Multiple sequence alignment - TraesCS2B01G018100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G018100 chr2B 100.000 5301 0 0 1 5301 8294480 8289180 0.000000e+00 9790.0
1 TraesCS2B01G018100 chr2B 89.504 2258 191 28 455 2702 7824212 7821991 0.000000e+00 2815.0
2 TraesCS2B01G018100 chr2B 90.084 948 86 6 3531 4476 7821251 7820310 0.000000e+00 1223.0
3 TraesCS2B01G018100 chr2B 94.375 160 7 2 2 160 466173845 466173687 1.470000e-60 244.0
4 TraesCS2B01G018100 chr2B 92.857 42 3 0 412 453 9080485 9080526 1.590000e-05 62.1
5 TraesCS2B01G018100 chr2D 89.746 2594 189 36 160 2702 2814150 2816717 0.000000e+00 3245.0
6 TraesCS2B01G018100 chr2D 89.799 2294 177 39 450 2702 2852824 2855101 0.000000e+00 2887.0
7 TraesCS2B01G018100 chr2D 88.284 1084 98 23 3531 4599 2817568 2818637 0.000000e+00 1271.0
8 TraesCS2B01G018100 chr2D 89.444 701 65 9 4599 5292 527465331 527464633 0.000000e+00 876.0
9 TraesCS2B01G018100 chr2D 89.331 703 66 8 4599 5295 401611701 401611002 0.000000e+00 874.0
10 TraesCS2B01G018100 chr2D 90.459 566 49 2 3822 4386 2867547 2868108 0.000000e+00 741.0
11 TraesCS2B01G018100 chr2D 85.197 304 32 8 3531 3833 2855969 2856260 3.100000e-77 300.0
12 TraesCS2B01G018100 chr2D 84.556 259 27 6 2705 2962 2855135 2855381 1.470000e-60 244.0
13 TraesCS2B01G018100 chr2D 94.410 161 6 2 1 160 81455716 81455874 1.470000e-60 244.0
14 TraesCS2B01G018100 chr2D 93.373 166 8 3 1 163 478050556 478050391 5.300000e-60 243.0
15 TraesCS2B01G018100 chr2D 84.507 213 17 12 3325 3532 5908648 5908849 4.190000e-46 196.0
16 TraesCS2B01G018100 chr2D 82.895 228 19 9 3325 3537 163609502 163609280 2.520000e-43 187.0
17 TraesCS2B01G018100 chr2D 84.667 150 19 4 2981 3127 2855477 2855625 4.280000e-31 147.0
18 TraesCS2B01G018100 chr2D 83.333 150 21 4 2981 3127 2817080 2817228 9.260000e-28 135.0
19 TraesCS2B01G018100 chr2D 95.238 42 2 0 412 453 22612574 22612615 3.430000e-07 67.6
20 TraesCS2B01G018100 chr2A 90.404 2053 135 34 670 2680 2795106 2793074 0.000000e+00 2643.0
21 TraesCS2B01G018100 chr2A 85.931 988 106 21 3623 4597 2792350 2791383 0.000000e+00 1024.0
22 TraesCS2B01G018100 chr7D 90.115 698 63 6 4599 5292 435923246 435923941 0.000000e+00 902.0
23 TraesCS2B01G018100 chr7D 88.920 704 66 11 4599 5292 335609610 335610311 0.000000e+00 857.0
24 TraesCS2B01G018100 chr7D 88.873 701 68 10 4600 5292 335597791 335598489 0.000000e+00 854.0
25 TraesCS2B01G018100 chr7D 84.821 224 15 8 3325 3533 430112301 430112082 1.930000e-49 207.0
26 TraesCS2B01G018100 chr7D 82.231 242 23 5 3307 3533 266554100 266554336 1.950000e-44 191.0
27 TraesCS2B01G018100 chr5D 89.758 703 64 7 4599 5295 254932868 254932168 0.000000e+00 893.0
28 TraesCS2B01G018100 chr5D 93.168 161 11 0 1 161 47784061 47783901 2.470000e-58 237.0
29 TraesCS2B01G018100 chr5D 85.652 230 13 5 3325 3539 344531547 344531771 1.920000e-54 224.0
30 TraesCS2B01G018100 chr6D 88.636 704 71 8 4600 5295 252658717 252658015 0.000000e+00 848.0
31 TraesCS2B01G018100 chr6D 88.511 705 72 8 4599 5295 252628797 252628094 0.000000e+00 845.0
32 TraesCS2B01G018100 chr6D 96.053 152 5 1 1 151 168298446 168298295 4.100000e-61 246.0
33 TraesCS2B01G018100 chr4A 87.198 703 82 7 4600 5295 509468878 509468177 0.000000e+00 793.0
34 TraesCS2B01G018100 chr6A 95.484 155 6 1 1 154 14131171 14131017 4.100000e-61 246.0
35 TraesCS2B01G018100 chr5B 95.484 155 6 1 1 154 382313320 382313166 4.100000e-61 246.0
36 TraesCS2B01G018100 chr1D 96.053 152 5 1 1 151 124565168 124565319 4.100000e-61 246.0
37 TraesCS2B01G018100 chr1D 87.391 230 9 12 3325 3538 486707279 486707054 4.100000e-61 246.0
38 TraesCS2B01G018100 chr1D 81.818 110 13 6 3312 3417 229032528 229032634 9.460000e-13 86.1
39 TraesCS2B01G018100 chr1A 87.963 216 15 8 3324 3532 141435170 141434959 1.470000e-60 244.0
40 TraesCS2B01G018100 chr1A 85.408 233 12 8 3317 3533 452450235 452450461 6.910000e-54 222.0
41 TraesCS2B01G018100 chr3B 93.750 160 8 2 1 160 561034569 561034726 6.860000e-59 239.0
42 TraesCS2B01G018100 chr3B 84.793 217 14 5 3331 3532 787991291 787991079 3.240000e-47 200.0
43 TraesCS2B01G018100 chr1B 86.522 230 12 4 3325 3539 455204878 455204653 8.880000e-58 235.0
44 TraesCS2B01G018100 chr3A 86.937 222 10 4 3326 3532 737893402 737893185 1.150000e-56 231.0
45 TraesCS2B01G018100 chr5A 86.547 223 11 4 3325 3532 129611880 129611662 1.490000e-55 228.0
46 TraesCS2B01G018100 chr5A 83.645 214 16 5 3321 3519 493785101 493785310 3.260000e-42 183.0
47 TraesCS2B01G018100 chrUn 84.753 223 15 5 3325 3532 314206897 314207115 6.960000e-49 206.0
48 TraesCS2B01G018100 chr6B 81.702 235 23 5 3321 3539 95486610 95486380 1.520000e-40 178.0
49 TraesCS2B01G018100 chr6B 85.799 169 21 3 3326 3491 369443057 369442889 5.460000e-40 176.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G018100 chr2B 8289180 8294480 5300 True 9790.000000 9790 100.00000 1 5301 1 chr2B.!!$R1 5300
1 TraesCS2B01G018100 chr2B 7820310 7824212 3902 True 2019.000000 2815 89.79400 455 4476 2 chr2B.!!$R3 4021
2 TraesCS2B01G018100 chr2D 2814150 2818637 4487 False 1550.333333 3245 87.12100 160 4599 3 chr2D.!!$F5 4439
3 TraesCS2B01G018100 chr2D 2852824 2856260 3436 False 894.500000 2887 86.05475 450 3833 4 chr2D.!!$F6 3383
4 TraesCS2B01G018100 chr2D 527464633 527465331 698 True 876.000000 876 89.44400 4599 5292 1 chr2D.!!$R4 693
5 TraesCS2B01G018100 chr2D 401611002 401611701 699 True 874.000000 874 89.33100 4599 5295 1 chr2D.!!$R2 696
6 TraesCS2B01G018100 chr2D 2867547 2868108 561 False 741.000000 741 90.45900 3822 4386 1 chr2D.!!$F1 564
7 TraesCS2B01G018100 chr2A 2791383 2795106 3723 True 1833.500000 2643 88.16750 670 4597 2 chr2A.!!$R1 3927
8 TraesCS2B01G018100 chr7D 435923246 435923941 695 False 902.000000 902 90.11500 4599 5292 1 chr7D.!!$F4 693
9 TraesCS2B01G018100 chr7D 335609610 335610311 701 False 857.000000 857 88.92000 4599 5292 1 chr7D.!!$F3 693
10 TraesCS2B01G018100 chr7D 335597791 335598489 698 False 854.000000 854 88.87300 4600 5292 1 chr7D.!!$F2 692
11 TraesCS2B01G018100 chr5D 254932168 254932868 700 True 893.000000 893 89.75800 4599 5295 1 chr5D.!!$R2 696
12 TraesCS2B01G018100 chr6D 252658015 252658717 702 True 848.000000 848 88.63600 4600 5295 1 chr6D.!!$R3 695
13 TraesCS2B01G018100 chr6D 252628094 252628797 703 True 845.000000 845 88.51100 4599 5295 1 chr6D.!!$R2 696
14 TraesCS2B01G018100 chr4A 509468177 509468878 701 True 793.000000 793 87.19800 4600 5295 1 chr4A.!!$R1 695

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
143 144 0.196118 TGGGGTCCTCCTCCTTTTCT 59.804 55.0 0.0 0.0 32.02 2.52 F
225 226 1.086696 TACGTACACCTACTCCACGC 58.913 55.0 0.0 0.0 36.11 5.34 F
1166 1175 0.036732 TCTTCAAGGCACTCCGCAAT 59.963 50.0 0.0 0.0 45.17 3.56 F
2433 2492 0.990282 AGCCCCAGCATACATGAGGT 60.990 55.0 0.0 0.0 43.56 3.85 F
3082 3267 0.036858 GGAGCCGCATAGAGGGATTC 60.037 60.0 0.0 0.0 0.00 2.52 F
3519 3886 0.163788 CGCACGCCTTGTAAACTGAG 59.836 55.0 0.0 0.0 0.00 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1151 1160 0.099436 GCTTATTGCGGAGTGCCTTG 59.901 55.000 0.00 0.00 45.60 3.61 R
1684 1707 1.376609 GGCCCAACAAGGATGTAGCG 61.377 60.000 0.00 0.00 39.40 4.26 R
2990 3175 0.608130 TGCTTCTGCTCCATGTACGT 59.392 50.000 0.00 0.00 40.48 3.57 R
3500 3867 0.163788 CTCAGTTTACAAGGCGTGCG 59.836 55.000 0.00 0.00 0.00 5.34 R
4004 4375 1.128692 CGAAGCTTGTTCCCGCTTTAG 59.871 52.381 2.10 0.00 45.70 1.85 R
5176 5582 0.107456 AAGACACTGTGCAGAGGTGG 59.893 55.000 16.19 6.84 35.53 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.844349 ATTGGATAGGTGTAGCAACAGT 57.156 40.909 0.00 0.00 35.91 3.55
22 23 4.634012 TTGGATAGGTGTAGCAACAGTT 57.366 40.909 0.00 0.00 35.91 3.16
23 24 3.937814 TGGATAGGTGTAGCAACAGTTG 58.062 45.455 9.12 9.12 35.91 3.16
24 25 3.326588 TGGATAGGTGTAGCAACAGTTGT 59.673 43.478 14.88 4.63 35.91 3.32
25 26 4.202419 TGGATAGGTGTAGCAACAGTTGTT 60.202 41.667 14.88 11.40 35.91 2.83
37 38 4.732285 AACAGTTGTTGCTTAGACGATG 57.268 40.909 0.00 0.00 36.80 3.84
38 39 3.067106 ACAGTTGTTGCTTAGACGATGG 58.933 45.455 0.00 0.00 0.00 3.51
39 40 2.076863 AGTTGTTGCTTAGACGATGGC 58.923 47.619 0.00 0.00 0.00 4.40
40 41 2.076863 GTTGTTGCTTAGACGATGGCT 58.923 47.619 0.00 0.00 0.00 4.75
41 42 2.472695 TGTTGCTTAGACGATGGCTT 57.527 45.000 0.00 0.00 0.00 4.35
42 43 2.778299 TGTTGCTTAGACGATGGCTTT 58.222 42.857 0.00 0.00 0.00 3.51
43 44 3.932822 TGTTGCTTAGACGATGGCTTTA 58.067 40.909 0.00 0.00 0.00 1.85
44 45 3.932710 TGTTGCTTAGACGATGGCTTTAG 59.067 43.478 0.00 0.00 0.00 1.85
45 46 3.887621 TGCTTAGACGATGGCTTTAGT 57.112 42.857 0.00 0.00 0.00 2.24
46 47 3.782046 TGCTTAGACGATGGCTTTAGTC 58.218 45.455 0.00 0.00 0.00 2.59
47 48 3.447586 TGCTTAGACGATGGCTTTAGTCT 59.552 43.478 13.79 13.79 44.90 3.24
48 49 4.081642 TGCTTAGACGATGGCTTTAGTCTT 60.082 41.667 14.28 3.94 42.99 3.01
49 50 5.126545 TGCTTAGACGATGGCTTTAGTCTTA 59.873 40.000 14.28 7.63 42.99 2.10
50 51 5.459434 GCTTAGACGATGGCTTTAGTCTTAC 59.541 44.000 14.28 5.13 42.99 2.34
51 52 6.680872 GCTTAGACGATGGCTTTAGTCTTACT 60.681 42.308 14.28 0.00 42.99 2.24
52 53 5.000012 AGACGATGGCTTTAGTCTTACTG 58.000 43.478 0.00 0.00 40.64 2.74
53 54 4.463186 AGACGATGGCTTTAGTCTTACTGT 59.537 41.667 0.00 0.00 40.64 3.55
54 55 5.047235 AGACGATGGCTTTAGTCTTACTGTT 60.047 40.000 0.00 0.00 40.64 3.16
55 56 4.929808 ACGATGGCTTTAGTCTTACTGTTG 59.070 41.667 0.00 0.00 0.00 3.33
56 57 4.929808 CGATGGCTTTAGTCTTACTGTTGT 59.070 41.667 0.00 0.00 0.00 3.32
57 58 6.097356 CGATGGCTTTAGTCTTACTGTTGTA 58.903 40.000 0.00 0.00 0.00 2.41
58 59 6.757010 CGATGGCTTTAGTCTTACTGTTGTAT 59.243 38.462 0.00 0.00 0.00 2.29
59 60 7.254117 CGATGGCTTTAGTCTTACTGTTGTATG 60.254 40.741 0.00 0.00 0.00 2.39
60 61 6.999950 TGGCTTTAGTCTTACTGTTGTATGA 58.000 36.000 0.00 0.00 32.61 2.15
61 62 6.872020 TGGCTTTAGTCTTACTGTTGTATGAC 59.128 38.462 11.70 11.70 45.97 3.06
70 71 8.709646 GTCTTACTGTTGTATGACTTTGTAAGG 58.290 37.037 0.00 0.00 44.06 2.69
71 72 8.426489 TCTTACTGTTGTATGACTTTGTAAGGT 58.574 33.333 0.00 0.00 37.36 3.50
72 73 8.597662 TTACTGTTGTATGACTTTGTAAGGTC 57.402 34.615 0.44 0.44 0.00 3.85
73 74 6.827727 ACTGTTGTATGACTTTGTAAGGTCT 58.172 36.000 8.11 0.00 34.01 3.85
74 75 7.280356 ACTGTTGTATGACTTTGTAAGGTCTT 58.720 34.615 8.11 4.91 34.01 3.01
75 76 7.226720 ACTGTTGTATGACTTTGTAAGGTCTTG 59.773 37.037 8.11 0.00 34.01 3.02
76 77 7.051623 TGTTGTATGACTTTGTAAGGTCTTGT 58.948 34.615 8.11 0.00 34.01 3.16
77 78 7.011950 TGTTGTATGACTTTGTAAGGTCTTGTG 59.988 37.037 8.11 0.00 34.01 3.33
78 79 6.822442 TGTATGACTTTGTAAGGTCTTGTGA 58.178 36.000 8.11 0.00 34.01 3.58
79 80 6.929049 TGTATGACTTTGTAAGGTCTTGTGAG 59.071 38.462 8.11 0.00 34.01 3.51
80 81 5.607939 TGACTTTGTAAGGTCTTGTGAGA 57.392 39.130 8.11 0.00 34.01 3.27
81 82 5.984725 TGACTTTGTAAGGTCTTGTGAGAA 58.015 37.500 8.11 0.00 32.66 2.87
82 83 6.591935 TGACTTTGTAAGGTCTTGTGAGAAT 58.408 36.000 8.11 0.00 32.66 2.40
83 84 7.732025 TGACTTTGTAAGGTCTTGTGAGAATA 58.268 34.615 8.11 0.00 32.66 1.75
84 85 8.208224 TGACTTTGTAAGGTCTTGTGAGAATAA 58.792 33.333 8.11 0.00 32.66 1.40
85 86 9.220767 GACTTTGTAAGGTCTTGTGAGAATAAT 57.779 33.333 0.23 0.00 32.66 1.28
86 87 9.574516 ACTTTGTAAGGTCTTGTGAGAATAATT 57.425 29.630 0.00 0.00 32.66 1.40
98 99 9.736023 CTTGTGAGAATAATTAATAAAGTGGCC 57.264 33.333 0.00 0.00 0.00 5.36
99 100 7.925993 TGTGAGAATAATTAATAAAGTGGCCG 58.074 34.615 0.00 0.00 0.00 6.13
100 101 6.856426 GTGAGAATAATTAATAAAGTGGCCGC 59.144 38.462 8.71 8.71 0.00 6.53
101 102 6.544197 TGAGAATAATTAATAAAGTGGCCGCA 59.456 34.615 20.59 0.00 0.00 5.69
102 103 7.230510 TGAGAATAATTAATAAAGTGGCCGCAT 59.769 33.333 20.59 2.72 0.00 4.73
103 104 7.370383 AGAATAATTAATAAAGTGGCCGCATG 58.630 34.615 20.59 0.00 0.00 4.06
104 105 2.861462 TTAATAAAGTGGCCGCATGC 57.139 45.000 20.59 7.91 40.16 4.06
105 106 1.756430 TAATAAAGTGGCCGCATGCA 58.244 45.000 20.59 0.22 43.89 3.96
106 107 1.113788 AATAAAGTGGCCGCATGCAT 58.886 45.000 20.59 0.00 43.89 3.96
107 108 0.670162 ATAAAGTGGCCGCATGCATC 59.330 50.000 20.59 8.10 43.89 3.91
108 109 1.713937 TAAAGTGGCCGCATGCATCG 61.714 55.000 20.59 5.23 43.89 3.84
115 116 2.976350 CGCATGCATCGCCCAGAT 60.976 61.111 19.57 0.00 41.01 2.90
122 123 4.872357 ATCGCCCAGATGCAGAAG 57.128 55.556 0.00 0.00 38.36 2.85
123 124 1.525535 ATCGCCCAGATGCAGAAGC 60.526 57.895 0.00 0.00 38.36 3.86
124 125 1.980784 ATCGCCCAGATGCAGAAGCT 61.981 55.000 0.00 0.00 42.74 3.74
125 126 2.470362 CGCCCAGATGCAGAAGCTG 61.470 63.158 0.00 0.00 42.74 4.24
126 127 2.119655 GCCCAGATGCAGAAGCTGG 61.120 63.158 5.58 5.58 46.83 4.85
127 128 4.237445 CCAGATGCAGAAGCTGGG 57.763 61.111 4.48 0.00 44.24 4.45
128 129 1.453379 CCAGATGCAGAAGCTGGGG 60.453 63.158 4.48 0.00 44.24 4.96
129 130 1.302285 CAGATGCAGAAGCTGGGGT 59.698 57.895 0.00 0.00 42.74 4.95
130 131 0.747283 CAGATGCAGAAGCTGGGGTC 60.747 60.000 0.00 0.00 42.74 4.46
131 132 1.452833 GATGCAGAAGCTGGGGTCC 60.453 63.158 0.00 0.00 42.74 4.46
132 133 1.919600 GATGCAGAAGCTGGGGTCCT 61.920 60.000 0.00 0.00 42.74 3.85
133 134 1.919600 ATGCAGAAGCTGGGGTCCTC 61.920 60.000 0.00 0.00 42.74 3.71
134 135 2.993853 CAGAAGCTGGGGTCCTCC 59.006 66.667 0.00 0.00 0.00 4.30
135 136 1.614824 CAGAAGCTGGGGTCCTCCT 60.615 63.158 0.00 0.00 35.33 3.69
136 137 1.306568 AGAAGCTGGGGTCCTCCTC 60.307 63.158 0.00 0.00 35.33 3.71
137 138 2.285743 AAGCTGGGGTCCTCCTCC 60.286 66.667 0.00 0.00 32.02 4.30
138 139 2.831394 GAAGCTGGGGTCCTCCTCCT 62.831 65.000 0.00 0.00 32.02 3.69
139 140 2.285743 GCTGGGGTCCTCCTCCTT 60.286 66.667 0.00 0.00 32.02 3.36
140 141 1.925972 GCTGGGGTCCTCCTCCTTT 60.926 63.158 0.00 0.00 32.02 3.11
141 142 1.501654 GCTGGGGTCCTCCTCCTTTT 61.502 60.000 0.00 0.00 32.02 2.27
142 143 0.621082 CTGGGGTCCTCCTCCTTTTC 59.379 60.000 0.00 0.00 32.02 2.29
143 144 0.196118 TGGGGTCCTCCTCCTTTTCT 59.804 55.000 0.00 0.00 32.02 2.52
144 145 1.439543 TGGGGTCCTCCTCCTTTTCTA 59.560 52.381 0.00 0.00 32.02 2.10
145 146 2.157911 TGGGGTCCTCCTCCTTTTCTAA 60.158 50.000 0.00 0.00 32.02 2.10
146 147 2.917600 GGGGTCCTCCTCCTTTTCTAAA 59.082 50.000 0.00 0.00 35.33 1.85
147 148 3.332783 GGGGTCCTCCTCCTTTTCTAAAA 59.667 47.826 0.00 0.00 35.33 1.52
148 149 4.202641 GGGGTCCTCCTCCTTTTCTAAAAA 60.203 45.833 0.00 0.00 35.33 1.94
187 188 1.969862 GCAGCCAGCCTTCATTTGT 59.030 52.632 0.00 0.00 37.23 2.83
189 190 1.542492 CAGCCAGCCTTCATTTGTCT 58.458 50.000 0.00 0.00 0.00 3.41
197 198 3.153919 GCCTTCATTTGTCTTGGTGGTA 58.846 45.455 0.00 0.00 0.00 3.25
225 226 1.086696 TACGTACACCTACTCCACGC 58.913 55.000 0.00 0.00 36.11 5.34
318 319 9.105844 AGGTGGCATGATATCTAAAATAGTACT 57.894 33.333 0.00 0.00 0.00 2.73
319 320 9.726438 GGTGGCATGATATCTAAAATAGTACTT 57.274 33.333 0.00 0.00 0.00 2.24
350 351 6.648879 AGCAAAATAAGTGGCTCAACTTTA 57.351 33.333 5.52 0.00 40.77 1.85
422 423 3.788227 AAGACAACCCTATCTGTTGCA 57.212 42.857 3.23 0.00 45.42 4.08
429 430 2.578021 ACCCTATCTGTTGCATTCACCT 59.422 45.455 0.00 0.00 0.00 4.00
435 436 4.558226 TCTGTTGCATTCACCTCTACAT 57.442 40.909 0.00 0.00 0.00 2.29
498 499 3.092301 TCTCCAGCGATCTTTGAGAGAA 58.908 45.455 0.00 0.00 38.06 2.87
500 501 2.562738 TCCAGCGATCTTTGAGAGAACA 59.437 45.455 0.00 0.00 38.06 3.18
511 512 1.973515 TGAGAGAACATGGTCTGCAGT 59.026 47.619 20.40 0.00 0.00 4.40
512 513 2.289257 TGAGAGAACATGGTCTGCAGTG 60.289 50.000 20.40 7.08 0.00 3.66
536 537 3.924686 TCTTTGAAAGAGAATACGGCGAC 59.075 43.478 16.62 1.68 32.71 5.19
636 637 5.927281 AAGAGGCATGCACAGAATAAATT 57.073 34.783 21.36 0.00 0.00 1.82
667 672 4.251543 TGATTTGAACTCTAGCGTGTCA 57.748 40.909 0.00 0.00 0.00 3.58
804 811 3.168035 TGTGGGCATTGTAATCTGGTT 57.832 42.857 0.00 0.00 0.00 3.67
843 850 3.394719 TGCAAAGTCGTACTTGTGCATA 58.605 40.909 19.90 0.00 41.98 3.14
860 867 4.452455 GTGCATATTTACTAGCCGAGCATT 59.548 41.667 0.00 0.00 0.00 3.56
906 914 6.585416 TGAATATATTTGTGCTGCTCTCAGA 58.415 36.000 0.00 0.00 42.95 3.27
982 991 3.653164 TCATAGCCATAGACCCAGTGAA 58.347 45.455 0.00 0.00 0.00 3.18
988 997 3.065371 GCCATAGACCCAGTGAAAAATCG 59.935 47.826 0.00 0.00 0.00 3.34
1110 1119 2.930040 CCTCAACTACAAGCCATGTACG 59.070 50.000 0.00 0.00 43.63 3.67
1138 1147 2.571653 CAGGTAAGAGTTCCATCCCACA 59.428 50.000 0.00 0.00 0.00 4.17
1151 1160 7.721399 AGTTCCATCCCACATATGTATTTCTTC 59.279 37.037 8.32 0.00 0.00 2.87
1166 1175 0.036732 TCTTCAAGGCACTCCGCAAT 59.963 50.000 0.00 0.00 45.17 3.56
1237 1250 2.905996 ATGGAGGGCACGGCTGAAA 61.906 57.895 0.00 0.00 0.00 2.69
1238 1251 2.044946 GGAGGGCACGGCTGAAAT 60.045 61.111 0.00 0.00 0.00 2.17
1245 1258 2.734606 GGGCACGGCTGAAATTAAAAAC 59.265 45.455 0.00 0.00 0.00 2.43
1278 1291 5.688807 AGGCAAATCATAATAGACACTGCT 58.311 37.500 0.00 0.00 0.00 4.24
1280 1293 6.933521 AGGCAAATCATAATAGACACTGCTAG 59.066 38.462 0.00 0.00 0.00 3.42
1392 1405 6.455647 ACTGTTGTGTGATATATACGATGGG 58.544 40.000 0.00 0.00 0.00 4.00
1501 1517 6.453926 ACACTTTTACGGGTAAATGTTGTT 57.546 33.333 15.87 5.60 39.70 2.83
1569 1585 7.961325 ATTTTAACTCGTGCAATGGATTTTT 57.039 28.000 0.00 0.00 0.00 1.94
1684 1707 7.542025 AGAATGGAAATATTGAAAGCACTGAC 58.458 34.615 0.00 0.00 0.00 3.51
1717 1740 2.182842 GGGCCTCTACAATGCTGCG 61.183 63.158 0.84 0.00 0.00 5.18
1862 1885 1.003696 CTCCACTTTTCAGGGGGACTC 59.996 57.143 0.00 0.00 45.14 3.36
1876 1899 2.135933 GGGACTCACAGAGTTGAAACG 58.864 52.381 0.70 0.00 43.53 3.60
1900 1923 1.135546 CGCTACATCTCGGCCTATGAG 60.136 57.143 14.44 8.00 34.72 2.90
1945 1968 6.434028 AGACCATAATTGAGTTTGCAAAGCTA 59.566 34.615 13.26 5.39 37.57 3.32
2119 2144 5.416083 ACGGATTTGACATCGAAACTCATA 58.584 37.500 0.00 0.00 0.00 2.15
2226 2251 5.798015 TCGTGCTAACAAAACTGTTTACA 57.202 34.783 6.16 0.00 33.59 2.41
2294 2320 6.318648 ACAGAAGAAAGCAACATGTTCACTAA 59.681 34.615 8.48 0.00 0.00 2.24
2320 2346 2.979814 AAACAGGTTGACTTTTGCCC 57.020 45.000 0.00 0.00 0.00 5.36
2332 2387 3.606687 ACTTTTGCCCCGATACTTACTG 58.393 45.455 0.00 0.00 0.00 2.74
2345 2400 9.273016 CCCGATACTTACTGATTTTAATCACAT 57.727 33.333 1.12 0.00 40.32 3.21
2396 2455 3.769300 GGCTTGAAAACAATAGGTGGGAT 59.231 43.478 0.00 0.00 0.00 3.85
2433 2492 0.990282 AGCCCCAGCATACATGAGGT 60.990 55.000 0.00 0.00 43.56 3.85
2451 2510 4.903049 TGAGGTCTTTCTACAAGGGTACAA 59.097 41.667 0.00 0.00 0.00 2.41
2480 2539 7.284034 GCTTCCATAAATCAGATTGAAGAGGAA 59.716 37.037 18.65 14.29 31.66 3.36
2571 2631 9.769093 CTGGTGTAGTTAATTAAAGTGTTATGC 57.231 33.333 0.00 0.00 0.00 3.14
2572 2632 9.509956 TGGTGTAGTTAATTAAAGTGTTATGCT 57.490 29.630 0.00 0.00 0.00 3.79
2619 2679 8.662781 TCCACAATTACAATCTAGCTATCAAC 57.337 34.615 0.00 0.00 0.00 3.18
2662 2733 3.540314 ATGTTTCCAGCAAGCACAAAA 57.460 38.095 0.00 0.00 0.00 2.44
2663 2734 2.615869 TGTTTCCAGCAAGCACAAAAC 58.384 42.857 0.00 2.57 0.00 2.43
2664 2735 1.587946 GTTTCCAGCAAGCACAAAACG 59.412 47.619 0.00 0.00 0.00 3.60
2702 2773 7.507616 TGGTGGTTATTGATGGGGAAATAATAC 59.492 37.037 0.00 0.00 0.00 1.89
2703 2774 7.308951 GGTGGTTATTGATGGGGAAATAATACG 60.309 40.741 0.00 0.00 0.00 3.06
2729 2831 2.505819 CTCCACTTAGGGTGCATACCTT 59.494 50.000 16.80 0.72 46.66 3.50
2730 2832 2.238646 TCCACTTAGGGTGCATACCTTG 59.761 50.000 16.80 12.70 46.66 3.61
2740 2842 1.247567 GCATACCTTGTGCACCACTT 58.752 50.000 15.69 0.00 42.08 3.16
2756 2858 3.875134 ACCACTTAACTCAAACCACTTCG 59.125 43.478 0.00 0.00 0.00 3.79
2763 2865 3.013921 ACTCAAACCACTTCGCAAAAGA 58.986 40.909 3.02 0.00 0.00 2.52
2774 2876 6.955407 CCACTTCGCAAAAGAAAAAGAAAAAG 59.045 34.615 3.02 0.00 0.00 2.27
2782 2884 9.398170 GCAAAAGAAAAAGAAAAAGAAAAAGCT 57.602 25.926 0.00 0.00 0.00 3.74
2805 2907 1.064389 CCCTTTCCTCCTCATTCCCAC 60.064 57.143 0.00 0.00 0.00 4.61
2846 2948 3.844640 ACAACACCCTGGCTCTTTATTT 58.155 40.909 0.00 0.00 0.00 1.40
2868 2970 3.378472 AATGACATGCGGCCCCCAT 62.378 57.895 0.00 0.00 0.00 4.00
2880 2982 1.869824 GCCCCCATAAACCCACTGGA 61.870 60.000 0.00 0.00 34.81 3.86
2883 2985 1.076350 CCCCATAAACCCACTGGACAA 59.924 52.381 0.00 0.00 34.81 3.18
2886 2988 4.570933 CCCCATAAACCCACTGGACAATTA 60.571 45.833 0.00 0.00 34.81 1.40
2889 2991 6.156083 CCCATAAACCCACTGGACAATTATTT 59.844 38.462 0.00 0.00 34.81 1.40
2943 3050 1.278127 CATAGTCCCAACGTGTCCCTT 59.722 52.381 0.00 0.00 0.00 3.95
2974 3088 1.307778 TTGGGGCCAGCTAGATCCA 60.308 57.895 4.39 0.00 0.00 3.41
2990 3175 4.460263 AGATCCAAACAACTGTAGCAACA 58.540 39.130 0.00 0.00 0.00 3.33
2995 3180 4.268522 CAAACAACTGTAGCAACACGTAC 58.731 43.478 0.00 0.00 0.00 3.67
2996 3181 3.167921 ACAACTGTAGCAACACGTACA 57.832 42.857 0.00 0.00 0.00 2.90
2997 3182 3.724374 ACAACTGTAGCAACACGTACAT 58.276 40.909 0.00 0.00 0.00 2.29
3044 3229 0.606401 AGAGATGTTGCCAACCACCG 60.606 55.000 4.90 0.00 0.00 4.94
3045 3230 2.200170 GAGATGTTGCCAACCACCGC 62.200 60.000 4.90 0.00 0.00 5.68
3070 3255 0.729690 GATGTCTCTTTTGGAGCCGC 59.270 55.000 0.00 0.00 41.60 6.53
3082 3267 0.036858 GGAGCCGCATAGAGGGATTC 60.037 60.000 0.00 0.00 0.00 2.52
3091 3276 4.758674 CGCATAGAGGGATTCATGTTTCAT 59.241 41.667 0.00 0.00 0.00 2.57
3097 3283 5.424252 AGAGGGATTCATGTTTCATTGCAAT 59.576 36.000 5.99 5.99 0.00 3.56
3099 3285 6.110707 AGGGATTCATGTTTCATTGCAATTC 58.889 36.000 9.83 0.39 0.00 2.17
3110 3296 7.280428 TGTTTCATTGCAATTCTTGAATGTTGT 59.720 29.630 9.83 0.00 33.68 3.32
3112 3298 9.491675 TTTCATTGCAATTCTTGAATGTTGTAT 57.508 25.926 9.83 0.00 33.68 2.29
3179 3454 5.429681 TGCATGTACCCATAAGTTACACT 57.570 39.130 0.00 0.00 0.00 3.55
3269 3636 7.805071 GCTTGCAACAAATATATGTAGGTCATC 59.195 37.037 0.00 0.00 37.91 2.92
3298 3665 9.499479 TCACATTTTTGTTAAAATATGGTGCAT 57.501 25.926 0.00 0.00 40.97 3.96
3299 3666 9.544314 CACATTTTTGTTAAAATATGGTGCATG 57.456 29.630 0.00 0.00 40.97 4.06
3332 3699 8.753497 AAATTTAGGATTCAACATACTCCCTC 57.247 34.615 0.00 0.00 0.00 4.30
3333 3700 5.888982 TTAGGATTCAACATACTCCCTCC 57.111 43.478 0.00 0.00 0.00 4.30
3334 3701 3.736094 AGGATTCAACATACTCCCTCCA 58.264 45.455 0.00 0.00 0.00 3.86
3335 3702 4.310740 AGGATTCAACATACTCCCTCCAT 58.689 43.478 0.00 0.00 0.00 3.41
3336 3703 4.728860 AGGATTCAACATACTCCCTCCATT 59.271 41.667 0.00 0.00 0.00 3.16
3337 3704 5.194537 AGGATTCAACATACTCCCTCCATTT 59.805 40.000 0.00 0.00 0.00 2.32
3338 3705 5.532779 GGATTCAACATACTCCCTCCATTTC 59.467 44.000 0.00 0.00 0.00 2.17
3339 3706 5.512942 TTCAACATACTCCCTCCATTTCA 57.487 39.130 0.00 0.00 0.00 2.69
3340 3707 5.102953 TCAACATACTCCCTCCATTTCAG 57.897 43.478 0.00 0.00 0.00 3.02
3341 3708 4.536090 TCAACATACTCCCTCCATTTCAGT 59.464 41.667 0.00 0.00 0.00 3.41
3342 3709 5.014123 TCAACATACTCCCTCCATTTCAGTT 59.986 40.000 0.00 0.00 0.00 3.16
3343 3710 5.520748 ACATACTCCCTCCATTTCAGTTT 57.479 39.130 0.00 0.00 0.00 2.66
3344 3711 6.636454 ACATACTCCCTCCATTTCAGTTTA 57.364 37.500 0.00 0.00 0.00 2.01
3345 3712 6.415573 ACATACTCCCTCCATTTCAGTTTAC 58.584 40.000 0.00 0.00 0.00 2.01
3346 3713 4.993705 ACTCCCTCCATTTCAGTTTACA 57.006 40.909 0.00 0.00 0.00 2.41
3347 3714 5.319043 ACTCCCTCCATTTCAGTTTACAA 57.681 39.130 0.00 0.00 0.00 2.41
3348 3715 5.316987 ACTCCCTCCATTTCAGTTTACAAG 58.683 41.667 0.00 0.00 0.00 3.16
3349 3716 4.662278 TCCCTCCATTTCAGTTTACAAGG 58.338 43.478 0.00 0.00 0.00 3.61
3350 3717 3.193479 CCCTCCATTTCAGTTTACAAGGC 59.807 47.826 0.00 0.00 0.00 4.35
3351 3718 3.119849 CCTCCATTTCAGTTTACAAGGCG 60.120 47.826 0.00 0.00 0.00 5.52
3352 3719 3.482436 TCCATTTCAGTTTACAAGGCGT 58.518 40.909 0.00 0.00 0.00 5.68
3353 3720 3.252215 TCCATTTCAGTTTACAAGGCGTG 59.748 43.478 0.00 0.00 0.00 5.34
3354 3721 2.766970 TTTCAGTTTACAAGGCGTGC 57.233 45.000 0.00 0.00 0.00 5.34
3355 3722 0.584396 TTCAGTTTACAAGGCGTGCG 59.416 50.000 0.00 0.00 0.00 5.34
3356 3723 1.440353 CAGTTTACAAGGCGTGCGC 60.440 57.895 8.17 8.17 41.06 6.09
3357 3724 2.498887 GTTTACAAGGCGTGCGCG 60.499 61.111 16.86 16.86 43.06 6.86
3358 3725 2.968156 TTTACAAGGCGTGCGCGT 60.968 55.556 22.18 8.25 43.06 6.01
3359 3726 1.664017 TTTACAAGGCGTGCGCGTA 60.664 52.632 22.18 0.00 43.06 4.42
3360 3727 1.888958 TTTACAAGGCGTGCGCGTAC 61.889 55.000 22.18 17.94 43.06 3.67
3367 3734 4.564116 CGTGCGCGTACCCCTAGG 62.564 72.222 21.71 0.06 40.04 3.02
3381 3748 4.937201 CCCCTAGGTTGCCAATTTTATC 57.063 45.455 8.29 0.00 0.00 1.75
3382 3749 4.285863 CCCCTAGGTTGCCAATTTTATCA 58.714 43.478 8.29 0.00 0.00 2.15
3383 3750 4.099419 CCCCTAGGTTGCCAATTTTATCAC 59.901 45.833 8.29 0.00 0.00 3.06
3384 3751 4.099419 CCCTAGGTTGCCAATTTTATCACC 59.901 45.833 8.29 0.00 0.00 4.02
3385 3752 3.866883 AGGTTGCCAATTTTATCACCG 57.133 42.857 0.00 0.00 0.00 4.94
3386 3753 3.161866 AGGTTGCCAATTTTATCACCGT 58.838 40.909 0.00 0.00 0.00 4.83
3387 3754 4.337145 AGGTTGCCAATTTTATCACCGTA 58.663 39.130 0.00 0.00 0.00 4.02
3388 3755 4.767928 AGGTTGCCAATTTTATCACCGTAA 59.232 37.500 0.00 0.00 0.00 3.18
3389 3756 5.420739 AGGTTGCCAATTTTATCACCGTAAT 59.579 36.000 0.00 0.00 0.00 1.89
3390 3757 6.603997 AGGTTGCCAATTTTATCACCGTAATA 59.396 34.615 0.00 0.00 0.00 0.98
3391 3758 7.286775 AGGTTGCCAATTTTATCACCGTAATAT 59.713 33.333 0.00 0.00 0.00 1.28
3392 3759 8.569641 GGTTGCCAATTTTATCACCGTAATATA 58.430 33.333 0.00 0.00 0.00 0.86
3393 3760 9.953697 GTTGCCAATTTTATCACCGTAATATAA 57.046 29.630 0.00 0.00 0.00 0.98
3394 3761 9.953697 TTGCCAATTTTATCACCGTAATATAAC 57.046 29.630 0.00 0.00 0.00 1.89
3395 3762 9.344772 TGCCAATTTTATCACCGTAATATAACT 57.655 29.630 0.00 0.00 0.00 2.24
3437 3804 8.786826 ATACCGTTTGAAAATAGAACATCTGA 57.213 30.769 0.00 0.00 0.00 3.27
3438 3805 7.504924 ACCGTTTGAAAATAGAACATCTGAA 57.495 32.000 0.00 0.00 0.00 3.02
3439 3806 7.584987 ACCGTTTGAAAATAGAACATCTGAAG 58.415 34.615 0.00 0.00 0.00 3.02
3440 3807 7.228706 ACCGTTTGAAAATAGAACATCTGAAGT 59.771 33.333 0.00 0.00 0.00 3.01
3441 3808 8.076178 CCGTTTGAAAATAGAACATCTGAAGTT 58.924 33.333 0.00 0.00 0.00 2.66
3442 3809 9.450807 CGTTTGAAAATAGAACATCTGAAGTTT 57.549 29.630 0.00 0.00 0.00 2.66
3479 3846 8.335532 TGACTTCTATTAGGTTGGTCAAAATG 57.664 34.615 0.00 0.00 30.81 2.32
3480 3847 8.160765 TGACTTCTATTAGGTTGGTCAAAATGA 58.839 33.333 0.00 0.00 30.81 2.57
3481 3848 8.336801 ACTTCTATTAGGTTGGTCAAAATGAC 57.663 34.615 1.88 1.88 46.23 3.06
3491 3858 3.604875 GTCAAAATGACGACCTAGGGA 57.395 47.619 14.81 0.00 37.67 4.20
3492 3859 4.138487 GTCAAAATGACGACCTAGGGAT 57.862 45.455 14.81 0.00 37.67 3.85
3493 3860 5.272283 GTCAAAATGACGACCTAGGGATA 57.728 43.478 14.81 0.00 37.67 2.59
3494 3861 5.290386 GTCAAAATGACGACCTAGGGATAG 58.710 45.833 14.81 3.63 37.67 2.08
3495 3862 4.344102 TCAAAATGACGACCTAGGGATAGG 59.656 45.833 14.81 0.00 42.86 2.57
3496 3863 1.926108 ATGACGACCTAGGGATAGGC 58.074 55.000 14.81 3.80 40.90 3.93
3497 3864 0.178970 TGACGACCTAGGGATAGGCC 60.179 60.000 14.81 0.00 40.90 5.19
3498 3865 1.228490 ACGACCTAGGGATAGGCCG 60.228 63.158 14.81 8.25 46.43 6.13
3499 3866 1.977544 CGACCTAGGGATAGGCCGG 60.978 68.421 14.81 0.00 39.06 6.13
3500 3867 2.203803 ACCTAGGGATAGGCCGGC 60.204 66.667 21.18 21.18 40.90 6.13
3501 3868 3.382832 CCTAGGGATAGGCCGGCG 61.383 72.222 22.54 0.00 37.63 6.46
3502 3869 4.070552 CTAGGGATAGGCCGGCGC 62.071 72.222 22.54 13.90 37.63 6.53
3503 3870 4.926162 TAGGGATAGGCCGGCGCA 62.926 66.667 22.54 11.20 37.63 6.09
3516 3883 2.943653 GCGCACGCCTTGTAAACT 59.056 55.556 0.30 0.00 34.56 2.66
3517 3884 1.440353 GCGCACGCCTTGTAAACTG 60.440 57.895 0.30 0.00 34.56 3.16
3518 3885 1.837538 GCGCACGCCTTGTAAACTGA 61.838 55.000 0.30 0.00 34.56 3.41
3519 3886 0.163788 CGCACGCCTTGTAAACTGAG 59.836 55.000 0.00 0.00 0.00 3.35
3520 3887 1.508632 GCACGCCTTGTAAACTGAGA 58.491 50.000 0.00 0.00 0.00 3.27
3521 3888 1.461127 GCACGCCTTGTAAACTGAGAG 59.539 52.381 0.00 0.00 0.00 3.20
3522 3889 2.866460 GCACGCCTTGTAAACTGAGAGA 60.866 50.000 0.00 0.00 0.00 3.10
3523 3890 2.989840 CACGCCTTGTAAACTGAGAGAG 59.010 50.000 0.00 0.00 0.00 3.20
3524 3891 2.891580 ACGCCTTGTAAACTGAGAGAGA 59.108 45.455 0.00 0.00 0.00 3.10
3525 3892 3.057174 ACGCCTTGTAAACTGAGAGAGAG 60.057 47.826 0.00 0.00 0.00 3.20
3526 3893 3.674682 CGCCTTGTAAACTGAGAGAGAGG 60.675 52.174 0.00 0.00 0.00 3.69
3527 3894 3.368948 GCCTTGTAAACTGAGAGAGAGGG 60.369 52.174 0.00 0.00 0.00 4.30
3528 3895 4.090090 CCTTGTAAACTGAGAGAGAGGGA 58.910 47.826 0.00 0.00 0.00 4.20
3529 3896 4.159506 CCTTGTAAACTGAGAGAGAGGGAG 59.840 50.000 0.00 0.00 0.00 4.30
3530 3897 4.390129 TGTAAACTGAGAGAGAGGGAGT 57.610 45.455 0.00 0.00 0.00 3.85
3531 3898 5.516059 TGTAAACTGAGAGAGAGGGAGTA 57.484 43.478 0.00 0.00 0.00 2.59
3532 3899 5.888901 TGTAAACTGAGAGAGAGGGAGTAA 58.111 41.667 0.00 0.00 0.00 2.24
3533 3900 5.946972 TGTAAACTGAGAGAGAGGGAGTAAG 59.053 44.000 0.00 0.00 0.00 2.34
3569 3936 4.060205 GTTGTGGTATCAACTAACGTGGT 58.940 43.478 0.00 0.00 42.76 4.16
3658 4026 8.743085 ACATGCTGAGATTAGATTTTGTATGT 57.257 30.769 0.00 0.00 0.00 2.29
3713 4081 0.322816 ATGCTGAGGTGAAATGGCGT 60.323 50.000 0.00 0.00 0.00 5.68
3789 4157 7.254117 CGCCTAGCACTATATGTATGCAAATAC 60.254 40.741 0.00 0.00 41.97 1.89
3818 4186 8.660295 ACATTGCATTCATATTAATGGGAGAT 57.340 30.769 10.80 0.00 37.34 2.75
3819 4187 8.528643 ACATTGCATTCATATTAATGGGAGATG 58.471 33.333 10.80 0.00 37.34 2.90
3887 4255 3.056678 TCATCAAAGCCGTTTGCATCATT 60.057 39.130 0.00 0.00 42.55 2.57
3917 4285 5.951148 TGTTATGAATGACATTGTGTCCCAT 59.049 36.000 5.14 4.41 46.40 4.00
3930 4298 7.068593 ACATTGTGTCCCATGAGGTAAATAATG 59.931 37.037 0.00 7.18 36.75 1.90
4099 4471 2.824341 AGAGGAGGCAAATGAAAAGCTG 59.176 45.455 0.00 0.00 0.00 4.24
4102 4474 3.257624 AGGAGGCAAATGAAAAGCTGAAG 59.742 43.478 0.00 0.00 0.00 3.02
4139 4511 2.847441 CATGGATGGACATCTGTGAGG 58.153 52.381 11.67 0.00 37.92 3.86
4147 4519 1.139654 GACATCTGTGAGGGCTGCATA 59.860 52.381 0.50 0.00 0.00 3.14
4207 4579 1.374125 CAATCTCGCACGGGTGACA 60.374 57.895 0.00 0.00 0.00 3.58
4444 4824 4.987408 TGCATTGGTCGATGATTGAATT 57.013 36.364 2.55 0.00 0.00 2.17
4451 4831 4.398673 TGGTCGATGATTGAATTCAATGCA 59.601 37.500 32.89 27.33 45.72 3.96
4465 4845 7.930325 TGAATTCAATGCATGTAAGAACCAAAA 59.070 29.630 5.45 0.00 0.00 2.44
4466 4846 7.656707 ATTCAATGCATGTAAGAACCAAAAC 57.343 32.000 0.00 0.00 0.00 2.43
4471 4851 8.986847 CAATGCATGTAAGAACCAAAACAATTA 58.013 29.630 0.00 0.00 0.00 1.40
4504 4884 9.687717 GTTTTCAAATAAATGTTGTGTTGTGAG 57.312 29.630 0.00 0.00 0.00 3.51
4510 4890 9.528018 AAATAAATGTTGTGTTGTGAGTTAAGG 57.472 29.630 0.00 0.00 0.00 2.69
4517 4897 5.004448 TGTGTTGTGAGTTAAGGTTTGTGA 58.996 37.500 0.00 0.00 0.00 3.58
4523 4903 5.104693 TGTGAGTTAAGGTTTGTGAGAAGGA 60.105 40.000 0.00 0.00 0.00 3.36
4524 4904 5.236695 GTGAGTTAAGGTTTGTGAGAAGGAC 59.763 44.000 0.00 0.00 0.00 3.85
4525 4905 5.104693 TGAGTTAAGGTTTGTGAGAAGGACA 60.105 40.000 0.00 0.00 0.00 4.02
4589 4977 9.492973 CTTGAAACAAGGATAAATTTGGAATGT 57.507 29.630 0.00 0.00 0.00 2.71
4608 4996 3.000041 TGTATGTGTGATTGTTCGAGGC 59.000 45.455 0.00 0.00 0.00 4.70
4622 5010 0.929824 CGAGGCGTTTTTGTGCACTG 60.930 55.000 19.41 2.15 0.00 3.66
4677 5069 7.045416 TGAGTTTTCACGCAGGTTATACATAT 58.955 34.615 0.00 0.00 0.00 1.78
4735 5127 2.328989 GCACATGCGCGCACATAT 59.671 55.556 39.05 19.06 0.00 1.78
4738 5130 0.248175 CACATGCGCGCACATATTGT 60.248 50.000 39.05 31.83 0.00 2.71
4739 5131 1.004079 CACATGCGCGCACATATTGTA 60.004 47.619 39.05 10.81 0.00 2.41
4740 5132 1.003972 ACATGCGCGCACATATTGTAC 60.004 47.619 39.05 0.00 0.00 2.90
4784 5177 5.645201 TCATGGTGCAGACTATATAGAGGT 58.355 41.667 16.79 0.00 0.00 3.85
4868 5261 2.942376 TGAAGGCGGCAATATGTACAAG 59.058 45.455 13.08 0.00 0.00 3.16
4872 5265 2.294074 GCGGCAATATGTACAAGGGAA 58.706 47.619 0.00 0.00 0.00 3.97
4873 5266 2.290641 GCGGCAATATGTACAAGGGAAG 59.709 50.000 0.00 0.00 0.00 3.46
4897 5292 5.886960 ATATACCTCGGTTATACGTGACC 57.113 43.478 0.00 2.69 34.94 4.02
4929 5326 2.353323 GGACCCCGCAAGTAAAAGTAG 58.647 52.381 0.00 0.00 0.00 2.57
4936 5333 5.239963 CCCCGCAAGTAAAAGTAGAAAAGAA 59.760 40.000 0.00 0.00 0.00 2.52
4975 5372 9.489084 AAGCCATCATTTTATTGATTGATCATG 57.511 29.630 0.00 0.00 36.56 3.07
5007 5405 6.173339 TCACTGGGACTAATCAATCTTGTTC 58.827 40.000 0.00 0.00 0.00 3.18
5019 5417 4.021456 TCAATCTTGTTCTGGACGAGCTAA 60.021 41.667 0.00 0.00 39.29 3.09
5020 5418 3.299340 TCTTGTTCTGGACGAGCTAAC 57.701 47.619 0.00 0.00 39.29 2.34
5126 5532 1.277557 CACTCAGGAGCTTTGTAGGCT 59.722 52.381 0.00 0.00 43.26 4.58
5128 5534 2.498078 ACTCAGGAGCTTTGTAGGCTAC 59.502 50.000 17.76 17.76 40.40 3.58
5132 5538 1.471153 GGAGCTTTGTAGGCTACGACC 60.471 57.143 19.13 11.13 40.40 4.79
5196 5602 1.224075 CACCTCTGCACAGTGTCTTG 58.776 55.000 1.61 0.00 0.00 3.02
5226 5632 0.321996 GGCCACCTTCGAAGAAGTCT 59.678 55.000 26.61 0.38 45.90 3.24
5248 5654 1.069204 GATGGCATCCTCGTGAGCTTA 59.931 52.381 16.75 0.00 0.00 3.09
5256 5662 2.832129 TCCTCGTGAGCTTAAAGATGGT 59.168 45.455 0.00 0.00 0.00 3.55
5292 5698 1.032794 CATGTCAGCTAGGACGCCTA 58.967 55.000 5.64 5.64 40.72 3.93
5295 5701 0.315568 GTCAGCTAGGACGCCTATGG 59.684 60.000 6.14 0.00 35.36 2.74
5296 5702 0.185175 TCAGCTAGGACGCCTATGGA 59.815 55.000 6.14 2.94 35.36 3.41
5297 5703 0.600557 CAGCTAGGACGCCTATGGAG 59.399 60.000 6.14 0.00 35.36 3.86
5298 5704 0.540830 AGCTAGGACGCCTATGGAGG 60.541 60.000 6.14 0.00 46.93 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.844349 ACTGTTGCTACACCTATCCAAT 57.156 40.909 0.00 0.00 0.00 3.16
1 2 4.202419 ACAACTGTTGCTACACCTATCCAA 60.202 41.667 19.82 0.00 0.00 3.53
2 3 3.326588 ACAACTGTTGCTACACCTATCCA 59.673 43.478 19.82 0.00 0.00 3.41
3 4 3.939066 ACAACTGTTGCTACACCTATCC 58.061 45.455 19.82 0.00 0.00 2.59
16 17 3.498397 CCATCGTCTAAGCAACAACTGTT 59.502 43.478 0.00 0.00 39.12 3.16
17 18 3.067106 CCATCGTCTAAGCAACAACTGT 58.933 45.455 0.00 0.00 0.00 3.55
18 19 2.159653 GCCATCGTCTAAGCAACAACTG 60.160 50.000 0.00 0.00 0.00 3.16
19 20 2.076863 GCCATCGTCTAAGCAACAACT 58.923 47.619 0.00 0.00 0.00 3.16
20 21 2.076863 AGCCATCGTCTAAGCAACAAC 58.923 47.619 0.00 0.00 0.00 3.32
21 22 2.472695 AGCCATCGTCTAAGCAACAA 57.527 45.000 0.00 0.00 0.00 2.83
22 23 2.472695 AAGCCATCGTCTAAGCAACA 57.527 45.000 0.00 0.00 0.00 3.33
23 24 3.933332 ACTAAAGCCATCGTCTAAGCAAC 59.067 43.478 0.00 0.00 0.00 4.17
24 25 4.081642 AGACTAAAGCCATCGTCTAAGCAA 60.082 41.667 0.00 0.00 35.15 3.91
25 26 3.447586 AGACTAAAGCCATCGTCTAAGCA 59.552 43.478 0.00 0.00 35.15 3.91
26 27 4.048241 AGACTAAAGCCATCGTCTAAGC 57.952 45.455 0.00 0.00 35.15 3.09
27 28 6.693545 CAGTAAGACTAAAGCCATCGTCTAAG 59.306 42.308 0.00 0.00 35.82 2.18
28 29 6.152323 ACAGTAAGACTAAAGCCATCGTCTAA 59.848 38.462 0.00 0.00 35.82 2.10
29 30 5.651139 ACAGTAAGACTAAAGCCATCGTCTA 59.349 40.000 0.00 0.00 35.82 2.59
30 31 4.463186 ACAGTAAGACTAAAGCCATCGTCT 59.537 41.667 0.00 0.00 38.29 4.18
31 32 4.745649 ACAGTAAGACTAAAGCCATCGTC 58.254 43.478 0.00 0.00 0.00 4.20
32 33 4.803098 ACAGTAAGACTAAAGCCATCGT 57.197 40.909 0.00 0.00 0.00 3.73
33 34 4.929808 ACAACAGTAAGACTAAAGCCATCG 59.070 41.667 0.00 0.00 0.00 3.84
34 35 7.764443 TCATACAACAGTAAGACTAAAGCCATC 59.236 37.037 0.00 0.00 0.00 3.51
35 36 7.549488 GTCATACAACAGTAAGACTAAAGCCAT 59.451 37.037 4.35 0.00 34.99 4.40
36 37 6.872020 GTCATACAACAGTAAGACTAAAGCCA 59.128 38.462 4.35 0.00 34.99 4.75
37 38 7.097834 AGTCATACAACAGTAAGACTAAAGCC 58.902 38.462 10.67 0.00 42.02 4.35
38 39 8.535690 AAGTCATACAACAGTAAGACTAAAGC 57.464 34.615 12.21 0.00 42.62 3.51
40 41 9.826574 ACAAAGTCATACAACAGTAAGACTAAA 57.173 29.630 12.21 0.00 42.62 1.85
43 44 9.477484 CTTACAAAGTCATACAACAGTAAGACT 57.523 33.333 7.48 7.48 44.26 3.24
44 45 8.709646 CCTTACAAAGTCATACAACAGTAAGAC 58.290 37.037 0.00 3.57 39.45 3.01
45 46 8.426489 ACCTTACAAAGTCATACAACAGTAAGA 58.574 33.333 0.00 0.00 39.45 2.10
46 47 8.603242 ACCTTACAAAGTCATACAACAGTAAG 57.397 34.615 0.00 0.00 37.80 2.34
47 48 8.426489 AGACCTTACAAAGTCATACAACAGTAA 58.574 33.333 0.00 0.00 0.00 2.24
48 49 7.959175 AGACCTTACAAAGTCATACAACAGTA 58.041 34.615 0.00 0.00 0.00 2.74
49 50 6.827727 AGACCTTACAAAGTCATACAACAGT 58.172 36.000 0.00 0.00 0.00 3.55
50 51 7.226720 ACAAGACCTTACAAAGTCATACAACAG 59.773 37.037 0.00 0.00 0.00 3.16
51 52 7.011950 CACAAGACCTTACAAAGTCATACAACA 59.988 37.037 0.00 0.00 0.00 3.33
52 53 7.225931 TCACAAGACCTTACAAAGTCATACAAC 59.774 37.037 0.00 0.00 0.00 3.32
53 54 7.276658 TCACAAGACCTTACAAAGTCATACAA 58.723 34.615 0.00 0.00 0.00 2.41
54 55 6.822442 TCACAAGACCTTACAAAGTCATACA 58.178 36.000 0.00 0.00 0.00 2.29
55 56 7.152645 TCTCACAAGACCTTACAAAGTCATAC 58.847 38.462 0.00 0.00 0.00 2.39
56 57 7.297936 TCTCACAAGACCTTACAAAGTCATA 57.702 36.000 0.00 0.00 0.00 2.15
57 58 6.174720 TCTCACAAGACCTTACAAAGTCAT 57.825 37.500 0.00 0.00 0.00 3.06
58 59 5.607939 TCTCACAAGACCTTACAAAGTCA 57.392 39.130 0.00 0.00 0.00 3.41
59 60 8.603242 TTATTCTCACAAGACCTTACAAAGTC 57.397 34.615 0.00 0.00 0.00 3.01
60 61 9.574516 AATTATTCTCACAAGACCTTACAAAGT 57.425 29.630 0.00 0.00 0.00 2.66
72 73 9.736023 GGCCACTTTATTAATTATTCTCACAAG 57.264 33.333 0.00 0.00 0.00 3.16
73 74 8.402472 CGGCCACTTTATTAATTATTCTCACAA 58.598 33.333 2.24 0.00 0.00 3.33
74 75 7.468084 GCGGCCACTTTATTAATTATTCTCACA 60.468 37.037 2.24 0.00 0.00 3.58
75 76 6.856426 GCGGCCACTTTATTAATTATTCTCAC 59.144 38.462 2.24 0.00 0.00 3.51
76 77 6.544197 TGCGGCCACTTTATTAATTATTCTCA 59.456 34.615 2.24 0.00 0.00 3.27
77 78 6.966021 TGCGGCCACTTTATTAATTATTCTC 58.034 36.000 2.24 0.00 0.00 2.87
78 79 6.952773 TGCGGCCACTTTATTAATTATTCT 57.047 33.333 2.24 0.00 0.00 2.40
79 80 6.089417 GCATGCGGCCACTTTATTAATTATTC 59.911 38.462 0.00 0.00 36.11 1.75
80 81 5.925969 GCATGCGGCCACTTTATTAATTATT 59.074 36.000 0.00 0.00 36.11 1.40
81 82 5.010516 TGCATGCGGCCACTTTATTAATTAT 59.989 36.000 14.09 0.00 43.89 1.28
82 83 4.339530 TGCATGCGGCCACTTTATTAATTA 59.660 37.500 14.09 0.00 43.89 1.40
83 84 3.131933 TGCATGCGGCCACTTTATTAATT 59.868 39.130 14.09 0.00 43.89 1.40
84 85 2.692557 TGCATGCGGCCACTTTATTAAT 59.307 40.909 14.09 0.00 43.89 1.40
85 86 2.095461 TGCATGCGGCCACTTTATTAA 58.905 42.857 14.09 0.00 43.89 1.40
86 87 1.756430 TGCATGCGGCCACTTTATTA 58.244 45.000 14.09 0.00 43.89 0.98
87 88 1.067516 GATGCATGCGGCCACTTTATT 59.932 47.619 14.09 0.00 43.89 1.40
88 89 0.670162 GATGCATGCGGCCACTTTAT 59.330 50.000 14.09 0.00 43.89 1.40
89 90 1.713937 CGATGCATGCGGCCACTTTA 61.714 55.000 14.09 0.00 43.89 1.85
90 91 2.887360 GATGCATGCGGCCACTTT 59.113 55.556 14.09 0.00 43.89 2.66
91 92 3.511595 CGATGCATGCGGCCACTT 61.512 61.111 14.09 0.00 43.89 3.16
98 99 2.976350 ATCTGGGCGATGCATGCG 60.976 61.111 14.09 9.10 0.00 4.73
99 100 2.643272 CATCTGGGCGATGCATGC 59.357 61.111 11.82 11.82 42.75 4.06
105 106 1.525535 GCTTCTGCATCTGGGCGAT 60.526 57.895 0.00 0.00 39.41 4.58
106 107 2.124983 GCTTCTGCATCTGGGCGA 60.125 61.111 0.00 0.00 39.41 5.54
107 108 2.124819 AGCTTCTGCATCTGGGCG 60.125 61.111 0.00 0.00 42.74 6.13
108 109 2.119655 CCAGCTTCTGCATCTGGGC 61.120 63.158 13.52 3.71 42.70 5.36
109 110 4.237445 CCAGCTTCTGCATCTGGG 57.763 61.111 13.52 0.00 42.70 4.45
110 111 1.453379 CCCCAGCTTCTGCATCTGG 60.453 63.158 14.09 14.09 45.24 3.86
111 112 0.747283 GACCCCAGCTTCTGCATCTG 60.747 60.000 0.00 0.00 42.74 2.90
112 113 1.606531 GACCCCAGCTTCTGCATCT 59.393 57.895 0.00 0.00 42.74 2.90
113 114 1.452833 GGACCCCAGCTTCTGCATC 60.453 63.158 0.00 0.00 42.74 3.91
114 115 1.919600 GAGGACCCCAGCTTCTGCAT 61.920 60.000 0.00 0.00 42.74 3.96
115 116 2.530151 AGGACCCCAGCTTCTGCA 60.530 61.111 0.00 0.00 42.74 4.41
116 117 2.270527 GAGGACCCCAGCTTCTGC 59.729 66.667 0.00 0.00 40.05 4.26
117 118 1.614824 AGGAGGACCCCAGCTTCTG 60.615 63.158 2.29 0.00 36.73 3.02
118 119 1.306568 GAGGAGGACCCCAGCTTCT 60.307 63.158 2.29 0.00 36.73 2.85
119 120 2.371259 GGAGGAGGACCCCAGCTTC 61.371 68.421 2.29 0.00 36.73 3.86
120 121 2.285743 GGAGGAGGACCCCAGCTT 60.286 66.667 2.29 0.00 36.73 3.74
121 122 2.423479 AAAGGAGGAGGACCCCAGCT 62.423 60.000 2.29 0.00 36.73 4.24
122 123 1.501654 AAAAGGAGGAGGACCCCAGC 61.502 60.000 2.29 0.00 36.73 4.85
123 124 0.621082 GAAAAGGAGGAGGACCCCAG 59.379 60.000 2.29 0.00 36.73 4.45
124 125 0.196118 AGAAAAGGAGGAGGACCCCA 59.804 55.000 2.29 0.00 36.73 4.96
125 126 2.265526 TAGAAAAGGAGGAGGACCCC 57.734 55.000 0.00 0.00 36.73 4.95
126 127 4.652679 TTTTAGAAAAGGAGGAGGACCC 57.347 45.455 0.00 0.00 36.73 4.46
197 198 5.163478 GGAGTAGGTGTACGTACATGGATTT 60.163 44.000 29.58 14.77 39.07 2.17
306 307 7.035840 TGCTACGGAGGAAGTACTATTTTAG 57.964 40.000 0.00 0.00 0.00 1.85
318 319 4.258543 CCACTTATTTTGCTACGGAGGAA 58.741 43.478 0.00 0.00 0.00 3.36
319 320 3.869065 CCACTTATTTTGCTACGGAGGA 58.131 45.455 0.00 0.00 0.00 3.71
327 328 5.535753 AAAGTTGAGCCACTTATTTTGCT 57.464 34.783 0.00 0.00 35.87 3.91
395 396 8.398665 GCAACAGATAGGGTTGTCTTAATTTAG 58.601 37.037 7.07 0.00 45.64 1.85
422 423 6.327386 ACCAACCAATATGTAGAGGTGAAT 57.673 37.500 0.00 0.00 33.93 2.57
498 499 3.079578 CAAAGATCACTGCAGACCATGT 58.920 45.455 23.35 4.43 0.00 3.21
500 501 3.708403 TCAAAGATCACTGCAGACCAT 57.292 42.857 23.35 8.65 0.00 3.55
511 512 4.566759 CGCCGTATTCTCTTTCAAAGATCA 59.433 41.667 0.00 0.00 36.82 2.92
512 513 4.804139 TCGCCGTATTCTCTTTCAAAGATC 59.196 41.667 0.00 0.00 36.82 2.75
636 637 7.254556 CGCTAGAGTTCAAATCATGATGCTTAA 60.255 37.037 9.46 0.00 38.03 1.85
667 672 2.030007 CGAAATTGTGGGTGCATGACTT 60.030 45.455 0.00 0.00 0.00 3.01
780 787 4.531732 ACCAGATTACAATGCCCACATTTT 59.468 37.500 0.00 0.00 44.21 1.82
783 790 3.386932 ACCAGATTACAATGCCCACAT 57.613 42.857 0.00 0.00 38.49 3.21
804 811 1.118838 CAAAACCACCTTGCCCAGAA 58.881 50.000 0.00 0.00 0.00 3.02
906 914 0.326264 GTGAAGGGATCAGTGCAGGT 59.674 55.000 0.00 0.00 39.19 4.00
982 991 2.415357 CCATTTGCACGGCTACGATTTT 60.415 45.455 0.00 0.00 44.60 1.82
1110 1119 2.152016 GGAACTCTTACCTGTTGTGGC 58.848 52.381 0.00 0.00 0.00 5.01
1138 1147 5.760253 CGGAGTGCCTTGAAGAAATACATAT 59.240 40.000 0.00 0.00 0.00 1.78
1151 1160 0.099436 GCTTATTGCGGAGTGCCTTG 59.901 55.000 0.00 0.00 45.60 3.61
1166 1175 7.795047 TGATGAGATGAAAAGGACATAGCTTA 58.205 34.615 0.00 0.00 0.00 3.09
1237 1250 4.394729 TGCCTCACCTCTTCGTTTTTAAT 58.605 39.130 0.00 0.00 0.00 1.40
1238 1251 3.811083 TGCCTCACCTCTTCGTTTTTAA 58.189 40.909 0.00 0.00 0.00 1.52
1245 1258 2.099141 TGATTTGCCTCACCTCTTCG 57.901 50.000 0.00 0.00 0.00 3.79
1280 1293 2.660572 TCTGAGGTAGGTCAGAGCATC 58.339 52.381 1.66 0.00 46.52 3.91
1392 1405 6.909909 ACGAAGGTCCAAAAGTTCAATATTC 58.090 36.000 0.00 0.00 0.00 1.75
1612 1631 9.797642 ACATCTGCAAATATATTTACATCCAGA 57.202 29.630 10.34 14.97 0.00 3.86
1629 1650 4.734398 AACTTGGAAAACACATCTGCAA 57.266 36.364 0.00 0.00 0.00 4.08
1684 1707 1.376609 GGCCCAACAAGGATGTAGCG 61.377 60.000 0.00 0.00 39.40 4.26
1717 1740 5.359194 TTTCTCCATGGGTTCTGAGATAC 57.641 43.478 13.02 0.00 34.11 2.24
1862 1885 1.657538 GCGCTTCGTTTCAACTCTGTG 60.658 52.381 0.00 0.00 0.00 3.66
1876 1899 1.951631 GGCCGAGATGTAGCGCTTC 60.952 63.158 18.68 12.25 0.00 3.86
1928 1951 5.997746 TGTAGTCTAGCTTTGCAAACTCAAT 59.002 36.000 8.05 3.95 0.00 2.57
1945 1968 3.240302 ACCTTGCACTAGGTTGTAGTCT 58.760 45.455 4.12 0.00 46.39 3.24
2119 2144 1.727467 GATTGCGCGCCCAAGTTAT 59.273 52.632 30.77 10.04 0.00 1.89
2226 2251 6.316390 AGAAATCGTCAAAAACTGAGACAAGT 59.684 34.615 0.00 0.00 33.60 3.16
2294 2320 5.523552 GCAAAAGTCAACCTGTTTATTGCTT 59.476 36.000 0.00 0.00 38.03 3.91
2366 2425 7.655328 CACCTATTGTTTTCAAGCCAATTACAA 59.345 33.333 0.00 0.00 43.41 2.41
2396 2455 0.879090 CTTGCTCAACTGCATGCTCA 59.121 50.000 20.33 0.00 42.96 4.26
2433 2492 5.876357 AGCAATTGTACCCTTGTAGAAAGA 58.124 37.500 7.40 0.00 34.32 2.52
2451 2510 8.529424 TCTTCAATCTGATTTATGGAAGCAAT 57.471 30.769 17.05 0.00 32.44 3.56
2591 2651 7.933577 TGATAGCTAGATTGTAATTGTGGAAGG 59.066 37.037 0.00 0.00 0.00 3.46
2634 2696 4.216257 TGCTTGCTGGAAACATACTTCTTC 59.784 41.667 0.00 0.00 41.51 2.87
2662 2733 1.418637 ACCACCAACATGACTAACCGT 59.581 47.619 0.00 0.00 0.00 4.83
2663 2734 2.178912 ACCACCAACATGACTAACCG 57.821 50.000 0.00 0.00 0.00 4.44
2664 2735 5.708230 TCAATAACCACCAACATGACTAACC 59.292 40.000 0.00 0.00 0.00 2.85
2702 2773 2.667348 ACCCTAAGTGGAGGTGACG 58.333 57.895 0.00 0.00 38.35 4.35
2729 2831 2.685897 GGTTTGAGTTAAGTGGTGCACA 59.314 45.455 20.43 1.62 36.74 4.57
2730 2832 2.685897 TGGTTTGAGTTAAGTGGTGCAC 59.314 45.455 8.80 8.80 34.10 4.57
2736 2838 3.311322 TGCGAAGTGGTTTGAGTTAAGTG 59.689 43.478 0.00 0.00 0.00 3.16
2740 2842 4.636648 TCTTTTGCGAAGTGGTTTGAGTTA 59.363 37.500 0.00 0.00 0.00 2.24
2756 2858 9.398170 AGCTTTTTCTTTTTCTTTTTCTTTTGC 57.602 25.926 0.00 0.00 0.00 3.68
2763 2865 9.905713 AAGGGATAGCTTTTTCTTTTTCTTTTT 57.094 25.926 0.00 0.00 0.00 1.94
2774 2876 4.861196 AGGAGGAAAGGGATAGCTTTTTC 58.139 43.478 0.00 0.00 0.00 2.29
2782 2884 3.312080 TGGGAATGAGGAGGAAAGGGATA 60.312 47.826 0.00 0.00 0.00 2.59
2805 2907 6.430925 TGTTGTACAATTGAGGAAGAGGAATG 59.569 38.462 13.59 0.00 0.00 2.67
2846 2948 1.823470 GGGCCGCATGTCATTGCTA 60.823 57.895 0.00 0.00 40.54 3.49
2860 2962 1.381191 CAGTGGGTTTATGGGGGCC 60.381 63.158 0.00 0.00 0.00 5.80
2868 2970 7.039363 CCAGAAAATAATTGTCCAGTGGGTTTA 60.039 37.037 9.92 3.19 34.93 2.01
2943 3050 1.458486 CCCCAAGCACCACTGGTTA 59.542 57.895 0.00 0.00 35.89 2.85
2967 3081 5.468746 GTGTTGCTACAGTTGTTTGGATCTA 59.531 40.000 0.00 0.00 34.24 1.98
2974 3088 3.933955 TGTACGTGTTGCTACAGTTGTTT 59.066 39.130 0.00 0.00 34.24 2.83
2990 3175 0.608130 TGCTTCTGCTCCATGTACGT 59.392 50.000 0.00 0.00 40.48 3.57
3044 3229 3.009723 TCCAAAAGAGACATCAATCCGC 58.990 45.455 0.00 0.00 0.00 5.54
3045 3230 3.064545 GCTCCAAAAGAGACATCAATCCG 59.935 47.826 0.00 0.00 46.50 4.18
3070 3255 6.040054 TGCAATGAAACATGAATCCCTCTATG 59.960 38.462 0.00 0.00 0.00 2.23
3097 3283 9.829507 AAAATGGACAAATACAACATTCAAGAA 57.170 25.926 0.00 0.00 31.89 2.52
3202 3511 5.221823 TGACTTTATGAGGTGACATGGTTCA 60.222 40.000 0.00 0.00 0.00 3.18
3203 3512 5.245531 TGACTTTATGAGGTGACATGGTTC 58.754 41.667 0.00 0.00 0.00 3.62
3307 3674 7.780271 GGAGGGAGTATGTTGAATCCTAAATTT 59.220 37.037 0.00 0.00 32.18 1.82
3314 3681 4.713792 ATGGAGGGAGTATGTTGAATCC 57.286 45.455 0.00 0.00 0.00 3.01
3326 3693 4.702131 CCTTGTAAACTGAAATGGAGGGAG 59.298 45.833 0.00 0.00 0.00 4.30
3327 3694 4.662278 CCTTGTAAACTGAAATGGAGGGA 58.338 43.478 0.00 0.00 0.00 4.20
3328 3695 3.193479 GCCTTGTAAACTGAAATGGAGGG 59.807 47.826 0.00 0.00 0.00 4.30
3329 3696 3.119849 CGCCTTGTAAACTGAAATGGAGG 60.120 47.826 0.00 0.00 0.00 4.30
3330 3697 3.502211 ACGCCTTGTAAACTGAAATGGAG 59.498 43.478 0.00 0.00 0.00 3.86
3331 3698 3.252215 CACGCCTTGTAAACTGAAATGGA 59.748 43.478 0.00 0.00 0.00 3.41
3332 3699 3.564511 CACGCCTTGTAAACTGAAATGG 58.435 45.455 0.00 0.00 0.00 3.16
3333 3700 2.979813 GCACGCCTTGTAAACTGAAATG 59.020 45.455 0.00 0.00 0.00 2.32
3334 3701 2.350388 CGCACGCCTTGTAAACTGAAAT 60.350 45.455 0.00 0.00 0.00 2.17
3335 3702 1.003331 CGCACGCCTTGTAAACTGAAA 60.003 47.619 0.00 0.00 0.00 2.69
3336 3703 0.584396 CGCACGCCTTGTAAACTGAA 59.416 50.000 0.00 0.00 0.00 3.02
3337 3704 1.837538 GCGCACGCCTTGTAAACTGA 61.838 55.000 0.30 0.00 34.56 3.41
3338 3705 1.440353 GCGCACGCCTTGTAAACTG 60.440 57.895 0.30 0.00 34.56 3.16
3339 3706 2.943653 GCGCACGCCTTGTAAACT 59.056 55.556 0.30 0.00 34.56 2.66
3340 3707 1.888958 TACGCGCACGCCTTGTAAAC 61.889 55.000 5.73 0.00 45.53 2.01
3341 3708 1.664017 TACGCGCACGCCTTGTAAA 60.664 52.632 5.73 0.00 45.53 2.01
3342 3709 2.049341 TACGCGCACGCCTTGTAA 60.049 55.556 5.73 0.00 45.53 2.41
3343 3710 2.806198 GTACGCGCACGCCTTGTA 60.806 61.111 5.73 3.39 45.53 2.41
3351 3718 3.010413 AACCTAGGGGTACGCGCAC 62.010 63.158 14.81 2.26 46.67 5.34
3352 3719 2.681064 AACCTAGGGGTACGCGCA 60.681 61.111 14.81 0.00 46.67 6.09
3353 3720 2.202837 CAACCTAGGGGTACGCGC 60.203 66.667 14.81 0.00 46.67 6.86
3354 3721 2.202837 GCAACCTAGGGGTACGCG 60.203 66.667 14.81 3.53 46.67 6.01
3355 3722 2.187896 TTGGCAACCTAGGGGTACGC 62.188 60.000 14.81 7.61 46.67 4.42
3356 3723 0.544697 ATTGGCAACCTAGGGGTACG 59.455 55.000 14.81 0.00 46.67 3.67
3357 3724 2.820728 AATTGGCAACCTAGGGGTAC 57.179 50.000 14.81 1.13 46.67 3.34
3358 3725 3.837399 AAAATTGGCAACCTAGGGGTA 57.163 42.857 14.81 0.00 46.67 3.69
3360 3727 4.099419 GTGATAAAATTGGCAACCTAGGGG 59.901 45.833 14.81 6.00 38.88 4.79
3361 3728 4.099419 GGTGATAAAATTGGCAACCTAGGG 59.901 45.833 14.81 0.00 0.00 3.53
3362 3729 4.202010 CGGTGATAAAATTGGCAACCTAGG 60.202 45.833 7.41 7.41 0.00 3.02
3363 3730 4.398044 ACGGTGATAAAATTGGCAACCTAG 59.602 41.667 0.00 0.00 0.00 3.02
3364 3731 4.337145 ACGGTGATAAAATTGGCAACCTA 58.663 39.130 0.00 0.00 0.00 3.08
3365 3732 3.161866 ACGGTGATAAAATTGGCAACCT 58.838 40.909 0.00 0.00 0.00 3.50
3366 3733 3.586100 ACGGTGATAAAATTGGCAACC 57.414 42.857 0.00 0.00 0.00 3.77
3367 3734 9.953697 TTATATTACGGTGATAAAATTGGCAAC 57.046 29.630 0.00 0.00 0.00 4.17
3368 3735 9.953697 GTTATATTACGGTGATAAAATTGGCAA 57.046 29.630 0.68 0.68 0.00 4.52
3369 3736 9.344772 AGTTATATTACGGTGATAAAATTGGCA 57.655 29.630 0.00 0.00 0.00 4.92
3411 3778 9.878667 TCAGATGTTCTATTTTCAAACGGTATA 57.121 29.630 0.00 0.00 0.00 1.47
3412 3779 8.786826 TCAGATGTTCTATTTTCAAACGGTAT 57.213 30.769 0.00 0.00 0.00 2.73
3413 3780 8.610248 TTCAGATGTTCTATTTTCAAACGGTA 57.390 30.769 0.00 0.00 0.00 4.02
3414 3781 7.228706 ACTTCAGATGTTCTATTTTCAAACGGT 59.771 33.333 0.00 0.00 0.00 4.83
3415 3782 7.584987 ACTTCAGATGTTCTATTTTCAAACGG 58.415 34.615 0.00 0.00 0.00 4.44
3416 3783 9.450807 AAACTTCAGATGTTCTATTTTCAAACG 57.549 29.630 2.28 0.00 0.00 3.60
3453 3820 8.960591 CATTTTGACCAACCTAATAGAAGTCAT 58.039 33.333 0.00 0.00 33.21 3.06
3454 3821 8.160765 TCATTTTGACCAACCTAATAGAAGTCA 58.839 33.333 0.00 0.00 0.00 3.41
3455 3822 8.451748 GTCATTTTGACCAACCTAATAGAAGTC 58.548 37.037 0.00 0.00 41.37 3.01
3456 3823 7.119262 CGTCATTTTGACCAACCTAATAGAAGT 59.881 37.037 2.26 0.00 44.20 3.01
3457 3824 7.333423 TCGTCATTTTGACCAACCTAATAGAAG 59.667 37.037 2.26 0.00 44.20 2.85
3458 3825 7.118680 GTCGTCATTTTGACCAACCTAATAGAA 59.881 37.037 2.26 0.00 44.20 2.10
3459 3826 6.592607 GTCGTCATTTTGACCAACCTAATAGA 59.407 38.462 2.26 0.00 44.20 1.98
3460 3827 6.772078 GTCGTCATTTTGACCAACCTAATAG 58.228 40.000 2.26 0.00 44.20 1.73
3461 3828 6.730960 GTCGTCATTTTGACCAACCTAATA 57.269 37.500 2.26 0.00 44.20 0.98
3462 3829 5.622770 GTCGTCATTTTGACCAACCTAAT 57.377 39.130 2.26 0.00 44.20 1.73
3471 3838 3.604875 TCCCTAGGTCGTCATTTTGAC 57.395 47.619 8.29 0.00 43.65 3.18
3472 3839 4.344102 CCTATCCCTAGGTCGTCATTTTGA 59.656 45.833 8.29 0.00 39.89 2.69
3473 3840 4.632153 CCTATCCCTAGGTCGTCATTTTG 58.368 47.826 8.29 0.00 39.89 2.44
3474 3841 3.071167 GCCTATCCCTAGGTCGTCATTTT 59.929 47.826 8.29 0.00 45.62 1.82
3475 3842 2.633481 GCCTATCCCTAGGTCGTCATTT 59.367 50.000 8.29 0.00 45.62 2.32
3476 3843 2.249139 GCCTATCCCTAGGTCGTCATT 58.751 52.381 8.29 0.00 45.62 2.57
3477 3844 1.550409 GGCCTATCCCTAGGTCGTCAT 60.550 57.143 8.29 0.00 45.62 3.06
3478 3845 0.178970 GGCCTATCCCTAGGTCGTCA 60.179 60.000 8.29 0.00 45.62 4.35
3479 3846 2.656049 GGCCTATCCCTAGGTCGTC 58.344 63.158 8.29 0.00 45.62 4.20
3480 3847 4.947921 GGCCTATCCCTAGGTCGT 57.052 61.111 8.29 0.00 45.62 4.34
3482 3849 2.284276 GCCGGCCTATCCCTAGGTC 61.284 68.421 18.11 0.00 45.62 3.85
3483 3850 2.203803 GCCGGCCTATCCCTAGGT 60.204 66.667 18.11 0.00 45.62 3.08
3484 3851 3.382832 CGCCGGCCTATCCCTAGG 61.383 72.222 23.46 0.06 46.48 3.02
3485 3852 4.070552 GCGCCGGCCTATCCCTAG 62.071 72.222 23.46 4.03 0.00 3.02
3486 3853 4.926162 TGCGCCGGCCTATCCCTA 62.926 66.667 23.46 0.00 38.85 3.53
3499 3866 1.440353 CAGTTTACAAGGCGTGCGC 60.440 57.895 8.17 8.17 41.06 6.09
3500 3867 0.163788 CTCAGTTTACAAGGCGTGCG 59.836 55.000 0.00 0.00 0.00 5.34
3501 3868 1.461127 CTCTCAGTTTACAAGGCGTGC 59.539 52.381 0.00 0.00 0.00 5.34
3502 3869 2.989840 CTCTCTCAGTTTACAAGGCGTG 59.010 50.000 0.00 0.00 0.00 5.34
3503 3870 2.891580 TCTCTCTCAGTTTACAAGGCGT 59.108 45.455 0.00 0.00 0.00 5.68
3504 3871 3.506810 CTCTCTCTCAGTTTACAAGGCG 58.493 50.000 0.00 0.00 0.00 5.52
3505 3872 3.368948 CCCTCTCTCTCAGTTTACAAGGC 60.369 52.174 0.00 0.00 0.00 4.35
3506 3873 4.090090 TCCCTCTCTCTCAGTTTACAAGG 58.910 47.826 0.00 0.00 0.00 3.61
3507 3874 4.770010 ACTCCCTCTCTCTCAGTTTACAAG 59.230 45.833 0.00 0.00 0.00 3.16
3508 3875 4.742012 ACTCCCTCTCTCTCAGTTTACAA 58.258 43.478 0.00 0.00 0.00 2.41
3509 3876 4.390129 ACTCCCTCTCTCTCAGTTTACA 57.610 45.455 0.00 0.00 0.00 2.41
3510 3877 6.181908 TCTTACTCCCTCTCTCTCAGTTTAC 58.818 44.000 0.00 0.00 0.00 2.01
3511 3878 6.390048 TCTTACTCCCTCTCTCTCAGTTTA 57.610 41.667 0.00 0.00 0.00 2.01
3512 3879 5.263872 TCTTACTCCCTCTCTCTCAGTTT 57.736 43.478 0.00 0.00 0.00 2.66
3513 3880 4.938575 TCTTACTCCCTCTCTCTCAGTT 57.061 45.455 0.00 0.00 0.00 3.16
3514 3881 4.938575 TTCTTACTCCCTCTCTCTCAGT 57.061 45.455 0.00 0.00 0.00 3.41
3515 3882 6.597832 TTTTTCTTACTCCCTCTCTCTCAG 57.402 41.667 0.00 0.00 0.00 3.35
3604 3972 8.028540 TCAGTTATTTACATACACTGCAACTG 57.971 34.615 0.00 0.00 40.90 3.16
3655 4023 9.515020 CCGCATCAATAAACTACAAAAATACAT 57.485 29.630 0.00 0.00 0.00 2.29
3658 4026 7.539436 TGCCGCATCAATAAACTACAAAAATA 58.461 30.769 0.00 0.00 0.00 1.40
3713 4081 1.000506 GCTGGAACGTACTTCTGGTCA 59.999 52.381 0.00 0.00 0.00 4.02
3725 4093 0.512952 CTTCGAGGTTTGCTGGAACG 59.487 55.000 0.00 0.00 0.00 3.95
3789 4157 7.932491 TCCCATTAATATGAATGCAATGTTTGG 59.068 33.333 7.23 1.68 35.79 3.28
3861 4229 1.994779 GCAAACGGCTTTGATGATTGG 59.005 47.619 11.81 0.00 39.43 3.16
3887 4255 2.481289 TGTCATTCATAACACGGGCA 57.519 45.000 0.00 0.00 0.00 5.36
3917 4285 7.936496 TTTGCATGAGACATTATTTACCTCA 57.064 32.000 0.00 0.00 38.12 3.86
3930 4298 7.024340 ACTATTGATCACATTTGCATGAGAC 57.976 36.000 0.00 0.00 33.39 3.36
3994 4364 2.854522 CCGCTTTAGTGGGACAAGG 58.145 57.895 1.26 0.00 44.16 3.61
4004 4375 1.128692 CGAAGCTTGTTCCCGCTTTAG 59.871 52.381 2.10 0.00 45.70 1.85
4099 4471 2.263945 GCTTGCTCGACTACTTCCTTC 58.736 52.381 0.00 0.00 0.00 3.46
4102 4474 1.929836 CATGCTTGCTCGACTACTTCC 59.070 52.381 0.00 0.00 0.00 3.46
4147 4519 2.264794 GGATGAACCGTCGGCTGT 59.735 61.111 12.28 0.00 0.00 4.40
4165 4537 2.614057 CACTCTTGACAAGACCACCAAC 59.386 50.000 13.99 0.00 33.12 3.77
4207 4579 6.161855 TCATCGTGCTTGTATAGGAAATCT 57.838 37.500 0.00 0.00 0.00 2.40
4444 4824 6.154203 TGTTTTGGTTCTTACATGCATTGA 57.846 33.333 0.00 0.00 0.00 2.57
4477 4857 8.376203 TCACAACACAACATTTATTTGAAAACG 58.624 29.630 0.00 0.00 0.00 3.60
4495 4875 5.353123 TCTCACAAACCTTAACTCACAACAC 59.647 40.000 0.00 0.00 0.00 3.32
4504 4884 6.635030 ATTGTCCTTCTCACAAACCTTAAC 57.365 37.500 0.00 0.00 37.30 2.01
4589 4977 2.267426 CGCCTCGAACAATCACACATA 58.733 47.619 0.00 0.00 0.00 2.29
4655 5047 9.646336 CTTTATATGTATAACCTGCGTGAAAAC 57.354 33.333 0.00 0.00 0.00 2.43
4848 5241 2.290641 CCTTGTACATATTGCCGCCTTC 59.709 50.000 0.00 0.00 0.00 3.46
4868 5261 6.599638 ACGTATAACCGAGGTATATACTTCCC 59.400 42.308 16.83 0.00 32.73 3.97
4872 5265 6.595716 GGTCACGTATAACCGAGGTATATACT 59.404 42.308 12.54 0.00 32.73 2.12
4873 5266 6.776094 GGTCACGTATAACCGAGGTATATAC 58.224 44.000 4.14 4.14 31.96 1.47
4975 5372 6.024552 TGATTAGTCCCAGTGAATTTTTGC 57.975 37.500 0.00 0.00 0.00 3.68
5007 5405 2.440539 AACTGTGTTAGCTCGTCCAG 57.559 50.000 0.00 0.00 0.00 3.86
5047 5447 7.979444 AAGCTGCACTTAGTTCAAATAGTTA 57.021 32.000 1.02 0.00 36.62 2.24
5080 5485 5.830991 GGGAGCGGACTAGATATATGATCTT 59.169 44.000 0.00 0.00 0.00 2.40
5084 5489 4.227527 TGAGGGAGCGGACTAGATATATGA 59.772 45.833 0.00 0.00 0.00 2.15
5090 5496 0.553819 AGTGAGGGAGCGGACTAGAT 59.446 55.000 0.00 0.00 0.00 1.98
5126 5532 0.659427 CGGAGATTGCTACGGTCGTA 59.341 55.000 3.17 3.17 44.84 3.43
5128 5534 4.303853 CGGAGATTGCTACGGTCG 57.696 61.111 0.00 0.00 44.84 4.79
5176 5582 0.107456 AAGACACTGTGCAGAGGTGG 59.893 55.000 16.19 6.84 35.53 4.61
5178 5584 0.533755 GCAAGACACTGTGCAGAGGT 60.534 55.000 16.19 10.05 40.58 3.85
5188 5594 0.110328 CGAGTCGTACGCAAGACACT 60.110 55.000 11.24 7.62 39.67 3.55
5248 5654 3.185455 ACTTCTAGCTCCCACCATCTTT 58.815 45.455 0.00 0.00 0.00 2.52
5256 5662 3.378512 ACATGATGACTTCTAGCTCCCA 58.621 45.455 0.00 0.00 0.00 4.37


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.