Multiple sequence alignment - TraesCS2B01G019700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G019700 chr2B 100.000 3429 0 0 1 3429 9120528 9117100 0.000000e+00 6333.0
1 TraesCS2B01G019700 chr2B 85.057 87 10 3 38 123 9102280 9102196 6.100000e-13 86.1
2 TraesCS2B01G019700 chr2A 97.887 3076 54 5 355 3429 735406818 735409883 0.000000e+00 5310.0
3 TraesCS2B01G019700 chr2A 97.050 2712 53 3 718 3429 759033944 759036628 0.000000e+00 4540.0
4 TraesCS2B01G019700 chr2A 97.711 2141 40 3 1289 3429 716472121 716469990 0.000000e+00 3674.0
5 TraesCS2B01G019700 chr2A 98.291 936 16 0 357 1292 716477346 716476411 0.000000e+00 1640.0
6 TraesCS2B01G019700 chr2A 95.423 284 13 0 354 637 759033662 759033945 1.450000e-123 453.0
7 TraesCS2B01G019700 chr2A 92.222 90 7 0 115 204 30462999 30462910 9.990000e-26 128.0
8 TraesCS2B01G019700 chr3B 97.073 3075 69 5 355 3429 771430518 771427465 0.000000e+00 5160.0
9 TraesCS2B01G019700 chr3B 94.253 87 5 0 118 204 817662876 817662962 2.150000e-27 134.0
10 TraesCS2B01G019700 chr3B 88.679 106 10 2 99 204 652296365 652296468 9.990000e-26 128.0
11 TraesCS2B01G019700 chr4D 90.883 3115 227 27 355 3428 399431818 399428720 0.000000e+00 4126.0
12 TraesCS2B01G019700 chr1A 90.438 3127 228 40 355 3428 489164125 489161017 0.000000e+00 4052.0
13 TraesCS2B01G019700 chr1A 86.777 363 46 2 355 717 24356271 24356631 1.480000e-108 403.0
14 TraesCS2B01G019700 chr1A 86.777 363 46 2 355 717 24380722 24381082 1.480000e-108 403.0
15 TraesCS2B01G019700 chr6A 90.176 3125 237 37 355 3428 587883381 587880276 0.000000e+00 4006.0
16 TraesCS2B01G019700 chr7A 89.888 3125 239 37 355 3428 56101979 56105077 0.000000e+00 3949.0
17 TraesCS2B01G019700 chr5B 89.698 3116 257 32 355 3428 594224484 594221391 0.000000e+00 3917.0
18 TraesCS2B01G019700 chr6B 92.613 2572 170 11 868 3428 711728633 711731195 0.000000e+00 3679.0
19 TraesCS2B01G019700 chr4A 93.548 93 6 0 119 211 739047137 739047229 4.610000e-29 139.0
20 TraesCS2B01G019700 chr4A 93.333 90 6 0 117 206 16245945 16246034 2.150000e-27 134.0
21 TraesCS2B01G019700 chr1D 93.333 90 5 1 120 208 299272402 299272313 7.720000e-27 132.0
22 TraesCS2B01G019700 chr5D 93.103 87 6 0 120 206 346643070 346643156 9.990000e-26 128.0
23 TraesCS2B01G019700 chr5D 91.304 92 8 0 117 208 336454708 336454799 3.590000e-25 126.0
24 TraesCS2B01G019700 chr1B 91.304 92 8 0 120 211 3928023 3928114 3.590000e-25 126.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G019700 chr2B 9117100 9120528 3428 True 6333.0 6333 100.0000 1 3429 1 chr2B.!!$R2 3428
1 TraesCS2B01G019700 chr2A 735406818 735409883 3065 False 5310.0 5310 97.8870 355 3429 1 chr2A.!!$F1 3074
2 TraesCS2B01G019700 chr2A 716469990 716472121 2131 True 3674.0 3674 97.7110 1289 3429 1 chr2A.!!$R2 2140
3 TraesCS2B01G019700 chr2A 759033662 759036628 2966 False 2496.5 4540 96.2365 354 3429 2 chr2A.!!$F2 3075
4 TraesCS2B01G019700 chr2A 716476411 716477346 935 True 1640.0 1640 98.2910 357 1292 1 chr2A.!!$R3 935
5 TraesCS2B01G019700 chr3B 771427465 771430518 3053 True 5160.0 5160 97.0730 355 3429 1 chr3B.!!$R1 3074
6 TraesCS2B01G019700 chr4D 399428720 399431818 3098 True 4126.0 4126 90.8830 355 3428 1 chr4D.!!$R1 3073
7 TraesCS2B01G019700 chr1A 489161017 489164125 3108 True 4052.0 4052 90.4380 355 3428 1 chr1A.!!$R1 3073
8 TraesCS2B01G019700 chr6A 587880276 587883381 3105 True 4006.0 4006 90.1760 355 3428 1 chr6A.!!$R1 3073
9 TraesCS2B01G019700 chr7A 56101979 56105077 3098 False 3949.0 3949 89.8880 355 3428 1 chr7A.!!$F1 3073
10 TraesCS2B01G019700 chr5B 594221391 594224484 3093 True 3917.0 3917 89.6980 355 3428 1 chr5B.!!$R1 3073
11 TraesCS2B01G019700 chr6B 711728633 711731195 2562 False 3679.0 3679 92.6130 868 3428 1 chr6B.!!$F1 2560

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
254 255 0.034863 TGCTTGCTGATGCTCATCCA 60.035 50.0 7.34 0.0 40.48 3.41 F
347 348 0.105593 TCATCTCATCCGGCAGCTTC 59.894 55.0 0.00 0.0 0.00 3.86 F
350 351 0.107993 TCTCATCCGGCAGCTTCAAG 60.108 55.0 0.00 0.0 0.00 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1743 1889 1.202475 TGCATAGATAAAGCCGCACGA 60.202 47.619 0.0 0.0 0.0 4.35 R
2330 2478 5.992217 GCTAACAGATAATAGGTTCACTGGG 59.008 44.000 0.0 0.0 0.0 4.45 R
2564 2716 3.915437 ACACGGGATAAAACAGCAAAG 57.085 42.857 0.0 0.0 0.0 2.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.245532 GCGCTAGCATAAACGCCG 59.754 61.111 16.45 0.00 45.35 6.46
22 23 2.928361 CGCTAGCATAAACGCCGG 59.072 61.111 16.45 0.00 0.00 6.13
23 24 1.881252 CGCTAGCATAAACGCCGGT 60.881 57.895 16.45 0.00 0.00 5.28
24 25 1.818221 CGCTAGCATAAACGCCGGTC 61.818 60.000 16.45 0.00 0.00 4.79
25 26 1.496403 GCTAGCATAAACGCCGGTCC 61.496 60.000 10.63 0.00 0.00 4.46
26 27 0.104304 CTAGCATAAACGCCGGTCCT 59.896 55.000 1.90 0.00 0.00 3.85
27 28 0.103572 TAGCATAAACGCCGGTCCTC 59.896 55.000 1.90 0.00 0.00 3.71
28 29 1.153429 GCATAAACGCCGGTCCTCT 60.153 57.895 1.90 0.00 0.00 3.69
29 30 0.103572 GCATAAACGCCGGTCCTCTA 59.896 55.000 1.90 0.00 0.00 2.43
30 31 1.270147 GCATAAACGCCGGTCCTCTAT 60.270 52.381 1.90 0.00 0.00 1.98
31 32 2.805657 GCATAAACGCCGGTCCTCTATT 60.806 50.000 1.90 0.00 0.00 1.73
32 33 2.877043 TAAACGCCGGTCCTCTATTC 57.123 50.000 1.90 0.00 0.00 1.75
33 34 0.179119 AAACGCCGGTCCTCTATTCG 60.179 55.000 1.90 0.00 0.00 3.34
34 35 2.354773 CGCCGGTCCTCTATTCGC 60.355 66.667 1.90 0.00 0.00 4.70
35 36 2.846652 CGCCGGTCCTCTATTCGCT 61.847 63.158 1.90 0.00 0.00 4.93
36 37 1.512996 CGCCGGTCCTCTATTCGCTA 61.513 60.000 1.90 0.00 0.00 4.26
37 38 0.889306 GCCGGTCCTCTATTCGCTAT 59.111 55.000 1.90 0.00 0.00 2.97
38 39 2.089980 GCCGGTCCTCTATTCGCTATA 58.910 52.381 1.90 0.00 0.00 1.31
39 40 2.688958 GCCGGTCCTCTATTCGCTATAT 59.311 50.000 1.90 0.00 0.00 0.86
40 41 3.881688 GCCGGTCCTCTATTCGCTATATA 59.118 47.826 1.90 0.00 0.00 0.86
41 42 4.519730 GCCGGTCCTCTATTCGCTATATAT 59.480 45.833 1.90 0.00 0.00 0.86
42 43 5.009811 GCCGGTCCTCTATTCGCTATATATT 59.990 44.000 1.90 0.00 0.00 1.28
43 44 6.439599 CCGGTCCTCTATTCGCTATATATTG 58.560 44.000 0.00 0.00 0.00 1.90
44 45 6.039493 CCGGTCCTCTATTCGCTATATATTGT 59.961 42.308 0.00 0.00 0.00 2.71
45 46 7.416438 CCGGTCCTCTATTCGCTATATATTGTT 60.416 40.741 0.00 0.00 0.00 2.83
46 47 7.974501 CGGTCCTCTATTCGCTATATATTGTTT 59.025 37.037 0.00 0.00 0.00 2.83
47 48 9.303537 GGTCCTCTATTCGCTATATATTGTTTC 57.696 37.037 0.00 0.00 0.00 2.78
54 55 6.690704 TCGCTATATATTGTTTCTCTTGCG 57.309 37.500 0.00 0.00 39.84 4.85
55 56 5.633601 TCGCTATATATTGTTTCTCTTGCGG 59.366 40.000 0.00 0.00 39.13 5.69
56 57 5.405571 CGCTATATATTGTTTCTCTTGCGGT 59.594 40.000 0.00 0.00 35.76 5.68
57 58 6.400091 CGCTATATATTGTTTCTCTTGCGGTC 60.400 42.308 0.00 0.00 35.76 4.79
58 59 6.423905 GCTATATATTGTTTCTCTTGCGGTCA 59.576 38.462 0.00 0.00 0.00 4.02
59 60 7.118390 GCTATATATTGTTTCTCTTGCGGTCAT 59.882 37.037 0.00 0.00 0.00 3.06
60 61 5.741388 ATATTGTTTCTCTTGCGGTCATC 57.259 39.130 0.00 0.00 0.00 2.92
61 62 1.808411 TGTTTCTCTTGCGGTCATCC 58.192 50.000 0.00 0.00 0.00 3.51
62 63 1.347707 TGTTTCTCTTGCGGTCATCCT 59.652 47.619 0.00 0.00 0.00 3.24
63 64 2.003301 GTTTCTCTTGCGGTCATCCTC 58.997 52.381 0.00 0.00 0.00 3.71
64 65 1.561643 TTCTCTTGCGGTCATCCTCT 58.438 50.000 0.00 0.00 0.00 3.69
65 66 0.820226 TCTCTTGCGGTCATCCTCTG 59.180 55.000 0.00 0.00 0.00 3.35
66 67 0.820226 CTCTTGCGGTCATCCTCTGA 59.180 55.000 0.00 0.00 0.00 3.27
67 68 1.205655 CTCTTGCGGTCATCCTCTGAA 59.794 52.381 0.00 0.00 35.07 3.02
68 69 1.833630 TCTTGCGGTCATCCTCTGAAT 59.166 47.619 0.00 0.00 35.07 2.57
69 70 2.237143 TCTTGCGGTCATCCTCTGAATT 59.763 45.455 0.00 0.00 35.07 2.17
70 71 2.315925 TGCGGTCATCCTCTGAATTC 57.684 50.000 0.00 0.00 35.07 2.17
71 72 1.554617 TGCGGTCATCCTCTGAATTCA 59.445 47.619 8.12 8.12 35.07 2.57
72 73 1.936547 GCGGTCATCCTCTGAATTCAC 59.063 52.381 3.38 0.00 35.07 3.18
73 74 2.555199 CGGTCATCCTCTGAATTCACC 58.445 52.381 3.38 0.64 35.07 4.02
74 75 2.169352 CGGTCATCCTCTGAATTCACCT 59.831 50.000 3.38 0.00 35.07 4.00
75 76 3.384789 CGGTCATCCTCTGAATTCACCTA 59.615 47.826 3.38 0.00 35.07 3.08
76 77 4.698575 GGTCATCCTCTGAATTCACCTAC 58.301 47.826 3.38 0.00 35.07 3.18
77 78 4.407296 GGTCATCCTCTGAATTCACCTACT 59.593 45.833 3.38 0.00 35.07 2.57
78 79 5.104735 GGTCATCCTCTGAATTCACCTACTT 60.105 44.000 3.38 0.00 35.07 2.24
79 80 5.814705 GTCATCCTCTGAATTCACCTACTTG 59.185 44.000 3.38 0.00 35.07 3.16
80 81 4.826274 TCCTCTGAATTCACCTACTTGG 57.174 45.455 3.38 0.00 42.93 3.61
81 82 3.519510 TCCTCTGAATTCACCTACTTGGG 59.480 47.826 3.38 0.00 41.11 4.12
82 83 3.264450 CCTCTGAATTCACCTACTTGGGT 59.736 47.826 3.38 0.00 41.11 4.51
83 84 4.469945 CCTCTGAATTCACCTACTTGGGTA 59.530 45.833 3.38 0.00 41.11 3.69
84 85 5.416271 TCTGAATTCACCTACTTGGGTAC 57.584 43.478 3.38 0.00 41.11 3.34
85 86 5.091552 TCTGAATTCACCTACTTGGGTACT 58.908 41.667 3.38 0.00 41.11 2.73
86 87 5.546499 TCTGAATTCACCTACTTGGGTACTT 59.454 40.000 3.38 0.00 41.11 2.24
87 88 5.556915 TGAATTCACCTACTTGGGTACTTG 58.443 41.667 3.38 0.00 41.11 3.16
88 89 4.569719 ATTCACCTACTTGGGTACTTGG 57.430 45.455 0.00 0.00 41.11 3.61
89 90 2.980548 TCACCTACTTGGGTACTTGGT 58.019 47.619 0.00 0.00 41.11 3.67
90 91 2.635915 TCACCTACTTGGGTACTTGGTG 59.364 50.000 0.00 0.00 40.31 4.17
91 92 2.370849 CACCTACTTGGGTACTTGGTGT 59.629 50.000 0.00 0.00 37.18 4.16
92 93 2.370849 ACCTACTTGGGTACTTGGTGTG 59.629 50.000 0.00 0.00 41.11 3.82
93 94 2.635915 CCTACTTGGGTACTTGGTGTGA 59.364 50.000 0.00 0.00 0.00 3.58
94 95 3.263425 CCTACTTGGGTACTTGGTGTGAT 59.737 47.826 0.00 0.00 0.00 3.06
95 96 3.418684 ACTTGGGTACTTGGTGTGATC 57.581 47.619 0.00 0.00 0.00 2.92
96 97 2.979678 ACTTGGGTACTTGGTGTGATCT 59.020 45.455 0.00 0.00 0.00 2.75
97 98 3.244561 ACTTGGGTACTTGGTGTGATCTG 60.245 47.826 0.00 0.00 0.00 2.90
98 99 1.003118 TGGGTACTTGGTGTGATCTGC 59.997 52.381 0.00 0.00 0.00 4.26
99 100 1.359848 GGTACTTGGTGTGATCTGCG 58.640 55.000 0.00 0.00 0.00 5.18
100 101 1.067142 GGTACTTGGTGTGATCTGCGA 60.067 52.381 0.00 0.00 0.00 5.10
101 102 2.263077 GTACTTGGTGTGATCTGCGAG 58.737 52.381 0.00 0.00 0.00 5.03
102 103 0.681733 ACTTGGTGTGATCTGCGAGT 59.318 50.000 0.00 0.00 0.00 4.18
103 104 1.073964 CTTGGTGTGATCTGCGAGTG 58.926 55.000 0.00 0.00 0.00 3.51
104 105 0.678950 TTGGTGTGATCTGCGAGTGA 59.321 50.000 0.00 0.00 0.00 3.41
105 106 0.897621 TGGTGTGATCTGCGAGTGAT 59.102 50.000 0.00 0.00 0.00 3.06
106 107 1.276138 TGGTGTGATCTGCGAGTGATT 59.724 47.619 0.00 0.00 0.00 2.57
107 108 2.495669 TGGTGTGATCTGCGAGTGATTA 59.504 45.455 0.00 0.00 0.00 1.75
108 109 3.119291 GGTGTGATCTGCGAGTGATTAG 58.881 50.000 0.00 0.00 0.00 1.73
109 110 3.429547 GGTGTGATCTGCGAGTGATTAGT 60.430 47.826 0.00 0.00 0.00 2.24
110 111 4.177026 GTGTGATCTGCGAGTGATTAGTT 58.823 43.478 0.00 0.00 0.00 2.24
111 112 4.627467 GTGTGATCTGCGAGTGATTAGTTT 59.373 41.667 0.00 0.00 0.00 2.66
112 113 5.120830 GTGTGATCTGCGAGTGATTAGTTTT 59.879 40.000 0.00 0.00 0.00 2.43
113 114 5.120674 TGTGATCTGCGAGTGATTAGTTTTG 59.879 40.000 0.00 0.00 0.00 2.44
114 115 5.120830 GTGATCTGCGAGTGATTAGTTTTGT 59.879 40.000 0.00 0.00 0.00 2.83
115 116 4.990543 TCTGCGAGTGATTAGTTTTGTG 57.009 40.909 0.00 0.00 0.00 3.33
116 117 4.627058 TCTGCGAGTGATTAGTTTTGTGA 58.373 39.130 0.00 0.00 0.00 3.58
117 118 5.053811 TCTGCGAGTGATTAGTTTTGTGAA 58.946 37.500 0.00 0.00 0.00 3.18
118 119 5.050363 TCTGCGAGTGATTAGTTTTGTGAAC 60.050 40.000 0.00 0.00 0.00 3.18
119 120 4.814234 TGCGAGTGATTAGTTTTGTGAACT 59.186 37.500 0.00 0.00 0.00 3.01
120 121 5.986741 TGCGAGTGATTAGTTTTGTGAACTA 59.013 36.000 0.00 0.00 0.00 2.24
121 122 6.073980 TGCGAGTGATTAGTTTTGTGAACTAC 60.074 38.462 0.00 0.00 32.94 2.73
122 123 6.145696 GCGAGTGATTAGTTTTGTGAACTACT 59.854 38.462 0.00 0.00 32.94 2.57
123 124 7.619571 GCGAGTGATTAGTTTTGTGAACTACTC 60.620 40.741 8.49 8.49 34.76 2.59
124 125 7.148787 CGAGTGATTAGTTTTGTGAACTACTCC 60.149 40.741 11.36 5.76 33.85 3.85
125 126 6.935208 AGTGATTAGTTTTGTGAACTACTCCC 59.065 38.462 11.36 3.57 33.85 4.30
126 127 6.935208 GTGATTAGTTTTGTGAACTACTCCCT 59.065 38.462 11.36 0.00 33.85 4.20
127 128 7.117956 GTGATTAGTTTTGTGAACTACTCCCTC 59.882 40.741 11.36 2.92 33.85 4.30
128 129 4.353383 AGTTTTGTGAACTACTCCCTCC 57.647 45.455 0.00 0.00 0.00 4.30
129 130 3.714798 AGTTTTGTGAACTACTCCCTCCA 59.285 43.478 0.00 0.00 0.00 3.86
130 131 4.351111 AGTTTTGTGAACTACTCCCTCCAT 59.649 41.667 0.00 0.00 0.00 3.41
131 132 5.546499 AGTTTTGTGAACTACTCCCTCCATA 59.454 40.000 0.00 0.00 0.00 2.74
132 133 6.043938 AGTTTTGTGAACTACTCCCTCCATAA 59.956 38.462 0.00 0.00 0.00 1.90
133 134 6.442541 TTTGTGAACTACTCCCTCCATAAA 57.557 37.500 0.00 0.00 0.00 1.40
134 135 5.416271 TGTGAACTACTCCCTCCATAAAC 57.584 43.478 0.00 0.00 0.00 2.01
135 136 5.091552 TGTGAACTACTCCCTCCATAAACT 58.908 41.667 0.00 0.00 0.00 2.66
136 137 6.258354 TGTGAACTACTCCCTCCATAAACTA 58.742 40.000 0.00 0.00 0.00 2.24
137 138 6.727231 TGTGAACTACTCCCTCCATAAACTAA 59.273 38.462 0.00 0.00 0.00 2.24
138 139 7.402071 TGTGAACTACTCCCTCCATAAACTAAT 59.598 37.037 0.00 0.00 0.00 1.73
139 140 8.921205 GTGAACTACTCCCTCCATAAACTAATA 58.079 37.037 0.00 0.00 0.00 0.98
140 141 9.670442 TGAACTACTCCCTCCATAAACTAATAT 57.330 33.333 0.00 0.00 0.00 1.28
146 147 8.817876 ACTCCCTCCATAAACTAATATAAGAGC 58.182 37.037 0.00 0.00 0.00 4.09
147 148 8.736097 TCCCTCCATAAACTAATATAAGAGCA 57.264 34.615 0.00 0.00 0.00 4.26
148 149 9.338968 TCCCTCCATAAACTAATATAAGAGCAT 57.661 33.333 0.00 0.00 0.00 3.79
149 150 9.965902 CCCTCCATAAACTAATATAAGAGCATT 57.034 33.333 0.00 0.00 0.00 3.56
198 199 9.530633 AAACGCTCTTATATAAGTTTACAGAGG 57.469 33.333 19.58 9.13 34.93 3.69
199 200 7.659186 ACGCTCTTATATAAGTTTACAGAGGG 58.341 38.462 19.58 17.28 42.53 4.30
200 201 7.504911 ACGCTCTTATATAAGTTTACAGAGGGA 59.495 37.037 19.58 0.00 40.49 4.20
201 202 8.024285 CGCTCTTATATAAGTTTACAGAGGGAG 58.976 40.741 19.58 8.43 40.49 4.30
202 203 8.862085 GCTCTTATATAAGTTTACAGAGGGAGT 58.138 37.037 19.58 0.00 34.93 3.85
208 209 5.485209 AAGTTTACAGAGGGAGTAGTTGG 57.515 43.478 0.00 0.00 0.00 3.77
209 210 3.838903 AGTTTACAGAGGGAGTAGTTGGG 59.161 47.826 0.00 0.00 0.00 4.12
210 211 3.555117 TTACAGAGGGAGTAGTTGGGT 57.445 47.619 0.00 0.00 0.00 4.51
211 212 4.680278 TTACAGAGGGAGTAGTTGGGTA 57.320 45.455 0.00 0.00 0.00 3.69
212 213 3.778622 ACAGAGGGAGTAGTTGGGTAT 57.221 47.619 0.00 0.00 0.00 2.73
213 214 4.076175 ACAGAGGGAGTAGTTGGGTATT 57.924 45.455 0.00 0.00 0.00 1.89
214 215 3.775316 ACAGAGGGAGTAGTTGGGTATTG 59.225 47.826 0.00 0.00 0.00 1.90
215 216 3.775316 CAGAGGGAGTAGTTGGGTATTGT 59.225 47.826 0.00 0.00 0.00 2.71
216 217 4.225267 CAGAGGGAGTAGTTGGGTATTGTT 59.775 45.833 0.00 0.00 0.00 2.83
217 218 5.424252 CAGAGGGAGTAGTTGGGTATTGTTA 59.576 44.000 0.00 0.00 0.00 2.41
218 219 5.424573 AGAGGGAGTAGTTGGGTATTGTTAC 59.575 44.000 0.00 0.00 0.00 2.50
219 220 5.347978 AGGGAGTAGTTGGGTATTGTTACT 58.652 41.667 0.00 0.00 0.00 2.24
220 221 5.424573 AGGGAGTAGTTGGGTATTGTTACTC 59.575 44.000 0.00 0.00 37.40 2.59
221 222 5.668471 GGAGTAGTTGGGTATTGTTACTCC 58.332 45.833 11.44 11.44 45.58 3.85
222 223 5.424573 GGAGTAGTTGGGTATTGTTACTCCT 59.575 44.000 17.08 0.00 46.96 3.69
223 224 6.608808 GGAGTAGTTGGGTATTGTTACTCCTA 59.391 42.308 17.08 0.00 46.96 2.94
224 225 7.289549 GGAGTAGTTGGGTATTGTTACTCCTAT 59.710 40.741 17.08 0.00 46.96 2.57
225 226 8.619683 AGTAGTTGGGTATTGTTACTCCTATT 57.380 34.615 0.00 0.00 0.00 1.73
226 227 8.702819 AGTAGTTGGGTATTGTTACTCCTATTC 58.297 37.037 0.00 0.00 0.00 1.75
227 228 7.504926 AGTTGGGTATTGTTACTCCTATTCA 57.495 36.000 0.00 0.00 0.00 2.57
228 229 7.565680 AGTTGGGTATTGTTACTCCTATTCAG 58.434 38.462 0.00 0.00 0.00 3.02
229 230 7.182206 AGTTGGGTATTGTTACTCCTATTCAGT 59.818 37.037 0.00 0.00 0.00 3.41
230 231 6.884832 TGGGTATTGTTACTCCTATTCAGTG 58.115 40.000 0.00 0.00 0.00 3.66
231 232 5.758784 GGGTATTGTTACTCCTATTCAGTGC 59.241 44.000 0.00 0.00 0.00 4.40
232 233 6.408206 GGGTATTGTTACTCCTATTCAGTGCT 60.408 42.308 0.00 0.00 0.00 4.40
233 234 6.702282 GGTATTGTTACTCCTATTCAGTGCTC 59.298 42.308 0.00 0.00 0.00 4.26
234 235 4.737855 TGTTACTCCTATTCAGTGCTCC 57.262 45.455 0.00 0.00 0.00 4.70
235 236 4.353777 TGTTACTCCTATTCAGTGCTCCT 58.646 43.478 0.00 0.00 0.00 3.69
236 237 4.160439 TGTTACTCCTATTCAGTGCTCCTG 59.840 45.833 0.00 0.00 42.97 3.86
237 238 1.484240 ACTCCTATTCAGTGCTCCTGC 59.516 52.381 0.00 0.00 41.25 4.85
238 239 1.761784 CTCCTATTCAGTGCTCCTGCT 59.238 52.381 0.00 0.00 41.25 4.24
239 240 2.170187 CTCCTATTCAGTGCTCCTGCTT 59.830 50.000 0.00 0.00 41.25 3.91
240 241 2.093288 TCCTATTCAGTGCTCCTGCTTG 60.093 50.000 0.00 0.00 41.25 4.01
241 242 1.669779 CTATTCAGTGCTCCTGCTTGC 59.330 52.381 0.00 0.00 41.25 4.01
242 243 0.037877 ATTCAGTGCTCCTGCTTGCT 59.962 50.000 0.00 0.00 41.25 3.91
243 244 0.887836 TTCAGTGCTCCTGCTTGCTG 60.888 55.000 0.00 0.00 41.25 4.41
244 245 1.302271 CAGTGCTCCTGCTTGCTGA 60.302 57.895 1.05 0.00 40.48 4.26
245 246 0.677098 CAGTGCTCCTGCTTGCTGAT 60.677 55.000 1.05 0.00 40.48 2.90
246 247 0.677098 AGTGCTCCTGCTTGCTGATG 60.677 55.000 1.05 0.00 40.48 3.07
247 248 2.044555 TGCTCCTGCTTGCTGATGC 61.045 57.895 1.05 5.66 40.48 3.91
248 249 1.749638 GCTCCTGCTTGCTGATGCT 60.750 57.895 1.05 0.00 36.79 3.79
249 250 1.716826 GCTCCTGCTTGCTGATGCTC 61.717 60.000 1.05 0.00 36.79 4.26
250 251 0.392595 CTCCTGCTTGCTGATGCTCA 60.393 55.000 1.05 0.00 40.48 4.26
251 252 0.255033 TCCTGCTTGCTGATGCTCAT 59.745 50.000 1.05 0.00 40.48 2.90
252 253 0.663688 CCTGCTTGCTGATGCTCATC 59.336 55.000 3.03 3.03 40.48 2.92
253 254 0.663688 CTGCTTGCTGATGCTCATCC 59.336 55.000 7.34 0.00 40.48 3.51
254 255 0.034863 TGCTTGCTGATGCTCATCCA 60.035 50.000 7.34 0.00 40.48 3.41
255 256 0.381089 GCTTGCTGATGCTCATCCAC 59.619 55.000 7.34 0.86 40.48 4.02
256 257 1.746470 CTTGCTGATGCTCATCCACA 58.254 50.000 7.34 3.25 40.48 4.17
257 258 2.298610 CTTGCTGATGCTCATCCACAT 58.701 47.619 7.34 0.00 40.48 3.21
258 259 1.675552 TGCTGATGCTCATCCACATG 58.324 50.000 7.34 0.00 40.48 3.21
259 260 1.064979 TGCTGATGCTCATCCACATGT 60.065 47.619 7.34 0.00 40.48 3.21
260 261 2.171027 TGCTGATGCTCATCCACATGTA 59.829 45.455 0.00 0.00 40.48 2.29
261 262 2.547211 GCTGATGCTCATCCACATGTAC 59.453 50.000 0.00 0.00 37.02 2.90
262 263 2.798847 CTGATGCTCATCCACATGTACG 59.201 50.000 0.00 0.00 37.02 3.67
263 264 1.528586 GATGCTCATCCACATGTACGC 59.471 52.381 0.00 0.00 31.76 4.42
264 265 0.248843 TGCTCATCCACATGTACGCA 59.751 50.000 0.00 0.00 31.28 5.24
265 266 1.134431 TGCTCATCCACATGTACGCAT 60.134 47.619 0.00 0.00 35.32 4.73
266 267 6.367070 GATGCTCATCCACATGTACGCATG 62.367 50.000 15.55 6.09 43.10 4.06
277 278 4.785511 ATGTACGCATGAGGATACCTAC 57.214 45.455 0.00 0.00 31.76 3.18
278 279 2.889045 TGTACGCATGAGGATACCTACC 59.111 50.000 0.00 0.00 31.76 3.18
279 280 2.383442 ACGCATGAGGATACCTACCT 57.617 50.000 0.00 0.00 40.80 3.08
280 281 3.520691 ACGCATGAGGATACCTACCTA 57.479 47.619 0.00 0.00 37.93 3.08
281 282 3.155501 ACGCATGAGGATACCTACCTAC 58.844 50.000 0.00 0.00 37.93 3.18
282 283 2.492484 CGCATGAGGATACCTACCTACC 59.508 54.545 0.00 0.00 37.93 3.18
283 284 3.780626 GCATGAGGATACCTACCTACCT 58.219 50.000 0.00 0.00 37.93 3.08
284 285 4.567116 CGCATGAGGATACCTACCTACCTA 60.567 50.000 0.00 0.00 37.93 3.08
285 286 4.951094 GCATGAGGATACCTACCTACCTAG 59.049 50.000 0.00 0.00 37.93 3.02
286 287 4.654389 TGAGGATACCTACCTACCTAGC 57.346 50.000 0.00 0.00 37.93 3.42
287 288 3.008813 TGAGGATACCTACCTACCTAGCG 59.991 52.174 0.00 0.00 37.93 4.26
288 289 3.254960 AGGATACCTACCTACCTAGCGA 58.745 50.000 0.00 0.00 35.84 4.93
289 290 3.654806 AGGATACCTACCTACCTAGCGAA 59.345 47.826 0.00 0.00 35.84 4.70
290 291 4.105377 AGGATACCTACCTACCTAGCGAAA 59.895 45.833 0.00 0.00 35.84 3.46
291 292 5.015515 GGATACCTACCTACCTAGCGAAAT 58.984 45.833 0.00 0.00 0.00 2.17
292 293 5.105837 GGATACCTACCTACCTAGCGAAATG 60.106 48.000 0.00 0.00 0.00 2.32
293 294 3.907221 ACCTACCTACCTAGCGAAATGA 58.093 45.455 0.00 0.00 0.00 2.57
294 295 3.635836 ACCTACCTACCTAGCGAAATGAC 59.364 47.826 0.00 0.00 0.00 3.06
295 296 2.865343 ACCTACCTAGCGAAATGACG 57.135 50.000 0.00 0.00 0.00 4.35
296 297 2.372264 ACCTACCTAGCGAAATGACGA 58.628 47.619 0.00 0.00 35.09 4.20
297 298 2.358267 ACCTACCTAGCGAAATGACGAG 59.642 50.000 0.00 0.00 35.09 4.18
298 299 2.386249 CTACCTAGCGAAATGACGAGC 58.614 52.381 0.00 0.00 35.09 5.03
299 300 0.818296 ACCTAGCGAAATGACGAGCT 59.182 50.000 0.00 0.00 43.07 4.09
300 301 1.204941 ACCTAGCGAAATGACGAGCTT 59.795 47.619 0.00 0.00 40.73 3.74
301 302 1.590238 CCTAGCGAAATGACGAGCTTG 59.410 52.381 0.00 0.00 40.73 4.01
302 303 2.263077 CTAGCGAAATGACGAGCTTGT 58.737 47.619 6.22 6.22 40.73 3.16
303 304 1.512926 AGCGAAATGACGAGCTTGTT 58.487 45.000 8.34 0.00 36.41 2.83
304 305 1.461127 AGCGAAATGACGAGCTTGTTC 59.539 47.619 8.34 0.50 36.41 3.18
305 306 1.461127 GCGAAATGACGAGCTTGTTCT 59.539 47.619 8.34 0.00 35.09 3.01
306 307 2.096218 GCGAAATGACGAGCTTGTTCTT 60.096 45.455 8.34 2.22 35.09 2.52
307 308 3.726436 CGAAATGACGAGCTTGTTCTTC 58.274 45.455 8.34 10.20 35.09 2.87
308 309 3.430218 CGAAATGACGAGCTTGTTCTTCT 59.570 43.478 8.34 0.00 35.09 2.85
309 310 4.433544 CGAAATGACGAGCTTGTTCTTCTC 60.434 45.833 8.34 1.59 35.09 2.87
312 313 2.074124 CGAGCTTGTTCTTCTCGGC 58.926 57.895 3.26 0.00 44.06 5.54
313 314 1.355066 CGAGCTTGTTCTTCTCGGCC 61.355 60.000 0.00 0.00 44.06 6.13
314 315 0.320771 GAGCTTGTTCTTCTCGGCCA 60.321 55.000 2.24 0.00 0.00 5.36
315 316 0.108585 AGCTTGTTCTTCTCGGCCAA 59.891 50.000 2.24 0.00 0.00 4.52
316 317 0.519077 GCTTGTTCTTCTCGGCCAAG 59.481 55.000 2.24 0.00 36.47 3.61
317 318 0.519077 CTTGTTCTTCTCGGCCAAGC 59.481 55.000 2.24 0.00 0.00 4.01
318 319 0.179032 TTGTTCTTCTCGGCCAAGCA 60.179 50.000 2.24 0.00 0.00 3.91
319 320 0.179032 TGTTCTTCTCGGCCAAGCAA 60.179 50.000 2.24 0.00 0.00 3.91
320 321 1.168714 GTTCTTCTCGGCCAAGCAAT 58.831 50.000 2.24 0.00 0.00 3.56
321 322 1.131315 GTTCTTCTCGGCCAAGCAATC 59.869 52.381 2.24 0.00 0.00 2.67
322 323 0.392998 TCTTCTCGGCCAAGCAATCC 60.393 55.000 2.24 0.00 0.00 3.01
323 324 0.393537 CTTCTCGGCCAAGCAATCCT 60.394 55.000 2.24 0.00 0.00 3.24
324 325 0.677731 TTCTCGGCCAAGCAATCCTG 60.678 55.000 2.24 0.00 0.00 3.86
335 336 2.616634 GCAATCCTGCTCTCATCTCA 57.383 50.000 0.00 0.00 45.74 3.27
336 337 3.128852 GCAATCCTGCTCTCATCTCAT 57.871 47.619 0.00 0.00 45.74 2.90
337 338 3.068560 GCAATCCTGCTCTCATCTCATC 58.931 50.000 0.00 0.00 45.74 2.92
338 339 3.666274 CAATCCTGCTCTCATCTCATCC 58.334 50.000 0.00 0.00 0.00 3.51
339 340 1.326328 TCCTGCTCTCATCTCATCCG 58.674 55.000 0.00 0.00 0.00 4.18
340 341 0.317799 CCTGCTCTCATCTCATCCGG 59.682 60.000 0.00 0.00 0.00 5.14
341 342 0.319727 CTGCTCTCATCTCATCCGGC 60.320 60.000 0.00 0.00 0.00 6.13
342 343 1.044790 TGCTCTCATCTCATCCGGCA 61.045 55.000 0.00 0.00 0.00 5.69
343 344 0.319727 GCTCTCATCTCATCCGGCAG 60.320 60.000 0.00 0.00 0.00 4.85
344 345 0.319727 CTCTCATCTCATCCGGCAGC 60.320 60.000 0.00 0.00 0.00 5.25
345 346 0.758310 TCTCATCTCATCCGGCAGCT 60.758 55.000 0.00 0.00 0.00 4.24
346 347 0.106335 CTCATCTCATCCGGCAGCTT 59.894 55.000 0.00 0.00 0.00 3.74
347 348 0.105593 TCATCTCATCCGGCAGCTTC 59.894 55.000 0.00 0.00 0.00 3.86
348 349 0.179065 CATCTCATCCGGCAGCTTCA 60.179 55.000 0.00 0.00 0.00 3.02
349 350 0.543277 ATCTCATCCGGCAGCTTCAA 59.457 50.000 0.00 0.00 0.00 2.69
350 351 0.107993 TCTCATCCGGCAGCTTCAAG 60.108 55.000 0.00 0.00 0.00 3.02
351 352 0.392193 CTCATCCGGCAGCTTCAAGT 60.392 55.000 0.00 0.00 0.00 3.16
352 353 0.391661 TCATCCGGCAGCTTCAAGTC 60.392 55.000 0.00 0.00 0.00 3.01
567 573 1.495579 ATGGCACCAGAGCAGGTTCT 61.496 55.000 0.00 0.00 40.77 3.01
714 720 4.479993 ATCCCTGCTGCAGTCCGC 62.480 66.667 26.41 1.48 42.89 5.54
822 948 3.181478 CGTTCTTCCTGGTACCTATCACC 60.181 52.174 14.36 0.00 36.54 4.02
1164 1301 1.985159 TCAGGTCCTGGCAACTATGTT 59.015 47.619 19.11 0.00 37.61 2.71
1205 1342 6.312141 TCAATTGATACTGAGTTCCCATGA 57.688 37.500 3.38 0.00 0.00 3.07
1417 1563 3.572196 AAAATGCAGGCAACCCGCG 62.572 57.895 0.00 0.00 43.84 6.46
1909 2057 3.382227 GGAAAAAGGAAAACCTCGGACAA 59.618 43.478 0.00 0.00 0.00 3.18
2182 2330 4.560739 TCATATGACAGGGGATTCAGACT 58.439 43.478 0.00 0.00 0.00 3.24
2323 2471 2.804527 GTTCTACACGTTCCCAAGTTCC 59.195 50.000 0.00 0.00 0.00 3.62
2324 2472 1.345415 TCTACACGTTCCCAAGTTCCC 59.655 52.381 0.00 0.00 0.00 3.97
2325 2473 1.071071 CTACACGTTCCCAAGTTCCCA 59.929 52.381 0.00 0.00 0.00 4.37
2326 2474 0.256464 ACACGTTCCCAAGTTCCCAA 59.744 50.000 0.00 0.00 0.00 4.12
2327 2475 0.951558 CACGTTCCCAAGTTCCCAAG 59.048 55.000 0.00 0.00 0.00 3.61
2328 2476 0.549469 ACGTTCCCAAGTTCCCAAGT 59.451 50.000 0.00 0.00 0.00 3.16
2329 2477 1.064240 ACGTTCCCAAGTTCCCAAGTT 60.064 47.619 0.00 0.00 0.00 2.66
2330 2478 1.607148 CGTTCCCAAGTTCCCAAGTTC 59.393 52.381 0.00 0.00 0.00 3.01
2564 2716 1.755783 CAGGCTTGGGCATCCTTCC 60.756 63.158 0.00 0.00 40.87 3.46
2603 2755 7.558444 TCCCGTGTTTATCCTGCTTTATTTAAT 59.442 33.333 0.00 0.00 0.00 1.40
2664 2816 3.323979 GCTAGCTAAACATACTAGGGGCA 59.676 47.826 7.70 0.00 35.09 5.36
2730 2882 1.060729 TCACTCCGATGTTTGGGGAA 58.939 50.000 0.00 0.00 0.00 3.97
2853 3005 9.478019 GTGATGTATTATCTGTTTTCAAAGACG 57.522 33.333 0.00 0.00 0.00 4.18
2874 3026 6.655848 AGACGTGTGTGCCCTTATTAAAAATA 59.344 34.615 0.00 0.00 0.00 1.40
2956 3108 7.436080 TCATGAGTTTGAATTGTTTCTTGCTTC 59.564 33.333 0.00 0.00 32.78 3.86
3248 3401 8.791675 TGTTTTGTGCATGACTATAGAAATTCA 58.208 29.630 6.78 0.00 0.00 2.57
3415 3569 4.764823 TGAATCAAATGTTGGGTCTGGTAC 59.235 41.667 0.00 0.00 0.00 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 1.818221 GACCGGCGTTTATGCTAGCG 61.818 60.000 10.77 0.00 34.52 4.26
6 7 1.496403 GGACCGGCGTTTATGCTAGC 61.496 60.000 8.10 8.10 34.52 3.42
7 8 0.104304 AGGACCGGCGTTTATGCTAG 59.896 55.000 6.01 0.00 34.52 3.42
8 9 0.103572 GAGGACCGGCGTTTATGCTA 59.896 55.000 6.01 0.00 34.52 3.49
9 10 1.153429 GAGGACCGGCGTTTATGCT 60.153 57.895 6.01 0.00 34.52 3.79
10 11 0.103572 TAGAGGACCGGCGTTTATGC 59.896 55.000 6.01 0.00 0.00 3.14
11 12 2.814280 ATAGAGGACCGGCGTTTATG 57.186 50.000 6.01 0.00 0.00 1.90
12 13 2.288030 CGAATAGAGGACCGGCGTTTAT 60.288 50.000 6.01 0.00 0.00 1.40
13 14 1.066002 CGAATAGAGGACCGGCGTTTA 59.934 52.381 6.01 0.00 0.00 2.01
14 15 0.179119 CGAATAGAGGACCGGCGTTT 60.179 55.000 6.01 0.00 0.00 3.60
15 16 1.436336 CGAATAGAGGACCGGCGTT 59.564 57.895 6.01 0.00 0.00 4.84
16 17 3.117372 CGAATAGAGGACCGGCGT 58.883 61.111 6.01 0.00 0.00 5.68
17 18 1.512996 TAGCGAATAGAGGACCGGCG 61.513 60.000 0.00 0.00 0.00 6.46
18 19 0.889306 ATAGCGAATAGAGGACCGGC 59.111 55.000 0.00 0.00 0.00 6.13
19 20 6.039493 ACAATATATAGCGAATAGAGGACCGG 59.961 42.308 0.00 0.00 0.00 5.28
20 21 7.028926 ACAATATATAGCGAATAGAGGACCG 57.971 40.000 0.00 0.00 0.00 4.79
21 22 9.303537 GAAACAATATATAGCGAATAGAGGACC 57.696 37.037 0.00 0.00 0.00 4.46
28 29 8.860128 CGCAAGAGAAACAATATATAGCGAATA 58.140 33.333 0.00 0.00 42.47 1.75
29 30 7.148573 CCGCAAGAGAAACAATATATAGCGAAT 60.149 37.037 0.00 0.00 42.47 3.34
30 31 6.145534 CCGCAAGAGAAACAATATATAGCGAA 59.854 38.462 0.00 0.00 42.47 4.70
31 32 5.633601 CCGCAAGAGAAACAATATATAGCGA 59.366 40.000 0.00 0.00 42.47 4.93
32 33 5.405571 ACCGCAAGAGAAACAATATATAGCG 59.594 40.000 0.00 0.00 43.02 4.26
33 34 6.423905 TGACCGCAAGAGAAACAATATATAGC 59.576 38.462 0.00 0.00 43.02 2.97
34 35 7.946655 TGACCGCAAGAGAAACAATATATAG 57.053 36.000 0.00 0.00 43.02 1.31
35 36 7.602644 GGATGACCGCAAGAGAAACAATATATA 59.397 37.037 0.00 0.00 43.02 0.86
36 37 6.428159 GGATGACCGCAAGAGAAACAATATAT 59.572 38.462 0.00 0.00 43.02 0.86
37 38 5.758296 GGATGACCGCAAGAGAAACAATATA 59.242 40.000 0.00 0.00 43.02 0.86
38 39 4.576463 GGATGACCGCAAGAGAAACAATAT 59.424 41.667 0.00 0.00 43.02 1.28
39 40 3.938963 GGATGACCGCAAGAGAAACAATA 59.061 43.478 0.00 0.00 43.02 1.90
40 41 2.749621 GGATGACCGCAAGAGAAACAAT 59.250 45.455 0.00 0.00 43.02 2.71
41 42 2.151202 GGATGACCGCAAGAGAAACAA 58.849 47.619 0.00 0.00 43.02 2.83
42 43 1.347707 AGGATGACCGCAAGAGAAACA 59.652 47.619 0.00 0.00 41.83 2.83
43 44 2.003301 GAGGATGACCGCAAGAGAAAC 58.997 52.381 0.00 0.00 41.83 2.78
44 45 1.902508 AGAGGATGACCGCAAGAGAAA 59.097 47.619 0.00 0.00 41.83 2.52
45 46 1.205655 CAGAGGATGACCGCAAGAGAA 59.794 52.381 0.00 0.00 41.83 2.87
46 47 0.820226 CAGAGGATGACCGCAAGAGA 59.180 55.000 0.00 0.00 41.83 3.10
47 48 0.820226 TCAGAGGATGACCGCAAGAG 59.180 55.000 0.00 0.00 41.83 2.85
48 49 1.266178 TTCAGAGGATGACCGCAAGA 58.734 50.000 0.00 0.00 37.77 3.02
49 50 2.322355 ATTCAGAGGATGACCGCAAG 57.678 50.000 0.00 0.00 37.77 4.01
50 51 2.027285 TGAATTCAGAGGATGACCGCAA 60.027 45.455 3.38 0.00 37.77 4.85
51 52 1.554617 TGAATTCAGAGGATGACCGCA 59.445 47.619 3.38 0.00 37.77 5.69
52 53 1.936547 GTGAATTCAGAGGATGACCGC 59.063 52.381 8.80 0.00 37.77 5.68
53 54 2.169352 AGGTGAATTCAGAGGATGACCG 59.831 50.000 8.80 0.00 37.77 4.79
54 55 3.922171 AGGTGAATTCAGAGGATGACC 57.078 47.619 8.80 3.84 37.77 4.02
55 56 5.606348 AGTAGGTGAATTCAGAGGATGAC 57.394 43.478 8.80 0.91 37.77 3.06
56 57 5.104776 CCAAGTAGGTGAATTCAGAGGATGA 60.105 44.000 8.80 0.00 35.62 2.92
57 58 5.121811 CCAAGTAGGTGAATTCAGAGGATG 58.878 45.833 8.80 4.46 0.00 3.51
58 59 4.164988 CCCAAGTAGGTGAATTCAGAGGAT 59.835 45.833 8.80 0.00 34.66 3.24
59 60 3.519510 CCCAAGTAGGTGAATTCAGAGGA 59.480 47.826 8.80 0.00 34.66 3.71
60 61 3.264450 ACCCAAGTAGGTGAATTCAGAGG 59.736 47.826 8.80 3.76 39.24 3.69
61 62 4.559862 ACCCAAGTAGGTGAATTCAGAG 57.440 45.455 8.80 0.00 39.24 3.35
62 63 5.091552 AGTACCCAAGTAGGTGAATTCAGA 58.908 41.667 8.80 0.00 41.42 3.27
63 64 5.422214 AGTACCCAAGTAGGTGAATTCAG 57.578 43.478 8.80 0.00 41.42 3.02
64 65 5.514136 CCAAGTACCCAAGTAGGTGAATTCA 60.514 44.000 3.38 3.38 41.42 2.57
65 66 4.941873 CCAAGTACCCAAGTAGGTGAATTC 59.058 45.833 0.00 0.00 41.42 2.17
66 67 4.352893 ACCAAGTACCCAAGTAGGTGAATT 59.647 41.667 0.00 0.00 41.42 2.17
67 68 3.914435 ACCAAGTACCCAAGTAGGTGAAT 59.086 43.478 0.00 0.00 41.42 2.57
68 69 3.071892 CACCAAGTACCCAAGTAGGTGAA 59.928 47.826 0.00 0.00 41.53 3.18
69 70 2.635915 CACCAAGTACCCAAGTAGGTGA 59.364 50.000 0.00 0.00 41.53 4.02
70 71 2.370849 ACACCAAGTACCCAAGTAGGTG 59.629 50.000 0.00 0.00 43.24 4.00
71 72 2.370849 CACACCAAGTACCCAAGTAGGT 59.629 50.000 0.00 0.00 44.37 3.08
72 73 2.635915 TCACACCAAGTACCCAAGTAGG 59.364 50.000 0.00 0.00 37.03 3.18
73 74 4.223032 AGATCACACCAAGTACCCAAGTAG 59.777 45.833 0.00 0.00 0.00 2.57
74 75 4.020573 CAGATCACACCAAGTACCCAAGTA 60.021 45.833 0.00 0.00 0.00 2.24
75 76 2.979678 AGATCACACCAAGTACCCAAGT 59.020 45.455 0.00 0.00 0.00 3.16
76 77 3.338249 CAGATCACACCAAGTACCCAAG 58.662 50.000 0.00 0.00 0.00 3.61
77 78 2.552155 GCAGATCACACCAAGTACCCAA 60.552 50.000 0.00 0.00 0.00 4.12
78 79 1.003118 GCAGATCACACCAAGTACCCA 59.997 52.381 0.00 0.00 0.00 4.51
79 80 1.739067 GCAGATCACACCAAGTACCC 58.261 55.000 0.00 0.00 0.00 3.69
80 81 1.067142 TCGCAGATCACACCAAGTACC 60.067 52.381 0.00 0.00 0.00 3.34
81 82 2.263077 CTCGCAGATCACACCAAGTAC 58.737 52.381 0.00 0.00 33.89 2.73
82 83 1.893137 ACTCGCAGATCACACCAAGTA 59.107 47.619 0.00 0.00 33.89 2.24
83 84 0.681733 ACTCGCAGATCACACCAAGT 59.318 50.000 0.00 0.00 33.89 3.16
84 85 1.073964 CACTCGCAGATCACACCAAG 58.926 55.000 0.00 0.00 33.89 3.61
85 86 0.678950 TCACTCGCAGATCACACCAA 59.321 50.000 0.00 0.00 33.89 3.67
86 87 0.897621 ATCACTCGCAGATCACACCA 59.102 50.000 0.00 0.00 33.89 4.17
87 88 2.015736 AATCACTCGCAGATCACACC 57.984 50.000 0.00 0.00 33.89 4.16
88 89 3.775202 ACTAATCACTCGCAGATCACAC 58.225 45.455 0.00 0.00 33.89 3.82
89 90 4.456280 AACTAATCACTCGCAGATCACA 57.544 40.909 0.00 0.00 33.89 3.58
90 91 5.120830 ACAAAACTAATCACTCGCAGATCAC 59.879 40.000 0.00 0.00 33.89 3.06
91 92 5.120674 CACAAAACTAATCACTCGCAGATCA 59.879 40.000 0.00 0.00 33.89 2.92
92 93 5.348724 TCACAAAACTAATCACTCGCAGATC 59.651 40.000 0.00 0.00 33.89 2.75
93 94 5.237815 TCACAAAACTAATCACTCGCAGAT 58.762 37.500 0.00 0.00 33.89 2.90
94 95 4.627058 TCACAAAACTAATCACTCGCAGA 58.373 39.130 0.00 0.00 0.00 4.26
95 96 4.990543 TCACAAAACTAATCACTCGCAG 57.009 40.909 0.00 0.00 0.00 5.18
96 97 4.814234 AGTTCACAAAACTAATCACTCGCA 59.186 37.500 0.00 0.00 0.00 5.10
97 98 5.344207 AGTTCACAAAACTAATCACTCGC 57.656 39.130 0.00 0.00 0.00 5.03
98 99 7.148787 GGAGTAGTTCACAAAACTAATCACTCG 60.149 40.741 20.36 0.00 44.80 4.18
99 100 7.117956 GGGAGTAGTTCACAAAACTAATCACTC 59.882 40.741 20.36 14.64 43.76 3.51
100 101 6.935208 GGGAGTAGTTCACAAAACTAATCACT 59.065 38.462 20.36 8.55 43.76 3.41
101 102 6.935208 AGGGAGTAGTTCACAAAACTAATCAC 59.065 38.462 20.36 18.26 46.01 3.06
102 103 7.074653 AGGGAGTAGTTCACAAAACTAATCA 57.925 36.000 20.36 0.00 44.80 2.57
103 104 6.594547 GGAGGGAGTAGTTCACAAAACTAATC 59.405 42.308 13.95 13.95 43.27 1.75
104 105 6.043938 TGGAGGGAGTAGTTCACAAAACTAAT 59.956 38.462 0.00 0.00 34.84 1.73
105 106 5.367352 TGGAGGGAGTAGTTCACAAAACTAA 59.633 40.000 0.00 0.00 34.84 2.24
106 107 4.903049 TGGAGGGAGTAGTTCACAAAACTA 59.097 41.667 0.00 0.00 0.00 2.24
107 108 3.714798 TGGAGGGAGTAGTTCACAAAACT 59.285 43.478 0.00 0.00 0.00 2.66
108 109 4.081322 TGGAGGGAGTAGTTCACAAAAC 57.919 45.455 0.00 0.00 0.00 2.43
109 110 4.993705 ATGGAGGGAGTAGTTCACAAAA 57.006 40.909 0.00 0.00 0.00 2.44
110 111 6.043938 AGTTTATGGAGGGAGTAGTTCACAAA 59.956 38.462 0.00 0.00 0.00 2.83
111 112 5.546499 AGTTTATGGAGGGAGTAGTTCACAA 59.454 40.000 0.00 0.00 0.00 3.33
112 113 5.091552 AGTTTATGGAGGGAGTAGTTCACA 58.908 41.667 0.00 0.00 0.00 3.58
113 114 5.678955 AGTTTATGGAGGGAGTAGTTCAC 57.321 43.478 0.00 0.00 0.00 3.18
114 115 7.989947 ATTAGTTTATGGAGGGAGTAGTTCA 57.010 36.000 0.00 0.00 0.00 3.18
120 121 8.817876 GCTCTTATATTAGTTTATGGAGGGAGT 58.182 37.037 0.00 0.00 0.00 3.85
121 122 8.816894 TGCTCTTATATTAGTTTATGGAGGGAG 58.183 37.037 0.00 0.00 0.00 4.30
122 123 8.736097 TGCTCTTATATTAGTTTATGGAGGGA 57.264 34.615 0.00 0.00 0.00 4.20
123 124 9.965902 AATGCTCTTATATTAGTTTATGGAGGG 57.034 33.333 0.00 0.00 0.00 4.30
172 173 9.530633 CCTCTGTAAACTTATATAAGAGCGTTT 57.469 33.333 25.83 18.28 37.08 3.60
173 174 8.142551 CCCTCTGTAAACTTATATAAGAGCGTT 58.857 37.037 25.83 15.99 37.08 4.84
174 175 7.504911 TCCCTCTGTAAACTTATATAAGAGCGT 59.495 37.037 25.83 11.63 37.08 5.07
175 176 7.883217 TCCCTCTGTAAACTTATATAAGAGCG 58.117 38.462 25.83 9.53 37.08 5.03
176 177 8.862085 ACTCCCTCTGTAAACTTATATAAGAGC 58.138 37.037 25.83 13.66 37.08 4.09
182 183 8.925338 CCAACTACTCCCTCTGTAAACTTATAT 58.075 37.037 0.00 0.00 0.00 0.86
183 184 7.343833 CCCAACTACTCCCTCTGTAAACTTATA 59.656 40.741 0.00 0.00 0.00 0.98
184 185 6.156429 CCCAACTACTCCCTCTGTAAACTTAT 59.844 42.308 0.00 0.00 0.00 1.73
185 186 5.482878 CCCAACTACTCCCTCTGTAAACTTA 59.517 44.000 0.00 0.00 0.00 2.24
186 187 4.286291 CCCAACTACTCCCTCTGTAAACTT 59.714 45.833 0.00 0.00 0.00 2.66
187 188 3.838903 CCCAACTACTCCCTCTGTAAACT 59.161 47.826 0.00 0.00 0.00 2.66
188 189 3.581770 ACCCAACTACTCCCTCTGTAAAC 59.418 47.826 0.00 0.00 0.00 2.01
189 190 3.865571 ACCCAACTACTCCCTCTGTAAA 58.134 45.455 0.00 0.00 0.00 2.01
190 191 3.555117 ACCCAACTACTCCCTCTGTAA 57.445 47.619 0.00 0.00 0.00 2.41
191 192 4.894252 ATACCCAACTACTCCCTCTGTA 57.106 45.455 0.00 0.00 0.00 2.74
192 193 3.775316 CAATACCCAACTACTCCCTCTGT 59.225 47.826 0.00 0.00 0.00 3.41
193 194 3.775316 ACAATACCCAACTACTCCCTCTG 59.225 47.826 0.00 0.00 0.00 3.35
194 195 4.076175 ACAATACCCAACTACTCCCTCT 57.924 45.455 0.00 0.00 0.00 3.69
195 196 4.838904 AACAATACCCAACTACTCCCTC 57.161 45.455 0.00 0.00 0.00 4.30
196 197 5.347978 AGTAACAATACCCAACTACTCCCT 58.652 41.667 0.00 0.00 32.08 4.20
197 198 5.396101 GGAGTAACAATACCCAACTACTCCC 60.396 48.000 12.95 0.00 45.05 4.30
198 199 5.668471 GGAGTAACAATACCCAACTACTCC 58.332 45.833 9.63 9.63 44.79 3.85
199 200 6.541934 AGGAGTAACAATACCCAACTACTC 57.458 41.667 0.00 0.00 36.23 2.59
200 201 8.619683 AATAGGAGTAACAATACCCAACTACT 57.380 34.615 0.00 0.00 35.53 2.57
201 202 8.480501 TGAATAGGAGTAACAATACCCAACTAC 58.519 37.037 0.00 0.00 32.08 2.73
202 203 8.612486 TGAATAGGAGTAACAATACCCAACTA 57.388 34.615 0.00 0.00 32.08 2.24
203 204 7.182206 ACTGAATAGGAGTAACAATACCCAACT 59.818 37.037 0.00 0.00 32.08 3.16
204 205 7.280205 CACTGAATAGGAGTAACAATACCCAAC 59.720 40.741 0.00 0.00 32.08 3.77
205 206 7.335627 CACTGAATAGGAGTAACAATACCCAA 58.664 38.462 0.00 0.00 32.08 4.12
206 207 6.631766 GCACTGAATAGGAGTAACAATACCCA 60.632 42.308 0.00 0.00 32.08 4.51
207 208 5.758784 GCACTGAATAGGAGTAACAATACCC 59.241 44.000 0.00 0.00 32.08 3.69
208 209 6.583562 AGCACTGAATAGGAGTAACAATACC 58.416 40.000 0.00 0.00 32.08 2.73
209 210 6.702282 GGAGCACTGAATAGGAGTAACAATAC 59.298 42.308 0.00 0.00 0.00 1.89
210 211 6.611642 AGGAGCACTGAATAGGAGTAACAATA 59.388 38.462 0.00 0.00 0.00 1.90
211 212 5.426833 AGGAGCACTGAATAGGAGTAACAAT 59.573 40.000 0.00 0.00 0.00 2.71
212 213 4.777896 AGGAGCACTGAATAGGAGTAACAA 59.222 41.667 0.00 0.00 0.00 2.83
213 214 4.353777 AGGAGCACTGAATAGGAGTAACA 58.646 43.478 0.00 0.00 0.00 2.41
227 228 0.677098 CATCAGCAAGCAGGAGCACT 60.677 55.000 0.00 0.00 45.49 4.40
228 229 1.801332 CATCAGCAAGCAGGAGCAC 59.199 57.895 0.00 0.00 45.49 4.40
229 230 2.044555 GCATCAGCAAGCAGGAGCA 61.045 57.895 0.00 0.00 41.72 4.26
230 231 1.716826 GAGCATCAGCAAGCAGGAGC 61.717 60.000 0.00 0.00 45.49 4.70
231 232 0.392595 TGAGCATCAGCAAGCAGGAG 60.393 55.000 0.00 0.00 42.56 3.69
232 233 1.681076 TGAGCATCAGCAAGCAGGA 59.319 52.632 0.00 0.00 42.56 3.86
233 234 4.313819 TGAGCATCAGCAAGCAGG 57.686 55.556 0.00 0.00 42.56 4.85
242 243 6.781155 ATGCGTACATGTGGATGAGCATCA 62.781 45.833 9.11 0.00 42.67 3.07
243 244 1.528586 GCGTACATGTGGATGAGCATC 59.471 52.381 9.11 1.86 37.11 3.91
244 245 1.134431 TGCGTACATGTGGATGAGCAT 60.134 47.619 9.11 0.00 35.11 3.79
245 246 0.248843 TGCGTACATGTGGATGAGCA 59.751 50.000 9.11 7.98 36.47 4.26
246 247 1.586422 ATGCGTACATGTGGATGAGC 58.414 50.000 9.11 5.45 34.35 4.26
256 257 3.510360 GGTAGGTATCCTCATGCGTACAT 59.490 47.826 0.00 0.00 37.58 2.29
257 258 2.889045 GGTAGGTATCCTCATGCGTACA 59.111 50.000 0.00 0.00 37.58 2.90
258 259 3.155501 AGGTAGGTATCCTCATGCGTAC 58.844 50.000 0.00 0.00 36.05 3.67
259 260 3.520691 AGGTAGGTATCCTCATGCGTA 57.479 47.619 0.00 0.00 34.61 4.42
260 261 2.383442 AGGTAGGTATCCTCATGCGT 57.617 50.000 0.00 0.00 34.61 5.24
261 262 2.492484 GGTAGGTAGGTATCCTCATGCG 59.508 54.545 0.00 0.00 36.60 4.73
262 263 3.780626 AGGTAGGTAGGTATCCTCATGC 58.219 50.000 0.00 0.00 36.60 4.06
263 264 4.951094 GCTAGGTAGGTAGGTATCCTCATG 59.049 50.000 0.00 0.00 36.60 3.07
264 265 4.324408 CGCTAGGTAGGTAGGTATCCTCAT 60.324 50.000 0.00 0.00 36.60 2.90
265 266 3.008813 CGCTAGGTAGGTAGGTATCCTCA 59.991 52.174 0.00 0.00 36.60 3.86
266 267 3.262915 TCGCTAGGTAGGTAGGTATCCTC 59.737 52.174 0.00 0.00 36.60 3.71
267 268 3.254960 TCGCTAGGTAGGTAGGTATCCT 58.745 50.000 0.00 0.00 38.91 3.24
268 269 3.710209 TCGCTAGGTAGGTAGGTATCC 57.290 52.381 0.00 0.00 0.00 2.59
269 270 5.709164 TCATTTCGCTAGGTAGGTAGGTATC 59.291 44.000 0.00 0.00 0.00 2.24
270 271 5.476254 GTCATTTCGCTAGGTAGGTAGGTAT 59.524 44.000 0.00 0.00 0.00 2.73
271 272 4.823989 GTCATTTCGCTAGGTAGGTAGGTA 59.176 45.833 0.00 0.00 0.00 3.08
272 273 3.635836 GTCATTTCGCTAGGTAGGTAGGT 59.364 47.826 0.00 0.00 0.00 3.08
273 274 3.304525 CGTCATTTCGCTAGGTAGGTAGG 60.305 52.174 0.00 0.00 0.00 3.18
274 275 3.562973 TCGTCATTTCGCTAGGTAGGTAG 59.437 47.826 0.00 0.00 0.00 3.18
275 276 3.544684 TCGTCATTTCGCTAGGTAGGTA 58.455 45.455 0.00 0.00 0.00 3.08
276 277 2.358267 CTCGTCATTTCGCTAGGTAGGT 59.642 50.000 0.00 0.00 0.00 3.08
277 278 2.859032 GCTCGTCATTTCGCTAGGTAGG 60.859 54.545 0.00 0.00 0.00 3.18
278 279 2.033550 AGCTCGTCATTTCGCTAGGTAG 59.966 50.000 0.00 0.00 0.00 3.18
279 280 2.022195 AGCTCGTCATTTCGCTAGGTA 58.978 47.619 0.00 0.00 0.00 3.08
280 281 0.818296 AGCTCGTCATTTCGCTAGGT 59.182 50.000 0.00 0.00 0.00 3.08
281 282 1.590238 CAAGCTCGTCATTTCGCTAGG 59.410 52.381 0.00 0.00 31.48 3.02
282 283 2.263077 ACAAGCTCGTCATTTCGCTAG 58.737 47.619 0.00 0.00 31.48 3.42
283 284 2.363788 ACAAGCTCGTCATTTCGCTA 57.636 45.000 0.00 0.00 31.48 4.26
284 285 1.461127 GAACAAGCTCGTCATTTCGCT 59.539 47.619 0.00 0.00 0.00 4.93
285 286 1.461127 AGAACAAGCTCGTCATTTCGC 59.539 47.619 0.00 0.00 0.00 4.70
286 287 3.430218 AGAAGAACAAGCTCGTCATTTCG 59.570 43.478 0.00 0.00 0.00 3.46
287 288 4.433544 CGAGAAGAACAAGCTCGTCATTTC 60.434 45.833 0.00 0.00 44.59 2.17
288 289 3.430218 CGAGAAGAACAAGCTCGTCATTT 59.570 43.478 0.00 0.00 44.59 2.32
289 290 2.989840 CGAGAAGAACAAGCTCGTCATT 59.010 45.455 0.00 0.00 44.59 2.57
290 291 2.600731 CGAGAAGAACAAGCTCGTCAT 58.399 47.619 0.00 0.00 44.59 3.06
291 292 2.051879 CGAGAAGAACAAGCTCGTCA 57.948 50.000 0.00 0.00 44.59 4.35
295 296 0.320771 TGGCCGAGAAGAACAAGCTC 60.321 55.000 0.00 0.00 0.00 4.09
296 297 0.108585 TTGGCCGAGAAGAACAAGCT 59.891 50.000 0.00 0.00 0.00 3.74
297 298 0.519077 CTTGGCCGAGAAGAACAAGC 59.481 55.000 15.76 0.00 33.12 4.01
298 299 0.519077 GCTTGGCCGAGAAGAACAAG 59.481 55.000 25.25 6.75 40.97 3.16
299 300 0.179032 TGCTTGGCCGAGAAGAACAA 60.179 50.000 25.25 0.00 0.00 2.83
300 301 0.179032 TTGCTTGGCCGAGAAGAACA 60.179 50.000 25.25 8.70 0.00 3.18
301 302 1.131315 GATTGCTTGGCCGAGAAGAAC 59.869 52.381 25.25 5.88 0.00 3.01
302 303 1.453155 GATTGCTTGGCCGAGAAGAA 58.547 50.000 25.25 12.58 0.00 2.52
303 304 0.392998 GGATTGCTTGGCCGAGAAGA 60.393 55.000 25.25 8.48 0.00 2.87
304 305 0.393537 AGGATTGCTTGGCCGAGAAG 60.394 55.000 25.25 10.71 0.00 2.85
305 306 0.677731 CAGGATTGCTTGGCCGAGAA 60.678 55.000 25.25 11.24 0.00 2.87
306 307 1.078214 CAGGATTGCTTGGCCGAGA 60.078 57.895 25.25 3.67 0.00 4.04
307 308 2.768492 GCAGGATTGCTTGGCCGAG 61.768 63.158 16.53 16.53 46.95 4.63
308 309 2.751436 GCAGGATTGCTTGGCCGA 60.751 61.111 0.00 0.00 46.95 5.54
317 318 3.666274 GGATGAGATGAGAGCAGGATTG 58.334 50.000 0.00 0.00 0.00 2.67
318 319 2.299582 CGGATGAGATGAGAGCAGGATT 59.700 50.000 0.00 0.00 0.00 3.01
319 320 1.894466 CGGATGAGATGAGAGCAGGAT 59.106 52.381 0.00 0.00 0.00 3.24
320 321 1.326328 CGGATGAGATGAGAGCAGGA 58.674 55.000 0.00 0.00 0.00 3.86
321 322 0.317799 CCGGATGAGATGAGAGCAGG 59.682 60.000 0.00 0.00 0.00 4.85
322 323 0.319727 GCCGGATGAGATGAGAGCAG 60.320 60.000 5.05 0.00 0.00 4.24
323 324 1.044790 TGCCGGATGAGATGAGAGCA 61.045 55.000 5.05 0.00 0.00 4.26
324 325 0.319727 CTGCCGGATGAGATGAGAGC 60.320 60.000 5.05 0.00 0.00 4.09
325 326 0.319727 GCTGCCGGATGAGATGAGAG 60.320 60.000 5.05 0.00 0.00 3.20
326 327 0.758310 AGCTGCCGGATGAGATGAGA 60.758 55.000 5.05 0.00 0.00 3.27
327 328 0.106335 AAGCTGCCGGATGAGATGAG 59.894 55.000 5.05 0.00 0.00 2.90
328 329 0.105593 GAAGCTGCCGGATGAGATGA 59.894 55.000 5.05 0.00 0.00 2.92
329 330 0.179065 TGAAGCTGCCGGATGAGATG 60.179 55.000 5.05 0.00 0.00 2.90
330 331 0.543277 TTGAAGCTGCCGGATGAGAT 59.457 50.000 5.05 0.00 0.00 2.75
331 332 0.107993 CTTGAAGCTGCCGGATGAGA 60.108 55.000 5.05 0.00 0.00 3.27
332 333 0.392193 ACTTGAAGCTGCCGGATGAG 60.392 55.000 5.05 0.00 0.00 2.90
333 334 0.391661 GACTTGAAGCTGCCGGATGA 60.392 55.000 5.05 0.00 0.00 2.92
334 335 0.674581 TGACTTGAAGCTGCCGGATG 60.675 55.000 5.05 0.00 0.00 3.51
335 336 0.254178 ATGACTTGAAGCTGCCGGAT 59.746 50.000 5.05 0.00 0.00 4.18
336 337 0.674581 CATGACTTGAAGCTGCCGGA 60.675 55.000 5.05 0.00 0.00 5.14
337 338 0.957395 ACATGACTTGAAGCTGCCGG 60.957 55.000 0.00 0.00 0.00 6.13
338 339 0.877071 AACATGACTTGAAGCTGCCG 59.123 50.000 0.00 0.00 0.00 5.69
339 340 1.068055 CCAACATGACTTGAAGCTGCC 60.068 52.381 0.00 0.00 0.00 4.85
340 341 1.610522 ACCAACATGACTTGAAGCTGC 59.389 47.619 0.00 0.00 0.00 5.25
341 342 2.620115 ACACCAACATGACTTGAAGCTG 59.380 45.455 0.00 0.00 0.00 4.24
342 343 2.620115 CACACCAACATGACTTGAAGCT 59.380 45.455 0.00 0.00 0.00 3.74
343 344 2.618241 TCACACCAACATGACTTGAAGC 59.382 45.455 0.00 0.00 0.00 3.86
344 345 3.879295 ACTCACACCAACATGACTTGAAG 59.121 43.478 0.00 0.00 0.00 3.02
345 346 3.884895 ACTCACACCAACATGACTTGAA 58.115 40.909 0.00 0.00 0.00 2.69
346 347 3.558931 ACTCACACCAACATGACTTGA 57.441 42.857 0.00 0.00 0.00 3.02
347 348 3.243168 CCAACTCACACCAACATGACTTG 60.243 47.826 0.00 0.00 0.00 3.16
348 349 2.951642 CCAACTCACACCAACATGACTT 59.048 45.455 0.00 0.00 0.00 3.01
349 350 2.172505 TCCAACTCACACCAACATGACT 59.827 45.455 0.00 0.00 0.00 3.41
350 351 2.571212 TCCAACTCACACCAACATGAC 58.429 47.619 0.00 0.00 0.00 3.06
351 352 3.289407 TTCCAACTCACACCAACATGA 57.711 42.857 0.00 0.00 0.00 3.07
352 353 4.589216 AATTCCAACTCACACCAACATG 57.411 40.909 0.00 0.00 0.00 3.21
433 434 6.720309 TCTAGATCTCATCTCGATCCATCTT 58.280 40.000 0.00 0.00 40.76 2.40
822 948 4.963318 TGGAGATGAACTAGCTATTGGG 57.037 45.455 0.00 0.00 0.00 4.12
1205 1342 5.187772 TCATCAACAAGCAGGTACTCATAGT 59.812 40.000 0.00 0.00 34.60 2.12
1743 1889 1.202475 TGCATAGATAAAGCCGCACGA 60.202 47.619 0.00 0.00 0.00 4.35
2182 2330 9.562408 TGAACAAGGTGTATAAGATACAAACAA 57.438 29.630 0.98 0.00 0.00 2.83
2328 2476 6.636454 AACAGATAATAGGTTCACTGGGAA 57.364 37.500 0.00 0.00 0.00 3.97
2329 2477 6.183360 GCTAACAGATAATAGGTTCACTGGGA 60.183 42.308 0.00 0.00 0.00 4.37
2330 2478 5.992217 GCTAACAGATAATAGGTTCACTGGG 59.008 44.000 0.00 0.00 0.00 4.45
2564 2716 3.915437 ACACGGGATAAAACAGCAAAG 57.085 42.857 0.00 0.00 0.00 2.77
2664 2816 9.939424 ACTTCTAAGACCAATACTAGGATAAGT 57.061 33.333 0.00 0.00 0.00 2.24
2853 3005 7.093992 TGCTTATTTTTAATAAGGGCACACAC 58.906 34.615 16.64 3.32 33.44 3.82
2956 3108 3.688272 GTCTGATGTTCAATGCCATTCG 58.312 45.455 0.00 0.00 0.00 3.34
3213 3366 3.194329 TCATGCACAAAACAAACACTCCA 59.806 39.130 0.00 0.00 0.00 3.86
3248 3401 3.626670 CACGAGGATCTAGTTTCCGTACT 59.373 47.826 8.28 0.00 38.36 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.