Multiple sequence alignment - TraesCS2B01G020900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G020900 chr2B 100.000 2474 0 0 1 2474 10085540 10088013 0.000000e+00 4569
1 TraesCS2B01G020900 chr2D 86.378 1292 119 27 376 1628 1783927 1782654 0.000000e+00 1358
2 TraesCS2B01G020900 chr2D 85.654 941 74 29 354 1253 641116797 641115877 0.000000e+00 933
3 TraesCS2B01G020900 chr2D 83.829 773 67 28 885 1627 641111689 641110945 0.000000e+00 682
4 TraesCS2B01G020900 chr2D 84.627 644 62 16 991 1627 1672952 1672339 7.570000e-170 606
5 TraesCS2B01G020900 chr2D 81.601 712 78 21 887 1574 1762497 1761815 7.780000e-150 540
6 TraesCS2B01G020900 chr2D 90.331 393 30 5 1242 1631 641114287 641113900 2.200000e-140 508
7 TraesCS2B01G020900 chr2D 83.288 365 38 10 991 1355 641120365 641120024 5.140000e-82 315
8 TraesCS2B01G020900 chr2D 85.813 289 32 4 1342 1627 641117677 641117395 5.170000e-77 298
9 TraesCS2B01G020900 chr2D 88.158 152 7 5 172 312 1784082 1783931 1.180000e-38 171
10 TraesCS2B01G020900 chr2D 88.991 109 12 0 1 109 1784322 1784214 4.290000e-28 135
11 TraesCS2B01G020900 chr2A 85.562 1316 120 28 354 1628 766405406 766404120 0.000000e+00 1314
12 TraesCS2B01G020900 chr2A 85.714 1295 121 29 376 1628 1187911 1186639 0.000000e+00 1308
13 TraesCS2B01G020900 chr2A 82.487 748 61 31 1629 2374 932649 931970 2.120000e-165 592
14 TraesCS2B01G020900 chr2A 82.024 751 59 32 1629 2374 857657 856978 9.930000e-159 569
15 TraesCS2B01G020900 chr2A 82.801 657 69 18 885 1518 1090679 1090044 4.650000e-152 547
16 TraesCS2B01G020900 chr2A 84.565 460 51 14 1172 1627 766401624 766401181 2.920000e-119 438
17 TraesCS2B01G020900 chr2A 91.497 294 21 2 1629 1921 864124 863834 3.830000e-108 401
18 TraesCS2B01G020900 chr2A 88.789 223 24 1 2153 2374 869106 868884 3.140000e-69 272
19 TraesCS2B01G020900 chr2A 89.404 151 6 2 172 312 1188065 1187915 5.440000e-42 182
20 TraesCS2B01G020900 chr2A 81.172 239 18 9 885 1101 766401862 766401629 1.520000e-37 167
21 TraesCS2B01G020900 chr2A 92.593 108 8 0 2 109 1188304 1188197 3.290000e-34 156
22 TraesCS2B01G020900 chr2A 91.304 115 6 2 1629 1742 870769 870658 1.180000e-33 154
23 TraesCS2B01G020900 chrUn 82.024 751 59 32 1629 2374 317644935 317645614 9.930000e-159 569
24 TraesCS2B01G020900 chrUn 87.395 238 29 1 2138 2374 328413988 328414225 3.140000e-69 272


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G020900 chr2B 10085540 10088013 2473 False 4569.000000 4569 100.000000 1 2474 1 chr2B.!!$F1 2473
1 TraesCS2B01G020900 chr2D 1672339 1672952 613 True 606.000000 606 84.627000 991 1627 1 chr2D.!!$R1 636
2 TraesCS2B01G020900 chr2D 1782654 1784322 1668 True 554.666667 1358 87.842333 1 1628 3 chr2D.!!$R3 1627
3 TraesCS2B01G020900 chr2D 641110945 641120365 9420 True 547.200000 933 85.783000 354 1631 5 chr2D.!!$R4 1277
4 TraesCS2B01G020900 chr2D 1761815 1762497 682 True 540.000000 540 81.601000 887 1574 1 chr2D.!!$R2 687
5 TraesCS2B01G020900 chr2A 766401181 766405406 4225 True 639.666667 1314 83.766333 354 1628 3 chr2A.!!$R7 1274
6 TraesCS2B01G020900 chr2A 931970 932649 679 True 592.000000 592 82.487000 1629 2374 1 chr2A.!!$R3 745
7 TraesCS2B01G020900 chr2A 856978 857657 679 True 569.000000 569 82.024000 1629 2374 1 chr2A.!!$R1 745
8 TraesCS2B01G020900 chr2A 1186639 1188304 1665 True 548.666667 1308 89.237000 2 1628 3 chr2A.!!$R6 1626
9 TraesCS2B01G020900 chr2A 1090044 1090679 635 True 547.000000 547 82.801000 885 1518 1 chr2A.!!$R4 633
10 TraesCS2B01G020900 chr2A 868884 870769 1885 True 213.000000 272 90.046500 1629 2374 2 chr2A.!!$R5 745
11 TraesCS2B01G020900 chrUn 317644935 317645614 679 False 569.000000 569 82.024000 1629 2374 1 chrUn.!!$F1 745

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
154 174 0.447801 GCAACGAGAATGACGGCAAT 59.552 50.0 0.0 0.0 34.93 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1637 12412 0.251916 CCCCGCTGGACAGTGATTTA 59.748 55.0 14.03 0.0 41.24 1.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 1.068055 CAAGGACTGCAACAAGATGGC 60.068 52.381 0.00 0.00 0.00 4.40
61 62 0.987294 CCCTCTTCACTGGTGTGGAT 59.013 55.000 0.53 0.00 43.94 3.41
146 166 2.299993 TAGCTCTGGCAACGAGAATG 57.700 50.000 7.85 0.00 41.70 2.67
154 174 0.447801 GCAACGAGAATGACGGCAAT 59.552 50.000 0.00 0.00 34.93 3.56
210 286 4.036027 CGGTGCTCTAAATGATTCAGCAAT 59.964 41.667 7.68 0.00 32.46 3.56
272 353 7.255520 CCTGTTTACAGTGAGTAGTACTGACTT 60.256 40.741 18.48 12.73 39.67 3.01
308 389 5.992217 CAGCTTAAATACCAGGTGTCTATCC 59.008 44.000 0.76 0.00 34.44 2.59
309 390 5.665812 AGCTTAAATACCAGGTGTCTATCCA 59.334 40.000 0.76 0.00 0.00 3.41
310 391 6.330250 AGCTTAAATACCAGGTGTCTATCCAT 59.670 38.462 0.76 0.00 0.00 3.41
311 392 6.651225 GCTTAAATACCAGGTGTCTATCCATC 59.349 42.308 0.76 0.00 0.00 3.51
312 393 7.473511 GCTTAAATACCAGGTGTCTATCCATCT 60.474 40.741 0.76 0.00 0.00 2.90
313 394 6.831664 AAATACCAGGTGTCTATCCATCTT 57.168 37.500 0.76 0.00 0.00 2.40
315 396 3.454858 ACCAGGTGTCTATCCATCTTGT 58.545 45.455 0.00 0.00 0.00 3.16
316 397 3.846588 ACCAGGTGTCTATCCATCTTGTT 59.153 43.478 0.00 0.00 0.00 2.83
317 398 5.030147 ACCAGGTGTCTATCCATCTTGTTA 58.970 41.667 0.00 0.00 0.00 2.41
318 399 5.667626 ACCAGGTGTCTATCCATCTTGTTAT 59.332 40.000 0.00 0.00 0.00 1.89
319 400 6.844388 ACCAGGTGTCTATCCATCTTGTTATA 59.156 38.462 0.00 0.00 0.00 0.98
321 402 7.821359 CCAGGTGTCTATCCATCTTGTTATATG 59.179 40.741 0.00 0.00 0.00 1.78
322 403 8.588472 CAGGTGTCTATCCATCTTGTTATATGA 58.412 37.037 0.00 0.00 0.00 2.15
323 404 9.331466 AGGTGTCTATCCATCTTGTTATATGAT 57.669 33.333 0.00 0.00 0.00 2.45
324 405 9.376075 GGTGTCTATCCATCTTGTTATATGATG 57.624 37.037 0.00 0.00 39.46 3.07
335 416 9.778741 ATCTTGTTATATGATGAAATGTACCGT 57.221 29.630 0.00 0.00 0.00 4.83
342 423 8.827177 ATATGATGAAATGTACCGTAAATCGT 57.173 30.769 0.00 0.00 37.94 3.73
343 424 9.917129 ATATGATGAAATGTACCGTAAATCGTA 57.083 29.630 0.00 0.00 37.94 3.43
344 425 8.651391 ATGATGAAATGTACCGTAAATCGTAA 57.349 30.769 0.00 0.00 37.94 3.18
345 426 7.897920 TGATGAAATGTACCGTAAATCGTAAC 58.102 34.615 0.00 0.00 37.94 2.50
346 427 7.544915 TGATGAAATGTACCGTAAATCGTAACA 59.455 33.333 0.00 0.00 36.95 2.41
349 430 3.843999 TGTACCGTAAATCGTAACACCC 58.156 45.455 0.00 0.00 37.94 4.61
350 431 3.509575 TGTACCGTAAATCGTAACACCCT 59.490 43.478 0.00 0.00 37.94 4.34
351 432 4.702612 TGTACCGTAAATCGTAACACCCTA 59.297 41.667 0.00 0.00 37.94 3.53
352 433 4.376340 ACCGTAAATCGTAACACCCTAG 57.624 45.455 0.00 0.00 37.94 3.02
392 3611 3.327172 CCATCTATTCATGCCTCTGACCT 59.673 47.826 0.00 0.00 0.00 3.85
397 3616 7.473735 TCTATTCATGCCTCTGACCTAATAG 57.526 40.000 0.00 0.00 0.00 1.73
541 3762 9.538508 AATGCCTTATTAATTGCTGAAATCTTC 57.461 29.630 0.00 0.00 0.00 2.87
748 3972 4.457257 AGCAGAAATGTCTTCTTTAGTGCC 59.543 41.667 0.00 0.00 28.78 5.01
771 4002 7.757624 TGCCGGAATCTGTTTTTAATATGAAAC 59.242 33.333 5.05 0.00 36.53 2.78
774 4005 7.431084 CGGAATCTGTTTTTAATATGAAACCGG 59.569 37.037 0.00 0.00 35.44 5.28
792 4023 7.228906 TGAAACCGGTTATCAAGTGTTGAAATA 59.771 33.333 22.60 0.00 43.95 1.40
928 4159 2.574006 TGCTGGATCTTTTCTGCACT 57.426 45.000 0.00 0.00 32.09 4.40
1087 4339 2.279741 CACCTACTGCGCAATGTATGT 58.720 47.619 13.05 11.45 0.00 2.29
1088 4340 3.453424 CACCTACTGCGCAATGTATGTA 58.547 45.455 13.05 8.19 0.00 2.29
1089 4341 4.058124 CACCTACTGCGCAATGTATGTAT 58.942 43.478 13.05 0.00 0.00 2.29
1090 4342 4.058124 ACCTACTGCGCAATGTATGTATG 58.942 43.478 13.05 8.62 0.00 2.39
1101 4353 5.392919 GCAATGTATGTATGCACTTCCACAA 60.393 40.000 0.00 0.00 39.81 3.33
1102 4354 5.818136 ATGTATGTATGCACTTCCACAAC 57.182 39.130 0.00 0.00 0.00 3.32
1103 4355 3.682377 TGTATGTATGCACTTCCACAACG 59.318 43.478 0.00 0.00 0.00 4.10
1104 4356 0.871722 TGTATGCACTTCCACAACGC 59.128 50.000 0.00 0.00 0.00 4.84
1110 4362 1.071605 CACTTCCACAACGCTAGAGC 58.928 55.000 0.00 0.00 37.78 4.09
1130 4382 7.667575 AGAGCTATCAATTCTTTCTCACCTA 57.332 36.000 0.00 0.00 0.00 3.08
1147 4399 8.078060 TCTCACCTATCATTGTCTAATGTTGA 57.922 34.615 0.00 0.00 43.33 3.18
1227 4494 6.971726 TCTGTTGTTCCATATATAGGTCGT 57.028 37.500 0.00 0.00 0.00 4.34
1236 4505 6.598503 TCCATATATAGGTCGTATCATCGGT 58.401 40.000 0.00 0.00 0.00 4.69
1254 6125 2.338500 GGTGAAGAAGACGTGGATGAC 58.662 52.381 0.00 0.00 0.00 3.06
1278 6149 6.183360 ACGAGAAGATCAATTTACCGTATGGA 60.183 38.462 8.33 0.00 39.21 3.41
1365 9173 1.829456 CTACCCGTCCATGGATGCA 59.171 57.895 26.18 13.26 0.00 3.96
1395 9209 0.398318 ACTGTCTGAAACCCTCTGCC 59.602 55.000 0.00 0.00 0.00 4.85
1468 12238 2.555199 CCGCCTCTTCATTAGGTTCAG 58.445 52.381 0.00 0.00 36.43 3.02
1474 12244 5.123027 GCCTCTTCATTAGGTTCAGTTTGAG 59.877 44.000 0.00 0.00 36.43 3.02
1477 12247 7.308229 CCTCTTCATTAGGTTCAGTTTGAGTTG 60.308 40.741 0.00 0.00 0.00 3.16
1479 12249 5.129634 TCATTAGGTTCAGTTTGAGTTGCA 58.870 37.500 0.00 0.00 0.00 4.08
1483 12253 7.759489 TTAGGTTCAGTTTGAGTTGCATATT 57.241 32.000 0.00 0.00 0.00 1.28
1487 12257 7.439056 AGGTTCAGTTTGAGTTGCATATTTTTG 59.561 33.333 0.00 0.00 0.00 2.44
1488 12258 7.437862 GGTTCAGTTTGAGTTGCATATTTTTGA 59.562 33.333 0.00 0.00 0.00 2.69
1492 12263 6.421801 AGTTTGAGTTGCATATTTTTGACTGC 59.578 34.615 0.00 0.00 35.21 4.40
1508 12279 4.883083 TGACTGCGACCTAATGGATATTC 58.117 43.478 0.00 0.00 37.04 1.75
1617 12392 2.433239 ACCAATTATCGCGGGTAACTCT 59.567 45.455 6.13 0.00 0.00 3.24
1672 12448 1.209127 GGGTGAAAACGCACATCCG 59.791 57.895 0.00 0.00 40.52 4.18
1673 12449 1.231958 GGGTGAAAACGCACATCCGA 61.232 55.000 0.00 0.00 40.52 4.55
1674 12450 0.165944 GGTGAAAACGCACATCCGAG 59.834 55.000 0.00 0.00 40.52 4.63
1680 12456 2.163818 AACGCACATCCGAGAAGAAA 57.836 45.000 0.00 0.00 0.00 2.52
1742 12518 5.065914 TGATTCTCAAACCTTGGTGAAGAG 58.934 41.667 0.00 2.04 31.27 2.85
1775 12551 2.615262 GATGACCTCCGTCCGCTGTC 62.615 65.000 0.00 0.00 38.32 3.51
1789 12565 3.943381 TCCGCTGTCGATCTAGAAAACTA 59.057 43.478 0.00 0.00 38.10 2.24
1820 12596 3.383223 AGGAGAAGGAGAAAGGAGATGG 58.617 50.000 0.00 0.00 0.00 3.51
1852 12628 4.642466 AAGAAGACGGGAGGAAGAAAAT 57.358 40.909 0.00 0.00 0.00 1.82
1853 12629 5.757099 AAGAAGACGGGAGGAAGAAAATA 57.243 39.130 0.00 0.00 0.00 1.40
1857 12633 3.133183 AGACGGGAGGAAGAAAATAGAGC 59.867 47.826 0.00 0.00 0.00 4.09
1861 12637 3.118738 GGGAGGAAGAAAATAGAGCACGA 60.119 47.826 0.00 0.00 0.00 4.35
1863 12639 5.119694 GGAGGAAGAAAATAGAGCACGAAT 58.880 41.667 0.00 0.00 0.00 3.34
1877 12653 3.186613 AGCACGAATCGAAGGAAGAAAAC 59.813 43.478 10.55 0.00 0.00 2.43
1881 12657 5.050363 CACGAATCGAAGGAAGAAAACAGAA 60.050 40.000 10.55 0.00 0.00 3.02
1921 12697 1.470285 CGGCCCGATAAGAGAACGAAA 60.470 52.381 0.00 0.00 0.00 3.46
1922 12698 2.202566 GGCCCGATAAGAGAACGAAAG 58.797 52.381 0.00 0.00 0.00 2.62
1923 12699 2.159142 GGCCCGATAAGAGAACGAAAGA 60.159 50.000 0.00 0.00 0.00 2.52
1924 12700 2.858941 GCCCGATAAGAGAACGAAAGAC 59.141 50.000 0.00 0.00 0.00 3.01
1925 12701 3.675228 GCCCGATAAGAGAACGAAAGACA 60.675 47.826 0.00 0.00 0.00 3.41
1927 12703 4.482386 CCGATAAGAGAACGAAAGACACA 58.518 43.478 0.00 0.00 0.00 3.72
1929 12705 4.559251 CGATAAGAGAACGAAAGACACAGG 59.441 45.833 0.00 0.00 0.00 4.00
1930 12706 2.821991 AGAGAACGAAAGACACAGGG 57.178 50.000 0.00 0.00 0.00 4.45
1931 12707 1.344763 AGAGAACGAAAGACACAGGGG 59.655 52.381 0.00 0.00 0.00 4.79
1932 12708 0.396811 AGAACGAAAGACACAGGGGG 59.603 55.000 0.00 0.00 0.00 5.40
1992 13949 3.309954 GTGAAACCTATGTTCCGCTCATC 59.690 47.826 0.00 0.00 32.15 2.92
2051 14008 3.432262 GGCCGGCCCATTAATTAGT 57.568 52.632 36.64 0.00 0.00 2.24
2052 14009 2.572209 GGCCGGCCCATTAATTAGTA 57.428 50.000 36.64 0.00 0.00 1.82
2053 14010 2.156917 GGCCGGCCCATTAATTAGTAC 58.843 52.381 36.64 3.61 0.00 2.73
2054 14011 1.802365 GCCGGCCCATTAATTAGTACG 59.198 52.381 18.11 0.00 0.00 3.67
2055 14012 2.548493 GCCGGCCCATTAATTAGTACGA 60.548 50.000 18.11 0.00 0.00 3.43
2056 14013 3.867216 GCCGGCCCATTAATTAGTACGAT 60.867 47.826 18.11 0.00 0.00 3.73
2060 14017 6.368213 CGGCCCATTAATTAGTACGATTTTC 58.632 40.000 0.00 0.00 0.00 2.29
2087 14044 4.809455 TTTTTCGTGCGTTTTCTGTTTC 57.191 36.364 0.00 0.00 0.00 2.78
2093 14050 5.629097 TCGTGCGTTTTCTGTTTCTTTTTA 58.371 33.333 0.00 0.00 0.00 1.52
2095 14052 6.748198 TCGTGCGTTTTCTGTTTCTTTTTATT 59.252 30.769 0.00 0.00 0.00 1.40
2096 14053 7.273815 TCGTGCGTTTTCTGTTTCTTTTTATTT 59.726 29.630 0.00 0.00 0.00 1.40
2099 14056 9.748100 TGCGTTTTCTGTTTCTTTTTATTTTTC 57.252 25.926 0.00 0.00 0.00 2.29
2100 14057 9.967245 GCGTTTTCTGTTTCTTTTTATTTTTCT 57.033 25.926 0.00 0.00 0.00 2.52
2325 14300 7.040062 TGTCCAAATACGAATCTGTTCCAAATT 60.040 33.333 0.00 0.00 0.00 1.82
2342 14317 6.303021 CCAAATTTGGTTTGTTCAATCCTG 57.697 37.500 26.34 0.00 44.58 3.86
2374 14349 7.031372 CCTTAACACAATCCAATCTGAATGTG 58.969 38.462 7.48 7.48 42.78 3.21
2375 14350 5.395682 AACACAATCCAATCTGAATGTGG 57.604 39.130 12.34 5.85 41.74 4.17
2376 14351 4.410099 ACACAATCCAATCTGAATGTGGT 58.590 39.130 12.34 0.00 41.74 4.16
2377 14352 4.834496 ACACAATCCAATCTGAATGTGGTT 59.166 37.500 12.34 0.00 41.74 3.67
2378 14353 5.305128 ACACAATCCAATCTGAATGTGGTTT 59.695 36.000 12.34 2.17 41.74 3.27
2379 14354 5.865552 CACAATCCAATCTGAATGTGGTTTC 59.134 40.000 2.12 0.00 35.67 2.78
2380 14355 5.539574 ACAATCCAATCTGAATGTGGTTTCA 59.460 36.000 5.60 0.00 34.55 2.69
2381 14356 6.041865 ACAATCCAATCTGAATGTGGTTTCAA 59.958 34.615 5.60 0.00 35.31 2.69
2382 14357 6.669125 ATCCAATCTGAATGTGGTTTCAAA 57.331 33.333 5.60 0.00 35.31 2.69
2383 14358 6.669125 TCCAATCTGAATGTGGTTTCAAAT 57.331 33.333 5.60 0.00 35.31 2.32
2384 14359 7.065120 TCCAATCTGAATGTGGTTTCAAATT 57.935 32.000 5.60 0.00 35.31 1.82
2385 14360 7.507829 TCCAATCTGAATGTGGTTTCAAATTT 58.492 30.769 5.60 0.00 35.31 1.82
2386 14361 7.441760 TCCAATCTGAATGTGGTTTCAAATTTG 59.558 33.333 12.15 12.15 35.31 2.32
2387 14362 7.308109 CCAATCTGAATGTGGTTTCAAATTTGG 60.308 37.037 17.90 0.12 35.31 3.28
2388 14363 6.477053 TCTGAATGTGGTTTCAAATTTGGA 57.523 33.333 17.90 6.72 35.31 3.53
2389 14364 7.065120 TCTGAATGTGGTTTCAAATTTGGAT 57.935 32.000 17.90 0.00 35.31 3.41
2390 14365 6.930164 TCTGAATGTGGTTTCAAATTTGGATG 59.070 34.615 17.90 0.00 35.31 3.51
2391 14366 5.469421 TGAATGTGGTTTCAAATTTGGATGC 59.531 36.000 17.90 5.77 31.30 3.91
2392 14367 3.388308 TGTGGTTTCAAATTTGGATGCG 58.612 40.909 17.90 0.00 0.00 4.73
2393 14368 2.736192 GTGGTTTCAAATTTGGATGCGG 59.264 45.455 17.90 0.00 0.00 5.69
2394 14369 1.731709 GGTTTCAAATTTGGATGCGGC 59.268 47.619 17.90 0.00 0.00 6.53
2395 14370 2.411904 GTTTCAAATTTGGATGCGGCA 58.588 42.857 17.90 4.58 0.00 5.69
2396 14371 2.805099 GTTTCAAATTTGGATGCGGCAA 59.195 40.909 17.90 0.00 0.00 4.52
2397 14372 3.331478 TTCAAATTTGGATGCGGCAAT 57.669 38.095 17.90 0.00 0.00 3.56
2398 14373 2.891112 TCAAATTTGGATGCGGCAATC 58.109 42.857 17.90 5.33 0.00 2.67
2399 14374 1.935199 CAAATTTGGATGCGGCAATCC 59.065 47.619 6.82 14.71 45.57 3.01
2403 14378 3.924507 GGATGCGGCAATCCAGTT 58.075 55.556 19.78 0.00 44.85 3.16
2404 14379 2.192605 GGATGCGGCAATCCAGTTT 58.807 52.632 19.78 0.00 44.85 2.66
2405 14380 0.101219 GGATGCGGCAATCCAGTTTC 59.899 55.000 19.78 6.91 44.85 2.78
2406 14381 0.810648 GATGCGGCAATCCAGTTTCA 59.189 50.000 6.82 0.00 0.00 2.69
2407 14382 1.406539 GATGCGGCAATCCAGTTTCAT 59.593 47.619 6.82 0.00 0.00 2.57
2408 14383 1.255882 TGCGGCAATCCAGTTTCATT 58.744 45.000 0.00 0.00 0.00 2.57
2409 14384 1.617850 TGCGGCAATCCAGTTTCATTT 59.382 42.857 0.00 0.00 0.00 2.32
2410 14385 2.036992 TGCGGCAATCCAGTTTCATTTT 59.963 40.909 0.00 0.00 0.00 1.82
2411 14386 2.667969 GCGGCAATCCAGTTTCATTTTC 59.332 45.455 0.00 0.00 0.00 2.29
2412 14387 3.860378 GCGGCAATCCAGTTTCATTTTCA 60.860 43.478 0.00 0.00 0.00 2.69
2413 14388 4.497300 CGGCAATCCAGTTTCATTTTCAT 58.503 39.130 0.00 0.00 0.00 2.57
2414 14389 5.649557 CGGCAATCCAGTTTCATTTTCATA 58.350 37.500 0.00 0.00 0.00 2.15
2415 14390 5.516339 CGGCAATCCAGTTTCATTTTCATAC 59.484 40.000 0.00 0.00 0.00 2.39
2416 14391 6.625740 CGGCAATCCAGTTTCATTTTCATACT 60.626 38.462 0.00 0.00 0.00 2.12
2417 14392 6.753744 GGCAATCCAGTTTCATTTTCATACTC 59.246 38.462 0.00 0.00 0.00 2.59
2418 14393 6.753744 GCAATCCAGTTTCATTTTCATACTCC 59.246 38.462 0.00 0.00 0.00 3.85
2419 14394 7.577426 GCAATCCAGTTTCATTTTCATACTCCA 60.577 37.037 0.00 0.00 0.00 3.86
2420 14395 7.636150 ATCCAGTTTCATTTTCATACTCCAG 57.364 36.000 0.00 0.00 0.00 3.86
2421 14396 6.542821 TCCAGTTTCATTTTCATACTCCAGT 58.457 36.000 0.00 0.00 0.00 4.00
2422 14397 6.655003 TCCAGTTTCATTTTCATACTCCAGTC 59.345 38.462 0.00 0.00 0.00 3.51
2423 14398 6.430925 CCAGTTTCATTTTCATACTCCAGTCA 59.569 38.462 0.00 0.00 0.00 3.41
2424 14399 7.361542 CCAGTTTCATTTTCATACTCCAGTCAG 60.362 40.741 0.00 0.00 0.00 3.51
2425 14400 7.173907 CAGTTTCATTTTCATACTCCAGTCAGT 59.826 37.037 0.00 0.00 0.00 3.41
2426 14401 7.173907 AGTTTCATTTTCATACTCCAGTCAGTG 59.826 37.037 0.00 0.00 0.00 3.66
2427 14402 6.114187 TCATTTTCATACTCCAGTCAGTGT 57.886 37.500 0.00 0.00 0.00 3.55
2428 14403 7.239763 TCATTTTCATACTCCAGTCAGTGTA 57.760 36.000 0.00 0.00 0.00 2.90
2429 14404 7.323420 TCATTTTCATACTCCAGTCAGTGTAG 58.677 38.462 0.00 0.00 0.00 2.74
2430 14405 6.665992 TTTTCATACTCCAGTCAGTGTAGT 57.334 37.500 0.00 0.00 0.00 2.73
2431 14406 5.644977 TTCATACTCCAGTCAGTGTAGTG 57.355 43.478 0.00 0.00 0.00 2.74
2432 14407 4.663334 TCATACTCCAGTCAGTGTAGTGT 58.337 43.478 0.00 0.00 0.00 3.55
2433 14408 5.812286 TCATACTCCAGTCAGTGTAGTGTA 58.188 41.667 0.00 0.00 0.00 2.90
2434 14409 6.424032 TCATACTCCAGTCAGTGTAGTGTAT 58.576 40.000 0.00 0.00 0.00 2.29
2435 14410 7.571025 TCATACTCCAGTCAGTGTAGTGTATA 58.429 38.462 0.00 0.00 0.00 1.47
2436 14411 8.050930 TCATACTCCAGTCAGTGTAGTGTATAA 58.949 37.037 0.00 0.00 0.00 0.98
2437 14412 6.761099 ACTCCAGTCAGTGTAGTGTATAAG 57.239 41.667 0.00 0.00 0.00 1.73
2438 14413 6.246919 ACTCCAGTCAGTGTAGTGTATAAGT 58.753 40.000 0.00 0.00 0.00 2.24
2439 14414 6.720288 ACTCCAGTCAGTGTAGTGTATAAGTT 59.280 38.462 0.00 0.00 0.00 2.66
2440 14415 7.232941 ACTCCAGTCAGTGTAGTGTATAAGTTT 59.767 37.037 0.00 0.00 0.00 2.66
2441 14416 7.959175 TCCAGTCAGTGTAGTGTATAAGTTTT 58.041 34.615 0.00 0.00 0.00 2.43
2442 14417 8.086522 TCCAGTCAGTGTAGTGTATAAGTTTTC 58.913 37.037 0.00 0.00 0.00 2.29
2443 14418 7.061905 CCAGTCAGTGTAGTGTATAAGTTTTCG 59.938 40.741 0.00 0.00 0.00 3.46
2444 14419 6.585322 AGTCAGTGTAGTGTATAAGTTTTCGC 59.415 38.462 0.00 0.00 0.00 4.70
2445 14420 5.570206 TCAGTGTAGTGTATAAGTTTTCGCG 59.430 40.000 0.00 0.00 0.00 5.87
2446 14421 5.344128 CAGTGTAGTGTATAAGTTTTCGCGT 59.656 40.000 5.77 0.00 0.00 6.01
2447 14422 5.922544 AGTGTAGTGTATAAGTTTTCGCGTT 59.077 36.000 5.77 0.00 0.00 4.84
2448 14423 6.088616 AGTGTAGTGTATAAGTTTTCGCGTTC 59.911 38.462 5.77 0.00 0.00 3.95
2449 14424 4.557276 AGTGTATAAGTTTTCGCGTTCG 57.443 40.909 5.77 0.00 0.00 3.95
2450 14425 4.229096 AGTGTATAAGTTTTCGCGTTCGA 58.771 39.130 5.77 0.00 43.89 3.71
2451 14426 4.322804 AGTGTATAAGTTTTCGCGTTCGAG 59.677 41.667 5.77 0.00 46.34 4.04
2452 14427 4.089065 GTGTATAAGTTTTCGCGTTCGAGT 59.911 41.667 5.77 0.00 46.34 4.18
2453 14428 3.967080 ATAAGTTTTCGCGTTCGAGTC 57.033 42.857 5.77 0.00 46.34 3.36
2454 14429 0.857287 AAGTTTTCGCGTTCGAGTCC 59.143 50.000 5.77 0.00 46.34 3.85
2455 14430 0.942884 AGTTTTCGCGTTCGAGTCCC 60.943 55.000 5.77 0.00 46.34 4.46
2456 14431 0.942884 GTTTTCGCGTTCGAGTCCCT 60.943 55.000 5.77 0.00 46.34 4.20
2457 14432 0.665369 TTTTCGCGTTCGAGTCCCTC 60.665 55.000 5.77 0.00 46.34 4.30
2466 14441 3.371063 GAGTCCCTCGTCCGCACA 61.371 66.667 0.00 0.00 0.00 4.57
2467 14442 2.680352 AGTCCCTCGTCCGCACAT 60.680 61.111 0.00 0.00 0.00 3.21
2468 14443 2.227089 GAGTCCCTCGTCCGCACATT 62.227 60.000 0.00 0.00 0.00 2.71
2469 14444 1.375523 GTCCCTCGTCCGCACATTT 60.376 57.895 0.00 0.00 0.00 2.32
2470 14445 1.375396 TCCCTCGTCCGCACATTTG 60.375 57.895 0.00 0.00 0.00 2.32
2471 14446 2.480555 CCTCGTCCGCACATTTGC 59.519 61.111 0.00 0.00 46.21 3.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 0.320421 GGGAGTTGCTGAACGCTACA 60.320 55.000 0.00 0.00 45.10 2.74
77 78 2.268920 GTCATTGCCTCTGCGGGA 59.731 61.111 0.00 0.00 41.78 5.14
80 81 0.737367 TTCTCGTCATTGCCTCTGCG 60.737 55.000 0.00 0.00 41.78 5.18
146 166 3.969642 CTTTGCCGCCATTGCCGTC 62.970 63.158 0.00 0.00 0.00 4.79
154 174 1.752358 TTGATTTGCCTTTGCCGCCA 61.752 50.000 0.00 0.00 36.33 5.69
158 178 2.611224 CCTCTGTTGATTTGCCTTTGCC 60.611 50.000 0.00 0.00 36.33 4.52
159 179 2.297033 TCCTCTGTTGATTTGCCTTTGC 59.703 45.455 0.00 0.00 38.26 3.68
162 182 4.038271 TGATCCTCTGTTGATTTGCCTT 57.962 40.909 0.00 0.00 0.00 4.35
164 184 3.129988 CCTTGATCCTCTGTTGATTTGCC 59.870 47.826 0.00 0.00 0.00 4.52
165 185 3.428589 GCCTTGATCCTCTGTTGATTTGC 60.429 47.826 0.00 0.00 0.00 3.68
166 186 3.181503 CGCCTTGATCCTCTGTTGATTTG 60.182 47.826 0.00 0.00 0.00 2.32
170 240 0.250234 CCGCCTTGATCCTCTGTTGA 59.750 55.000 0.00 0.00 0.00 3.18
210 286 5.581126 ACAGTTCAGCAAGTCAAAATGAA 57.419 34.783 0.00 0.00 0.00 2.57
236 312 2.851195 CTGTAAACAGGGAGCACAACT 58.149 47.619 2.01 0.00 40.20 3.16
272 353 9.378551 CTGGTATTTAAGCTGACATAACACTAA 57.621 33.333 0.00 0.00 0.00 2.24
309 390 9.778741 ACGGTACATTTCATCATATAACAAGAT 57.221 29.630 0.00 0.00 0.00 2.40
328 409 9.432442 CACTAGGGTGTTACGATTTACGGTACA 62.432 44.444 0.00 0.00 41.15 2.90
329 410 7.165196 CACTAGGGTGTTACGATTTACGGTAC 61.165 46.154 0.00 0.00 41.15 3.34
330 411 5.163663 CACTAGGGTGTTACGATTTACGGTA 60.164 44.000 0.00 0.00 41.15 4.02
331 412 4.380867 CACTAGGGTGTTACGATTTACGGT 60.381 45.833 0.00 0.00 41.15 4.83
346 427 3.197983 GTGCTCCAGAATAACACTAGGGT 59.802 47.826 0.00 0.00 0.00 4.34
397 3616 9.100554 TCATCATTAAAATTGCCATCAAACATC 57.899 29.630 0.00 0.00 35.56 3.06
713 3936 9.899226 GAAGACATTTCTGCTATAAAAAGTTGT 57.101 29.630 0.00 0.00 29.98 3.32
725 3949 4.457257 GGCACTAAAGAAGACATTTCTGCT 59.543 41.667 0.00 0.00 39.86 4.24
728 3952 4.003648 CCGGCACTAAAGAAGACATTTCT 58.996 43.478 0.00 0.00 0.00 2.52
742 3966 7.771361 TCATATTAAAAACAGATTCCGGCACTA 59.229 33.333 0.00 0.00 0.00 2.74
748 3972 7.431084 CCGGTTTCATATTAAAAACAGATTCCG 59.569 37.037 0.00 0.00 37.16 4.30
771 4002 5.971202 GCATATTTCAACACTTGATAACCGG 59.029 40.000 0.00 0.00 39.84 5.28
792 4023 7.558604 AGACATGCCAACAATTAATAAAGCAT 58.441 30.769 0.00 0.00 40.15 3.79
804 4035 9.237187 TCAGTTATAAATAAGACATGCCAACAA 57.763 29.630 0.00 0.00 0.00 2.83
845 4076 5.466728 GCAGCAATTAATAAGACATCCGAGA 59.533 40.000 0.00 0.00 0.00 4.04
913 4144 3.876320 GAGATCCAGTGCAGAAAAGATCC 59.124 47.826 0.00 0.00 32.38 3.36
928 4159 7.312247 CCTGTATATAGAGAGAAGGGAGATCCA 60.312 44.444 8.44 0.00 38.24 3.41
1087 4339 2.232696 TCTAGCGTTGTGGAAGTGCATA 59.767 45.455 0.00 0.00 0.00 3.14
1088 4340 1.001974 TCTAGCGTTGTGGAAGTGCAT 59.998 47.619 0.00 0.00 0.00 3.96
1089 4341 0.391228 TCTAGCGTTGTGGAAGTGCA 59.609 50.000 0.00 0.00 0.00 4.57
1090 4342 1.071605 CTCTAGCGTTGTGGAAGTGC 58.928 55.000 0.00 0.00 0.00 4.40
1103 4355 6.423604 GGTGAGAAAGAATTGATAGCTCTAGC 59.576 42.308 0.00 0.00 42.49 3.42
1104 4356 7.725251 AGGTGAGAAAGAATTGATAGCTCTAG 58.275 38.462 0.00 0.00 0.00 2.43
1130 4382 9.985730 AACAAACAATCAACATTAGACAATGAT 57.014 25.926 4.46 0.00 43.67 2.45
1187 4443 9.383519 GAACAACAGATGAATTAGTCCTTGATA 57.616 33.333 0.00 0.00 0.00 2.15
1190 4446 6.430925 TGGAACAACAGATGAATTAGTCCTTG 59.569 38.462 0.00 0.00 31.92 3.61
1191 4447 6.542821 TGGAACAACAGATGAATTAGTCCTT 58.457 36.000 0.00 0.00 31.92 3.36
1192 4448 6.126863 TGGAACAACAGATGAATTAGTCCT 57.873 37.500 0.00 0.00 31.92 3.85
1227 4494 3.181490 CCACGTCTTCTTCACCGATGATA 60.181 47.826 0.00 0.00 33.85 2.15
1236 4505 2.347697 CGTCATCCACGTCTTCTTCA 57.652 50.000 0.00 0.00 44.07 3.02
1254 6125 6.144080 GTCCATACGGTAAATTGATCTTCTCG 59.856 42.308 0.00 0.00 0.00 4.04
1278 6149 4.272504 CACGGTCTATTGTTGACACAAAGT 59.727 41.667 0.00 0.00 46.17 2.66
1365 9173 4.276926 GGTTTCAGACAGTCTTTCTTGCAT 59.723 41.667 0.00 0.00 0.00 3.96
1414 9228 1.534729 AAAGGAGAACGGGTCATTGC 58.465 50.000 0.00 0.00 0.00 3.56
1468 12238 6.584056 GCAGTCAAAAATATGCAACTCAAAC 58.416 36.000 0.00 0.00 38.54 2.93
1474 12244 3.608073 GGTCGCAGTCAAAAATATGCAAC 59.392 43.478 0.00 0.00 38.60 4.17
1477 12247 3.764885 AGGTCGCAGTCAAAAATATGC 57.235 42.857 0.00 0.00 35.32 3.14
1479 12249 6.119536 TCCATTAGGTCGCAGTCAAAAATAT 58.880 36.000 0.00 0.00 35.89 1.28
1483 12253 3.410631 TCCATTAGGTCGCAGTCAAAA 57.589 42.857 0.00 0.00 35.89 2.44
1487 12257 4.926238 CAGAATATCCATTAGGTCGCAGTC 59.074 45.833 0.00 0.00 35.89 3.51
1488 12258 4.345257 ACAGAATATCCATTAGGTCGCAGT 59.655 41.667 0.00 0.00 35.89 4.40
1552 12324 4.084745 GCAACATGTCAAATCAAACTGCAG 60.085 41.667 13.48 13.48 0.00 4.41
1592 12367 1.957668 ACCCGCGATAATTGGTAACC 58.042 50.000 8.23 0.00 0.00 2.85
1637 12412 0.251916 CCCCGCTGGACAGTGATTTA 59.748 55.000 14.03 0.00 41.24 1.40
1643 12418 1.990160 TTTTCACCCCGCTGGACAGT 61.990 55.000 0.00 0.00 38.00 3.55
1647 12422 2.281208 CGTTTTCACCCCGCTGGA 60.281 61.111 0.00 0.00 38.00 3.86
1696 12472 3.782443 GACCGCCATCCCCGTCTT 61.782 66.667 0.00 0.00 0.00 3.01
1758 12534 3.371063 GACAGCGGACGGAGGTCA 61.371 66.667 0.00 0.00 45.28 4.02
1775 12551 1.779724 GCGCGGTAGTTTTCTAGATCG 59.220 52.381 8.83 0.00 32.55 3.69
1789 12565 4.436998 CTTCTCCTTCCGCGCGGT 62.437 66.667 44.16 0.00 36.47 5.68
1820 12596 4.884247 TCCCGTCTTCTTTTCTTCTTCTC 58.116 43.478 0.00 0.00 0.00 2.87
1852 12628 3.014623 TCTTCCTTCGATTCGTGCTCTA 58.985 45.455 5.89 0.00 0.00 2.43
1853 12629 1.819288 TCTTCCTTCGATTCGTGCTCT 59.181 47.619 5.89 0.00 0.00 4.09
1857 12633 4.447724 TCTGTTTTCTTCCTTCGATTCGTG 59.552 41.667 5.89 0.80 0.00 4.35
1861 12637 6.150140 CCATCTTCTGTTTTCTTCCTTCGATT 59.850 38.462 0.00 0.00 0.00 3.34
1863 12639 4.997395 CCATCTTCTGTTTTCTTCCTTCGA 59.003 41.667 0.00 0.00 0.00 3.71
1877 12653 0.539051 AGCTCGGTTCCCATCTTCTG 59.461 55.000 0.00 0.00 0.00 3.02
1881 12657 2.370445 CCCAGCTCGGTTCCCATCT 61.370 63.158 0.00 0.00 0.00 2.90
1907 12683 4.865365 CCCTGTGTCTTTCGTTCTCTTATC 59.135 45.833 0.00 0.00 0.00 1.75
1950 12726 2.729862 CGTAGGTCGCCGCATAGC 60.730 66.667 0.00 0.00 0.00 2.97
1971 13928 3.531538 GATGAGCGGAACATAGGTTTCA 58.468 45.455 0.00 0.00 37.36 2.69
1992 13949 1.203313 GAACCGAAAACTGTCCGCG 59.797 57.895 0.00 0.00 0.00 6.46
2000 13957 1.203313 CGTGAGCGGAACCGAAAAC 59.797 57.895 17.63 9.46 42.83 2.43
2070 14027 3.750639 AAAGAAACAGAAAACGCACGA 57.249 38.095 0.00 0.00 0.00 4.35
2071 14028 4.816277 AAAAAGAAACAGAAAACGCACG 57.184 36.364 0.00 0.00 0.00 5.34
2072 14029 9.536558 AAAAATAAAAAGAAACAGAAAACGCAC 57.463 25.926 0.00 0.00 0.00 5.34
2182 14139 7.467623 TCAAAACCAAAATTTGTTCCAAATCG 58.532 30.769 4.92 0.00 38.57 3.34
2187 14144 7.693969 ATGTTCAAAACCAAAATTTGTTCCA 57.306 28.000 4.92 0.00 38.57 3.53
2188 14145 8.978564 AAATGTTCAAAACCAAAATTTGTTCC 57.021 26.923 4.92 0.00 38.57 3.62
2238 14212 6.920758 TCCGTTCAAATTCGAAATTTGTTCAT 59.079 30.769 21.58 0.00 39.36 2.57
2251 14225 5.528870 AGTTCCACATTTCCGTTCAAATTC 58.471 37.500 0.00 0.00 0.00 2.17
2325 14300 3.117322 TCCTCCAGGATTGAACAAACCAA 60.117 43.478 14.40 0.00 39.78 3.67
2342 14317 4.028993 TGGATTGTGTTAAGGTTCCTCC 57.971 45.455 0.00 0.00 0.00 4.30
2353 14328 4.834496 ACCACATTCAGATTGGATTGTGTT 59.166 37.500 13.72 1.59 42.93 3.32
2374 14349 1.731709 GCCGCATCCAAATTTGAAACC 59.268 47.619 19.86 4.57 0.00 3.27
2375 14350 2.411904 TGCCGCATCCAAATTTGAAAC 58.588 42.857 19.86 5.25 0.00 2.78
2376 14351 2.827800 TGCCGCATCCAAATTTGAAA 57.172 40.000 19.86 7.65 0.00 2.69
2377 14352 2.827800 TTGCCGCATCCAAATTTGAA 57.172 40.000 19.86 0.00 0.00 2.69
2378 14353 2.418471 GGATTGCCGCATCCAAATTTGA 60.418 45.455 19.86 6.29 36.95 2.69
2379 14354 1.935199 GGATTGCCGCATCCAAATTTG 59.065 47.619 11.40 11.40 36.95 2.32
2380 14355 1.554160 TGGATTGCCGCATCCAAATTT 59.446 42.857 17.22 0.00 43.39 1.82
2381 14356 1.137479 CTGGATTGCCGCATCCAAATT 59.863 47.619 18.98 0.00 45.38 1.82
2382 14357 0.748450 CTGGATTGCCGCATCCAAAT 59.252 50.000 18.98 1.02 45.38 2.32
2383 14358 0.611618 ACTGGATTGCCGCATCCAAA 60.612 50.000 18.98 4.73 45.38 3.28
2384 14359 0.611618 AACTGGATTGCCGCATCCAA 60.612 50.000 18.98 8.64 45.38 3.53
2385 14360 0.611618 AAACTGGATTGCCGCATCCA 60.612 50.000 18.01 18.01 44.07 3.41
2386 14361 0.101219 GAAACTGGATTGCCGCATCC 59.899 55.000 12.42 12.42 36.79 3.51
2387 14362 0.810648 TGAAACTGGATTGCCGCATC 59.189 50.000 0.00 0.00 36.79 3.91
2388 14363 1.477553 ATGAAACTGGATTGCCGCAT 58.522 45.000 0.00 0.00 36.79 4.73
2389 14364 1.255882 AATGAAACTGGATTGCCGCA 58.744 45.000 0.00 0.00 36.79 5.69
2390 14365 2.368655 AAATGAAACTGGATTGCCGC 57.631 45.000 0.00 0.00 36.79 6.53
2391 14366 3.911868 TGAAAATGAAACTGGATTGCCG 58.088 40.909 0.00 0.00 36.79 5.69
2392 14367 6.633856 AGTATGAAAATGAAACTGGATTGCC 58.366 36.000 0.00 0.00 0.00 4.52
2393 14368 6.753744 GGAGTATGAAAATGAAACTGGATTGC 59.246 38.462 0.00 0.00 0.00 3.56
2394 14369 7.829725 TGGAGTATGAAAATGAAACTGGATTG 58.170 34.615 0.00 0.00 0.00 2.67
2395 14370 7.671398 ACTGGAGTATGAAAATGAAACTGGATT 59.329 33.333 0.00 0.00 0.00 3.01
2396 14371 7.177878 ACTGGAGTATGAAAATGAAACTGGAT 58.822 34.615 0.00 0.00 0.00 3.41
2397 14372 6.542821 ACTGGAGTATGAAAATGAAACTGGA 58.457 36.000 0.00 0.00 0.00 3.86
2398 14373 6.430925 TGACTGGAGTATGAAAATGAAACTGG 59.569 38.462 0.00 0.00 0.00 4.00
2399 14374 7.173907 ACTGACTGGAGTATGAAAATGAAACTG 59.826 37.037 0.00 0.00 0.00 3.16
2400 14375 7.173907 CACTGACTGGAGTATGAAAATGAAACT 59.826 37.037 0.00 0.00 0.00 2.66
2401 14376 7.041098 ACACTGACTGGAGTATGAAAATGAAAC 60.041 37.037 0.00 0.00 0.00 2.78
2402 14377 6.998074 ACACTGACTGGAGTATGAAAATGAAA 59.002 34.615 0.00 0.00 0.00 2.69
2403 14378 6.533730 ACACTGACTGGAGTATGAAAATGAA 58.466 36.000 0.00 0.00 0.00 2.57
2404 14379 6.114187 ACACTGACTGGAGTATGAAAATGA 57.886 37.500 0.00 0.00 0.00 2.57
2405 14380 7.063898 CACTACACTGACTGGAGTATGAAAATG 59.936 40.741 0.00 0.00 42.95 2.32
2406 14381 7.099764 CACTACACTGACTGGAGTATGAAAAT 58.900 38.462 0.00 0.00 42.95 1.82
2407 14382 6.041637 ACACTACACTGACTGGAGTATGAAAA 59.958 38.462 0.00 0.00 42.95 2.29
2408 14383 5.538813 ACACTACACTGACTGGAGTATGAAA 59.461 40.000 0.00 0.00 42.95 2.69
2409 14384 5.077564 ACACTACACTGACTGGAGTATGAA 58.922 41.667 0.00 0.00 42.95 2.57
2410 14385 4.663334 ACACTACACTGACTGGAGTATGA 58.337 43.478 0.00 0.00 42.95 2.15
2411 14386 6.701145 ATACACTACACTGACTGGAGTATG 57.299 41.667 0.00 0.00 42.95 2.39
2412 14387 8.053963 ACTTATACACTACACTGACTGGAGTAT 58.946 37.037 0.00 0.00 42.95 2.12
2413 14388 7.400439 ACTTATACACTACACTGACTGGAGTA 58.600 38.462 0.00 0.00 42.95 2.59
2414 14389 6.246919 ACTTATACACTACACTGACTGGAGT 58.753 40.000 0.00 0.00 46.18 3.85
2415 14390 6.761099 ACTTATACACTACACTGACTGGAG 57.239 41.667 0.00 0.00 36.78 3.86
2416 14391 7.534723 AAACTTATACACTACACTGACTGGA 57.465 36.000 0.00 0.00 0.00 3.86
2417 14392 7.061905 CGAAAACTTATACACTACACTGACTGG 59.938 40.741 0.00 0.00 0.00 4.00
2418 14393 7.410513 GCGAAAACTTATACACTACACTGACTG 60.411 40.741 0.00 0.00 0.00 3.51
2419 14394 6.585322 GCGAAAACTTATACACTACACTGACT 59.415 38.462 0.00 0.00 0.00 3.41
2420 14395 6.452090 CGCGAAAACTTATACACTACACTGAC 60.452 42.308 0.00 0.00 0.00 3.51
2421 14396 5.570206 CGCGAAAACTTATACACTACACTGA 59.430 40.000 0.00 0.00 0.00 3.41
2422 14397 5.344128 ACGCGAAAACTTATACACTACACTG 59.656 40.000 15.93 0.00 0.00 3.66
2423 14398 5.464168 ACGCGAAAACTTATACACTACACT 58.536 37.500 15.93 0.00 0.00 3.55
2424 14399 5.752098 ACGCGAAAACTTATACACTACAC 57.248 39.130 15.93 0.00 0.00 2.90
2425 14400 5.059587 CGAACGCGAAAACTTATACACTACA 59.940 40.000 15.93 0.00 40.82 2.74
2426 14401 5.283717 TCGAACGCGAAAACTTATACACTAC 59.716 40.000 15.93 0.00 44.78 2.73
2427 14402 5.389778 TCGAACGCGAAAACTTATACACTA 58.610 37.500 15.93 0.00 44.78 2.74
2428 14403 4.229096 TCGAACGCGAAAACTTATACACT 58.771 39.130 15.93 0.00 44.78 3.55
2429 14404 4.551056 TCGAACGCGAAAACTTATACAC 57.449 40.909 15.93 0.00 44.78 2.90
2451 14426 1.375523 AAATGTGCGGACGAGGGAC 60.376 57.895 1.60 0.00 0.00 4.46
2452 14427 1.375396 CAAATGTGCGGACGAGGGA 60.375 57.895 1.60 0.00 0.00 4.20
2453 14428 3.039202 GCAAATGTGCGGACGAGGG 62.039 63.158 1.60 0.00 41.93 4.30
2454 14429 2.480555 GCAAATGTGCGGACGAGG 59.519 61.111 1.60 0.00 41.93 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.