 2954 55319561 55319799 4.720000e-88 335
16 TraesCS2B01G021000 chr6D 92.273 220 12 4 2711 2930 55323627 55323841 1.030000e-79 307
17 TraesCS2B01G021000 chr4D 91.803 244 15 4 2711 2954 50066790 50066552 4.720000e-88 335
18 TraesCS2B01G021000 chr4D 91.703 229 12 6 2711 2937 50061873 50061650 7.950000e-81 311
19 TraesCS2B01G021000 chr7A 90.726 248 16 5 2709 2954 2797188 2796946 1.020000e-84 324
20 TraesCS2B01G021000 chrUn 88.688 221 24 1 1 220 317645394 317645614 4.850000e-68 268
21 TraesCS2B01G021000 chrUn 88.688 221 24 1 1 220 328414005 328414225 4.850000e-68 268
22 TraesCS2B01G021000 chr3A 79.583 240 18 18 760 991 743394041 743394257 3.070000e-30 143
23 TraesCS2B01G021000 chr3D 77.083 240 24 17 760 991 609828810 609829026 3.110000e-20 110


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G021000 chr2B 10087694 10090647 2953 False 5456 5456 100.000 1 2954 1 chr2B.!!$F1 2953
1 TraesCS2B01G021000 chr2D 1684714 1692921 8207 True 640 1831 91.722 540 2710 4 chr2D.!!$R2 2170
2 TraesCS2B01G021000 chr2A 1113295 1117012 3717 False 913 1709 91.022 638 2617 3 chr2A.!!$F1 1979
3 TraesCS2B01G021000 chr6D 55319561 55323841 4280 False 321 335 92.055 2711 2954 2 chr6D.!!$F1 243

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
251 252 0.101219 GGATGCGGCAATCCAGTTTC 59.899 55.0 19.78 6.91 44.85 2.78 F
1389 2494 0.249868 TTCCTCAGGACAAGTGCGTG 60.250 55.0 0.00 0.00 0.00 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1898 3003 0.299895 CAGATCTAGCACGCGCAAAG 59.700 55.0 5.73 0.0 42.27 2.77 R
2687 9777 0.321919 TGCTCATGTGCTCCACCTTC 60.322 55.0 19.60 0.0 32.73 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 8.579863 TGGAACAAATTTTGGTTTTGAACATTT 58.420 25.926 13.42 0.00 37.48 2.32
104 105 9.958234 TTGAGTATGAACAAATTTCGAATTTGA 57.042 25.926 25.90 13.29 40.42 2.69
105 106 9.958234 TGAGTATGAACAAATTTCGAATTTGAA 57.042 25.926 25.90 3.86 40.42 2.69
107 108 8.901748 AGTATGAACAAATTTCGAATTTGAACG 58.098 29.630 25.90 11.97 40.42 3.95
110 111 6.752351 TGAACAAATTTCGAATTTGAACGGAA 59.248 30.769 25.90 0.00 40.42 4.30
113 114 7.563270 ACAAATTTCGAATTTGAACGGAAATG 58.437 30.769 25.90 13.17 40.42 2.32
115 116 6.689178 ATTTCGAATTTGAACGGAAATGTG 57.311 33.333 7.67 0.00 30.83 3.21
116 117 4.153958 TCGAATTTGAACGGAAATGTGG 57.846 40.909 0.00 0.00 0.00 4.17
122 123 2.139917 TGAACGGAAATGTGGAACTCG 58.860 47.619 0.00 0.00 38.04 4.18
124 125 2.536761 ACGGAAATGTGGAACTCGAA 57.463 45.000 0.00 0.00 38.04 3.71
127 128 3.818773 ACGGAAATGTGGAACTCGAAAAT 59.181 39.130 0.00 0.00 38.04 1.82
128 129 4.277423 ACGGAAATGTGGAACTCGAAAATT 59.723 37.500 0.00 0.00 38.04 1.82
129 130 4.616802 CGGAAATGTGGAACTCGAAAATTG 59.383 41.667 0.00 0.00 38.04 2.32
131 132 5.983118 GGAAATGTGGAACTCGAAAATTGTT 59.017 36.000 0.00 0.00 38.04 2.83
132 133 6.143919 GGAAATGTGGAACTCGAAAATTGTTC 59.856 38.462 6.05 6.05 39.26 3.18
135 136 5.955488 TGTGGAACTCGAAAATTGTTCAAA 58.045 33.333 14.22 2.27 41.07 2.69
136 137 6.568869 TGTGGAACTCGAAAATTGTTCAAAT 58.431 32.000 14.22 0.00 41.07 2.32
137 138 7.708051 TGTGGAACTCGAAAATTGTTCAAATA 58.292 30.769 14.22 1.22 41.07 1.40
138 139 7.646130 TGTGGAACTCGAAAATTGTTCAAATAC 59.354 33.333 14.22 8.91 41.07 1.89
139 140 6.853872 TGGAACTCGAAAATTGTTCAAATACG 59.146 34.615 14.22 0.00 41.07 3.06
141 142 7.588488 GGAACTCGAAAATTGTTCAAATACGAA 59.412 33.333 14.22 0.00 41.07 3.85
142 143 8.844441 AACTCGAAAATTGTTCAAATACGAAA 57.156 26.923 0.00 0.00 0.00 3.46
143 144 9.458374 AACTCGAAAATTGTTCAAATACGAAAT 57.542 25.926 0.00 0.00 0.00 2.17
145 146 9.329913 CTCGAAAATTGTTCAAATACGAAATCT 57.670 29.630 0.00 0.00 0.00 2.40
146 147 9.112789 TCGAAAATTGTTCAAATACGAAATCTG 57.887 29.630 0.00 0.00 0.00 2.90
147 148 8.901748 CGAAAATTGTTCAAATACGAAATCTGT 58.098 29.630 0.00 0.00 0.00 3.41
149 150 8.742554 AAATTGTTCAAATACGAAATCTGTCC 57.257 30.769 0.00 0.00 0.00 4.02
150 151 6.869315 TTGTTCAAATACGAAATCTGTCCA 57.131 33.333 0.00 0.00 0.00 4.02
151 152 6.869315 TGTTCAAATACGAAATCTGTCCAA 57.131 33.333 0.00 0.00 0.00 3.53
152 153 7.265647 TGTTCAAATACGAAATCTGTCCAAA 57.734 32.000 0.00 0.00 0.00 3.28
153 154 7.881142 TGTTCAAATACGAAATCTGTCCAAAT 58.119 30.769 0.00 0.00 0.00 2.32
155 156 9.274065 GTTCAAATACGAAATCTGTCCAAATAC 57.726 33.333 0.00 0.00 0.00 1.89
156 157 7.680982 TCAAATACGAAATCTGTCCAAATACG 58.319 34.615 0.00 0.00 0.00 3.06
157 158 7.546316 TCAAATACGAAATCTGTCCAAATACGA 59.454 33.333 0.00 0.00 0.00 3.43
158 159 7.837202 AATACGAAATCTGTCCAAATACGAA 57.163 32.000 0.00 0.00 0.00 3.85
162 163 6.036083 ACGAAATCTGTCCAAATACGAATCTG 59.964 38.462 0.00 0.00 0.00 2.90
163 164 6.036083 CGAAATCTGTCCAAATACGAATCTGT 59.964 38.462 0.00 0.00 0.00 3.41
164 165 7.413000 CGAAATCTGTCCAAATACGAATCTGTT 60.413 37.037 0.00 0.00 0.00 3.16
166 167 5.175859 TCTGTCCAAATACGAATCTGTTCC 58.824 41.667 0.00 0.00 0.00 3.62
168 169 5.309638 TGTCCAAATACGAATCTGTTCCAA 58.690 37.500 0.00 0.00 0.00 3.53
169 170 5.765677 TGTCCAAATACGAATCTGTTCCAAA 59.234 36.000 0.00 0.00 0.00 3.28
171 172 7.040062 TGTCCAAATACGAATCTGTTCCAAATT 60.040 33.333 0.00 0.00 0.00 1.82
172 173 7.812669 GTCCAAATACGAATCTGTTCCAAATTT 59.187 33.333 0.00 0.00 0.00 1.82
173 174 7.812191 TCCAAATACGAATCTGTTCCAAATTTG 59.188 33.333 11.40 11.40 35.96 2.32
188 189 6.303021 CCAAATTTGGTTTGTTCAATCCTG 57.697 37.500 26.34 0.00 44.58 3.86
190 191 5.885449 AATTTGGTTTGTTCAATCCTGGA 57.115 34.783 0.00 0.00 0.00 3.86
191 192 4.935352 TTTGGTTTGTTCAATCCTGGAG 57.065 40.909 1.52 0.00 0.00 3.86
204 205 2.696775 TCCTGGAGGAACCTTAACACA 58.303 47.619 0.00 0.00 42.18 3.72
206 207 3.655777 TCCTGGAGGAACCTTAACACAAT 59.344 43.478 0.00 0.00 42.18 2.71
208 209 4.010349 CTGGAGGAACCTTAACACAATCC 58.990 47.826 0.00 0.00 39.86 3.01
209 210 3.396276 TGGAGGAACCTTAACACAATCCA 59.604 43.478 0.00 0.00 39.86 3.41
210 211 4.141135 TGGAGGAACCTTAACACAATCCAA 60.141 41.667 0.00 0.00 39.86 3.53
211 212 5.016831 GGAGGAACCTTAACACAATCCAAT 58.983 41.667 0.00 0.00 35.41 3.16
212 213 5.125578 GGAGGAACCTTAACACAATCCAATC 59.874 44.000 0.00 0.00 35.41 2.67
213 214 5.892348 AGGAACCTTAACACAATCCAATCT 58.108 37.500 0.00 0.00 0.00 2.40
214 215 5.711976 AGGAACCTTAACACAATCCAATCTG 59.288 40.000 0.00 0.00 0.00 2.90
215 216 5.710099 GGAACCTTAACACAATCCAATCTGA 59.290 40.000 0.00 0.00 0.00 3.27
217 218 7.093771 GGAACCTTAACACAATCCAATCTGAAT 60.094 37.037 0.00 0.00 0.00 2.57
218 219 7.161773 ACCTTAACACAATCCAATCTGAATG 57.838 36.000 0.00 0.00 0.00 2.67
219 220 6.721208 ACCTTAACACAATCCAATCTGAATGT 59.279 34.615 0.00 0.00 0.00 2.71
221 222 5.395682 AACACAATCCAATCTGAATGTGG 57.604 39.130 12.34 5.85 41.74 4.17
222 223 4.410099 ACACAATCCAATCTGAATGTGGT 58.590 39.130 12.34 0.00 41.74 4.16
223 224 4.834496 ACACAATCCAATCTGAATGTGGTT 59.166 37.500 12.34 0.00 41.74 3.67
224 225 5.305128 ACACAATCCAATCTGAATGTGGTTT 59.695 36.000 12.34 2.17 41.74 3.27
225 226 5.865552 CACAATCCAATCTGAATGTGGTTTC 59.134 40.000 2.12 0.00 35.67 2.78
227 228 6.041865 ACAATCCAATCTGAATGTGGTTTCAA 59.958 34.615 5.60 0.00 35.31 2.69
228 229 6.669125 ATCCAATCTGAATGTGGTTTCAAA 57.331 33.333 5.60 0.00 35.31 2.69
229 230 6.669125 TCCAATCTGAATGTGGTTTCAAAT 57.331 33.333 5.60 0.00 35.31 2.32
231 232 7.507829 TCCAATCTGAATGTGGTTTCAAATTT 58.492 30.769 5.60 0.00 35.31 1.82
232 233 7.441760 TCCAATCTGAATGTGGTTTCAAATTTG 59.558 33.333 12.15 12.15 35.31 2.32
234 235 6.477053 TCTGAATGTGGTTTCAAATTTGGA 57.523 33.333 17.90 6.72 35.31 3.53
236 237 6.930164 TCTGAATGTGGTTTCAAATTTGGATG 59.070 34.615 17.90 0.00 35.31 3.51
237 238 5.469421 TGAATGTGGTTTCAAATTTGGATGC 59.531 36.000 17.90 5.77 31.30 3.91
238 239 3.388308 TGTGGTTTCAAATTTGGATGCG 58.612 40.909 17.90 0.00 0.00 4.73
239 240 2.736192 GTGGTTTCAAATTTGGATGCGG 59.264 45.455 17.90 0.00 0.00 5.69
241 242 2.411904 GTTTCAAATTTGGATGCGGCA 58.588 42.857 17.90 4.58 0.00 5.69
244 245 2.891112 TCAAATTTGGATGCGGCAATC 58.109 42.857 17.90 5.33 0.00 2.67
245 246 1.935199 CAAATTTGGATGCGGCAATCC 59.065 47.619 6.82 14.71 45.57 3.01
249 250 3.924507 GGATGCGGCAATCCAGTT 58.075 55.556 19.78 0.00 44.85 3.16
251 252 0.101219 GGATGCGGCAATCCAGTTTC 59.899 55.000 19.78 6.91 44.85 2.78
254 255 1.255882 TGCGGCAATCCAGTTTCATT 58.744 45.000 0.00 0.00 0.00 2.57
255 256 1.617850 TGCGGCAATCCAGTTTCATTT 59.382 42.857 0.00 0.00 0.00 2.32
256 257 2.036992 TGCGGCAATCCAGTTTCATTTT 59.963 40.909 0.00 0.00 0.00 1.82
257 258 2.667969 GCGGCAATCCAGTTTCATTTTC 59.332 45.455 0.00 0.00 0.00 2.29
259 260 4.497300 CGGCAATCCAGTTTCATTTTCAT 58.503 39.130 0.00 0.00 0.00 2.57
261 262 5.516339 CGGCAATCCAGTTTCATTTTCATAC 59.484 40.000 0.00 0.00 0.00 2.39
266 267 7.636150 ATCCAGTTTCATTTTCATACTCCAG 57.364 36.000 0.00 0.00 0.00 3.86
267 268 6.542821 TCCAGTTTCATTTTCATACTCCAGT 58.457 36.000 0.00 0.00 0.00 4.00
268 269 6.655003 TCCAGTTTCATTTTCATACTCCAGTC 59.345 38.462 0.00 0.00 0.00 3.51
269 270 6.430925 CCAGTTTCATTTTCATACTCCAGTCA 59.569 38.462 0.00 0.00 0.00 3.41
270 271 7.361542 CCAGTTTCATTTTCATACTCCAGTCAG 60.362 40.741 0.00 0.00 0.00 3.51
273 274 6.114187 TCATTTTCATACTCCAGTCAGTGT 57.886 37.500 0.00 0.00 0.00 3.55
274 275 7.239763 TCATTTTCATACTCCAGTCAGTGTA 57.760 36.000 0.00 0.00 0.00 2.90
275 276 7.323420 TCATTTTCATACTCCAGTCAGTGTAG 58.677 38.462 0.00 0.00 0.00 2.74
276 277 6.665992 TTTTCATACTCCAGTCAGTGTAGT 57.334 37.500 0.00 0.00 0.00 2.73
278 279 4.663334 TCATACTCCAGTCAGTGTAGTGT 58.337 43.478 0.00 0.00 0.00 3.55
279 280 5.812286 TCATACTCCAGTCAGTGTAGTGTA 58.188 41.667 0.00 0.00 0.00 2.90
280 281 6.424032 TCATACTCCAGTCAGTGTAGTGTAT 58.576 40.000 0.00 0.00 0.00 2.29
281 282 7.571025 TCATACTCCAGTCAGTGTAGTGTATA 58.429 38.462 0.00 0.00 0.00 1.47
283 284 6.761099 ACTCCAGTCAGTGTAGTGTATAAG 57.239 41.667 0.00 0.00 0.00 1.73
284 285 6.246919 ACTCCAGTCAGTGTAGTGTATAAGT 58.753 40.000 0.00 0.00 0.00 2.24
285 286 6.720288 ACTCCAGTCAGTGTAGTGTATAAGTT 59.280 38.462 0.00 0.00 0.00 2.66
286 287 7.232941 ACTCCAGTCAGTGTAGTGTATAAGTTT 59.767 37.037 0.00 0.00 0.00 2.66
288 289 8.086522 TCCAGTCAGTGTAGTGTATAAGTTTTC 58.913 37.037 0.00 0.00 0.00 2.29
289 290 7.061905 CCAGTCAGTGTAGTGTATAAGTTTTCG 59.938 40.741 0.00 0.00 0.00 3.46
291 292 5.570206 TCAGTGTAGTGTATAAGTTTTCGCG 59.430 40.000 0.00 0.00 0.00 5.87
292 293 5.344128 CAGTGTAGTGTATAAGTTTTCGCGT 59.656 40.000 5.77 0.00 0.00 6.01
293 294 5.922544 AGTGTAGTGTATAAGTTTTCGCGTT 59.077 36.000 5.77 0.00 0.00 4.84
294 295 6.088616 AGTGTAGTGTATAAGTTTTCGCGTTC 59.911 38.462 5.77 0.00 0.00 3.95
295 296 4.557276 AGTGTATAAGTTTTCGCGTTCG 57.443 40.909 5.77 0.00 0.00 3.95
297 298 4.322804 AGTGTATAAGTTTTCGCGTTCGAG 59.677 41.667 5.77 0.00 46.34 4.04
298 299 4.089065 GTGTATAAGTTTTCGCGTTCGAGT 59.911 41.667 5.77 0.00 46.34 4.18
299 300 3.967080 ATAAGTTTTCGCGTTCGAGTC 57.033 42.857 5.77 0.00 46.34 3.36
301 302 0.942884 AGTTTTCGCGTTCGAGTCCC 60.943 55.000 5.77 0.00 46.34 4.46
303 304 0.665369 TTTTCGCGTTCGAGTCCCTC 60.665 55.000 5.77 0.00 46.34 4.30
313 314 2.680352 AGTCCCTCGTCCGCACAT 60.680 61.111 0.00 0.00 0.00 3.21
314 315 2.227089 GAGTCCCTCGTCCGCACATT 62.227 60.000 0.00 0.00 0.00 2.71
315 316 1.375523 GTCCCTCGTCCGCACATTT 60.376 57.895 0.00 0.00 0.00 2.32
316 317 1.375396 TCCCTCGTCCGCACATTTG 60.375 57.895 0.00 0.00 0.00 2.32
317 318 2.480555 CCTCGTCCGCACATTTGC 59.519 61.111 0.00 0.00 46.21 3.68
325 326 2.872925 GCACATTTGCTGCTCGCG 60.873 61.111 0.00 0.00 46.17 5.87
326 327 2.202388 CACATTTGCTGCTCGCGG 60.202 61.111 6.13 0.00 43.27 6.46
334 335 4.140599 CTGCTCGCGGCTTCCTCT 62.141 66.667 18.14 0.00 42.39 3.69
335 336 2.754254 TGCTCGCGGCTTCCTCTA 60.754 61.111 18.14 0.00 42.39 2.43
336 337 2.081425 CTGCTCGCGGCTTCCTCTAT 62.081 60.000 18.14 0.00 42.39 1.98
338 339 0.314302 GCTCGCGGCTTCCTCTATAA 59.686 55.000 6.13 0.00 38.06 0.98
339 340 1.667467 GCTCGCGGCTTCCTCTATAAG 60.667 57.143 6.13 0.00 38.06 1.73
340 341 1.880675 CTCGCGGCTTCCTCTATAAGA 59.119 52.381 6.13 0.00 0.00 2.10
341 342 2.293677 CTCGCGGCTTCCTCTATAAGAA 59.706 50.000 6.13 0.00 0.00 2.52
343 344 4.077108 TCGCGGCTTCCTCTATAAGAATA 58.923 43.478 6.13 0.00 0.00 1.75
344 345 4.705507 TCGCGGCTTCCTCTATAAGAATAT 59.294 41.667 6.13 0.00 0.00 1.28
345 346 4.800993 CGCGGCTTCCTCTATAAGAATATG 59.199 45.833 0.00 0.00 0.00 1.78
346 347 5.112686 GCGGCTTCCTCTATAAGAATATGG 58.887 45.833 0.00 0.00 0.00 2.74
347 348 5.112686 CGGCTTCCTCTATAAGAATATGGC 58.887 45.833 0.00 0.00 0.00 4.40
348 349 5.432645 GGCTTCCTCTATAAGAATATGGCC 58.567 45.833 0.00 0.00 0.00 5.36
350 351 6.112058 GCTTCCTCTATAAGAATATGGCCTG 58.888 44.000 3.32 0.00 0.00 4.85
351 352 6.627087 TTCCTCTATAAGAATATGGCCTGG 57.373 41.667 3.32 0.00 0.00 4.45
353 354 4.785376 CCTCTATAAGAATATGGCCTGGGT 59.215 45.833 3.32 0.00 0.00 4.51
354 355 5.338708 CCTCTATAAGAATATGGCCTGGGTG 60.339 48.000 3.32 0.00 0.00 4.61
356 357 0.929244 AAGAATATGGCCTGGGTGCT 59.071 50.000 3.32 0.00 0.00 4.40
357 358 1.819753 AGAATATGGCCTGGGTGCTA 58.180 50.000 3.32 0.00 0.00 3.49
358 359 1.701847 AGAATATGGCCTGGGTGCTAG 59.298 52.381 3.32 0.00 0.00 3.42
360 361 0.767375 ATATGGCCTGGGTGCTAGTG 59.233 55.000 3.32 0.00 0.00 2.74
361 362 0.326143 TATGGCCTGGGTGCTAGTGA 60.326 55.000 3.32 0.00 0.00 3.41
362 363 1.630126 ATGGCCTGGGTGCTAGTGAG 61.630 60.000 3.32 0.00 0.00 3.51
374 375 1.786937 CTAGTGAGCAGGGGTCTGAT 58.213 55.000 0.00 0.00 43.04 2.90
375 376 2.950781 CTAGTGAGCAGGGGTCTGATA 58.049 52.381 0.00 0.00 40.07 2.15
376 377 2.485966 AGTGAGCAGGGGTCTGATAT 57.514 50.000 0.00 0.00 40.07 1.63
377 378 2.769209 AGTGAGCAGGGGTCTGATATT 58.231 47.619 0.00 0.00 40.07 1.28
378 379 3.118531 AGTGAGCAGGGGTCTGATATTT 58.881 45.455 0.00 0.00 40.07 1.40
379 380 3.525199 AGTGAGCAGGGGTCTGATATTTT 59.475 43.478 0.00 0.00 40.07 1.82
410 411 9.026121 AGTGTATCAGTATCAGTTTCAGTTAGT 57.974 33.333 0.00 0.00 0.00 2.24
411 412 9.077674 GTGTATCAGTATCAGTTTCAGTTAGTG 57.922 37.037 0.00 0.00 0.00 2.74
412 413 8.803235 TGTATCAGTATCAGTTTCAGTTAGTGT 58.197 33.333 0.00 0.00 0.00 3.55
414 415 7.526142 TCAGTATCAGTTTCAGTTAGTGTCT 57.474 36.000 0.00 0.00 0.00 3.41
415 416 7.594714 TCAGTATCAGTTTCAGTTAGTGTCTC 58.405 38.462 0.00 0.00 0.00 3.36
416 417 7.448777 TCAGTATCAGTTTCAGTTAGTGTCTCT 59.551 37.037 0.00 0.00 0.00 3.10
417 418 8.731605 CAGTATCAGTTTCAGTTAGTGTCTCTA 58.268 37.037 0.00 0.00 0.00 2.43
418 419 9.469097 AGTATCAGTTTCAGTTAGTGTCTCTAT 57.531 33.333 0.00 0.00 0.00 1.98
419 420 9.724839 GTATCAGTTTCAGTTAGTGTCTCTATC 57.275 37.037 0.00 0.00 0.00 2.08
420 421 7.761038 TCAGTTTCAGTTAGTGTCTCTATCA 57.239 36.000 0.00 0.00 0.00 2.15
423 424 9.261180 CAGTTTCAGTTAGTGTCTCTATCAAAA 57.739 33.333 0.00 0.00 0.00 2.44
427 428 9.996554 TTCAGTTAGTGTCTCTATCAAAATCAA 57.003 29.630 0.00 0.00 0.00 2.57
428 429 9.645059 TCAGTTAGTGTCTCTATCAAAATCAAG 57.355 33.333 0.00 0.00 0.00 3.02
429 430 8.877779 CAGTTAGTGTCTCTATCAAAATCAAGG 58.122 37.037 0.00 0.00 0.00 3.61
430 431 8.816894 AGTTAGTGTCTCTATCAAAATCAAGGA 58.183 33.333 0.00 0.00 0.00 3.36
431 432 9.092876 GTTAGTGTCTCTATCAAAATCAAGGAG 57.907 37.037 0.00 0.00 0.00 3.69
433 434 7.102346 AGTGTCTCTATCAAAATCAAGGAGTG 58.898 38.462 0.00 0.00 0.00 3.51
434 435 5.877012 TGTCTCTATCAAAATCAAGGAGTGC 59.123 40.000 0.00 0.00 0.00 4.40
436 437 6.597280 GTCTCTATCAAAATCAAGGAGTGCTT 59.403 38.462 0.00 0.00 0.00 3.91
438 439 6.475504 TCTATCAAAATCAAGGAGTGCTTCA 58.524 36.000 0.00 0.00 0.00 3.02
439 440 5.640189 ATCAAAATCAAGGAGTGCTTCAG 57.360 39.130 0.00 0.00 0.00 3.02
440 441 3.822735 TCAAAATCAAGGAGTGCTTCAGG 59.177 43.478 0.00 0.00 0.00 3.86
442 443 4.640771 AAATCAAGGAGTGCTTCAGGTA 57.359 40.909 0.00 0.00 0.00 3.08
443 444 4.851639 AATCAAGGAGTGCTTCAGGTAT 57.148 40.909 0.00 0.00 0.00 2.73
444 445 3.895232 TCAAGGAGTGCTTCAGGTATC 57.105 47.619 0.00 0.00 0.00 2.24
446 447 3.196469 TCAAGGAGTGCTTCAGGTATCAG 59.804 47.826 0.00 0.00 0.00 2.90
448 449 3.177228 AGGAGTGCTTCAGGTATCAGTT 58.823 45.455 0.00 0.00 0.00 3.16
449 450 3.584848 AGGAGTGCTTCAGGTATCAGTTT 59.415 43.478 0.00 0.00 0.00 2.66
450 451 3.935828 GGAGTGCTTCAGGTATCAGTTTC 59.064 47.826 0.00 0.00 0.00 2.78
451 452 4.563580 GGAGTGCTTCAGGTATCAGTTTCA 60.564 45.833 0.00 0.00 0.00 2.69
453 454 4.040952 AGTGCTTCAGGTATCAGTTTCAGT 59.959 41.667 0.00 0.00 0.00 3.41
456 457 6.091441 GTGCTTCAGGTATCAGTTTCAGTTAG 59.909 42.308 0.00 0.00 0.00 2.34
458 459 6.091441 GCTTCAGGTATCAGTTTCAGTTAGTG 59.909 42.308 0.00 0.00 0.00 2.74
460 461 6.688578 TCAGGTATCAGTTTCAGTTAGTGTC 58.311 40.000 0.00 0.00 0.00 3.67
462 463 7.668469 TCAGGTATCAGTTTCAGTTAGTGTCTA 59.332 37.037 0.00 0.00 0.00 2.59
463 464 8.470805 CAGGTATCAGTTTCAGTTAGTGTCTAT 58.529 37.037 0.00 0.00 0.00 1.98
464 465 8.688151 AGGTATCAGTTTCAGTTAGTGTCTATC 58.312 37.037 0.00 0.00 0.00 2.08
465 466 8.467598 GGTATCAGTTTCAGTTAGTGTCTATCA 58.532 37.037 0.00 0.00 0.00 2.15
466 467 9.856488 GTATCAGTTTCAGTTAGTGTCTATCAA 57.144 33.333 0.00 0.00 0.00 2.57
468 469 9.778741 ATCAGTTTCAGTTAGTGTCTATCAAAA 57.221 29.630 0.00 0.00 0.00 2.44
469 470 9.778741 TCAGTTTCAGTTAGTGTCTATCAAAAT 57.221 29.630 0.00 0.00 0.00 1.82
471 472 9.778741 AGTTTCAGTTAGTGTCTATCAAAATCA 57.221 29.630 0.00 0.00 0.00 2.57
481 482 9.778741 AGTGTCTATCAAAATCAGTTAGTTTCA 57.221 29.630 0.00 0.00 0.00 2.69
483 484 9.778741 TGTCTATCAAAATCAGTTAGTTTCAGT 57.221 29.630 0.00 0.00 0.00 3.41
488 489 9.956720 ATCAAAATCAGTTAGTTTCAGTTTCAG 57.043 29.630 0.00 0.00 0.00 3.02
489 490 8.956426 TCAAAATCAGTTAGTTTCAGTTTCAGT 58.044 29.630 0.00 0.00 0.00 3.41
509 510 6.507900 TCAGTATGAGCTGTAATAGCAGTTC 58.492 40.000 0.00 3.54 46.85 3.01
524 525 7.928307 ATAGCAGTTCAATTTCAGTACACAT 57.072 32.000 0.00 0.00 0.00 3.21
526 527 7.133891 AGCAGTTCAATTTCAGTACACATAC 57.866 36.000 0.00 0.00 0.00 2.39
529 530 7.148705 GCAGTTCAATTTCAGTACACATACGTA 60.149 37.037 0.00 0.00 36.33 3.57
530 531 8.160342 CAGTTCAATTTCAGTACACATACGTAC 58.840 37.037 0.00 0.00 41.75 3.67
560 561 7.913821 TCTTGTCTGTTGCTAATATACGTACAG 59.086 37.037 0.00 0.00 34.38 2.74
641 642 4.017808 GAGGAGAGTAGTACAAGGAGCAA 58.982 47.826 2.52 0.00 0.00 3.91
657 1673 3.877508 GGAGCAAATTCGCTAGTTGGTAT 59.122 43.478 0.00 0.00 42.00 2.73
892 1940 1.371022 CGATCGATCGTCCTGCTGG 60.371 63.158 33.95 8.07 44.74 4.85
911 1959 1.066430 GGCTTGTAATCCACGACAGGA 60.066 52.381 0.00 0.00 43.01 3.86
921 1969 2.233922 TCCACGACAGGATTCCTTTCTC 59.766 50.000 15.21 4.93 28.89 2.87
922 1970 2.234908 CCACGACAGGATTCCTTTCTCT 59.765 50.000 15.21 0.00 28.89 3.10
923 1971 3.307059 CCACGACAGGATTCCTTTCTCTT 60.307 47.826 15.21 0.00 28.89 2.85
924 1972 4.081642 CCACGACAGGATTCCTTTCTCTTA 60.082 45.833 15.21 0.00 28.89 2.10
925 1973 5.395768 CCACGACAGGATTCCTTTCTCTTAT 60.396 44.000 15.21 0.00 28.89 1.73
927 1975 7.437748 CACGACAGGATTCCTTTCTCTTATAT 58.562 38.462 15.21 0.00 28.89 0.86
928 1976 8.577296 CACGACAGGATTCCTTTCTCTTATATA 58.423 37.037 15.21 0.00 28.89 0.86
929 1977 9.315363 ACGACAGGATTCCTTTCTCTTATATAT 57.685 33.333 15.21 0.00 28.89 0.86
960 2032 4.643930 TCCCCCTGGAGAGTAGGA 57.356 61.111 0.00 0.00 37.52 2.94
962 2034 0.338814 TCCCCCTGGAGAGTAGGAAC 59.661 60.000 0.00 0.00 37.52 3.62
963 2035 0.691413 CCCCCTGGAGAGTAGGAACC 60.691 65.000 0.00 0.00 37.52 3.62
965 2037 1.490574 CCCTGGAGAGTAGGAACCAG 58.509 60.000 0.00 0.00 46.37 4.00
1033 2109 3.217599 TCCGTCATTCGACTCTTCTTG 57.782 47.619 0.00 0.00 42.86 3.02
1042 2118 8.185505 GTCATTCGACTCTTCTTGTTCTACTAT 58.814 37.037 0.00 0.00 39.22 2.12
1344 2433 2.808919 TCGACCATCCTCTCTGACTTT 58.191 47.619 0.00 0.00 0.00 2.66
1346 2435 3.056536 TCGACCATCCTCTCTGACTTTTG 60.057 47.826 0.00 0.00 0.00 2.44
1347 2436 3.006247 GACCATCCTCTCTGACTTTTGC 58.994 50.000 0.00 0.00 0.00 3.68
1358 2461 9.780413 CCTCTCTGACTTTTGCTTTATTTATTC 57.220 33.333 0.00 0.00 0.00 1.75
1389 2494 0.249868 TTCCTCAGGACAAGTGCGTG 60.250 55.000 0.00 0.00 0.00 5.34
1521 2626 2.121009 GAGAATTACGGCGAGCTTCTC 58.879 52.381 23.07 23.07 36.24 2.87
1714 2819 1.827789 GTCAGCAACAGGTTGGCCA 60.828 57.895 0.00 0.00 40.74 5.36
1735 2840 0.487325 TCACTGGGAGGAAGAGACCA 59.513 55.000 0.00 0.00 0.00 4.02
1746 2851 2.419297 GGAAGAGACCAACATGCTCGAT 60.419 50.000 0.00 0.00 33.98 3.59
1756 2861 0.656259 CATGCTCGATGTTGAGGCAG 59.344 55.000 0.00 0.00 36.47 4.85
1758 2863 0.321346 TGCTCGATGTTGAGGCAGAA 59.679 50.000 0.00 0.00 36.47 3.02
1776 2881 4.651778 CAGAATTCTGTGTAAACTGGGGA 58.348 43.478 24.65 0.00 39.09 4.81
1846 2951 2.194868 GGGGAAGGGGGCATTACG 59.805 66.667 0.00 0.00 0.00 3.18
1898 3003 3.567585 GGAATTAAGAGCCCAAGAGATGC 59.432 47.826 0.00 0.00 0.00 3.91
1902 3007 2.125773 AGAGCCCAAGAGATGCTTTG 57.874 50.000 0.00 0.00 34.99 2.77
1914 3019 1.091771 ATGCTTTGCGCGTGCTAGAT 61.092 50.000 23.16 11.24 43.27 1.98
1938 3046 1.668826 TGGTGAGGCCAAGAGGTTAT 58.331 50.000 5.01 0.00 45.94 1.89
1940 3048 2.771943 TGGTGAGGCCAAGAGGTTATAG 59.228 50.000 5.01 0.00 45.94 1.31
1957 3065 6.610425 AGGTTATAGTGTCCCCAACTAACTAG 59.390 42.308 0.00 0.00 33.97 2.57
1962 3070 4.527427 AGTGTCCCCAACTAACTAGAAGAC 59.473 45.833 0.00 0.00 0.00 3.01
1963 3071 3.508793 TGTCCCCAACTAACTAGAAGACG 59.491 47.826 0.00 0.00 0.00 4.18
1965 3073 4.702131 GTCCCCAACTAACTAGAAGACGTA 59.298 45.833 0.00 0.00 0.00 3.57
1966 3074 4.702131 TCCCCAACTAACTAGAAGACGTAC 59.298 45.833 0.00 0.00 0.00 3.67
1967 3075 4.704057 CCCCAACTAACTAGAAGACGTACT 59.296 45.833 0.00 0.00 0.00 2.73
1968 3076 5.882557 CCCCAACTAACTAGAAGACGTACTA 59.117 44.000 0.00 0.00 0.00 1.82
1972 3080 7.010923 CCAACTAACTAGAAGACGTACTACGAT 59.989 40.741 15.49 0.82 46.05 3.73
1973 3081 8.386606 CAACTAACTAGAAGACGTACTACGATT 58.613 37.037 15.49 9.14 46.05 3.34
1974 3082 8.125728 ACTAACTAGAAGACGTACTACGATTC 57.874 38.462 15.49 16.22 46.05 2.52
1978 3086 6.815641 ACTAGAAGACGTACTACGATTCAAGA 59.184 38.462 21.97 12.43 46.05 3.02
1979 3087 5.867166 AGAAGACGTACTACGATTCAAGAC 58.133 41.667 21.97 6.52 46.05 3.01
1981 3089 5.618056 AGACGTACTACGATTCAAGACAA 57.382 39.130 15.49 0.00 46.05 3.18
1982 3090 5.388944 AGACGTACTACGATTCAAGACAAC 58.611 41.667 15.49 0.00 46.05 3.32
1983 3091 5.049198 AGACGTACTACGATTCAAGACAACA 60.049 40.000 15.49 0.00 46.05 3.33
1984 3092 5.522456 ACGTACTACGATTCAAGACAACAA 58.478 37.500 15.49 0.00 46.05 2.83
1985 3093 5.978919 ACGTACTACGATTCAAGACAACAAA 59.021 36.000 15.49 0.00 46.05 2.83
1999 3141 5.960704 AGACAACAAATTAGGGTTTAGGGT 58.039 37.500 0.00 0.00 0.00 4.34
2001 3143 7.705700 AGACAACAAATTAGGGTTTAGGGTAT 58.294 34.615 0.00 0.00 0.00 2.73
2057 3417 6.237901 TGTTCAAGGTCTGTAATGCTGTAAT 58.762 36.000 0.00 0.00 0.00 1.89
2063 3423 6.893583 AGGTCTGTAATGCTGTAATGAAGAT 58.106 36.000 0.00 0.00 0.00 2.40
2065 3425 7.281774 AGGTCTGTAATGCTGTAATGAAGATTG 59.718 37.037 0.00 0.00 0.00 2.67
2148 5707 5.551233 TGAGCATTATAGTGTTAGGCATCC 58.449 41.667 0.00 0.00 0.00 3.51
2154 5713 6.720112 TTATAGTGTTAGGCATCCGTTAGT 57.280 37.500 0.00 0.00 0.00 2.24
2158 5717 2.093869 TGTTAGGCATCCGTTAGTCACC 60.094 50.000 0.00 0.00 0.00 4.02
2159 5718 0.742505 TAGGCATCCGTTAGTCACCG 59.257 55.000 0.00 0.00 0.00 4.94
2160 5719 2.171725 GGCATCCGTTAGTCACCGC 61.172 63.158 0.00 0.00 0.00 5.68
2161 5720 2.514013 GCATCCGTTAGTCACCGCG 61.514 63.158 0.00 0.00 0.00 6.46
2202 5761 1.152839 CTCCTCCTCCTCCTCCGTC 60.153 68.421 0.00 0.00 0.00 4.79
2238 6058 8.887717 GTTTCATATCTGAATTTGTGCTACTCT 58.112 33.333 0.00 0.00 40.95 3.24
2250 6070 4.074259 TGTGCTACTCTTGCAATCACAAT 58.926 39.130 0.00 0.00 42.41 2.71
2260 6080 6.457355 TCTTGCAATCACAATTGTGCTAAAT 58.543 32.000 29.84 17.21 45.25 1.40
2261 6081 6.930164 TCTTGCAATCACAATTGTGCTAAATT 59.070 30.769 29.84 21.38 45.25 1.82
2262 6082 8.087136 TCTTGCAATCACAATTGTGCTAAATTA 58.913 29.630 29.84 14.01 45.25 1.40
2263 6083 8.599055 TTGCAATCACAATTGTGCTAAATTAA 57.401 26.923 29.84 14.79 45.25 1.40
2264 6084 8.774890 TGCAATCACAATTGTGCTAAATTAAT 57.225 26.923 29.84 14.89 45.25 1.40
2389 6214 3.499918 AGTTTGGATCAGCAAAGTTCTCG 59.500 43.478 0.00 0.00 0.00 4.04
2646 9736 5.457686 TCTATTTCTTAGGCGGGGTACTAA 58.542 41.667 0.00 0.00 0.00 2.24
2647 9737 4.684484 ATTTCTTAGGCGGGGTACTAAG 57.316 45.455 0.00 0.00 44.66 2.18
2648 9738 2.834638 TCTTAGGCGGGGTACTAAGT 57.165 50.000 10.24 0.00 44.03 2.24
2649 9739 3.951563 TCTTAGGCGGGGTACTAAGTA 57.048 47.619 10.24 0.00 44.03 2.24
2670 9760 8.488308 AAGTACTAGTTTCCTTACTCCTTTCA 57.512 34.615 0.00 0.00 0.00 2.69
2678 9768 8.437575 AGTTTCCTTACTCCTTTCATTGACTAA 58.562 33.333 0.00 0.00 0.00 2.24
2684 9774 5.491982 ACTCCTTTCATTGACTAATCGCTT 58.508 37.500 0.00 0.00 0.00 4.68
2687 9777 4.260375 CCTTTCATTGACTAATCGCTTCCG 60.260 45.833 0.00 0.00 0.00 4.30
2710 9800 1.681166 GGTGGAGCACATGAGCATCTT 60.681 52.381 17.61 0.00 35.86 2.40
2711 9801 1.400846 GTGGAGCACATGAGCATCTTG 59.599 52.381 17.61 0.00 44.95 3.02
2754 9844 3.506059 CTCATACAGAGGGCCGCGG 62.506 68.421 24.05 24.05 40.84 6.46
2755 9845 3.849951 CATACAGAGGGCCGCGGT 61.850 66.667 28.70 17.65 0.00 5.68
2756 9846 2.123597 ATACAGAGGGCCGCGGTA 60.124 61.111 28.70 20.77 0.00 4.02
2758 9848 0.251474 ATACAGAGGGCCGCGGTATA 60.251 55.000 26.20 8.23 0.00 1.47
2771 9861 6.038936 GGGCCGCGGTATATTTATATTGATTT 59.961 38.462 28.70 0.00 0.00 2.17
2817 9907 7.695869 GGTTACAACCGAAGAGATATTACAG 57.304 40.000 0.00 0.00 39.66 2.74
2847 9937 7.147461 GGTTTTACAGGAGGGATAAGAGAGAAT 60.147 40.741 0.00 0.00 0.00 2.40
2848 9938 8.925338 GTTTTACAGGAGGGATAAGAGAGAATA 58.075 37.037 0.00 0.00 0.00 1.75
2851 9941 7.368198 ACAGGAGGGATAAGAGAGAATAAAC 57.632 40.000 0.00 0.00 0.00 2.01
2853 9943 7.070571 ACAGGAGGGATAAGAGAGAATAAACAG 59.929 40.741 0.00 0.00 0.00 3.16
2856 9946 7.929245 GGAGGGATAAGAGAGAATAAACAGAAC 59.071 40.741 0.00 0.00 0.00 3.01
2857 9947 8.380742 AGGGATAAGAGAGAATAAACAGAACA 57.619 34.615 0.00 0.00 0.00 3.18
2858 9948 8.826765 AGGGATAAGAGAGAATAAACAGAACAA 58.173 33.333 0.00 0.00 0.00 2.83
2859 9949 9.103861 GGGATAAGAGAGAATAAACAGAACAAG 57.896 37.037 0.00 0.00 0.00 3.16
2860 9950 9.877178 GGATAAGAGAGAATAAACAGAACAAGA 57.123 33.333 0.00 0.00 0.00 3.02
2865 9955 9.261035 AGAGAGAATAAACAGAACAAGATCCTA 57.739 33.333 0.00 0.00 0.00 2.94
2901 9991 3.055719 GCGCACAAGGCAGCCTAA 61.056 61.111 16.56 0.00 45.17 2.69
2902 9992 3.044059 GCGCACAAGGCAGCCTAAG 62.044 63.158 16.56 13.47 45.17 2.18
2903 9993 1.375908 CGCACAAGGCAGCCTAAGA 60.376 57.895 16.56 0.00 45.17 2.10
2904 9994 1.364626 CGCACAAGGCAGCCTAAGAG 61.365 60.000 16.56 10.53 45.17 2.85
2905 9995 1.028868 GCACAAGGCAGCCTAAGAGG 61.029 60.000 16.56 9.67 43.97 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 8.887717 TGTTCCAAATCGAAAATTGTTCAAAAT 58.112 25.926 0.00 0.00 0.00 1.82
16 17 7.834068 TTGTTCCAAATCGAAAATTGTTCAA 57.166 28.000 0.00 0.00 0.00 2.69
17 18 7.834068 TTTGTTCCAAATCGAAAATTGTTCA 57.166 28.000 0.00 0.00 0.00 3.18
18 19 9.715123 AAATTTGTTCCAAATCGAAAATTGTTC 57.285 25.926 2.92 0.00 0.00 3.18
20 21 9.500864 CAAAATTTGTTCCAAATCGAAAATTGT 57.499 25.926 2.92 0.00 0.00 2.71
21 22 8.956014 CCAAAATTTGTTCCAAATCGAAAATTG 58.044 29.630 4.92 0.00 0.00 2.32
23 24 8.219546 ACCAAAATTTGTTCCAAATCGAAAAT 57.780 26.923 4.92 0.00 0.00 1.82
26 27 7.617041 AAACCAAAATTTGTTCCAAATCGAA 57.383 28.000 4.92 0.00 0.00 3.71
28 29 7.467623 TCAAAACCAAAATTTGTTCCAAATCG 58.532 30.769 4.92 0.00 38.57 3.34
32 33 7.510549 TGTTCAAAACCAAAATTTGTTCCAA 57.489 28.000 4.92 0.00 38.57 3.53
33 34 7.693969 ATGTTCAAAACCAAAATTTGTTCCA 57.306 28.000 4.92 0.00 38.57 3.53
34 35 8.978564 AAATGTTCAAAACCAAAATTTGTTCC 57.021 26.923 4.92 0.00 38.57 3.62
78 79 9.958234 TCAAATTCGAAATTTGTTCATACTCAA 57.042 25.926 21.58 6.43 39.36 3.02
79 80 9.958234 TTCAAATTCGAAATTTGTTCATACTCA 57.042 25.926 21.58 6.89 39.36 3.41
81 82 8.901748 CGTTCAAATTCGAAATTTGTTCATACT 58.098 29.630 21.58 0.00 39.36 2.12
83 84 8.076781 TCCGTTCAAATTCGAAATTTGTTCATA 58.923 29.630 21.58 8.74 39.36 2.15
84 85 6.920758 TCCGTTCAAATTCGAAATTTGTTCAT 59.079 30.769 21.58 0.00 39.36 2.57
85 86 6.266323 TCCGTTCAAATTCGAAATTTGTTCA 58.734 32.000 21.58 11.65 39.36 3.18
87 88 7.527084 TTTCCGTTCAAATTCGAAATTTGTT 57.473 28.000 21.58 4.60 39.36 2.83
88 89 7.223777 ACATTTCCGTTCAAATTCGAAATTTGT 59.776 29.630 21.58 9.34 39.36 2.83
90 91 7.307101 CCACATTTCCGTTCAAATTCGAAATTT 60.307 33.333 0.00 0.84 0.00 1.82
91 92 6.145371 CCACATTTCCGTTCAAATTCGAAATT 59.855 34.615 0.00 0.00 0.00 1.82
92 93 5.633182 CCACATTTCCGTTCAAATTCGAAAT 59.367 36.000 0.00 0.00 0.00 2.17
93 94 4.979197 CCACATTTCCGTTCAAATTCGAAA 59.021 37.500 0.00 0.00 0.00 3.46
94 95 4.276183 TCCACATTTCCGTTCAAATTCGAA 59.724 37.500 0.00 0.00 0.00 3.71
96 97 4.153958 TCCACATTTCCGTTCAAATTCG 57.846 40.909 0.00 0.00 0.00 3.34
97 98 5.528870 AGTTCCACATTTCCGTTCAAATTC 58.471 37.500 0.00 0.00 0.00 2.17
100 101 3.002862 CGAGTTCCACATTTCCGTTCAAA 59.997 43.478 0.00 0.00 0.00 2.69
101 102 2.546368 CGAGTTCCACATTTCCGTTCAA 59.454 45.455 0.00 0.00 0.00 2.69
102 103 2.139917 CGAGTTCCACATTTCCGTTCA 58.860 47.619 0.00 0.00 0.00 3.18
103 104 2.409975 TCGAGTTCCACATTTCCGTTC 58.590 47.619 0.00 0.00 0.00 3.95
104 105 2.536761 TCGAGTTCCACATTTCCGTT 57.463 45.000 0.00 0.00 0.00 4.44
105 106 2.536761 TTCGAGTTCCACATTTCCGT 57.463 45.000 0.00 0.00 0.00 4.69
106 107 3.889196 TTTTCGAGTTCCACATTTCCG 57.111 42.857 0.00 0.00 0.00 4.30
107 108 5.528870 ACAATTTTCGAGTTCCACATTTCC 58.471 37.500 0.00 0.00 0.00 3.13
110 111 6.142818 TGAACAATTTTCGAGTTCCACATT 57.857 33.333 10.81 0.00 40.58 2.71
113 114 7.149192 CGTATTTGAACAATTTTCGAGTTCCAC 60.149 37.037 10.81 4.70 40.58 4.02
115 116 7.073265 TCGTATTTGAACAATTTTCGAGTTCC 58.927 34.615 10.81 0.00 40.58 3.62
116 117 8.483743 TTCGTATTTGAACAATTTTCGAGTTC 57.516 30.769 7.37 7.37 41.42 3.01
124 125 8.356657 TGGACAGATTTCGTATTTGAACAATTT 58.643 29.630 0.00 0.00 0.00 1.82
127 128 6.869315 TGGACAGATTTCGTATTTGAACAA 57.131 33.333 0.00 0.00 0.00 2.83
128 129 6.869315 TTGGACAGATTTCGTATTTGAACA 57.131 33.333 0.00 0.00 0.00 3.18
129 130 9.274065 GTATTTGGACAGATTTCGTATTTGAAC 57.726 33.333 0.00 0.00 0.00 3.18
131 132 7.546316 TCGTATTTGGACAGATTTCGTATTTGA 59.454 33.333 0.00 0.00 0.00 2.69
132 133 7.680982 TCGTATTTGGACAGATTTCGTATTTG 58.319 34.615 0.00 0.00 0.00 2.32
135 136 7.926555 AGATTCGTATTTGGACAGATTTCGTAT 59.073 33.333 0.00 0.00 0.00 3.06
136 137 7.222031 CAGATTCGTATTTGGACAGATTTCGTA 59.778 37.037 0.00 0.00 0.00 3.43
137 138 6.036083 CAGATTCGTATTTGGACAGATTTCGT 59.964 38.462 0.00 0.00 0.00 3.85
138 139 6.036083 ACAGATTCGTATTTGGACAGATTTCG 59.964 38.462 0.00 0.00 0.00 3.46
139 140 7.308782 ACAGATTCGTATTTGGACAGATTTC 57.691 36.000 0.00 0.00 0.00 2.17
141 142 6.316390 GGAACAGATTCGTATTTGGACAGATT 59.684 38.462 0.00 0.00 35.48 2.40
142 143 5.817816 GGAACAGATTCGTATTTGGACAGAT 59.182 40.000 0.00 0.00 35.48 2.90
143 144 5.175859 GGAACAGATTCGTATTTGGACAGA 58.824 41.667 0.00 0.00 35.48 3.41
145 146 4.900684 TGGAACAGATTCGTATTTGGACA 58.099 39.130 0.00 0.00 35.48 4.02
146 147 5.873179 TTGGAACAGATTCGTATTTGGAC 57.127 39.130 0.00 0.00 42.39 4.02
147 148 7.461182 AATTTGGAACAGATTCGTATTTGGA 57.539 32.000 0.00 0.00 38.93 3.53
166 167 8.644092 CCTCCAGGATTGAACAAACCAAATTTG 61.644 40.741 11.40 11.40 44.92 2.32
168 169 5.221702 CCTCCAGGATTGAACAAACCAAATT 60.222 40.000 14.40 0.00 35.90 1.82
169 170 4.284234 CCTCCAGGATTGAACAAACCAAAT 59.716 41.667 14.40 0.00 35.90 2.32
171 172 3.117322 TCCTCCAGGATTGAACAAACCAA 60.117 43.478 14.40 0.00 39.78 3.67
172 173 2.445145 TCCTCCAGGATTGAACAAACCA 59.555 45.455 14.40 0.00 39.78 3.67
173 174 3.154827 TCCTCCAGGATTGAACAAACC 57.845 47.619 5.85 5.85 39.78 3.27
174 175 3.255888 GGTTCCTCCAGGATTGAACAAAC 59.744 47.826 23.71 10.51 44.98 2.93
175 176 3.140144 AGGTTCCTCCAGGATTGAACAAA 59.860 43.478 23.71 0.00 44.98 2.83
176 177 2.716424 AGGTTCCTCCAGGATTGAACAA 59.284 45.455 23.71 0.00 44.98 2.83
178 179 3.441500 AAGGTTCCTCCAGGATTGAAC 57.558 47.619 17.98 17.98 44.98 3.18
180 181 3.913799 TGTTAAGGTTCCTCCAGGATTGA 59.086 43.478 0.00 0.00 44.98 2.57
181 182 4.010349 GTGTTAAGGTTCCTCCAGGATTG 58.990 47.826 0.00 0.00 44.98 2.67
183 184 3.256704 TGTGTTAAGGTTCCTCCAGGAT 58.743 45.455 0.00 0.00 44.98 3.24
184 185 2.696775 TGTGTTAAGGTTCCTCCAGGA 58.303 47.619 0.00 0.00 43.73 3.86
185 186 3.502123 TTGTGTTAAGGTTCCTCCAGG 57.498 47.619 0.00 0.00 39.02 4.45
186 187 4.010349 GGATTGTGTTAAGGTTCCTCCAG 58.990 47.826 0.00 0.00 39.02 3.86
187 188 3.396276 TGGATTGTGTTAAGGTTCCTCCA 59.604 43.478 0.00 0.00 39.02 3.86
188 189 4.028993 TGGATTGTGTTAAGGTTCCTCC 57.971 45.455 0.00 0.00 0.00 4.30
190 191 5.711976 CAGATTGGATTGTGTTAAGGTTCCT 59.288 40.000 0.00 0.00 0.00 3.36
191 192 5.710099 TCAGATTGGATTGTGTTAAGGTTCC 59.290 40.000 0.00 0.00 0.00 3.62
193 194 7.233348 ACATTCAGATTGGATTGTGTTAAGGTT 59.767 33.333 0.00 0.00 32.03 3.50
198 199 6.009589 ACCACATTCAGATTGGATTGTGTTA 58.990 36.000 13.72 0.00 42.93 2.41
200 201 4.410099 ACCACATTCAGATTGGATTGTGT 58.590 39.130 13.72 3.91 42.93 3.72
201 202 5.395682 AACCACATTCAGATTGGATTGTG 57.604 39.130 9.87 9.87 43.55 3.33
203 204 6.028146 TGAAACCACATTCAGATTGGATTG 57.972 37.500 0.00 0.00 34.50 2.67
204 205 6.669125 TTGAAACCACATTCAGATTGGATT 57.331 33.333 0.00 0.00 40.21 3.01
206 207 6.669125 ATTTGAAACCACATTCAGATTGGA 57.331 33.333 0.00 0.00 40.21 3.53
208 209 7.441760 TCCAAATTTGAAACCACATTCAGATTG 59.558 33.333 19.86 5.90 40.93 2.67
209 210 7.507829 TCCAAATTTGAAACCACATTCAGATT 58.492 30.769 19.86 1.34 42.55 2.40
210 211 7.065120 TCCAAATTTGAAACCACATTCAGAT 57.935 32.000 19.86 0.00 40.21 2.90
211 212 6.477053 TCCAAATTTGAAACCACATTCAGA 57.523 33.333 19.86 0.62 40.21 3.27
212 213 6.347888 GCATCCAAATTTGAAACCACATTCAG 60.348 38.462 19.86 0.00 40.21 3.02
213 214 5.469421 GCATCCAAATTTGAAACCACATTCA 59.531 36.000 19.86 0.00 37.53 2.57
214 215 5.389725 CGCATCCAAATTTGAAACCACATTC 60.390 40.000 19.86 0.00 0.00 2.67
215 216 4.451774 CGCATCCAAATTTGAAACCACATT 59.548 37.500 19.86 0.00 0.00 2.71
217 218 3.388308 CGCATCCAAATTTGAAACCACA 58.612 40.909 19.86 0.00 0.00 4.17
218 219 2.736192 CCGCATCCAAATTTGAAACCAC 59.264 45.455 19.86 3.25 0.00 4.16
219 220 2.869636 GCCGCATCCAAATTTGAAACCA 60.870 45.455 19.86 0.00 0.00 3.67
221 222 2.411904 TGCCGCATCCAAATTTGAAAC 58.588 42.857 19.86 5.25 0.00 2.78
222 223 2.827800 TGCCGCATCCAAATTTGAAA 57.172 40.000 19.86 7.65 0.00 2.69
223 224 2.827800 TTGCCGCATCCAAATTTGAA 57.172 40.000 19.86 0.00 0.00 2.69
224 225 2.418471 GGATTGCCGCATCCAAATTTGA 60.418 45.455 19.86 6.29 36.95 2.69
225 226 1.935199 GGATTGCCGCATCCAAATTTG 59.065 47.619 11.40 11.40 36.95 2.32
227 228 1.137479 CTGGATTGCCGCATCCAAATT 59.863 47.619 18.98 0.00 45.38 1.82
228 229 0.748450 CTGGATTGCCGCATCCAAAT 59.252 50.000 18.98 1.02 45.38 2.32
229 230 0.611618 ACTGGATTGCCGCATCCAAA 60.612 50.000 18.98 4.73 45.38 3.28
231 232 0.611618 AAACTGGATTGCCGCATCCA 60.612 50.000 18.01 18.01 44.07 3.41
232 233 0.101219 GAAACTGGATTGCCGCATCC 59.899 55.000 12.42 12.42 36.79 3.51
234 235 1.477553 ATGAAACTGGATTGCCGCAT 58.522 45.000 0.00 0.00 36.79 4.73
236 237 2.368655 AAATGAAACTGGATTGCCGC 57.631 45.000 0.00 0.00 36.79 6.53
237 238 3.911868 TGAAAATGAAACTGGATTGCCG 58.088 40.909 0.00 0.00 36.79 5.69
238 239 6.633856 AGTATGAAAATGAAACTGGATTGCC 58.366 36.000 0.00 0.00 0.00 4.52
239 240 6.753744 GGAGTATGAAAATGAAACTGGATTGC 59.246 38.462 0.00 0.00 0.00 3.56
241 242 7.671398 ACTGGAGTATGAAAATGAAACTGGATT 59.329 33.333 0.00 0.00 0.00 3.01
244 245 6.430925 TGACTGGAGTATGAAAATGAAACTGG 59.569 38.462 0.00 0.00 0.00 4.00
245 246 7.173907 ACTGACTGGAGTATGAAAATGAAACTG 59.826 37.037 0.00 0.00 0.00 3.16
246 247 7.173907 CACTGACTGGAGTATGAAAATGAAACT 59.826 37.037 0.00 0.00 0.00 2.66
247 248 7.041098 ACACTGACTGGAGTATGAAAATGAAAC 60.041 37.037 0.00 0.00 0.00 2.78
249 250 6.533730 ACACTGACTGGAGTATGAAAATGAA 58.466 36.000 0.00 0.00 0.00 2.57
251 252 7.063898 CACTACACTGACTGGAGTATGAAAATG 59.936 40.741 0.00 0.00 42.95 2.32
254 255 5.538813 ACACTACACTGACTGGAGTATGAAA 59.461 40.000 0.00 0.00 42.95 2.69
255 256 5.077564 ACACTACACTGACTGGAGTATGAA 58.922 41.667 0.00 0.00 42.95 2.57
256 257 4.663334 ACACTACACTGACTGGAGTATGA 58.337 43.478 0.00 0.00 42.95 2.15
257 258 6.701145 ATACACTACACTGACTGGAGTATG 57.299 41.667 0.00 0.00 42.95 2.39
259 260 7.400439 ACTTATACACTACACTGACTGGAGTA 58.600 38.462 0.00 0.00 42.95 2.59
261 262 6.761099 ACTTATACACTACACTGACTGGAG 57.239 41.667 0.00 0.00 36.78 3.86
266 267 6.452090 CGCGAAAACTTATACACTACACTGAC 60.452 42.308 0.00 0.00 0.00 3.51
267 268 5.570206 CGCGAAAACTTATACACTACACTGA 59.430 40.000 0.00 0.00 0.00 3.41
268 269 5.344128 ACGCGAAAACTTATACACTACACTG 59.656 40.000 15.93 0.00 0.00 3.66
269 270 5.464168 ACGCGAAAACTTATACACTACACT 58.536 37.500 15.93 0.00 0.00 3.55
270 271 5.752098 ACGCGAAAACTTATACACTACAC 57.248 39.130 15.93 0.00 0.00 2.90
273 274 5.389778 TCGAACGCGAAAACTTATACACTA 58.610 37.500 15.93 0.00 44.78 2.74
274 275 4.229096 TCGAACGCGAAAACTTATACACT 58.771 39.130 15.93 0.00 44.78 3.55
275 276 4.551056 TCGAACGCGAAAACTTATACAC 57.449 40.909 15.93 0.00 44.78 2.90
297 298 1.375523 AAATGTGCGGACGAGGGAC 60.376 57.895 1.60 0.00 0.00 4.46
298 299 1.375396 CAAATGTGCGGACGAGGGA 60.375 57.895 1.60 0.00 0.00 4.20
299 300 3.039202 GCAAATGTGCGGACGAGGG 62.039 63.158 1.60 0.00 41.93 4.30
319 320 0.314302 TTATAGAGGAAGCCGCGAGC 59.686 55.000 8.23 9.98 44.25 5.03
320 321 1.880675 TCTTATAGAGGAAGCCGCGAG 59.119 52.381 8.23 0.00 0.00 5.03
323 324 5.112686 CCATATTCTTATAGAGGAAGCCGC 58.887 45.833 0.00 0.00 0.00 6.53
324 325 5.112686 GCCATATTCTTATAGAGGAAGCCG 58.887 45.833 0.00 0.00 0.00 5.52
325 326 5.190726 AGGCCATATTCTTATAGAGGAAGCC 59.809 44.000 5.01 3.00 32.68 4.35
326 327 6.112058 CAGGCCATATTCTTATAGAGGAAGC 58.888 44.000 5.01 0.00 0.00 3.86
327 328 6.352565 CCCAGGCCATATTCTTATAGAGGAAG 60.353 46.154 5.01 0.00 0.00 3.46
328 329 5.488919 CCCAGGCCATATTCTTATAGAGGAA 59.511 44.000 5.01 0.00 0.00 3.36
330 331 4.785376 ACCCAGGCCATATTCTTATAGAGG 59.215 45.833 5.01 0.00 0.00 3.69
331 332 5.738909 CACCCAGGCCATATTCTTATAGAG 58.261 45.833 5.01 0.00 0.00 2.43
332 333 4.019321 GCACCCAGGCCATATTCTTATAGA 60.019 45.833 5.01 0.00 0.00 1.98
333 334 4.018960 AGCACCCAGGCCATATTCTTATAG 60.019 45.833 5.01 0.00 0.00 1.31
334 335 3.916349 AGCACCCAGGCCATATTCTTATA 59.084 43.478 5.01 0.00 0.00 0.98
335 336 2.718609 AGCACCCAGGCCATATTCTTAT 59.281 45.455 5.01 0.00 0.00 1.73
336 337 2.135189 AGCACCCAGGCCATATTCTTA 58.865 47.619 5.01 0.00 0.00 2.10
338 339 1.701847 CTAGCACCCAGGCCATATTCT 59.298 52.381 5.01 0.00 0.00 2.40
339 340 1.421646 ACTAGCACCCAGGCCATATTC 59.578 52.381 5.01 0.00 0.00 1.75
340 341 1.143684 CACTAGCACCCAGGCCATATT 59.856 52.381 5.01 0.00 0.00 1.28
341 342 0.767375 CACTAGCACCCAGGCCATAT 59.233 55.000 5.01 0.00 0.00 1.78
343 344 1.616327 TCACTAGCACCCAGGCCAT 60.616 57.895 5.01 0.00 0.00 4.40
344 345 2.203922 TCACTAGCACCCAGGCCA 60.204 61.111 5.01 0.00 0.00 5.36
345 346 2.586792 CTCACTAGCACCCAGGCC 59.413 66.667 0.00 0.00 0.00 5.19
356 357 3.619900 ATATCAGACCCCTGCTCACTA 57.380 47.619 0.00 0.00 40.20 2.74
357 358 2.485966 ATATCAGACCCCTGCTCACT 57.514 50.000 0.00 0.00 40.20 3.41
358 359 3.567478 AAATATCAGACCCCTGCTCAC 57.433 47.619 0.00 0.00 40.20 3.51
384 385 9.026121 ACTAACTGAAACTGATACTGATACACT 57.974 33.333 0.00 0.00 0.00 3.55
385 386 9.077674 CACTAACTGAAACTGATACTGATACAC 57.922 37.037 0.00 0.00 0.00 2.90
386 387 8.803235 ACACTAACTGAAACTGATACTGATACA 58.197 33.333 0.00 0.00 0.00 2.29
387 388 9.291664 GACACTAACTGAAACTGATACTGATAC 57.708 37.037 0.00 0.00 0.00 2.24
390 391 7.448777 AGAGACACTAACTGAAACTGATACTGA 59.551 37.037 0.00 0.00 0.00 3.41
391 392 7.598278 AGAGACACTAACTGAAACTGATACTG 58.402 38.462 0.00 0.00 0.00 2.74
393 394 9.724839 GATAGAGACACTAACTGAAACTGATAC 57.275 37.037 0.00 0.00 34.56 2.24
394 395 9.462606 TGATAGAGACACTAACTGAAACTGATA 57.537 33.333 0.00 0.00 34.56 2.15
395 396 8.354711 TGATAGAGACACTAACTGAAACTGAT 57.645 34.615 0.00 0.00 34.56 2.90
397 398 8.818141 TTTGATAGAGACACTAACTGAAACTG 57.182 34.615 0.00 0.00 34.56 3.16
400 401 9.996554 TGATTTTGATAGAGACACTAACTGAAA 57.003 29.630 0.00 0.00 34.56 2.69
401 402 9.996554 TTGATTTTGATAGAGACACTAACTGAA 57.003 29.630 0.00 0.00 34.56 3.02
402 403 9.645059 CTTGATTTTGATAGAGACACTAACTGA 57.355 33.333 0.00 0.00 34.56 3.41
404 405 8.816894 TCCTTGATTTTGATAGAGACACTAACT 58.183 33.333 0.00 0.00 34.56 2.24
405 406 9.092876 CTCCTTGATTTTGATAGAGACACTAAC 57.907 37.037 0.00 0.00 34.56 2.34
406 407 8.816894 ACTCCTTGATTTTGATAGAGACACTAA 58.183 33.333 0.00 0.00 34.56 2.24
407 408 8.253810 CACTCCTTGATTTTGATAGAGACACTA 58.746 37.037 0.00 0.00 35.42 2.74
409 410 6.183360 GCACTCCTTGATTTTGATAGAGACAC 60.183 42.308 0.00 0.00 0.00 3.67
410 411 5.877012 GCACTCCTTGATTTTGATAGAGACA 59.123 40.000 0.00 0.00 0.00 3.41
411 412 6.112058 AGCACTCCTTGATTTTGATAGAGAC 58.888 40.000 0.00 0.00 0.00 3.36
412 413 6.305272 AGCACTCCTTGATTTTGATAGAGA 57.695 37.500 0.00 0.00 0.00 3.10
414 415 6.475504 TGAAGCACTCCTTGATTTTGATAGA 58.524 36.000 0.00 0.00 32.60 1.98
415 416 6.183360 CCTGAAGCACTCCTTGATTTTGATAG 60.183 42.308 0.00 0.00 32.60 2.08
416 417 5.649395 CCTGAAGCACTCCTTGATTTTGATA 59.351 40.000 0.00 0.00 32.60 2.15
417 418 4.461781 CCTGAAGCACTCCTTGATTTTGAT 59.538 41.667 0.00 0.00 32.60 2.57
418 419 3.822735 CCTGAAGCACTCCTTGATTTTGA 59.177 43.478 0.00 0.00 32.60 2.69
419 420 3.571401 ACCTGAAGCACTCCTTGATTTTG 59.429 43.478 0.00 0.00 32.60 2.44
420 421 3.837355 ACCTGAAGCACTCCTTGATTTT 58.163 40.909 0.00 0.00 32.60 1.82
423 424 3.776969 TGATACCTGAAGCACTCCTTGAT 59.223 43.478 0.00 0.00 32.78 2.57
424 425 3.173151 TGATACCTGAAGCACTCCTTGA 58.827 45.455 0.00 0.00 32.78 3.02
425 426 3.055530 ACTGATACCTGAAGCACTCCTTG 60.056 47.826 0.00 0.00 32.78 3.61
427 428 2.826488 ACTGATACCTGAAGCACTCCT 58.174 47.619 0.00 0.00 0.00 3.69
428 429 3.618690 AACTGATACCTGAAGCACTCC 57.381 47.619 0.00 0.00 0.00 3.85
429 430 4.569943 TGAAACTGATACCTGAAGCACTC 58.430 43.478 0.00 0.00 0.00 3.51
430 431 4.040952 ACTGAAACTGATACCTGAAGCACT 59.959 41.667 0.00 0.00 0.00 4.40
431 432 4.319177 ACTGAAACTGATACCTGAAGCAC 58.681 43.478 0.00 0.00 0.00 4.40
433 434 6.091441 CACTAACTGAAACTGATACCTGAAGC 59.909 42.308 0.00 0.00 0.00 3.86
434 435 7.155328 ACACTAACTGAAACTGATACCTGAAG 58.845 38.462 0.00 0.00 0.00 3.02
436 437 6.493802 AGACACTAACTGAAACTGATACCTGA 59.506 38.462 0.00 0.00 0.00 3.86
438 439 6.919775 AGACACTAACTGAAACTGATACCT 57.080 37.500 0.00 0.00 0.00 3.08
439 440 8.467598 TGATAGACACTAACTGAAACTGATACC 58.532 37.037 0.00 0.00 0.00 2.73
440 441 9.856488 TTGATAGACACTAACTGAAACTGATAC 57.144 33.333 0.00 0.00 0.00 2.24
442 443 9.778741 TTTTGATAGACACTAACTGAAACTGAT 57.221 29.630 0.00 0.00 0.00 2.90
443 444 9.778741 ATTTTGATAGACACTAACTGAAACTGA 57.221 29.630 0.00 0.00 0.00 3.41
448 449 9.778741 AACTGATTTTGATAGACACTAACTGAA 57.221 29.630 0.00 0.00 0.00 3.02
462 463 9.956720 CTGAAACTGAAACTAACTGATTTTGAT 57.043 29.630 0.00 0.00 0.00 2.57
463 464 8.956426 ACTGAAACTGAAACTAACTGATTTTGA 58.044 29.630 0.00 0.00 0.00 2.69
468 469 9.429359 CTCATACTGAAACTGAAACTAACTGAT 57.571 33.333 0.00 0.00 0.00 2.90
469 470 7.385205 GCTCATACTGAAACTGAAACTAACTGA 59.615 37.037 0.00 0.00 0.00 3.41
470 471 7.386299 AGCTCATACTGAAACTGAAACTAACTG 59.614 37.037 0.00 0.00 0.00 3.16
471 472 7.386299 CAGCTCATACTGAAACTGAAACTAACT 59.614 37.037 0.00 0.00 40.25 2.24
472 473 7.171678 ACAGCTCATACTGAAACTGAAACTAAC 59.828 37.037 11.62 0.00 40.25 2.34
476 477 5.931441 ACAGCTCATACTGAAACTGAAAC 57.069 39.130 11.62 0.00 40.25 2.78
495 496 8.935844 TGTACTGAAATTGAACTGCTATTACAG 58.064 33.333 0.00 0.00 43.59 2.74
497 498 8.717821 TGTGTACTGAAATTGAACTGCTATTAC 58.282 33.333 0.00 0.00 0.00 1.89
500 501 7.928307 ATGTGTACTGAAATTGAACTGCTAT 57.072 32.000 0.00 0.00 0.00 2.97
501 502 7.062956 CGTATGTGTACTGAAATTGAACTGCTA 59.937 37.037 0.00 0.00 0.00 3.49
502 503 6.128553 CGTATGTGTACTGAAATTGAACTGCT 60.129 38.462 0.00 0.00 0.00 4.24
503 504 6.015504 CGTATGTGTACTGAAATTGAACTGC 58.984 40.000 0.00 0.00 0.00 4.40
517 518 6.741811 CAGACAAGAAGAGTACGTATGTGTAC 59.258 42.308 0.00 2.10 44.00 2.90
518 519 6.429078 ACAGACAAGAAGAGTACGTATGTGTA 59.571 38.462 0.00 0.00 31.36 2.90
520 521 5.700846 ACAGACAAGAAGAGTACGTATGTG 58.299 41.667 0.00 0.00 31.36 3.21
524 525 4.277672 AGCAACAGACAAGAAGAGTACGTA 59.722 41.667 0.00 0.00 0.00 3.57
526 527 3.643763 AGCAACAGACAAGAAGAGTACG 58.356 45.455 0.00 0.00 0.00 3.67
529 530 7.702772 CGTATATTAGCAACAGACAAGAAGAGT 59.297 37.037 0.00 0.00 0.00 3.24
530 531 7.702772 ACGTATATTAGCAACAGACAAGAAGAG 59.297 37.037 0.00 0.00 0.00 2.85
531 532 7.544622 ACGTATATTAGCAACAGACAAGAAGA 58.455 34.615 0.00 0.00 0.00 2.87
532 533 7.757097 ACGTATATTAGCAACAGACAAGAAG 57.243 36.000 0.00 0.00 0.00 2.85
534 535 7.764331 TGTACGTATATTAGCAACAGACAAGA 58.236 34.615 0.00 0.00 0.00 3.02
535 536 7.913821 TCTGTACGTATATTAGCAACAGACAAG 59.086 37.037 7.70 0.00 37.53 3.16
536 537 7.764331 TCTGTACGTATATTAGCAACAGACAA 58.236 34.615 7.70 0.00 37.53 3.18
537 538 7.281549 TCTCTGTACGTATATTAGCAACAGACA 59.718 37.037 7.70 0.00 37.53 3.41
538 539 7.587028 GTCTCTGTACGTATATTAGCAACAGAC 59.413 40.741 7.70 6.37 37.53 3.51
583 584 6.444704 TGGGGGTAATTAATATGCTTGGAAA 58.555 36.000 0.00 0.00 0.00 3.13
641 642 7.604927 TCAACAAGTAATACCAACTAGCGAATT 59.395 33.333 0.00 0.00 0.00 2.17
657 1673 5.769662 AGTTCTTGGCATGATCAACAAGTAA 59.230 36.000 24.89 18.52 40.74 2.24
892 1940 2.380084 TCCTGTCGTGGATTACAAGC 57.620 50.000 0.00 0.00 0.00 4.01
914 1962 7.201565 GCCGCTTTGCTATATATAAGAGAAAGG 60.202 40.741 0.00 7.29 0.00 3.11
917 1965 6.936279 AGCCGCTTTGCTATATATAAGAGAA 58.064 36.000 0.00 0.00 40.56 2.87
921 1969 5.751028 GGAGAGCCGCTTTGCTATATATAAG 59.249 44.000 0.00 0.00 42.95 1.73
922 1970 5.395324 GGGAGAGCCGCTTTGCTATATATAA 60.395 44.000 2.42 0.00 42.95 0.98
923 1971 4.099573 GGGAGAGCCGCTTTGCTATATATA 59.900 45.833 2.42 0.00 42.95 0.86
924 1972 3.118592 GGGAGAGCCGCTTTGCTATATAT 60.119 47.826 2.42 0.00 42.95 0.86
925 1973 2.233922 GGGAGAGCCGCTTTGCTATATA 59.766 50.000 2.42 0.00 42.95 0.86
927 1975 0.393077 GGGAGAGCCGCTTTGCTATA 59.607 55.000 2.42 0.00 42.95 1.31
928 1976 1.147153 GGGAGAGCCGCTTTGCTAT 59.853 57.895 2.42 0.00 42.95 2.97
929 1977 2.584608 GGGAGAGCCGCTTTGCTA 59.415 61.111 2.42 0.00 42.95 3.49
930 1978 4.416738 GGGGAGAGCCGCTTTGCT 62.417 66.667 2.42 0.00 46.37 3.91
960 2032 3.244700 GGATCGATGGATGGAATCTGGTT 60.245 47.826 0.54 0.00 44.71 3.67
962 2034 2.303890 TGGATCGATGGATGGAATCTGG 59.696 50.000 0.54 0.00 44.71 3.86
963 2035 3.690475 TGGATCGATGGATGGAATCTG 57.310 47.619 0.54 0.00 44.71 2.90
965 2037 4.484537 AGATGGATCGATGGATGGAATC 57.515 45.455 0.54 0.00 44.55 2.52
966 2038 5.249163 TGTTAGATGGATCGATGGATGGAAT 59.751 40.000 0.54 0.00 31.51 3.01
967 2039 4.592778 TGTTAGATGGATCGATGGATGGAA 59.407 41.667 0.54 0.00 31.51 3.53
968 2040 4.021104 GTGTTAGATGGATCGATGGATGGA 60.021 45.833 0.54 0.00 31.51 3.41
969 2041 4.248859 GTGTTAGATGGATCGATGGATGG 58.751 47.826 0.54 0.00 31.51 3.51
971 2043 3.903714 TGGTGTTAGATGGATCGATGGAT 59.096 43.478 0.54 0.00 34.96 3.41
1042 2118 5.046087 GGGGTAGGAAGAAAGCTACTACAAA 60.046 44.000 0.00 0.00 36.88 2.83
1358 2461 4.406972 TGTCCTGAGGAAGATCACCTTATG 59.593 45.833 0.96 6.39 37.93 1.90
1360 2463 4.061131 TGTCCTGAGGAAGATCACCTTA 57.939 45.455 0.96 7.78 37.93 2.69
1374 2479 1.069090 GACCACGCACTTGTCCTGA 59.931 57.895 0.00 0.00 0.00 3.86
1389 2494 4.415332 TCGTCTGCGAAGGCGACC 62.415 66.667 18.03 0.00 44.92 4.79
1714 2819 2.192263 GGTCTCTTCCTCCCAGTGATT 58.808 52.381 0.00 0.00 0.00 2.57
1756 2861 5.313712 TCTTCCCCAGTTTACACAGAATTC 58.686 41.667 0.00 0.00 0.00 2.17
1758 2863 4.993705 TCTTCCCCAGTTTACACAGAAT 57.006 40.909 0.00 0.00 0.00 2.40
1776 2881 9.878599 CAGTCAATAAGTAAAAACGACATTCTT 57.121 29.630 0.00 0.00 0.00 2.52
1898 3003 0.299895 CAGATCTAGCACGCGCAAAG 59.700 55.000 5.73 0.00 42.27 2.77
1902 3007 2.279120 AGCAGATCTAGCACGCGC 60.279 61.111 5.73 0.00 38.99 6.86
1938 3046 5.713861 GTCTTCTAGTTAGTTGGGGACACTA 59.286 44.000 0.00 0.00 42.67 2.74
1940 3048 4.617762 CGTCTTCTAGTTAGTTGGGGACAC 60.618 50.000 0.00 0.00 42.67 3.67
1957 3065 5.625251 TGTCTTGAATCGTAGTACGTCTTC 58.375 41.667 21.38 22.04 43.14 2.87
1962 3070 6.442487 TTTGTTGTCTTGAATCGTAGTACG 57.558 37.500 16.65 16.65 44.19 3.67
1963 3071 9.953825 CTAATTTGTTGTCTTGAATCGTAGTAC 57.046 33.333 0.00 0.00 0.00 2.73
1965 3073 7.119262 CCCTAATTTGTTGTCTTGAATCGTAGT 59.881 37.037 0.00 0.00 0.00 2.73
1966 3074 7.119262 ACCCTAATTTGTTGTCTTGAATCGTAG 59.881 37.037 0.00 0.00 0.00 3.51
1967 3075 6.938030 ACCCTAATTTGTTGTCTTGAATCGTA 59.062 34.615 0.00 0.00 0.00 3.43
1968 3076 5.768164 ACCCTAATTTGTTGTCTTGAATCGT 59.232 36.000 0.00 0.00 0.00 3.73
1972 3080 7.014808 CCCTAAACCCTAATTTGTTGTCTTGAA 59.985 37.037 0.00 0.00 0.00 2.69
1973 3081 6.492087 CCCTAAACCCTAATTTGTTGTCTTGA 59.508 38.462 0.00 0.00 0.00 3.02
1974 3082 6.266786 ACCCTAAACCCTAATTTGTTGTCTTG 59.733 38.462 0.00 0.00 0.00 3.02
1978 3086 7.177744 CACATACCCTAAACCCTAATTTGTTGT 59.822 37.037 0.00 0.00 0.00 3.32
1979 3087 7.177744 ACACATACCCTAAACCCTAATTTGTTG 59.822 37.037 0.00 0.00 0.00 3.33
1981 3089 6.661805 CACACATACCCTAAACCCTAATTTGT 59.338 38.462 0.00 0.00 0.00 2.83
1982 3090 6.887545 TCACACATACCCTAAACCCTAATTTG 59.112 38.462 0.00 0.00 0.00 2.32
1983 3091 7.034967 TCACACATACCCTAAACCCTAATTT 57.965 36.000 0.00 0.00 0.00 1.82
1984 3092 6.353602 CCTCACACATACCCTAAACCCTAATT 60.354 42.308 0.00 0.00 0.00 1.40
1985 3093 5.132144 CCTCACACATACCCTAAACCCTAAT 59.868 44.000 0.00 0.00 0.00 1.73
1999 3141 2.371841 ACTCCTTGTTGCCTCACACATA 59.628 45.455 0.00 0.00 0.00 2.29
2001 3143 0.546122 ACTCCTTGTTGCCTCACACA 59.454 50.000 0.00 0.00 0.00 3.72
2085 3445 7.444183 ACACAAACACACATTATTGTACTAGCT 59.556 33.333 0.00 0.00 34.45 3.32
2172 5731 1.758906 GGAGGAGGAGAAGGGGACG 60.759 68.421 0.00 0.00 0.00 4.79
2173 5732 0.397957 GAGGAGGAGGAGAAGGGGAC 60.398 65.000 0.00 0.00 0.00 4.46
2202 5761 3.648067 TCAGATATGAAACAGGCTAGGGG 59.352 47.826 0.00 0.00 0.00 4.79
2282 6102 4.036852 CAGACTGCTGTAGAACGGATATCA 59.963 45.833 4.83 0.00 37.37 2.15
2479 6307 6.964807 TGTCCTGAATAAATGAATGGATGG 57.035 37.500 0.00 0.00 0.00 3.51
2615 9705 6.295916 CCCCGCCTAAGAAATAGATACATTCT 60.296 42.308 0.00 0.00 38.57 2.40
2616 9706 5.875359 CCCCGCCTAAGAAATAGATACATTC 59.125 44.000 0.00 0.00 33.04 2.67
2617 9707 5.309806 ACCCCGCCTAAGAAATAGATACATT 59.690 40.000 0.00 0.00 33.04 2.71
2625 9715 5.211201 ACTTAGTACCCCGCCTAAGAAATA 58.789 41.667 12.08 0.00 41.65 1.40
2646 9736 8.667592 ATGAAAGGAGTAAGGAAACTAGTACT 57.332 34.615 0.00 0.00 42.68 2.73
2647 9737 9.152595 CAATGAAAGGAGTAAGGAAACTAGTAC 57.847 37.037 0.00 0.00 42.68 2.73
2648 9738 9.096823 TCAATGAAAGGAGTAAGGAAACTAGTA 57.903 33.333 0.00 0.00 42.68 1.82
2649 9739 7.878644 GTCAATGAAAGGAGTAAGGAAACTAGT 59.121 37.037 0.00 0.00 42.68 2.57
2670 9760 3.118738 ACCTTCGGAAGCGATTAGTCAAT 60.119 43.478 12.29 0.00 0.00 2.57
2678 9768 1.517832 CTCCACCTTCGGAAGCGAT 59.482 57.895 12.29 0.00 33.65 4.58
2684 9774 1.191489 TCATGTGCTCCACCTTCGGA 61.191 55.000 0.00 0.00 32.73 4.55
2687 9777 0.321919 TGCTCATGTGCTCCACCTTC 60.322 55.000 19.60 0.00 32.73 3.46
2710 9800 6.366877 GGTAGAGACGCTTACACAAATTAACA 59.633 38.462 0.00 0.00 0.00 2.41
2711 9801 6.183360 GGGTAGAGACGCTTACACAAATTAAC 60.183 42.308 0.00 0.00 35.67 2.01
2712 9802 5.870978 GGGTAGAGACGCTTACACAAATTAA 59.129 40.000 0.00 0.00 35.67 1.40
2713 9803 5.186409 AGGGTAGAGACGCTTACACAAATTA 59.814 40.000 0.00 0.00 46.10 1.40
2714 9804 4.020485 AGGGTAGAGACGCTTACACAAATT 60.020 41.667 0.00 0.00 46.10 1.82
2715 9805 3.514309 AGGGTAGAGACGCTTACACAAAT 59.486 43.478 0.00 0.00 46.10 2.32
2805 9895 7.071321 CCTGTAAAACCTCCCTGTAATATCTCT 59.929 40.741 0.00 0.00 0.00 3.10
2811 9901 4.227527 CCTCCTGTAAAACCTCCCTGTAAT 59.772 45.833 0.00 0.00 0.00 1.89
2817 9907 1.665137 TCCCTCCTGTAAAACCTCCC 58.335 55.000 0.00 0.00 0.00 4.30
2847 9937 8.840200 ATAGGAGTAGGATCTTGTTCTGTTTA 57.160 34.615 0.00 0.00 0.00 2.01
2848 9938 7.741554 ATAGGAGTAGGATCTTGTTCTGTTT 57.258 36.000 0.00 0.00 0.00 2.83
2851 9941 8.239038 TGTTATAGGAGTAGGATCTTGTTCTG 57.761 38.462 0.00 0.00 0.00 3.02
2853 9943 7.927092 GGTTGTTATAGGAGTAGGATCTTGTTC 59.073 40.741 0.00 0.00 0.00 3.18
2856 9946 6.555360 AGGGTTGTTATAGGAGTAGGATCTTG 59.445 42.308 0.00 0.00 0.00 3.02
2857 9947 6.694611 AGGGTTGTTATAGGAGTAGGATCTT 58.305 40.000 0.00 0.00 0.00 2.40
2858 9948 6.296435 AGGGTTGTTATAGGAGTAGGATCT 57.704 41.667 0.00 0.00 0.00 2.75
2859 9949 6.239629 CCAAGGGTTGTTATAGGAGTAGGATC 60.240 46.154 0.00 0.00 0.00 3.36
2860 9950 5.607171 CCAAGGGTTGTTATAGGAGTAGGAT 59.393 44.000 0.00 0.00 0.00 3.24
2861 9951 4.966805 CCAAGGGTTGTTATAGGAGTAGGA 59.033 45.833 0.00 0.00 0.00 2.94
2865 9955 2.093128 CGCCAAGGGTTGTTATAGGAGT 60.093 50.000 0.00 0.00 0.00 3.85
2901 9991 3.055819 ACATGTAATTCTGTCACGCCTCT 60.056 43.478 0.00 0.00 0.00 3.69
2902 9992 3.262420 ACATGTAATTCTGTCACGCCTC 58.738 45.455 0.00 0.00 0.00 4.70
2903 9993 3.334583 ACATGTAATTCTGTCACGCCT 57.665 42.857 0.00 0.00 0.00 5.52
2904 9994 4.419522 AAACATGTAATTCTGTCACGCC 57.580 40.909 0.00 0.00 0.00 5.68
2905 9995 6.302313 GTGTTAAACATGTAATTCTGTCACGC 59.698 38.462 0.00 0.00 0.00 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.