Multiple sequence alignment - TraesCS2B01G019800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G019800 chr2B 100.000 6238 0 0 307 6544 9128042 9121805 0.000000e+00 11520.0
1 TraesCS2B01G019800 chr2B 94.351 3257 143 19 1092 4333 8994387 8997617 0.000000e+00 4957.0
2 TraesCS2B01G019800 chr2B 83.158 4091 570 54 1487 5496 8386059 8390111 0.000000e+00 3627.0
3 TraesCS2B01G019800 chr2B 84.599 2318 340 11 932 3247 8592546 8594848 0.000000e+00 2287.0
4 TraesCS2B01G019800 chr2B 83.530 1184 148 25 4361 5505 8997792 8998967 0.000000e+00 1062.0
5 TraesCS2B01G019800 chr2B 88.778 499 25 7 5887 6382 8999071 8999541 3.400000e-162 582.0
6 TraesCS2B01G019800 chr2B 81.302 722 102 20 611 1316 8385262 8385966 7.410000e-154 555.0
7 TraesCS2B01G019800 chr2B 82.198 455 59 9 6110 6543 667792348 667792801 8.010000e-99 372.0
8 TraesCS2B01G019800 chr2B 80.000 515 67 17 5978 6482 8671672 8672160 1.350000e-91 348.0
9 TraesCS2B01G019800 chr2B 100.000 60 0 0 1 60 9128348 9128289 1.930000e-20 111.0
10 TraesCS2B01G019800 chr2A 89.998 5139 367 69 376 5436 2495789 2490720 0.000000e+00 6506.0
11 TraesCS2B01G019800 chr2A 85.624 3151 400 28 1474 4584 2321684 2324821 0.000000e+00 3260.0
12 TraesCS2B01G019800 chr2A 83.169 3452 505 42 1548 4937 2881572 2885009 0.000000e+00 3086.0
13 TraesCS2B01G019800 chr2A 84.546 2776 386 24 1546 4284 2363348 2366117 0.000000e+00 2710.0
14 TraesCS2B01G019800 chr2A 84.414 1373 161 30 4177 5503 2381151 2382516 0.000000e+00 1301.0
15 TraesCS2B01G019800 chr2A 84.667 1050 103 25 5521 6544 2325761 2326778 0.000000e+00 994.0
16 TraesCS2B01G019800 chr2A 93.271 535 27 5 6016 6544 2490023 2489492 0.000000e+00 780.0
17 TraesCS2B01G019800 chr2A 93.750 464 21 5 6089 6544 2383022 2383485 0.000000e+00 689.0
18 TraesCS2B01G019800 chr2A 93.396 318 18 2 5527 5842 2490430 2490114 9.940000e-128 468.0
19 TraesCS2B01G019800 chr2A 91.892 259 15 4 5525 5781 2382587 2382841 2.240000e-94 357.0
20 TraesCS2B01G019800 chr2A 77.846 492 101 7 827 1316 1871372 1871857 1.380000e-76 298.0
21 TraesCS2B01G019800 chr2A 92.929 198 10 3 5858 6051 2382829 2383026 1.070000e-72 285.0
22 TraesCS2B01G019800 chr2A 90.361 83 1 1 5865 5940 2490117 2490035 1.160000e-17 102.0
23 TraesCS2B01G019800 chr2A 95.000 60 3 0 1 60 2496004 2495945 1.940000e-15 95.3
24 TraesCS2B01G019800 chr2A 96.429 56 2 0 307 362 2495826 2495771 6.990000e-15 93.5
25 TraesCS2B01G019800 chrUn 87.240 4036 425 48 1478 5455 15918838 15914835 0.000000e+00 4518.0
26 TraesCS2B01G019800 chrUn 83.130 4096 572 56 1482 5496 15550797 15554854 0.000000e+00 3626.0
27 TraesCS2B01G019800 chrUn 82.983 4096 575 59 1482 5496 15775001 15779055 0.000000e+00 3591.0
28 TraesCS2B01G019800 chrUn 83.440 3889 533 51 1482 5298 241628791 241632640 0.000000e+00 3511.0
29 TraesCS2B01G019800 chrUn 84.754 2722 355 28 1474 4180 330378950 330376274 0.000000e+00 2673.0
30 TraesCS2B01G019800 chrUn 84.644 2722 358 28 1474 4180 330402022 330399346 0.000000e+00 2656.0
31 TraesCS2B01G019800 chrUn 84.855 2311 276 36 2467 4722 305054159 305056450 0.000000e+00 2261.0
32 TraesCS2B01G019800 chrUn 83.313 2409 313 38 2319 4665 342417455 342419836 0.000000e+00 2139.0
33 TraesCS2B01G019800 chrUn 83.165 1586 189 31 3134 4665 15556338 15557899 0.000000e+00 1378.0
34 TraesCS2B01G019800 chrUn 83.104 1527 202 29 4021 5496 334804145 334805666 0.000000e+00 1339.0
35 TraesCS2B01G019800 chrUn 87.873 1039 69 25 5525 6544 15914698 15913698 0.000000e+00 1168.0
36 TraesCS2B01G019800 chrUn 87.731 1027 58 21 5525 6544 364735909 364736874 0.000000e+00 1136.0
37 TraesCS2B01G019800 chrUn 82.648 1314 158 25 3402 4665 415025125 415026418 0.000000e+00 1099.0
38 TraesCS2B01G019800 chrUn 88.353 953 54 16 5599 6544 418518220 418519122 0.000000e+00 1092.0
39 TraesCS2B01G019800 chrUn 81.181 728 98 23 611 1316 15549999 15550709 3.450000e-152 549.0
40 TraesCS2B01G019800 chrUn 81.181 728 98 23 611 1316 241627993 241628703 3.450000e-152 549.0
41 TraesCS2B01G019800 chrUn 81.181 728 94 26 611 1316 15774207 15774913 4.460000e-151 545.0
42 TraesCS2B01G019800 chrUn 81.181 728 94 26 611 1316 424221242 424221948 4.460000e-151 545.0
43 TraesCS2B01G019800 chrUn 81.096 730 95 26 611 1316 410123783 410124493 1.600000e-150 544.0
44 TraesCS2B01G019800 chrUn 86.420 486 42 11 6072 6544 15849730 15850204 1.630000e-140 510.0
45 TraesCS2B01G019800 chrUn 85.336 491 33 17 539 997 15922827 15922344 7.680000e-129 472.0
46 TraesCS2B01G019800 chrUn 80.532 601 94 14 732 1316 381159094 381159687 2.170000e-119 440.0
47 TraesCS2B01G019800 chrUn 90.608 181 13 2 307 487 15922997 15922821 3.050000e-58 237.0
48 TraesCS2B01G019800 chrUn 85.903 227 27 3 5572 5794 15956206 15955981 3.050000e-58 237.0
49 TraesCS2B01G019800 chrUn 87.407 135 7 6 611 745 440099199 440099323 5.290000e-31 147.0
50 TraesCS2B01G019800 chrUn 96.667 60 2 0 1 60 15923198 15923139 4.180000e-17 100.0
51 TraesCS2B01G019800 chr2D 84.377 3098 415 36 1474 4533 2680850 2677784 0.000000e+00 2976.0
52 TraesCS2B01G019800 chr2D 83.962 1060 124 26 4451 5475 2539133 2538085 0.000000e+00 974.0
53 TraesCS2B01G019800 chr2D 91.171 589 40 6 5964 6544 2537763 2537179 0.000000e+00 789.0
54 TraesCS2B01G019800 chr2D 94.000 350 18 3 5616 5965 22566608 22566262 1.620000e-145 527.0
55 TraesCS2B01G019800 chr2D 83.921 454 50 14 6110 6544 2730894 2730445 4.720000e-111 412.0
56 TraesCS2B01G019800 chr2D 94.118 221 8 2 6328 6544 2466778 2466997 1.360000e-86 331.0
57 TraesCS2B01G019800 chr4A 87.271 1092 73 19 5469 6542 207380470 207381513 0.000000e+00 1186.0
58 TraesCS2B01G019800 chr6A 83.161 677 42 14 5878 6542 599240113 599239497 2.670000e-153 553.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G019800 chr2B 9121805 9128348 6543 True 5815.500000 11520 100.000000 1 6544 2 chr2B.!!$R1 6543
1 TraesCS2B01G019800 chr2B 8592546 8594848 2302 False 2287.000000 2287 84.599000 932 3247 1 chr2B.!!$F1 2315
2 TraesCS2B01G019800 chr2B 8994387 8999541 5154 False 2200.333333 4957 88.886333 1092 6382 3 chr2B.!!$F5 5290
3 TraesCS2B01G019800 chr2B 8385262 8390111 4849 False 2091.000000 3627 82.230000 611 5496 2 chr2B.!!$F4 4885
4 TraesCS2B01G019800 chr2A 2881572 2885009 3437 False 3086.000000 3086 83.169000 1548 4937 1 chr2A.!!$F3 3389
5 TraesCS2B01G019800 chr2A 2363348 2366117 2769 False 2710.000000 2710 84.546000 1546 4284 1 chr2A.!!$F2 2738
6 TraesCS2B01G019800 chr2A 2321684 2326778 5094 False 2127.000000 3260 85.145500 1474 6544 2 chr2A.!!$F4 5070
7 TraesCS2B01G019800 chr2A 2489492 2496004 6512 True 1340.800000 6506 93.075833 1 6544 6 chr2A.!!$R1 6543
8 TraesCS2B01G019800 chr2A 2381151 2383485 2334 False 658.000000 1301 90.746250 4177 6544 4 chr2A.!!$F5 2367
9 TraesCS2B01G019800 chrUn 330376274 330378950 2676 True 2673.000000 2673 84.754000 1474 4180 1 chrUn.!!$R2 2706
10 TraesCS2B01G019800 chrUn 330399346 330402022 2676 True 2656.000000 2656 84.644000 1474 4180 1 chrUn.!!$R3 2706
11 TraesCS2B01G019800 chrUn 305054159 305056450 2291 False 2261.000000 2261 84.855000 2467 4722 1 chrUn.!!$F2 2255
12 TraesCS2B01G019800 chrUn 342417455 342419836 2381 False 2139.000000 2139 83.313000 2319 4665 1 chrUn.!!$F4 2346
13 TraesCS2B01G019800 chrUn 15774207 15779055 4848 False 2068.000000 3591 82.082000 611 5496 2 chrUn.!!$F13 4885
14 TraesCS2B01G019800 chrUn 241627993 241632640 4647 False 2030.000000 3511 82.310500 611 5298 2 chrUn.!!$F14 4687
15 TraesCS2B01G019800 chrUn 15549999 15557899 7900 False 1851.000000 3626 82.492000 611 5496 3 chrUn.!!$F12 4885
16 TraesCS2B01G019800 chrUn 334804145 334805666 1521 False 1339.000000 1339 83.104000 4021 5496 1 chrUn.!!$F3 1475
17 TraesCS2B01G019800 chrUn 15913698 15923198 9500 True 1299.000000 4518 89.544800 1 6544 5 chrUn.!!$R4 6543
18 TraesCS2B01G019800 chrUn 364735909 364736874 965 False 1136.000000 1136 87.731000 5525 6544 1 chrUn.!!$F5 1019
19 TraesCS2B01G019800 chrUn 415025125 415026418 1293 False 1099.000000 1099 82.648000 3402 4665 1 chrUn.!!$F8 1263
20 TraesCS2B01G019800 chrUn 418518220 418519122 902 False 1092.000000 1092 88.353000 5599 6544 1 chrUn.!!$F9 945
21 TraesCS2B01G019800 chrUn 424221242 424221948 706 False 545.000000 545 81.181000 611 1316 1 chrUn.!!$F10 705
22 TraesCS2B01G019800 chrUn 410123783 410124493 710 False 544.000000 544 81.096000 611 1316 1 chrUn.!!$F7 705
23 TraesCS2B01G019800 chrUn 381159094 381159687 593 False 440.000000 440 80.532000 732 1316 1 chrUn.!!$F6 584
24 TraesCS2B01G019800 chr2D 2677784 2680850 3066 True 2976.000000 2976 84.377000 1474 4533 1 chr2D.!!$R1 3059
25 TraesCS2B01G019800 chr2D 2537179 2539133 1954 True 881.500000 974 87.566500 4451 6544 2 chr2D.!!$R4 2093
26 TraesCS2B01G019800 chr4A 207380470 207381513 1043 False 1186.000000 1186 87.271000 5469 6542 1 chr4A.!!$F1 1073
27 TraesCS2B01G019800 chr6A 599239497 599240113 616 True 553.000000 553 83.161000 5878 6542 1 chr6A.!!$R1 664

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
902 958 1.466856 TGATTCCTCAATGCAGGTGC 58.533 50.000 0.00 0.00 42.50 5.01 F
1503 4676 0.248289 GTGGATGCATGCCAAAGCTT 59.752 50.000 16.68 0.00 40.80 3.74 F
1844 5020 0.320697 GGTCTTACTGTGCTTCCGGT 59.679 55.000 0.00 0.00 0.00 5.28 F
1845 5021 1.270678 GGTCTTACTGTGCTTCCGGTT 60.271 52.381 0.00 0.00 0.00 4.44 F
2828 6010 1.463674 GTGGTAATTCAGCCACCCAG 58.536 55.000 12.95 0.00 46.91 4.45 F
3994 7206 0.679505 ACAAGAGCTTGAGGTACGCA 59.320 50.000 16.47 0.00 42.93 5.24 F
5010 8428 0.175302 CACTGCAGGAGCTCGAGATT 59.825 55.000 18.75 2.53 42.74 2.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2844 6026 0.723414 CGCCTAAGTCATGTGTGCTG 59.277 55.000 0.00 0.0 0.00 4.41 R
3491 6691 1.068250 GACCGCTCACTATCCCAGC 59.932 63.158 0.00 0.0 0.00 4.85 R
3610 6810 1.001764 CCTCTGCCAGCCATGTTGA 60.002 57.895 0.00 0.0 0.00 3.18 R
3787 6987 2.119801 AGGCCAATGAGTGTAAGCTG 57.880 50.000 5.01 0.0 0.00 4.24 R
4626 8041 0.678048 GGGATCGCAAAGCTTGGAGT 60.678 55.000 4.56 0.0 0.00 3.85 R
5460 9022 0.394938 ACGGTGGAACATACACAGCA 59.605 50.000 0.00 0.0 44.52 4.41 R
6365 11864 0.615331 TCAGTAGCTTGCCCTGAAGG 59.385 55.000 9.25 0.0 32.55 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
419 420 1.598962 GCACAGCAGCAGGTCAGAA 60.599 57.895 0.00 0.00 0.00 3.02
442 444 2.997315 TCCCCTCTCTGTGGCACG 60.997 66.667 13.77 8.10 0.00 5.34
454 456 3.895041 TCTGTGGCACGATAGGATCAATA 59.105 43.478 13.77 0.00 43.77 1.90
457 459 2.301870 TGGCACGATAGGATCAATACCC 59.698 50.000 0.00 0.00 43.77 3.69
493 495 6.514947 ACCACACACAGAAATAAACTACGTA 58.485 36.000 0.00 0.00 0.00 3.57
840 884 4.264487 TGTTATACACACACTCCTCCCCTA 60.264 45.833 0.00 0.00 0.00 3.53
841 885 2.226962 TACACACACTCCTCCCCTAC 57.773 55.000 0.00 0.00 0.00 3.18
902 958 1.466856 TGATTCCTCAATGCAGGTGC 58.533 50.000 0.00 0.00 42.50 5.01
1015 4179 2.614969 AGATGGCTTGCTGGGGGA 60.615 61.111 0.00 0.00 0.00 4.81
1072 4236 1.203364 AGGACCTCAGGATGGAACTGT 60.203 52.381 0.00 0.00 37.25 3.55
1290 4454 2.496341 CTCGCCCTCAATGCTCGA 59.504 61.111 0.00 0.00 0.00 4.04
1322 4486 0.386838 GCTCTTGCCAAACAGCTGTT 59.613 50.000 26.36 26.36 40.50 3.16
1414 4578 2.027460 GTTGTTGTGCTTGGCCGG 59.973 61.111 0.00 0.00 0.00 6.13
1503 4676 0.248289 GTGGATGCATGCCAAAGCTT 59.752 50.000 16.68 0.00 40.80 3.74
1632 4808 1.704628 TCTCAAAGGATGAAGGGCACA 59.295 47.619 0.00 0.00 37.67 4.57
1830 5006 4.019591 GGTCAATACTGTACCAAGGGTCTT 60.020 45.833 0.00 0.00 37.09 3.01
1843 5019 0.391263 GGGTCTTACTGTGCTTCCGG 60.391 60.000 0.00 0.00 0.00 5.14
1844 5020 0.320697 GGTCTTACTGTGCTTCCGGT 59.679 55.000 0.00 0.00 0.00 5.28
1845 5021 1.270678 GGTCTTACTGTGCTTCCGGTT 60.271 52.381 0.00 0.00 0.00 4.44
2033 5209 3.074538 AGTGAAAAGGAGGGCAGTACAAT 59.925 43.478 0.00 0.00 0.00 2.71
2343 5519 3.096852 TCTGCTTGAGACCGGAGATAAA 58.903 45.455 9.46 0.00 0.00 1.40
2397 5573 3.438087 CAGCAAGGACTGTTGGTAGATTG 59.562 47.826 0.00 0.00 35.99 2.67
2400 5576 4.832248 CAAGGACTGTTGGTAGATTGCTA 58.168 43.478 0.00 0.00 0.00 3.49
2700 5882 9.927668 GTCAATTATGGATTTTTCAAGGAAGAA 57.072 29.630 0.00 0.00 0.00 2.52
2755 5937 5.172687 TGACCTACTACATGATTTGGCAA 57.827 39.130 0.00 0.00 0.00 4.52
2784 5966 1.850441 GCATCGCATGATTGTCTTTGC 59.150 47.619 0.00 0.00 30.49 3.68
2828 6010 1.463674 GTGGTAATTCAGCCACCCAG 58.536 55.000 12.95 0.00 46.91 4.45
2844 6026 2.171448 ACCCAGCCATCACTTGTCTATC 59.829 50.000 0.00 0.00 0.00 2.08
2968 6150 8.855110 ACACATTGATGTTATTTGGTAAAGTGA 58.145 29.630 0.00 0.00 39.39 3.41
2982 6164 5.127845 TGGTAAAGTGAATGGAAGTTTTGCA 59.872 36.000 0.00 0.00 34.77 4.08
3057 6239 4.795469 TGCTTGACATGATGTATCCCATT 58.205 39.130 0.00 0.00 32.56 3.16
3459 6659 2.626743 AGCAGCTCAAGCAAAACTGATT 59.373 40.909 4.59 0.00 45.16 2.57
3571 6771 4.197750 CCTTCAACCTCATGGAGATCTTG 58.802 47.826 0.00 0.00 37.04 3.02
3591 6791 7.297936 TCTTGAAGTGTTGTGTATTAGAGGA 57.702 36.000 0.00 0.00 0.00 3.71
3610 6810 3.913163 AGGACATGGAGGTCTTTCTTCTT 59.087 43.478 0.00 0.00 37.91 2.52
3994 7206 0.679505 ACAAGAGCTTGAGGTACGCA 59.320 50.000 16.47 0.00 42.93 5.24
4015 7227 1.004745 ACTGTCCCGAATTCTTGCCAT 59.995 47.619 3.52 0.00 0.00 4.40
4103 7315 7.118723 AGGGAGTTTGCATACTCAAAATCATA 58.881 34.615 30.26 0.00 46.63 2.15
4137 7349 5.595952 ACAATTGAAGATTATTGGAGAGGCC 59.404 40.000 13.59 0.00 36.34 5.19
4269 7496 8.420222 ACATTGATTGTACAAAATTCAGTTGGA 58.580 29.630 13.23 0.00 36.57 3.53
4285 7512 3.577415 AGTTGGACTAGTTGGACCACTAC 59.423 47.826 0.00 0.00 31.87 2.73
4307 7534 1.078143 GAGGTCAGGGTGATGTGGC 60.078 63.158 0.00 0.00 0.00 5.01
4327 7554 2.045536 GGCAGCTCCCTGTTGAGG 60.046 66.667 0.00 0.00 41.26 3.86
4333 7560 2.971330 CAGCTCCCTGTTGAGGATATCT 59.029 50.000 2.05 0.00 42.93 1.98
4335 7562 3.116784 AGCTCCCTGTTGAGGATATCTCT 60.117 47.826 2.05 0.00 42.93 3.10
4338 7565 5.105392 GCTCCCTGTTGAGGATATCTCTATG 60.105 48.000 2.05 0.00 42.93 2.23
4339 7566 4.774726 TCCCTGTTGAGGATATCTCTATGC 59.225 45.833 2.05 0.00 42.93 3.14
4362 7735 7.398829 TGCAGAACTTAAATGGTAATAGTGGA 58.601 34.615 0.00 0.00 0.00 4.02
4458 7831 2.967946 GCTGGTAGTGGGGGTGGAC 61.968 68.421 0.00 0.00 0.00 4.02
4521 7912 4.216257 GGTGAAATAACAGCAGCAGAAGAA 59.784 41.667 0.00 0.00 38.05 2.52
4560 7951 1.209990 CTGCTCTTCCCAGCTCATCTT 59.790 52.381 0.00 0.00 40.39 2.40
4587 7978 3.262420 CTCACTACGGGAATTGGAGTTG 58.738 50.000 0.00 0.00 0.00 3.16
4591 7982 2.474410 ACGGGAATTGGAGTTGAGTC 57.526 50.000 0.00 0.00 0.00 3.36
4650 8065 0.257039 AAGCTTTGCGATCCCTCCAT 59.743 50.000 0.00 0.00 0.00 3.41
4706 8124 1.057851 ACCTCCTTTTCCCGTCACCA 61.058 55.000 0.00 0.00 0.00 4.17
4722 8140 3.265995 GTCACCATTTTCCTTCCTCCCTA 59.734 47.826 0.00 0.00 0.00 3.53
4760 8178 1.307647 GTGTGGAAGGCATGGGGAT 59.692 57.895 0.00 0.00 0.00 3.85
4782 8200 1.301293 GGAGCCCCTCTCAAACCTG 59.699 63.158 0.00 0.00 43.70 4.00
4809 8227 7.619698 TCCTCTCTCACCAGATTAGTATTGAAA 59.380 37.037 0.00 0.00 0.00 2.69
4968 8386 0.979665 CTGAGGGAGGTGAAGAGCAA 59.020 55.000 0.00 0.00 0.00 3.91
4977 8395 2.092968 AGGTGAAGAGCAACAGACACAA 60.093 45.455 0.00 0.00 36.36 3.33
4998 8416 1.003545 CTTGTTTCGTCCACACTGCAG 60.004 52.381 13.48 13.48 0.00 4.41
5009 8427 0.969917 ACACTGCAGGAGCTCGAGAT 60.970 55.000 18.75 10.84 42.74 2.75
5010 8428 0.175302 CACTGCAGGAGCTCGAGATT 59.825 55.000 18.75 2.53 42.74 2.40
5019 8437 3.005684 AGGAGCTCGAGATTGATGACATC 59.994 47.826 18.75 8.59 0.00 3.06
5020 8438 3.005684 GGAGCTCGAGATTGATGACATCT 59.994 47.826 18.75 0.00 0.00 2.90
5021 8439 4.501229 GGAGCTCGAGATTGATGACATCTT 60.501 45.833 18.75 4.27 0.00 2.40
5022 8440 4.370049 AGCTCGAGATTGATGACATCTTG 58.630 43.478 18.75 1.21 0.00 3.02
5028 8446 5.221322 CGAGATTGATGACATCTTGGGACTA 60.221 44.000 16.25 0.00 0.00 2.59
5032 8450 6.867519 TTGATGACATCTTGGGACTACTTA 57.132 37.500 16.25 0.00 0.00 2.24
5092 8510 1.064166 AGCTGGAACTTCATGGGGATG 60.064 52.381 0.00 0.00 0.00 3.51
5095 8513 0.756815 GGAACTTCATGGGGATGGGC 60.757 60.000 0.00 0.00 0.00 5.36
5096 8514 0.756815 GAACTTCATGGGGATGGGCC 60.757 60.000 0.00 0.00 0.00 5.80
5112 8530 2.203126 CCTGAAGGGATGGAGCGC 60.203 66.667 0.00 0.00 37.23 5.92
5142 8560 1.743252 GCAAGAGGACGCCCTTCAG 60.743 63.158 0.00 0.00 44.53 3.02
5161 8579 1.457455 CTCCTCTCCTCCCTCCAGC 60.457 68.421 0.00 0.00 0.00 4.85
5166 8584 0.616111 TCTCCTCCCTCCAGCAACTC 60.616 60.000 0.00 0.00 0.00 3.01
5183 8601 4.548726 GCAACTCGTGTTTTGCAATTTCAG 60.549 41.667 0.00 0.00 46.13 3.02
5207 8625 1.477558 CCTTCAACAACTCCCTGCAGT 60.478 52.381 13.81 0.00 0.00 4.40
5241 8659 6.954102 ACCTTACCAGCCTCAAGAAATTATTT 59.046 34.615 0.00 0.00 0.00 1.40
5257 8675 1.846007 ATTTATCAACGGCTGCCCAA 58.154 45.000 14.12 0.00 0.00 4.12
5259 8677 0.250945 TTATCAACGGCTGCCCAACA 60.251 50.000 14.12 0.00 0.00 3.33
5308 8726 3.433314 CCCTGAATCACTGCAAGAGCTAT 60.433 47.826 0.00 0.00 42.74 2.97
5322 8740 5.346281 GCAAGAGCTATATGTCGGATACAAC 59.654 44.000 0.00 0.00 38.70 3.32
5329 8747 0.391130 TGTCGGATACAACTGCAGCC 60.391 55.000 15.27 4.52 34.29 4.85
5359 8780 3.177884 AGCAGTGCAGGGGGTTGA 61.178 61.111 19.20 0.00 0.00 3.18
5365 8786 2.356667 GCAGGGGGTTGAAGGGAG 59.643 66.667 0.00 0.00 0.00 4.30
5383 8804 3.690460 GGAGCCATCCCCAAAGTATATG 58.310 50.000 0.00 0.00 40.03 1.78
5384 8805 3.084786 GAGCCATCCCCAAAGTATATGC 58.915 50.000 0.00 0.00 0.00 3.14
5385 8806 2.718609 AGCCATCCCCAAAGTATATGCT 59.281 45.455 0.00 0.00 0.00 3.79
5388 8809 4.812096 GCCATCCCCAAAGTATATGCTGAT 60.812 45.833 0.00 0.00 0.00 2.90
5392 8819 3.753272 CCCCAAAGTATATGCTGATTCCG 59.247 47.826 0.00 0.00 0.00 4.30
5402 8829 1.621317 TGCTGATTCCGAGGTAACACA 59.379 47.619 0.00 0.00 41.41 3.72
5406 8833 4.023536 GCTGATTCCGAGGTAACACAAAAA 60.024 41.667 0.00 0.00 41.41 1.94
5451 8880 0.820226 GCCCTTTTCCTGCATTCCTC 59.180 55.000 0.00 0.00 0.00 3.71
5458 9020 5.163478 CCTTTTCCTGCATTCCTCCTTAATG 60.163 44.000 0.00 0.00 37.39 1.90
5460 9022 5.393068 TTCCTGCATTCCTCCTTAATGAT 57.607 39.130 0.00 0.00 36.61 2.45
5461 9023 4.722220 TCCTGCATTCCTCCTTAATGATG 58.278 43.478 0.00 0.00 36.61 3.07
5468 9030 5.692115 TTCCTCCTTAATGATGCTGTGTA 57.308 39.130 0.00 0.00 0.00 2.90
5486 9053 0.908910 TATGTTCCACCGTGCAGGAT 59.091 50.000 8.24 0.00 45.00 3.24
5491 9058 1.199615 TCCACCGTGCAGGATAATGA 58.800 50.000 8.24 0.00 45.00 2.57
5506 9073 5.488919 AGGATAATGACTTGGAGTTCCTTCA 59.511 40.000 0.00 0.71 36.82 3.02
5508 9075 6.261826 GGATAATGACTTGGAGTTCCTTCATG 59.738 42.308 9.69 0.00 33.77 3.07
5513 9080 3.327757 ACTTGGAGTTCCTTCATGCAGTA 59.672 43.478 0.00 0.00 36.82 2.74
5517 9084 4.530553 TGGAGTTCCTTCATGCAGTACTTA 59.469 41.667 0.00 0.00 36.82 2.24
5519 9086 5.938125 GGAGTTCCTTCATGCAGTACTTAAA 59.062 40.000 0.00 0.00 0.00 1.52
5523 9151 7.885399 AGTTCCTTCATGCAGTACTTAAATCTT 59.115 33.333 0.00 0.00 0.00 2.40
5533 9163 7.719633 TGCAGTACTTAAATCTTGTCTTCCTTT 59.280 33.333 0.00 0.00 0.00 3.11
5639 10739 1.341383 GGCCCTGATCTTTCACCACAT 60.341 52.381 0.00 0.00 0.00 3.21
5690 10832 7.962964 TTTTGTGGAGAAGTGTATGAACTAG 57.037 36.000 0.00 0.00 0.00 2.57
5691 10833 5.661056 TGTGGAGAAGTGTATGAACTAGG 57.339 43.478 0.00 0.00 0.00 3.02
5692 10834 5.084519 TGTGGAGAAGTGTATGAACTAGGT 58.915 41.667 0.00 0.00 0.00 3.08
5824 10993 4.083565 GGTGCACCCAAAATACCTTTCTA 58.916 43.478 26.31 0.00 0.00 2.10
6051 11478 6.490381 AGTCTTACTCGTGCCATATCAGATTA 59.510 38.462 0.00 0.00 0.00 1.75
6057 11484 5.620206 TCGTGCCATATCAGATTACCATTT 58.380 37.500 0.00 0.00 0.00 2.32
6058 11485 6.061441 TCGTGCCATATCAGATTACCATTTT 58.939 36.000 0.00 0.00 0.00 1.82
6107 11561 2.969443 AGATTTGTTTCTCAACGCCG 57.031 45.000 0.00 0.00 35.40 6.46
6237 11725 1.601903 GTGCAGGTGTTTGTTCGATCA 59.398 47.619 0.00 0.00 0.00 2.92
6265 11753 9.750783 ATAGGCTTCTTCATATCTTGCATTTAT 57.249 29.630 0.00 0.00 0.00 1.40
6365 11864 6.939163 AGGACATCAGTATGGAATAAATGAGC 59.061 38.462 0.00 0.00 37.43 4.26
6370 11869 6.899089 TCAGTATGGAATAAATGAGCCTTCA 58.101 36.000 0.00 0.00 35.29 3.02
6373 11872 3.902218 TGGAATAAATGAGCCTTCAGGG 58.098 45.455 0.00 0.00 36.61 4.45
6501 12475 4.202202 TGTTCTTATGTTTGGTGGGCTTTG 60.202 41.667 0.00 0.00 0.00 2.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 3.264866 GACCCGAGTTGCGTCGACT 62.265 63.158 14.70 0.00 42.85 4.18
366 367 2.903855 CTGCCGGTGATGGATGCC 60.904 66.667 1.90 0.00 0.00 4.40
400 401 2.281276 CTGACCTGCTGCTGTGCA 60.281 61.111 0.00 0.07 41.05 4.57
419 420 2.876858 ACAGAGAGGGGAGGGGGT 60.877 66.667 0.00 0.00 0.00 4.95
442 444 5.221661 ACCAAACTCGGGTATTGATCCTATC 60.222 44.000 10.66 0.00 36.72 2.08
454 456 1.916738 TGGTCAACCAAACTCGGGT 59.083 52.632 0.00 0.00 44.35 5.28
541 543 6.966632 TGCATAAACAGAGCATAATCGTTTTC 59.033 34.615 0.00 0.00 32.55 2.29
544 546 6.038603 ACATGCATAAACAGAGCATAATCGTT 59.961 34.615 0.00 0.00 46.39 3.85
553 555 3.429410 GGGGAAACATGCATAAACAGAGC 60.429 47.826 0.00 0.00 0.00 4.09
557 559 3.505386 AGTGGGGAAACATGCATAAACA 58.495 40.909 0.00 0.00 0.00 2.83
642 644 8.729756 CCAATCACAAGACAAGTATAAATGTGA 58.270 33.333 7.98 7.98 46.52 3.58
643 645 8.729756 TCCAATCACAAGACAAGTATAAATGTG 58.270 33.333 0.00 0.00 38.36 3.21
644 646 8.862325 TCCAATCACAAGACAAGTATAAATGT 57.138 30.769 0.00 0.00 0.00 2.71
753 771 3.726144 GCTGCCTTCCCTCTGCCT 61.726 66.667 0.00 0.00 0.00 4.75
758 776 4.496336 ATGCCGCTGCCTTCCCTC 62.496 66.667 0.00 0.00 36.33 4.30
759 777 4.496336 GATGCCGCTGCCTTCCCT 62.496 66.667 0.00 0.00 36.33 4.20
790 808 3.807538 GCACGTGGATGCTGCCTG 61.808 66.667 18.88 0.00 42.62 4.85
794 812 2.562912 GTTGGCACGTGGATGCTG 59.437 61.111 18.88 0.00 45.38 4.41
805 849 2.985809 GTGTATAACACGTACGTTGGCA 59.014 45.455 20.23 9.21 39.53 4.92
819 863 3.484953 AGGGGAGGAGTGTGTGTATAA 57.515 47.619 0.00 0.00 0.00 0.98
902 958 1.676746 CAGGGATGAAGGATGTGCAG 58.323 55.000 0.00 0.00 0.00 4.41
911 971 2.202932 CCGGACGCAGGGATGAAG 60.203 66.667 0.00 0.00 0.00 3.02
1072 4236 2.664851 CGTGGCCTTGACGAGCAA 60.665 61.111 8.34 0.00 39.21 3.91
1116 4280 3.460672 CTCCATGGCCGTACCGCAT 62.461 63.158 6.96 0.00 43.94 4.73
1264 4428 1.841302 TTGAGGGCGAGGTTGCAGAT 61.841 55.000 0.00 0.00 36.28 2.90
1290 4454 1.152963 AAGAGCTTTGGCGGTGTGT 60.153 52.632 0.00 0.00 44.37 3.72
1322 4486 0.101759 GCAGTACGCGGACAAGGATA 59.898 55.000 25.94 0.00 0.00 2.59
1414 4578 1.219393 GTAGTCTCTGCCTGCCACC 59.781 63.158 0.00 0.00 0.00 4.61
1503 4676 3.786553 TGAGCAAGGGAGGAGTTTACTA 58.213 45.455 0.00 0.00 0.00 1.82
1632 4808 4.806247 CGCATAAGCTTTAGTTGCTCTACT 59.194 41.667 3.20 0.00 40.22 2.57
1830 5006 1.134340 ACAACAACCGGAAGCACAGTA 60.134 47.619 9.46 0.00 0.00 2.74
1843 5019 1.112916 CCCCCAGGACCAACAACAAC 61.113 60.000 0.00 0.00 33.47 3.32
1844 5020 1.231641 CCCCCAGGACCAACAACAA 59.768 57.895 0.00 0.00 33.47 2.83
1845 5021 1.289982 TTCCCCCAGGACCAACAACA 61.290 55.000 0.00 0.00 43.90 3.33
2033 5209 9.123902 TCAATCTTTCTTCAATCAACTCTTCAA 57.876 29.630 0.00 0.00 0.00 2.69
2343 5519 6.156256 GGGAGCCCTTTAGTTTTTCCATTATT 59.844 38.462 0.00 0.00 0.00 1.40
2693 5875 3.395941 ACCACCATCAGTTTCTTCTTCCT 59.604 43.478 0.00 0.00 0.00 3.36
2700 5882 1.609061 CGCTGACCACCATCAGTTTCT 60.609 52.381 4.80 0.00 46.65 2.52
2755 5937 1.753930 TCATGCGATGCAACCTTCAT 58.246 45.000 0.00 0.00 43.62 2.57
2784 5966 6.830912 TGATCCAACATTAGGGAGACATAAG 58.169 40.000 0.00 0.00 40.32 1.73
2828 6010 2.611292 GTGCTGATAGACAAGTGATGGC 59.389 50.000 0.00 0.00 37.30 4.40
2844 6026 0.723414 CGCCTAAGTCATGTGTGCTG 59.277 55.000 0.00 0.00 0.00 4.41
2968 6150 7.938490 ACCAAATATCTTTGCAAAACTTCCATT 59.062 29.630 13.84 4.66 40.39 3.16
2982 6164 7.396055 TCCCGAAGAAAATCACCAAATATCTTT 59.604 33.333 0.00 0.00 0.00 2.52
3057 6239 8.684386 TTGAAAAGTTATGTAACATGGACTCA 57.316 30.769 0.00 0.00 38.62 3.41
3491 6691 1.068250 GACCGCTCACTATCCCAGC 59.932 63.158 0.00 0.00 0.00 4.85
3571 6771 6.313905 CCATGTCCTCTAATACACAACACTTC 59.686 42.308 0.00 0.00 0.00 3.01
3591 6791 4.982241 TGAAGAAGAAAGACCTCCATGT 57.018 40.909 0.00 0.00 0.00 3.21
3610 6810 1.001764 CCTCTGCCAGCCATGTTGA 60.002 57.895 0.00 0.00 0.00 3.18
3787 6987 2.119801 AGGCCAATGAGTGTAAGCTG 57.880 50.000 5.01 0.00 0.00 4.24
3994 7206 1.202879 TGGCAAGAATTCGGGACAGTT 60.203 47.619 4.09 0.00 0.00 3.16
4137 7349 4.512944 ACTTGGTCTATGCTATGCAAATCG 59.487 41.667 0.00 0.00 43.62 3.34
4190 7417 2.930019 CCAGAGGTGGGCACTCCA 60.930 66.667 10.23 0.00 44.79 3.86
4192 7419 1.484444 AACTCCAGAGGTGGGCACTC 61.484 60.000 0.00 0.00 45.11 3.51
4269 7496 3.757493 CTCTTCGTAGTGGTCCAACTAGT 59.243 47.826 0.00 0.00 33.35 2.57
4285 7512 0.898320 ACATCACCCTGACCTCTTCG 59.102 55.000 0.00 0.00 0.00 3.79
4327 7554 9.717942 ACCATTTAAGTTCTGCATAGAGATATC 57.282 33.333 0.00 0.00 33.70 1.63
4335 7562 9.337396 CCACTATTACCATTTAAGTTCTGCATA 57.663 33.333 0.00 0.00 0.00 3.14
4338 7565 7.769044 TCTCCACTATTACCATTTAAGTTCTGC 59.231 37.037 0.00 0.00 0.00 4.26
4339 7566 9.319143 CTCTCCACTATTACCATTTAAGTTCTG 57.681 37.037 0.00 0.00 0.00 3.02
4362 7735 1.555967 GGAGCTCTGTCAGTTCCTCT 58.444 55.000 14.64 0.00 46.73 3.69
4458 7831 2.590073 TCTTGTGTTGTTTGTTGCACG 58.410 42.857 0.00 0.00 34.86 5.34
4521 7912 0.842635 GCACCCCATCATCCTCTTCT 59.157 55.000 0.00 0.00 0.00 2.85
4560 7951 3.556213 CCAATTCCCGTAGTGAGTCACAA 60.556 47.826 24.73 9.73 36.74 3.33
4587 7978 1.342819 AGAGTTGGTGAGCAGTGACTC 59.657 52.381 6.81 6.81 37.19 3.36
4591 7982 1.959042 ACAAGAGTTGGTGAGCAGTG 58.041 50.000 0.00 0.00 34.12 3.66
4626 8041 0.678048 GGGATCGCAAAGCTTGGAGT 60.678 55.000 4.56 0.00 0.00 3.85
4650 8065 5.280654 GGGACCACCGTATTGTTAATCTA 57.719 43.478 0.00 0.00 36.97 1.98
4706 8124 4.018324 GGAACTGTAGGGAGGAAGGAAAAT 60.018 45.833 0.00 0.00 0.00 1.82
4760 8178 1.276622 GTTTGAGAGGGGCTCCAGTA 58.723 55.000 4.79 0.00 43.26 2.74
4782 8200 6.547880 TCAATACTAATCTGGTGAGAGAGGAC 59.452 42.308 0.00 0.00 0.00 3.85
4809 8227 4.916041 TTTCAGATCCTCTCCACAATGT 57.084 40.909 0.00 0.00 0.00 2.71
4943 8361 1.274703 TTCACCTCCCTCAGCATCCC 61.275 60.000 0.00 0.00 0.00 3.85
4968 8386 2.676342 GGACGAAACAAGTTGTGTCTGT 59.324 45.455 21.23 19.34 40.60 3.41
4977 8395 1.014352 GCAGTGTGGACGAAACAAGT 58.986 50.000 0.00 0.00 0.00 3.16
4998 8416 2.879002 TGTCATCAATCTCGAGCTCC 57.121 50.000 7.81 0.00 0.00 4.70
5009 8427 5.762179 AAGTAGTCCCAAGATGTCATCAA 57.238 39.130 15.20 0.00 0.00 2.57
5010 8428 5.958380 AGTAAGTAGTCCCAAGATGTCATCA 59.042 40.000 15.20 0.00 0.00 3.07
5019 8437 2.354805 GGGTGCAGTAAGTAGTCCCAAG 60.355 54.545 0.00 0.00 34.20 3.61
5020 8438 1.626825 GGGTGCAGTAAGTAGTCCCAA 59.373 52.381 0.00 0.00 34.20 4.12
5021 8439 1.272807 GGGTGCAGTAAGTAGTCCCA 58.727 55.000 0.00 0.00 34.20 4.37
5022 8440 1.272807 TGGGTGCAGTAAGTAGTCCC 58.727 55.000 0.00 0.00 0.00 4.46
5028 8446 3.558674 GCAGATGGGTGCAGTAAGT 57.441 52.632 0.00 0.00 43.41 2.24
5049 8467 2.107366 GTGAGGGAGGAAGAGAGGAAG 58.893 57.143 0.00 0.00 0.00 3.46
5092 8510 2.922234 CTCCATCCCTTCAGGCCC 59.078 66.667 0.00 0.00 34.51 5.80
5095 8513 2.203126 GCGCTCCATCCCTTCAGG 60.203 66.667 0.00 0.00 0.00 3.86
5096 8514 0.813210 GAAGCGCTCCATCCCTTCAG 60.813 60.000 12.06 0.00 35.10 3.02
5112 8530 1.002888 TCCTCTTGCTCCTTGCTGAAG 59.997 52.381 0.00 0.00 43.37 3.02
5142 8560 1.457455 CTGGAGGGAGGAGAGGAGC 60.457 68.421 0.00 0.00 0.00 4.70
5161 8579 4.026640 CCTGAAATTGCAAAACACGAGTTG 60.027 41.667 1.71 0.00 38.17 3.16
5166 8584 2.794350 GTCCCTGAAATTGCAAAACACG 59.206 45.455 1.71 0.00 0.00 4.49
5175 8593 4.342092 AGTTGTTGAAGGTCCCTGAAATTG 59.658 41.667 0.00 0.00 0.00 2.32
5183 8601 0.771755 AGGGAGTTGTTGAAGGTCCC 59.228 55.000 0.00 0.00 46.51 4.46
5207 8625 0.672401 GCTGGTAAGGTTACGCAGCA 60.672 55.000 23.93 7.15 46.03 4.41
5241 8659 0.676466 CTGTTGGGCAGCCGTTGATA 60.676 55.000 5.00 0.00 38.52 2.15
5257 8675 2.023414 TTGGGCAACGACGAGACTGT 62.023 55.000 0.00 0.00 37.60 3.55
5259 8677 1.300697 GTTGGGCAACGACGAGACT 60.301 57.895 0.00 0.00 37.60 3.24
5260 8678 3.241177 GTTGGGCAACGACGAGAC 58.759 61.111 0.00 0.00 37.60 3.36
5308 8726 2.483013 GGCTGCAGTTGTATCCGACATA 60.483 50.000 16.64 0.00 38.07 2.29
5365 8786 2.821969 CAGCATATACTTTGGGGATGGC 59.178 50.000 0.00 0.00 0.00 4.40
5379 8800 4.100963 TGTGTTACCTCGGAATCAGCATAT 59.899 41.667 0.00 0.00 0.00 1.78
5383 8804 2.380084 TGTGTTACCTCGGAATCAGC 57.620 50.000 0.00 0.00 0.00 4.26
5384 8805 5.682943 TTTTTGTGTTACCTCGGAATCAG 57.317 39.130 0.00 0.00 0.00 2.90
5406 8833 6.445357 AGTGGAAAAACACAAGAACGTATT 57.555 33.333 0.00 0.00 43.72 1.89
5411 8839 4.092821 GGCAAAGTGGAAAAACACAAGAAC 59.907 41.667 0.00 0.00 43.72 3.01
5451 8880 5.589855 TGGAACATACACAGCATCATTAAGG 59.410 40.000 0.00 0.00 0.00 2.69
5458 9020 1.665679 CGGTGGAACATACACAGCATC 59.334 52.381 0.00 0.00 44.52 3.91
5460 9022 0.394938 ACGGTGGAACATACACAGCA 59.605 50.000 0.00 0.00 44.52 4.41
5461 9023 0.796312 CACGGTGGAACATACACAGC 59.204 55.000 0.00 0.00 44.52 4.40
5468 9030 0.908910 TATCCTGCACGGTGGAACAT 59.091 50.000 10.60 4.42 44.52 2.71
5486 9053 4.943705 GCATGAAGGAACTCCAAGTCATTA 59.056 41.667 0.00 0.00 38.49 1.90
5491 9058 2.107204 ACTGCATGAAGGAACTCCAAGT 59.893 45.455 5.47 0.00 38.49 3.16
5506 9073 7.398024 AGGAAGACAAGATTTAAGTACTGCAT 58.602 34.615 0.00 0.00 0.00 3.96
5508 9075 7.674471 AAGGAAGACAAGATTTAAGTACTGC 57.326 36.000 0.00 0.00 0.00 4.40
5513 9080 9.274206 GTACAGAAAGGAAGACAAGATTTAAGT 57.726 33.333 0.00 0.00 0.00 2.24
5517 9084 9.847224 TTAAGTACAGAAAGGAAGACAAGATTT 57.153 29.630 0.00 0.00 0.00 2.17
5523 9151 7.878127 CCAGATTTAAGTACAGAAAGGAAGACA 59.122 37.037 0.00 0.00 0.00 3.41
5639 10739 9.875708 AATCCCCAAATATTGCTGTTATTAGTA 57.124 29.630 0.00 0.00 0.00 1.82
5675 10817 7.152645 TCAACTTCACCTAGTTCATACACTTC 58.847 38.462 0.00 0.00 36.24 3.01
5676 10818 7.062749 TCAACTTCACCTAGTTCATACACTT 57.937 36.000 0.00 0.00 36.24 3.16
5677 10819 6.665992 TCAACTTCACCTAGTTCATACACT 57.334 37.500 0.00 0.00 36.24 3.55
5678 10820 7.324178 AGATCAACTTCACCTAGTTCATACAC 58.676 38.462 0.00 0.00 36.24 2.90
5679 10821 7.482169 AGATCAACTTCACCTAGTTCATACA 57.518 36.000 0.00 0.00 36.24 2.29
5680 10822 9.685828 GATAGATCAACTTCACCTAGTTCATAC 57.314 37.037 0.00 0.00 36.24 2.39
5681 10823 9.647918 AGATAGATCAACTTCACCTAGTTCATA 57.352 33.333 0.00 0.00 36.24 2.15
5682 10824 8.546083 AGATAGATCAACTTCACCTAGTTCAT 57.454 34.615 0.00 0.00 36.24 2.57
5683 10825 7.962995 AGATAGATCAACTTCACCTAGTTCA 57.037 36.000 0.00 0.00 36.24 3.18
5684 10826 8.079809 GCTAGATAGATCAACTTCACCTAGTTC 58.920 40.741 0.00 0.00 36.24 3.01
5685 10827 7.561722 TGCTAGATAGATCAACTTCACCTAGTT 59.438 37.037 0.00 0.00 38.87 2.24
5686 10828 7.063593 TGCTAGATAGATCAACTTCACCTAGT 58.936 38.462 0.00 0.00 0.00 2.57
5687 10829 7.517614 TGCTAGATAGATCAACTTCACCTAG 57.482 40.000 0.00 0.00 0.00 3.02
5688 10830 7.201920 GGTTGCTAGATAGATCAACTTCACCTA 60.202 40.741 0.00 0.00 38.90 3.08
5689 10831 6.407525 GGTTGCTAGATAGATCAACTTCACCT 60.408 42.308 0.00 0.00 38.90 4.00
5690 10832 5.755861 GGTTGCTAGATAGATCAACTTCACC 59.244 44.000 0.00 0.00 38.90 4.02
5691 10833 6.341316 TGGTTGCTAGATAGATCAACTTCAC 58.659 40.000 0.00 0.00 38.90 3.18
5692 10834 6.381133 TCTGGTTGCTAGATAGATCAACTTCA 59.619 38.462 0.00 0.00 38.90 3.02
6027 11454 4.569761 TCTGATATGGCACGAGTAAGAC 57.430 45.455 0.00 0.00 0.00 3.01
6036 11463 9.846248 GAATAAAATGGTAATCTGATATGGCAC 57.154 33.333 0.00 0.00 0.00 5.01
6051 11478 9.014297 CACTACCTTTGAGAAGAATAAAATGGT 57.986 33.333 0.00 0.00 34.71 3.55
6107 11561 7.867445 TTTATCGATTTGTGGAAAGAAAAGC 57.133 32.000 1.71 0.00 0.00 3.51
6237 11725 9.750783 AAATGCAAGATATGAAGAAGCCTATAT 57.249 29.630 0.00 0.00 0.00 0.86
6365 11864 0.615331 TCAGTAGCTTGCCCTGAAGG 59.385 55.000 9.25 0.00 32.55 3.46
6370 11869 4.660771 ACCTTAATATCAGTAGCTTGCCCT 59.339 41.667 0.00 0.00 0.00 5.19
6373 11872 7.736447 AATCACCTTAATATCAGTAGCTTGC 57.264 36.000 0.00 0.00 0.00 4.01
6501 12475 5.810074 ACAAAATGTAAACACAAGTGGCTTC 59.190 36.000 5.08 0.00 34.19 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.