Multiple sequence alignment - TraesCS2B01G017000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G017000 chr2B 100.000 3539 0 0 1 3539 7857756 7854218 0.000000e+00 6536.0
1 TraesCS2B01G017000 chr2B 91.654 1330 81 15 350 1651 7768037 7766710 0.000000e+00 1814.0
2 TraesCS2B01G017000 chr2B 92.088 771 51 1 1705 2475 7766713 7765953 0.000000e+00 1077.0
3 TraesCS2B01G017000 chr2B 81.628 479 81 7 3064 3539 489025836 489025362 1.190000e-104 390.0
4 TraesCS2B01G017000 chr2B 88.356 146 13 2 4 145 7768218 7768073 4.700000e-39 172.0
5 TraesCS2B01G017000 chr2B 89.583 96 8 2 2686 2781 566907446 566907539 1.730000e-23 121.0
6 TraesCS2B01G017000 chr2B 84.615 117 16 2 2470 2585 7765422 7765307 8.030000e-22 115.0
7 TraesCS2B01G017000 chr2D 92.564 2219 137 11 347 2548 2929862 2932069 0.000000e+00 3158.0
8 TraesCS2B01G017000 chr2D 83.463 387 41 11 929 1294 2779180 2779564 4.380000e-89 339.0
9 TraesCS2B01G017000 chr2D 91.266 229 18 2 2321 2548 2934146 2934373 9.540000e-81 311.0
10 TraesCS2B01G017000 chr2D 87.919 149 14 1 1 145 2929681 2929829 4.700000e-39 172.0
11 TraesCS2B01G017000 chr2D 95.238 84 4 0 2698 2781 538943424 538943507 2.220000e-27 134.0
12 TraesCS2B01G017000 chr2D 91.579 95 7 1 2691 2784 99658117 99658211 2.870000e-26 130.0
13 TraesCS2B01G017000 chr2D 92.135 89 7 0 2693 2781 87812065 87811977 3.710000e-25 126.0
14 TraesCS2B01G017000 chr2D 89.691 97 7 3 239 334 310547624 310547718 1.730000e-23 121.0
15 TraesCS2B01G017000 chr2D 91.765 85 7 0 2698 2782 25037967 25037883 6.210000e-23 119.0
16 TraesCS2B01G017000 chr2D 91.837 49 4 0 735 783 574977625 574977673 6.340000e-08 69.4
17 TraesCS2B01G017000 chr2A 91.562 2157 157 10 374 2513 2741303 2739155 0.000000e+00 2952.0
18 TraesCS2B01G017000 chr2A 85.970 335 31 7 1 322 2741717 2741386 9.410000e-91 344.0
19 TraesCS2B01G017000 chr2A 93.151 219 14 1 3321 3538 72912539 72912757 1.590000e-83 320.0
20 TraesCS2B01G017000 chr6D 81.874 1473 228 25 1091 2544 44496318 44497770 0.000000e+00 1205.0
21 TraesCS2B01G017000 chr6D 73.234 538 112 29 1910 2435 97520609 97520092 2.190000e-37 167.0
22 TraesCS2B01G017000 chr6D 74.449 227 43 12 3322 3539 160461382 160461162 2.260000e-12 84.2
23 TraesCS2B01G017000 chr6A 81.313 1477 237 25 1082 2538 59320525 59321982 0.000000e+00 1162.0
24 TraesCS2B01G017000 chr6A 89.583 96 8 2 239 333 351609303 351609397 1.730000e-23 121.0
25 TraesCS2B01G017000 chr5B 93.964 497 30 0 3042 3538 534179282 534179778 0.000000e+00 752.0
26 TraesCS2B01G017000 chr5A 80.897 780 129 15 1091 1851 613578479 613579257 6.540000e-167 597.0
27 TraesCS2B01G017000 chr5A 82.006 628 98 12 1916 2537 613579393 613580011 1.460000e-143 520.0
28 TraesCS2B01G017000 chr5A 92.941 85 6 0 2698 2782 90623662 90623746 1.330000e-24 124.0
29 TraesCS2B01G017000 chr3A 90.698 344 29 2 3196 3539 712678153 712677813 4.160000e-124 455.0
30 TraesCS2B01G017000 chr3A 72.403 308 69 12 3240 3539 502152364 502152065 2.260000e-12 84.2
31 TraesCS2B01G017000 chr3A 92.593 54 4 0 76 129 694966235 694966288 1.050000e-10 78.7
32 TraesCS2B01G017000 chr5D 79.530 596 107 13 1921 2512 491417570 491418154 9.140000e-111 411.0
33 TraesCS2B01G017000 chr5D 90.741 54 5 0 76 129 58532880 58532827 4.900000e-09 73.1
34 TraesCS2B01G017000 chr3D 80.529 529 97 5 1123 1647 319866881 319867407 5.500000e-108 401.0
35 TraesCS2B01G017000 chr3D 91.579 95 6 2 242 335 236628893 236628800 2.870000e-26 130.0
36 TraesCS2B01G017000 chr3D 92.593 54 4 0 76 129 558559334 558559387 1.050000e-10 78.7
37 TraesCS2B01G017000 chr3D 90.741 54 5 0 76 129 236629036 236628983 4.900000e-09 73.1
38 TraesCS2B01G017000 chr3B 79.916 478 92 4 3064 3539 342894897 342895372 7.270000e-92 348.0
39 TraesCS2B01G017000 chr3B 92.683 41 2 1 127 166 115502559 115502599 1.370000e-04 58.4
40 TraesCS2B01G017000 chr1B 73.592 568 115 27 1901 2458 452572769 452573311 6.030000e-43 185.0
41 TraesCS2B01G017000 chr1D 73.369 567 118 26 1901 2458 337218216 337218758 2.810000e-41 180.0
42 TraesCS2B01G017000 chr1D 94.048 84 5 0 2698 2781 58438788 58438871 1.030000e-25 128.0
43 TraesCS2B01G017000 chr1D 95.000 80 2 2 1 78 141312998 141313077 1.330000e-24 124.0
44 TraesCS2B01G017000 chr1D 91.954 87 7 0 2695 2781 402722637 402722723 4.800000e-24 122.0
45 TraesCS2B01G017000 chr6B 90.625 96 7 2 239 333 384857534 384857628 3.710000e-25 126.0
46 TraesCS2B01G017000 chr6B 90.741 54 5 0 76 129 269083701 269083648 4.900000e-09 73.1
47 TraesCS2B01G017000 chrUn 95.000 80 2 2 1 78 36546001 36545922 1.330000e-24 124.0
48 TraesCS2B01G017000 chrUn 95.000 80 2 2 1 78 229501090 229501011 1.330000e-24 124.0
49 TraesCS2B01G017000 chrUn 95.000 80 2 2 1 78 275330124 275330203 1.330000e-24 124.0
50 TraesCS2B01G017000 chr4D 95.000 80 2 2 1 78 123300028 123299949 1.330000e-24 124.0
51 TraesCS2B01G017000 chr4D 89.474 95 10 0 239 333 301016486 301016580 1.730000e-23 121.0
52 TraesCS2B01G017000 chr1A 95.000 80 2 2 1 78 415656180 415656101 1.330000e-24 124.0
53 TraesCS2B01G017000 chr1A 89.041 73 8 0 735 807 337982264 337982336 1.350000e-14 91.6
54 TraesCS2B01G017000 chr7D 89.691 97 8 2 239 334 206601372 206601467 4.800000e-24 122.0
55 TraesCS2B01G017000 chr7D 90.741 54 5 0 76 129 624785412 624785465 4.900000e-09 73.1
56 TraesCS2B01G017000 chr7D 84.906 53 8 0 735 787 64544585 64544637 2.000000e-03 54.7
57 TraesCS2B01G017000 chr7B 89.474 95 10 0 239 333 688589057 688589151 1.730000e-23 121.0
58 TraesCS2B01G017000 chr4B 89.474 95 10 0 239 333 374722543 374722637 1.730000e-23 121.0
59 TraesCS2B01G017000 chr4B 88.119 101 9 3 239 337 440888345 440888444 2.230000e-22 117.0
60 TraesCS2B01G017000 chr7A 89.888 89 9 0 2693 2781 715780316 715780228 8.030000e-22 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G017000 chr2B 7854218 7857756 3538 True 6536.000000 6536 100.00000 1 3539 1 chr2B.!!$R1 3538
1 TraesCS2B01G017000 chr2B 7765307 7768218 2911 True 794.500000 1814 89.17825 4 2585 4 chr2B.!!$R3 2581
2 TraesCS2B01G017000 chr2D 2929681 2934373 4692 False 1213.666667 3158 90.58300 1 2548 3 chr2D.!!$F6 2547
3 TraesCS2B01G017000 chr2A 2739155 2741717 2562 True 1648.000000 2952 88.76600 1 2513 2 chr2A.!!$R1 2512
4 TraesCS2B01G017000 chr6D 44496318 44497770 1452 False 1205.000000 1205 81.87400 1091 2544 1 chr6D.!!$F1 1453
5 TraesCS2B01G017000 chr6A 59320525 59321982 1457 False 1162.000000 1162 81.31300 1082 2538 1 chr6A.!!$F1 1456
6 TraesCS2B01G017000 chr5A 613578479 613580011 1532 False 558.500000 597 81.45150 1091 2537 2 chr5A.!!$F2 1446
7 TraesCS2B01G017000 chr5D 491417570 491418154 584 False 411.000000 411 79.53000 1921 2512 1 chr5D.!!$F1 591
8 TraesCS2B01G017000 chr3D 319866881 319867407 526 False 401.000000 401 80.52900 1123 1647 1 chr3D.!!$F1 524

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
371 422 0.320946 GGGTGGCGTTTGCACTACTA 60.321 55.000 0.00 0.00 45.35 1.82 F
1512 1585 1.445066 CACTGACGAGTGCGCTCAT 60.445 57.895 25.95 12.45 43.24 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1530 1615 0.036732 TCAGCTGGCCGATTTCAACT 59.963 50.0 15.13 0.0 0.00 3.16 R
2969 4975 0.100146 GACGTACTCGGCTTACAGGG 59.900 60.0 0.00 0.0 42.52 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 3.003171 TCATTCGAAGAGCTGAGATCTCG 59.997 47.826 17.76 13.10 38.43 4.04
112 117 2.817844 AGGGCCTAATGTGTTTTTCGAC 59.182 45.455 2.82 0.00 0.00 4.20
114 119 3.192633 GGGCCTAATGTGTTTTTCGACAT 59.807 43.478 0.84 0.00 34.16 3.06
124 129 6.100004 TGTGTTTTTCGACATTGCCTTTAAA 58.900 32.000 0.00 0.00 0.00 1.52
223 228 2.369532 GCATTAGGTAACGGATGGGGTA 59.630 50.000 0.00 0.00 46.39 3.69
226 231 5.104652 GCATTAGGTAACGGATGGGGTATAT 60.105 44.000 0.00 0.00 46.39 0.86
227 232 6.577638 GCATTAGGTAACGGATGGGGTATATT 60.578 42.308 0.00 0.00 46.39 1.28
277 292 8.648097 GTCATATATTATTGCTCTAACACGTGG 58.352 37.037 21.57 1.74 0.00 4.94
292 307 2.661675 CACGTGGTCAATGTTAGTCTCG 59.338 50.000 7.95 0.00 0.00 4.04
296 311 4.143389 CGTGGTCAATGTTAGTCTCGAAAC 60.143 45.833 0.00 0.00 0.00 2.78
310 325 1.064758 TCGAAACATGCATTAGGCCCT 60.065 47.619 0.00 0.00 43.89 5.19
311 326 2.171659 TCGAAACATGCATTAGGCCCTA 59.828 45.455 0.00 0.00 43.89 3.53
312 327 2.290641 CGAAACATGCATTAGGCCCTAC 59.709 50.000 0.00 0.00 43.89 3.18
313 328 3.287222 GAAACATGCATTAGGCCCTACA 58.713 45.455 0.00 0.00 43.89 2.74
314 329 3.600448 AACATGCATTAGGCCCTACAT 57.400 42.857 0.00 0.00 43.89 2.29
315 330 4.722526 AACATGCATTAGGCCCTACATA 57.277 40.909 0.00 0.00 43.89 2.29
316 331 4.934797 ACATGCATTAGGCCCTACATAT 57.065 40.909 0.00 0.00 43.89 1.78
317 332 4.592942 ACATGCATTAGGCCCTACATATG 58.407 43.478 0.00 0.00 43.89 1.78
318 333 4.289410 ACATGCATTAGGCCCTACATATGA 59.711 41.667 10.38 0.00 43.89 2.15
319 334 4.558226 TGCATTAGGCCCTACATATGAG 57.442 45.455 10.38 2.59 43.89 2.90
320 335 3.264193 TGCATTAGGCCCTACATATGAGG 59.736 47.826 10.38 11.40 43.89 3.86
321 336 3.519510 GCATTAGGCCCTACATATGAGGA 59.480 47.826 10.38 0.00 35.99 3.71
322 337 4.164988 GCATTAGGCCCTACATATGAGGAT 59.835 45.833 10.38 4.74 35.99 3.24
323 338 5.339530 GCATTAGGCCCTACATATGAGGATT 60.340 44.000 10.38 4.19 35.99 3.01
324 339 5.762179 TTAGGCCCTACATATGAGGATTG 57.238 43.478 10.38 1.52 35.99 2.67
327 342 3.054802 GGCCCTACATATGAGGATTGAGG 60.055 52.174 10.38 4.17 35.99 3.86
328 343 3.054802 GCCCTACATATGAGGATTGAGGG 60.055 52.174 10.38 12.87 44.52 4.30
330 345 4.469227 CCCTACATATGAGGATTGAGGGAG 59.531 50.000 10.38 0.00 44.48 4.30
340 361 3.259374 AGGATTGAGGGAGTATATGCGTG 59.741 47.826 0.00 0.00 0.00 5.34
358 409 2.993853 CTTGGAGGAGAGGGTGGC 59.006 66.667 0.00 0.00 0.00 5.01
364 415 3.056328 GGAGAGGGTGGCGTTTGC 61.056 66.667 0.00 0.00 41.71 3.68
371 422 0.320946 GGGTGGCGTTTGCACTACTA 60.321 55.000 0.00 0.00 45.35 1.82
372 423 1.515081 GGTGGCGTTTGCACTACTAA 58.485 50.000 0.00 0.00 45.35 2.24
462 513 2.057137 ATGTTGTGAACACAGGTGCT 57.943 45.000 7.67 0.00 45.50 4.40
636 687 2.953648 TGGACATTATTGCAGGCTGATG 59.046 45.455 20.86 14.72 0.00 3.07
685 736 4.383770 CCTCCGGTGGACATTATTTACAGT 60.384 45.833 17.99 0.00 0.00 3.55
757 808 5.304614 TGGTGTGGCTAGATCTTAATAGACC 59.695 44.000 0.00 4.95 31.99 3.85
787 838 2.288886 ACCAAGTCTTAGTCAAGCGACC 60.289 50.000 0.00 0.00 43.73 4.79
794 845 2.736144 TAGTCAAGCGACCGAACATT 57.264 45.000 0.00 0.00 43.73 2.71
856 908 5.614324 TGGATCTCCGTGAAAGATTACAT 57.386 39.130 0.00 0.00 39.43 2.29
901 955 6.709397 ACTTGGTTAAGTCTAGGTTTAGCAAC 59.291 38.462 5.72 0.00 43.53 4.17
966 1020 4.142687 CGAGCCATTTAAATTCAGGACGTT 60.143 41.667 7.13 0.00 0.00 3.99
1010 1066 1.542915 CACAAGAACAATGGAGCCTGG 59.457 52.381 0.00 0.00 0.00 4.45
1239 1304 2.571757 CTCCACTTCGGCGCTGTA 59.428 61.111 17.37 5.60 33.14 2.74
1511 1584 2.050077 CACTGACGAGTGCGCTCA 60.050 61.111 25.95 7.76 43.24 4.26
1512 1585 1.445066 CACTGACGAGTGCGCTCAT 60.445 57.895 25.95 12.45 43.24 2.90
1556 1641 1.902765 ATCGGCCAGCTGATCACACA 61.903 55.000 17.39 0.00 37.48 3.72
1566 1651 2.416747 CTGATCACACACACGGTCAAT 58.583 47.619 0.00 0.00 0.00 2.57
1690 1775 1.405821 CTGACCTCTACCCATCGTCAC 59.594 57.143 0.00 0.00 30.65 3.67
1765 1850 2.468670 GCGCGTGCCATTATGGACA 61.469 57.895 16.46 9.69 40.96 4.02
1818 1921 0.543174 AGAGCACGGAGGACCTTCTT 60.543 55.000 0.00 0.00 0.00 2.52
1820 1923 1.122019 AGCACGGAGGACCTTCTTGT 61.122 55.000 8.04 0.00 0.00 3.16
2089 2278 2.237392 AGCTACCTCAACTTGGTGATCC 59.763 50.000 0.00 0.00 38.42 3.36
2128 2317 3.055719 CGCCATTGCCGTTCCTGT 61.056 61.111 0.00 0.00 0.00 4.00
2166 2362 2.910360 CCATGCGAGGTGATGGGA 59.090 61.111 0.00 0.00 36.26 4.37
2202 2398 3.064931 GGGTACAAAGGTTCTCGTGAAG 58.935 50.000 0.00 0.00 32.15 3.02
2280 2476 2.092807 GGAGAGGTTCGAGGAGAGTAGT 60.093 54.545 0.00 0.00 0.00 2.73
2283 2482 0.099082 GGTTCGAGGAGAGTAGTGCG 59.901 60.000 0.00 0.00 0.00 5.34
2304 2512 1.299648 CGCCATGGACTTCAAGGGA 59.700 57.895 18.40 0.00 34.94 4.20
2334 2542 0.115745 AGTACCTTCCCTTCGGGTCA 59.884 55.000 0.00 0.00 44.74 4.02
2502 3246 1.016653 GCAGGAAGTCCAAGCTCGTC 61.017 60.000 0.00 0.00 38.89 4.20
2514 3258 4.552278 CTCGTCTTGCGTGCTACA 57.448 55.556 0.00 0.00 42.13 2.74
2518 3263 0.939577 CGTCTTGCGTGCTACACAGT 60.940 55.000 0.00 0.00 33.40 3.55
2530 3275 3.517500 TGCTACACAGTGTATCCCATTCA 59.482 43.478 13.97 2.02 31.66 2.57
2540 3285 8.686334 ACAGTGTATCCCATTCACAAATTAATC 58.314 33.333 0.00 0.00 33.58 1.75
2553 3298 8.492673 TCACAAATTAATCGATTTAGCTCACT 57.507 30.769 17.19 0.00 0.00 3.41
2561 3307 7.763172 AATCGATTTAGCTCACTTGTAGAAG 57.237 36.000 4.39 0.00 35.07 2.85
2564 3310 7.548097 TCGATTTAGCTCACTTGTAGAAGAAT 58.452 34.615 6.63 0.00 32.98 2.40
2565 3311 7.489435 TCGATTTAGCTCACTTGTAGAAGAATG 59.511 37.037 6.63 0.00 32.98 2.67
2577 3323 9.678260 ACTTGTAGAAGAATGATCAATTTAGCT 57.322 29.630 6.63 0.00 32.98 3.32
2580 3326 9.842775 TGTAGAAGAATGATCAATTTAGCTCAT 57.157 29.630 0.00 0.00 0.00 2.90
2584 3330 7.273320 AGAATGATCAATTTAGCTCATGTGG 57.727 36.000 0.00 0.00 0.00 4.17
2585 3331 4.906065 TGATCAATTTAGCTCATGTGGC 57.094 40.909 0.00 5.53 0.00 5.01
2586 3332 4.271661 TGATCAATTTAGCTCATGTGGCA 58.728 39.130 13.76 0.00 0.00 4.92
2588 3334 2.419673 TCAATTTAGCTCATGTGGCACG 59.580 45.455 13.77 0.00 0.00 5.34
2589 3335 1.382522 ATTTAGCTCATGTGGCACGG 58.617 50.000 13.77 7.98 0.00 4.94
2590 3336 0.676466 TTTAGCTCATGTGGCACGGG 60.676 55.000 13.77 7.59 0.00 5.28
2591 3337 3.680620 TAGCTCATGTGGCACGGGC 62.681 63.158 13.77 11.24 40.13 6.13
2605 3351 4.593864 GGGCACGCTCTCCGGATC 62.594 72.222 3.57 0.00 42.52 3.36
2606 3352 4.593864 GGCACGCTCTCCGGATCC 62.594 72.222 3.57 0.00 42.52 3.36
2607 3353 3.532155 GCACGCTCTCCGGATCCT 61.532 66.667 3.57 0.00 42.52 3.24
2608 3354 2.415010 CACGCTCTCCGGATCCTG 59.585 66.667 3.57 2.93 42.52 3.86
2610 3356 2.519541 CGCTCTCCGGATCCTGGA 60.520 66.667 19.86 19.86 0.00 3.86
2613 3359 0.757188 GCTCTCCGGATCCTGGAAGA 60.757 60.000 20.93 18.20 34.44 2.87
2615 3361 0.757188 TCTCCGGATCCTGGAAGAGC 60.757 60.000 20.93 0.00 34.44 4.09
2617 3363 2.427245 CCGGATCCTGGAAGAGCGT 61.427 63.158 15.18 0.00 34.07 5.07
2618 3364 1.227089 CGGATCCTGGAAGAGCGTG 60.227 63.158 10.75 0.00 34.07 5.34
2619 3365 1.901085 GGATCCTGGAAGAGCGTGT 59.099 57.895 3.84 0.00 34.07 4.49
2620 3366 1.112113 GGATCCTGGAAGAGCGTGTA 58.888 55.000 3.84 0.00 34.07 2.90
2622 3368 0.456221 ATCCTGGAAGAGCGTGTACG 59.544 55.000 0.00 0.00 38.37 3.67
2623 3369 0.892358 TCCTGGAAGAGCGTGTACGT 60.892 55.000 6.27 0.00 37.77 3.57
2624 3370 0.806868 CCTGGAAGAGCGTGTACGTA 59.193 55.000 6.27 0.00 37.77 3.57
2626 3372 2.159282 CCTGGAAGAGCGTGTACGTAAT 60.159 50.000 0.00 0.00 37.77 1.89
2628 3374 1.587034 GGAAGAGCGTGTACGTAATGC 59.413 52.381 0.00 5.41 42.22 3.56
2630 3376 2.579207 AGAGCGTGTACGTAATGCAT 57.421 45.000 17.99 0.00 42.22 3.96
2631 3377 3.703286 AGAGCGTGTACGTAATGCATA 57.297 42.857 17.99 0.00 42.22 3.14
2632 3378 4.238761 AGAGCGTGTACGTAATGCATAT 57.761 40.909 17.99 0.00 42.22 1.78
2633 3379 5.366829 AGAGCGTGTACGTAATGCATATA 57.633 39.130 17.99 0.00 42.22 0.86
2634 3380 5.950883 AGAGCGTGTACGTAATGCATATAT 58.049 37.500 17.99 0.00 42.22 0.86
2635 3381 6.028368 AGAGCGTGTACGTAATGCATATATC 58.972 40.000 17.99 10.14 42.22 1.63
2636 3382 5.705902 AGCGTGTACGTAATGCATATATCA 58.294 37.500 17.99 0.00 42.22 2.15
2637 3383 5.800438 AGCGTGTACGTAATGCATATATCAG 59.200 40.000 17.99 0.00 42.22 2.90
2638 3384 5.498700 GCGTGTACGTAATGCATATATCAGC 60.499 44.000 0.00 0.00 42.22 4.26
2639 3385 5.571357 CGTGTACGTAATGCATATATCAGCA 59.429 40.000 0.00 4.68 38.74 4.41
2641 3387 5.576774 TGTACGTAATGCATATATCAGCAGC 59.423 40.000 0.00 0.00 44.94 5.25
2642 3388 3.614176 ACGTAATGCATATATCAGCAGCG 59.386 43.478 0.00 15.27 44.94 5.18
2643 3389 3.614176 CGTAATGCATATATCAGCAGCGT 59.386 43.478 0.00 0.00 44.94 5.07
2645 3391 5.288472 CGTAATGCATATATCAGCAGCGTAA 59.712 40.000 0.00 0.00 44.94 3.18
2647 3393 4.990543 TGCATATATCAGCAGCGTAAAC 57.009 40.909 0.00 0.00 35.51 2.01
2651 3397 5.289675 GCATATATCAGCAGCGTAAACTAGG 59.710 44.000 0.00 0.00 0.00 3.02
2652 3398 1.941325 ATCAGCAGCGTAAACTAGGC 58.059 50.000 0.00 0.00 39.70 3.93
2653 3399 0.108329 TCAGCAGCGTAAACTAGGCC 60.108 55.000 0.00 0.00 40.23 5.19
2655 3401 0.613777 AGCAGCGTAAACTAGGCCTT 59.386 50.000 12.58 0.00 40.23 4.35
2659 3405 3.335579 CAGCGTAAACTAGGCCTTTCTT 58.664 45.455 12.58 4.17 40.23 2.52
2660 3406 4.501071 CAGCGTAAACTAGGCCTTTCTTA 58.499 43.478 12.58 3.05 40.23 2.10
2661 3407 5.116882 CAGCGTAAACTAGGCCTTTCTTAT 58.883 41.667 12.58 0.00 40.23 1.73
2662 3408 5.585047 CAGCGTAAACTAGGCCTTTCTTATT 59.415 40.000 12.58 0.61 40.23 1.40
2663 3409 6.093633 CAGCGTAAACTAGGCCTTTCTTATTT 59.906 38.462 12.58 5.73 40.23 1.40
2664 3410 6.315642 AGCGTAAACTAGGCCTTTCTTATTTC 59.684 38.462 12.58 0.00 40.23 2.17
2665 3411 6.315642 GCGTAAACTAGGCCTTTCTTATTTCT 59.684 38.462 12.58 0.00 33.72 2.52
2666 3412 7.493645 GCGTAAACTAGGCCTTTCTTATTTCTA 59.506 37.037 12.58 0.00 33.72 2.10
2667 3413 8.815189 CGTAAACTAGGCCTTTCTTATTTCTAC 58.185 37.037 12.58 0.00 0.00 2.59
2668 3414 9.662947 GTAAACTAGGCCTTTCTTATTTCTACA 57.337 33.333 12.58 0.00 0.00 2.74
2670 3416 8.794335 AACTAGGCCTTTCTTATTTCTACAAG 57.206 34.615 12.58 0.00 0.00 3.16
2671 3417 6.824196 ACTAGGCCTTTCTTATTTCTACAAGC 59.176 38.462 12.58 0.00 0.00 4.01
2672 3418 4.636206 AGGCCTTTCTTATTTCTACAAGCG 59.364 41.667 0.00 0.00 0.00 4.68
2673 3419 4.395231 GGCCTTTCTTATTTCTACAAGCGT 59.605 41.667 0.00 0.00 0.00 5.07
2675 3421 5.106673 GCCTTTCTTATTTCTACAAGCGTGT 60.107 40.000 10.83 10.83 42.09 4.49
2676 3422 6.307155 CCTTTCTTATTTCTACAAGCGTGTG 58.693 40.000 15.96 5.78 38.82 3.82
2677 3423 6.073222 CCTTTCTTATTTCTACAAGCGTGTGT 60.073 38.462 15.96 5.77 38.82 3.72
2683 3682 3.926821 TCTACAAGCGTGTGTATGTCA 57.073 42.857 15.96 0.00 38.82 3.58
2687 3686 4.404507 ACAAGCGTGTGTATGTCATTTC 57.595 40.909 3.91 0.00 36.31 2.17
2689 3688 5.234752 ACAAGCGTGTGTATGTCATTTCTA 58.765 37.500 3.91 0.00 36.31 2.10
2691 3690 5.779806 AGCGTGTGTATGTCATTTCTAAC 57.220 39.130 0.00 0.00 0.00 2.34
2692 3691 4.326278 AGCGTGTGTATGTCATTTCTAACG 59.674 41.667 0.00 0.00 0.00 3.18
2696 3695 6.531439 GTGTGTATGTCATTTCTAACGAACC 58.469 40.000 0.00 0.00 0.00 3.62
2700 3699 6.588756 TGTATGTCATTTCTAACGAACCACTC 59.411 38.462 0.00 0.00 0.00 3.51
2701 3700 4.312443 TGTCATTTCTAACGAACCACTCC 58.688 43.478 0.00 0.00 0.00 3.85
2704 3703 3.672767 TTTCTAACGAACCACTCCCTC 57.327 47.619 0.00 0.00 0.00 4.30
2706 3705 0.172803 CTAACGAACCACTCCCTCCG 59.827 60.000 0.00 0.00 0.00 4.63
2708 3707 1.813728 AACGAACCACTCCCTCCGTC 61.814 60.000 0.00 0.00 0.00 4.79
2710 3709 1.891616 GAACCACTCCCTCCGTCTC 59.108 63.158 0.00 0.00 0.00 3.36
2713 3712 0.629596 ACCACTCCCTCCGTCTCATA 59.370 55.000 0.00 0.00 0.00 2.15
2715 3714 2.320781 CCACTCCCTCCGTCTCATAAT 58.679 52.381 0.00 0.00 0.00 1.28
2716 3715 2.036475 CCACTCCCTCCGTCTCATAATG 59.964 54.545 0.00 0.00 0.00 1.90
2717 3716 2.695666 CACTCCCTCCGTCTCATAATGT 59.304 50.000 0.00 0.00 0.00 2.71
2719 3718 4.341235 CACTCCCTCCGTCTCATAATGTAA 59.659 45.833 0.00 0.00 0.00 2.41
2720 3719 4.585162 ACTCCCTCCGTCTCATAATGTAAG 59.415 45.833 0.00 0.00 0.00 2.34
2722 3721 5.394738 TCCCTCCGTCTCATAATGTAAGAT 58.605 41.667 0.00 0.00 0.00 2.40
2724 3723 5.011125 CCCTCCGTCTCATAATGTAAGATGT 59.989 44.000 0.00 0.00 0.00 3.06
2727 3726 7.495934 CCTCCGTCTCATAATGTAAGATGTTTT 59.504 37.037 0.00 0.00 0.00 2.43
2728 3727 8.786826 TCCGTCTCATAATGTAAGATGTTTTT 57.213 30.769 0.00 0.00 0.00 1.94
2758 3757 8.732746 ACTAGTGTAGTGTCAAAAGACATTTT 57.267 30.769 0.00 0.00 37.04 1.82
2761 3760 8.500753 AGTGTAGTGTCAAAAGACATTTTACA 57.499 30.769 1.30 8.44 36.47 2.41
2762 3761 9.120538 AGTGTAGTGTCAAAAGACATTTTACAT 57.879 29.630 16.21 8.62 36.47 2.29
2763 3762 9.730420 GTGTAGTGTCAAAAGACATTTTACATT 57.270 29.630 16.21 0.00 36.47 2.71
2776 3775 7.989741 AGACATTTTACATTATGAGACAGAGGG 59.010 37.037 0.00 0.00 0.00 4.30
2777 3776 7.861629 ACATTTTACATTATGAGACAGAGGGA 58.138 34.615 0.00 0.00 0.00 4.20
2778 3777 7.989741 ACATTTTACATTATGAGACAGAGGGAG 59.010 37.037 0.00 0.00 0.00 4.30
2780 3779 8.603898 TTTTACATTATGAGACAGAGGGAGTA 57.396 34.615 0.00 0.00 0.00 2.59
2781 3780 7.825331 TTACATTATGAGACAGAGGGAGTAG 57.175 40.000 0.00 0.00 0.00 2.57
2782 3781 6.019656 ACATTATGAGACAGAGGGAGTAGA 57.980 41.667 0.00 0.00 0.00 2.59
2783 3782 6.436027 ACATTATGAGACAGAGGGAGTAGAA 58.564 40.000 0.00 0.00 0.00 2.10
2784 3783 6.897966 ACATTATGAGACAGAGGGAGTAGAAA 59.102 38.462 0.00 0.00 0.00 2.52
2785 3784 7.400339 ACATTATGAGACAGAGGGAGTAGAAAA 59.600 37.037 0.00 0.00 0.00 2.29
2786 3785 5.930837 ATGAGACAGAGGGAGTAGAAAAG 57.069 43.478 0.00 0.00 0.00 2.27
2787 3786 4.742012 TGAGACAGAGGGAGTAGAAAAGT 58.258 43.478 0.00 0.00 0.00 2.66
2789 3788 3.259625 AGACAGAGGGAGTAGAAAAGTGC 59.740 47.826 0.00 0.00 0.00 4.40
2791 3790 3.007398 ACAGAGGGAGTAGAAAAGTGCTG 59.993 47.826 0.00 0.00 0.00 4.41
2792 3791 3.259374 CAGAGGGAGTAGAAAAGTGCTGA 59.741 47.826 0.00 0.00 0.00 4.26
2793 3792 4.081198 CAGAGGGAGTAGAAAAGTGCTGAT 60.081 45.833 0.00 0.00 0.00 2.90
2794 3793 4.534103 AGAGGGAGTAGAAAAGTGCTGATT 59.466 41.667 0.00 0.00 0.00 2.57
2795 3794 4.583871 AGGGAGTAGAAAAGTGCTGATTG 58.416 43.478 0.00 0.00 0.00 2.67
2796 3795 4.287067 AGGGAGTAGAAAAGTGCTGATTGA 59.713 41.667 0.00 0.00 0.00 2.57
2797 3796 5.003804 GGGAGTAGAAAAGTGCTGATTGAA 58.996 41.667 0.00 0.00 0.00 2.69
2799 3798 6.016276 GGGAGTAGAAAAGTGCTGATTGAAAA 60.016 38.462 0.00 0.00 0.00 2.29
2800 3799 6.858478 GGAGTAGAAAAGTGCTGATTGAAAAC 59.142 38.462 0.00 0.00 0.00 2.43
2801 3800 7.333528 AGTAGAAAAGTGCTGATTGAAAACA 57.666 32.000 0.00 0.00 0.00 2.83
2803 3802 5.036737 AGAAAAGTGCTGATTGAAAACACG 58.963 37.500 0.00 0.00 36.38 4.49
2804 3803 4.630894 AAAGTGCTGATTGAAAACACGA 57.369 36.364 0.00 0.00 36.38 4.35
2806 3805 2.290641 AGTGCTGATTGAAAACACGACC 59.709 45.455 0.00 0.00 36.38 4.79
2807 3806 1.606668 TGCTGATTGAAAACACGACCC 59.393 47.619 0.00 0.00 0.00 4.46
2808 3807 1.606668 GCTGATTGAAAACACGACCCA 59.393 47.619 0.00 0.00 0.00 4.51
2809 3808 2.034053 GCTGATTGAAAACACGACCCAA 59.966 45.455 0.00 0.00 0.00 4.12
2812 3811 5.073311 TGATTGAAAACACGACCCAAAAA 57.927 34.783 0.00 0.00 0.00 1.94
2826 3825 4.911901 AAAAAGGCTACCACGGCA 57.088 50.000 0.00 0.00 0.00 5.69
2827 3826 2.337361 AAAAAGGCTACCACGGCAC 58.663 52.632 0.00 0.00 0.00 5.01
2841 3840 2.740826 GCACGCTGCTACGGGAAA 60.741 61.111 5.35 0.00 39.34 3.13
2842 3841 2.322081 GCACGCTGCTACGGGAAAA 61.322 57.895 5.35 0.00 39.34 2.29
2843 3842 1.495951 CACGCTGCTACGGGAAAAC 59.504 57.895 0.00 0.00 39.34 2.43
2844 3843 1.070105 ACGCTGCTACGGGAAAACA 59.930 52.632 0.00 0.00 37.37 2.83
2845 3844 1.226030 ACGCTGCTACGGGAAAACAC 61.226 55.000 0.00 0.00 37.37 3.32
2846 3845 1.225376 CGCTGCTACGGGAAAACACA 61.225 55.000 0.00 0.00 0.00 3.72
2847 3846 0.237498 GCTGCTACGGGAAAACACAC 59.763 55.000 0.00 0.00 0.00 3.82
2848 3847 0.872388 CTGCTACGGGAAAACACACC 59.128 55.000 0.00 0.00 0.00 4.16
2854 4824 3.286329 ACGGGAAAACACACCTTACTT 57.714 42.857 0.00 0.00 0.00 2.24
2858 4828 5.829391 ACGGGAAAACACACCTTACTTAATT 59.171 36.000 0.00 0.00 0.00 1.40
2860 4830 7.173735 ACGGGAAAACACACCTTACTTAATTAG 59.826 37.037 0.00 0.00 0.00 1.73
2862 4832 8.294577 GGGAAAACACACCTTACTTAATTAGTG 58.705 37.037 0.00 0.00 37.73 2.74
2885 4855 9.389755 AGTGTGTTTTTATAAGCCAAATGTTTT 57.610 25.926 0.00 0.00 0.00 2.43
2886 4856 9.995957 GTGTGTTTTTATAAGCCAAATGTTTTT 57.004 25.926 0.00 0.00 0.00 1.94
2904 4910 3.979101 TTTTTCCCGGGTATACGACTT 57.021 42.857 22.86 0.00 35.47 3.01
2908 4914 5.705609 TTTCCCGGGTATACGACTTATAC 57.294 43.478 22.86 1.39 41.39 1.47
2911 4917 4.761739 TCCCGGGTATACGACTTATACAAG 59.238 45.833 22.86 4.57 43.21 3.16
2914 4920 5.009010 CCGGGTATACGACTTATACAAGTGT 59.991 44.000 10.34 0.00 45.18 3.55
2915 4921 6.204688 CCGGGTATACGACTTATACAAGTGTA 59.795 42.308 10.34 0.00 45.18 2.90
2917 4923 7.800380 CGGGTATACGACTTATACAAGTGTAAG 59.200 40.741 13.13 13.13 45.18 2.34
2920 4926 4.418392 ACGACTTATACAAGTGTAAGCCG 58.582 43.478 18.38 18.38 45.18 5.52
2922 4928 4.733887 CGACTTATACAAGTGTAAGCCGAG 59.266 45.833 16.18 4.27 45.18 4.63
2925 4931 6.558909 ACTTATACAAGTGTAAGCCGAGTAC 58.441 40.000 14.24 0.00 43.50 2.73
2927 4933 3.572604 ACAAGTGTAAGCCGAGTACTC 57.427 47.619 13.18 13.18 0.00 2.59
2929 4935 3.573110 ACAAGTGTAAGCCGAGTACTCTT 59.427 43.478 20.34 10.69 36.31 2.85
2930 4936 4.038883 ACAAGTGTAAGCCGAGTACTCTTT 59.961 41.667 20.34 13.59 34.62 2.52
2932 4938 3.825014 AGTGTAAGCCGAGTACTCTTTGA 59.175 43.478 20.34 0.00 0.00 2.69
2940 4946 5.355910 AGCCGAGTACTCTTTGAAAAACAAA 59.644 36.000 20.34 0.00 44.79 2.83
2941 4947 5.454554 GCCGAGTACTCTTTGAAAAACAAAC 59.545 40.000 20.34 0.00 42.57 2.93
2943 4949 7.024768 CCGAGTACTCTTTGAAAAACAAACAA 58.975 34.615 20.34 0.00 42.57 2.83
2944 4950 7.007995 CCGAGTACTCTTTGAAAAACAAACAAC 59.992 37.037 20.34 0.00 42.57 3.32
2945 4951 7.535940 CGAGTACTCTTTGAAAAACAAACAACA 59.464 33.333 20.34 0.00 42.57 3.33
2946 4952 9.187455 GAGTACTCTTTGAAAAACAAACAACAA 57.813 29.630 15.91 0.00 42.57 2.83
2947 4953 8.974408 AGTACTCTTTGAAAAACAAACAACAAC 58.026 29.630 0.00 0.00 42.57 3.32
2949 4955 6.074034 ACTCTTTGAAAAACAAACAACAACGG 60.074 34.615 0.00 0.00 42.57 4.44
2951 4957 3.390135 TGAAAAACAAACAACAACGGCA 58.610 36.364 0.00 0.00 0.00 5.69
2952 4958 3.430218 TGAAAAACAAACAACAACGGCAG 59.570 39.130 0.00 0.00 0.00 4.85
2954 4960 0.459411 AACAAACAACAACGGCAGGC 60.459 50.000 0.00 0.00 0.00 4.85
2955 4961 1.591327 CAAACAACAACGGCAGGCC 60.591 57.895 0.00 0.00 0.00 5.19
2956 4962 2.791868 AAACAACAACGGCAGGCCC 61.792 57.895 0.00 0.00 0.00 5.80
2958 4964 4.974721 CAACAACGGCAGGCCCCT 62.975 66.667 0.00 0.00 0.00 4.79
2959 4965 4.660938 AACAACGGCAGGCCCCTC 62.661 66.667 0.00 0.00 0.00 4.30
2966 4972 4.176752 GCAGGCCCCTCGGGTTAG 62.177 72.222 0.00 0.00 46.51 2.34
2967 4973 2.687566 CAGGCCCCTCGGGTTAGT 60.688 66.667 0.00 0.00 46.51 2.24
2969 4975 1.993948 AGGCCCCTCGGGTTAGTTC 60.994 63.158 0.00 0.00 46.51 3.01
2970 4976 2.588439 GCCCCTCGGGTTAGTTCC 59.412 66.667 0.55 0.00 46.51 3.62
2971 4977 3.040206 GCCCCTCGGGTTAGTTCCC 62.040 68.421 0.55 0.00 46.51 3.97
2972 4978 1.306739 CCCCTCGGGTTAGTTCCCT 60.307 63.158 0.55 0.00 44.95 4.20
2973 4979 1.623542 CCCCTCGGGTTAGTTCCCTG 61.624 65.000 0.55 0.00 44.95 4.45
2974 4980 0.908180 CCCTCGGGTTAGTTCCCTGT 60.908 60.000 0.00 0.00 44.95 4.00
2975 4981 1.620524 CCCTCGGGTTAGTTCCCTGTA 60.621 57.143 0.00 0.00 44.95 2.74
2976 4982 2.181975 CCTCGGGTTAGTTCCCTGTAA 58.818 52.381 0.25 0.00 44.95 2.41
2978 4984 1.551883 TCGGGTTAGTTCCCTGTAAGC 59.448 52.381 0.25 0.00 44.95 3.09
2979 4985 1.406477 CGGGTTAGTTCCCTGTAAGCC 60.406 57.143 0.25 0.00 44.95 4.35
2981 4987 1.551883 GGTTAGTTCCCTGTAAGCCGA 59.448 52.381 0.00 0.00 0.00 5.54
2982 4988 2.418334 GGTTAGTTCCCTGTAAGCCGAG 60.418 54.545 0.00 0.00 0.00 4.63
2983 4989 2.226962 TAGTTCCCTGTAAGCCGAGT 57.773 50.000 0.00 0.00 0.00 4.18
2985 4991 1.823610 AGTTCCCTGTAAGCCGAGTAC 59.176 52.381 0.00 0.00 0.00 2.73
2986 4992 0.813184 TTCCCTGTAAGCCGAGTACG 59.187 55.000 0.00 0.00 39.43 3.67
2987 4993 0.322816 TCCCTGTAAGCCGAGTACGT 60.323 55.000 0.00 0.00 37.88 3.57
2988 4994 0.100146 CCCTGTAAGCCGAGTACGTC 59.900 60.000 0.00 0.00 37.88 4.34
2989 4995 0.806868 CCTGTAAGCCGAGTACGTCA 59.193 55.000 0.00 0.00 37.88 4.35
2990 4996 1.404391 CCTGTAAGCCGAGTACGTCAT 59.596 52.381 0.00 0.00 37.88 3.06
2991 4997 2.451132 CTGTAAGCCGAGTACGTCATG 58.549 52.381 0.00 0.00 37.88 3.07
2992 4998 2.086094 TGTAAGCCGAGTACGTCATGA 58.914 47.619 0.00 0.00 37.88 3.07
2994 5000 2.736144 AAGCCGAGTACGTCATGAAA 57.264 45.000 0.00 0.00 37.88 2.69
2995 5001 2.736144 AGCCGAGTACGTCATGAAAA 57.264 45.000 0.00 0.00 37.88 2.29
2997 5003 2.063266 GCCGAGTACGTCATGAAAACA 58.937 47.619 0.00 0.00 37.88 2.83
2998 5004 2.159881 GCCGAGTACGTCATGAAAACAC 60.160 50.000 0.00 0.00 37.88 3.32
2999 5005 3.054166 CCGAGTACGTCATGAAAACACA 58.946 45.455 0.00 0.00 37.88 3.72
3000 5006 3.121126 CCGAGTACGTCATGAAAACACAC 60.121 47.826 0.00 0.00 37.88 3.82
3001 5007 3.487942 CGAGTACGTCATGAAAACACACA 59.512 43.478 0.00 0.00 34.56 3.72
3002 5008 4.026393 CGAGTACGTCATGAAAACACACAA 60.026 41.667 0.00 0.00 34.56 3.33
3004 5010 6.371809 AGTACGTCATGAAAACACACAAAT 57.628 33.333 0.00 0.00 0.00 2.32
3005 5011 6.198687 AGTACGTCATGAAAACACACAAATG 58.801 36.000 0.00 0.00 0.00 2.32
3006 5012 5.242069 ACGTCATGAAAACACACAAATGA 57.758 34.783 0.00 0.00 0.00 2.57
3007 5013 5.830912 ACGTCATGAAAACACACAAATGAT 58.169 33.333 0.00 0.00 0.00 2.45
3008 5014 6.964908 ACGTCATGAAAACACACAAATGATA 58.035 32.000 0.00 0.00 0.00 2.15
3009 5015 7.077605 ACGTCATGAAAACACACAAATGATAG 58.922 34.615 0.00 0.00 0.00 2.08
3010 5016 7.041440 ACGTCATGAAAACACACAAATGATAGA 60.041 33.333 0.00 0.00 0.00 1.98
3011 5017 7.269084 CGTCATGAAAACACACAAATGATAGAC 59.731 37.037 0.00 0.00 0.00 2.59
3016 5022 4.970662 ACACACAAATGATAGACATGGC 57.029 40.909 0.00 0.00 39.39 4.40
3017 5023 3.696051 ACACACAAATGATAGACATGGCC 59.304 43.478 0.00 0.00 39.39 5.36
3018 5024 3.695556 CACACAAATGATAGACATGGCCA 59.304 43.478 8.56 8.56 39.39 5.36
3020 5026 4.957954 ACACAAATGATAGACATGGCCAAT 59.042 37.500 10.96 0.00 39.39 3.16
3021 5027 5.163488 ACACAAATGATAGACATGGCCAATG 60.163 40.000 10.96 11.68 42.48 2.82
3022 5028 5.068067 CACAAATGATAGACATGGCCAATGA 59.932 40.000 10.96 0.00 38.72 2.57
3023 5029 5.657745 ACAAATGATAGACATGGCCAATGAA 59.342 36.000 10.96 0.00 38.72 2.57
3024 5030 6.183360 ACAAATGATAGACATGGCCAATGAAG 60.183 38.462 10.96 0.00 38.72 3.02
3025 5031 4.776435 TGATAGACATGGCCAATGAAGA 57.224 40.909 10.96 0.00 38.72 2.87
3026 5032 4.454678 TGATAGACATGGCCAATGAAGAC 58.545 43.478 10.96 0.20 38.72 3.01
3027 5033 2.885135 AGACATGGCCAATGAAGACA 57.115 45.000 10.96 0.00 38.72 3.41
3028 5034 3.377253 AGACATGGCCAATGAAGACAT 57.623 42.857 10.96 0.00 38.72 3.06
3029 5035 3.285484 AGACATGGCCAATGAAGACATC 58.715 45.455 10.96 1.65 38.72 3.06
3039 5045 1.338107 TGAAGACATCAGTGGGTCGT 58.662 50.000 9.30 6.99 39.01 4.34
3040 5046 1.272490 TGAAGACATCAGTGGGTCGTC 59.728 52.381 17.92 17.92 41.11 4.20
3041 5047 0.243907 AAGACATCAGTGGGTCGTCG 59.756 55.000 9.30 0.00 39.01 5.12
3042 5048 0.608308 AGACATCAGTGGGTCGTCGA 60.608 55.000 9.30 0.00 39.01 4.20
3043 5049 0.456221 GACATCAGTGGGTCGTCGAT 59.544 55.000 0.00 0.00 0.00 3.59
3045 5051 0.528466 CATCAGTGGGTCGTCGATGG 60.528 60.000 4.48 0.00 31.80 3.51
3046 5052 2.298158 ATCAGTGGGTCGTCGATGGC 62.298 60.000 4.48 1.86 0.00 4.40
3047 5053 4.129737 AGTGGGTCGTCGATGGCG 62.130 66.667 4.48 0.00 39.35 5.69
3048 5054 4.124351 GTGGGTCGTCGATGGCGA 62.124 66.667 4.48 0.00 45.71 5.54
3130 5474 3.597728 CTCCGAGGCCGCCTAGTC 61.598 72.222 13.29 0.00 31.76 2.59
3140 5484 4.971125 GCCTAGTCGCCCGCATCC 62.971 72.222 0.00 0.00 0.00 3.51
3141 5485 4.301027 CCTAGTCGCCCGCATCCC 62.301 72.222 0.00 0.00 0.00 3.85
3142 5486 4.301027 CTAGTCGCCCGCATCCCC 62.301 72.222 0.00 0.00 0.00 4.81
3186 5530 4.873129 CGACGACCCCTGGCGATG 62.873 72.222 0.00 0.00 0.00 3.84
3227 5571 3.790437 CCTGTCCCGGCTGCATCT 61.790 66.667 0.50 0.00 0.00 2.90
3228 5572 2.202987 CTGTCCCGGCTGCATCTC 60.203 66.667 0.50 0.00 0.00 2.75
3229 5573 3.746949 CTGTCCCGGCTGCATCTCC 62.747 68.421 0.50 0.00 0.00 3.71
3230 5574 4.899239 GTCCCGGCTGCATCTCCG 62.899 72.222 13.30 13.30 44.89 4.63
3236 5580 3.934684 GCTGCATCTCCGCGCTTC 61.935 66.667 5.56 0.00 33.35 3.86
3237 5581 3.267860 CTGCATCTCCGCGCTTCC 61.268 66.667 5.56 0.00 33.35 3.46
3248 5592 4.845580 CGCTTCCGCTGGGCTGAT 62.846 66.667 0.00 0.00 0.00 2.90
3249 5593 2.439156 GCTTCCGCTGGGCTGATT 60.439 61.111 0.00 0.00 0.00 2.57
3250 5594 2.768492 GCTTCCGCTGGGCTGATTG 61.768 63.158 0.00 0.00 0.00 2.67
3251 5595 2.751436 TTCCGCTGGGCTGATTGC 60.751 61.111 0.00 0.00 41.94 3.56
3260 5604 3.918220 GCTGATTGCGCCGACGAG 61.918 66.667 4.18 0.00 43.93 4.18
3261 5605 3.918220 CTGATTGCGCCGACGAGC 61.918 66.667 4.18 1.95 43.93 5.03
3270 5614 4.452733 CCGACGAGCCACCCTTCC 62.453 72.222 0.00 0.00 0.00 3.46
3271 5615 4.452733 CGACGAGCCACCCTTCCC 62.453 72.222 0.00 0.00 0.00 3.97
3272 5616 4.097361 GACGAGCCACCCTTCCCC 62.097 72.222 0.00 0.00 0.00 4.81
3342 5686 4.715130 AGTCCTGCCGGGCTGGTA 62.715 66.667 34.97 22.91 45.58 3.25
3343 5687 3.712907 GTCCTGCCGGGCTGGTAA 61.713 66.667 34.97 20.37 45.76 2.85
3344 5688 3.712907 TCCTGCCGGGCTGGTAAC 61.713 66.667 34.97 1.85 45.76 2.50
3345 5689 4.796495 CCTGCCGGGCTGGTAACC 62.796 72.222 30.64 0.00 41.68 2.85
3346 5690 4.796495 CTGCCGGGCTGGTAACCC 62.796 72.222 21.46 0.00 44.63 4.11
3403 5747 4.133796 GCCCCATGCGCAAACCTC 62.134 66.667 17.11 0.00 0.00 3.85
3404 5748 3.814268 CCCCATGCGCAAACCTCG 61.814 66.667 17.11 0.00 0.00 4.63
3411 5755 4.735132 CGCAAACCTCGCCCTCGA 62.735 66.667 0.00 0.00 43.28 4.04
3419 5763 2.676822 TCGCCCTCGAGCTTGTCT 60.677 61.111 6.99 0.00 40.21 3.41
3420 5764 2.202676 CGCCCTCGAGCTTGTCTC 60.203 66.667 6.99 0.00 38.10 3.36
3427 5771 4.816990 GAGCTTGTCTCGGGCTAC 57.183 61.111 0.00 0.00 36.37 3.58
3428 5772 1.142097 GAGCTTGTCTCGGGCTACC 59.858 63.158 0.00 0.00 36.37 3.18
3440 5784 4.096003 GCTACCGGGCTGCAAGGA 62.096 66.667 17.50 3.11 0.00 3.36
3441 5785 2.187946 CTACCGGGCTGCAAGGAG 59.812 66.667 17.50 8.13 0.00 3.69
3442 5786 4.096003 TACCGGGCTGCAAGGAGC 62.096 66.667 17.50 4.88 45.96 4.70
3493 5837 2.284699 CCTCCGGTCTTGGGGAGT 60.285 66.667 0.00 0.00 46.83 3.85
3495 5839 1.043673 CCTCCGGTCTTGGGGAGTAG 61.044 65.000 0.00 0.00 46.83 2.57
3496 5840 0.324460 CTCCGGTCTTGGGGAGTAGT 60.324 60.000 0.00 0.00 43.91 2.73
3497 5841 0.324091 TCCGGTCTTGGGGAGTAGTC 60.324 60.000 0.00 0.00 0.00 2.59
3499 5843 1.664321 CGGTCTTGGGGAGTAGTCGG 61.664 65.000 0.00 0.00 0.00 4.79
3501 5845 1.684734 TCTTGGGGAGTAGTCGGCC 60.685 63.158 0.00 0.00 0.00 6.13
3505 5849 3.902086 GGGAGTAGTCGGCCGCTC 61.902 72.222 23.51 20.66 0.00 5.03
3506 5850 3.902086 GGAGTAGTCGGCCGCTCC 61.902 72.222 26.91 26.91 40.39 4.70
3538 5882 4.052229 AGGTTCGTCCTGGCGTCG 62.052 66.667 9.66 5.25 46.19 5.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 4.851214 AGAGCCCCGCCTCCTCTC 62.851 72.222 0.00 0.00 30.46 3.20
56 57 7.282675 GGAGGGAGTAGCTAATTTTTCCTTTAC 59.717 40.741 0.00 0.00 0.00 2.01
189 194 6.400568 GTTACCTAATGCCGTGCCTATAATA 58.599 40.000 0.00 0.00 0.00 0.98
192 197 3.305539 CGTTACCTAATGCCGTGCCTATA 60.306 47.826 0.00 0.00 0.00 1.31
193 198 2.547218 CGTTACCTAATGCCGTGCCTAT 60.547 50.000 0.00 0.00 0.00 2.57
197 202 0.460635 TCCGTTACCTAATGCCGTGC 60.461 55.000 0.00 0.00 0.00 5.34
201 206 1.544759 CCCCATCCGTTACCTAATGCC 60.545 57.143 0.00 0.00 0.00 4.40
227 232 6.318648 ACATGCAAGTTAGACTCTCACAAAAA 59.681 34.615 0.00 0.00 0.00 1.94
242 247 9.293404 AGAGCAATAATATATGACATGCAAGTT 57.707 29.630 10.78 0.00 34.89 2.66
243 248 8.859236 AGAGCAATAATATATGACATGCAAGT 57.141 30.769 10.78 0.00 34.89 3.16
274 289 4.748102 TGTTTCGAGACTAACATTGACCAC 59.252 41.667 7.68 0.00 29.82 4.16
277 292 5.107104 TGCATGTTTCGAGACTAACATTGAC 60.107 40.000 9.87 4.93 41.65 3.18
292 307 3.287222 TGTAGGGCCTAATGCATGTTTC 58.713 45.455 16.44 0.00 43.89 2.78
296 311 4.847198 TCATATGTAGGGCCTAATGCATG 58.153 43.478 16.44 15.38 43.89 4.06
310 325 9.426534 CATATACTCCCTCAATCCTCATATGTA 57.573 37.037 1.90 0.00 0.00 2.29
311 326 7.147585 GCATATACTCCCTCAATCCTCATATGT 60.148 40.741 1.90 0.00 0.00 2.29
312 327 7.215789 GCATATACTCCCTCAATCCTCATATG 58.784 42.308 0.00 0.00 0.00 1.78
313 328 6.041409 CGCATATACTCCCTCAATCCTCATAT 59.959 42.308 0.00 0.00 0.00 1.78
314 329 5.360999 CGCATATACTCCCTCAATCCTCATA 59.639 44.000 0.00 0.00 0.00 2.15
315 330 4.161189 CGCATATACTCCCTCAATCCTCAT 59.839 45.833 0.00 0.00 0.00 2.90
316 331 3.511540 CGCATATACTCCCTCAATCCTCA 59.488 47.826 0.00 0.00 0.00 3.86
317 332 3.511934 ACGCATATACTCCCTCAATCCTC 59.488 47.826 0.00 0.00 0.00 3.71
318 333 3.259374 CACGCATATACTCCCTCAATCCT 59.741 47.826 0.00 0.00 0.00 3.24
319 334 3.589988 CACGCATATACTCCCTCAATCC 58.410 50.000 0.00 0.00 0.00 3.01
320 335 2.996621 GCACGCATATACTCCCTCAATC 59.003 50.000 0.00 0.00 0.00 2.67
321 336 2.634940 AGCACGCATATACTCCCTCAAT 59.365 45.455 0.00 0.00 0.00 2.57
322 337 2.039418 AGCACGCATATACTCCCTCAA 58.961 47.619 0.00 0.00 0.00 3.02
323 338 1.704641 AGCACGCATATACTCCCTCA 58.295 50.000 0.00 0.00 0.00 3.86
324 339 2.408050 CAAGCACGCATATACTCCCTC 58.592 52.381 0.00 0.00 0.00 4.30
327 342 2.408050 CTCCAAGCACGCATATACTCC 58.592 52.381 0.00 0.00 0.00 3.85
328 343 2.035961 TCCTCCAAGCACGCATATACTC 59.964 50.000 0.00 0.00 0.00 2.59
330 345 2.035961 TCTCCTCCAAGCACGCATATAC 59.964 50.000 0.00 0.00 0.00 1.47
340 361 2.993853 CCACCCTCTCCTCCAAGC 59.006 66.667 0.00 0.00 0.00 4.01
358 409 2.416547 AGCAGCATTAGTAGTGCAAACG 59.583 45.455 18.61 6.29 44.87 3.60
364 415 6.206498 TGTTCGTATAGCAGCATTAGTAGTG 58.794 40.000 0.00 0.00 0.00 2.74
371 422 6.538742 AGTGTTATTGTTCGTATAGCAGCATT 59.461 34.615 0.00 0.00 0.00 3.56
372 423 6.049149 AGTGTTATTGTTCGTATAGCAGCAT 58.951 36.000 0.00 0.00 0.00 3.79
450 501 2.766313 TGTATGACAGCACCTGTGTTC 58.234 47.619 2.12 0.00 45.44 3.18
455 506 2.558378 CCTGATGTATGACAGCACCTG 58.442 52.381 0.00 0.00 39.86 4.00
462 513 1.281577 TGCTTGCCCTGATGTATGACA 59.718 47.619 0.00 0.00 0.00 3.58
636 687 4.942852 AGTCCATGATCTTTCTCATCGTC 58.057 43.478 0.00 0.00 33.59 4.20
685 736 6.280855 TGAAACAATCGGATGTCTAGAAGA 57.719 37.500 0.00 0.00 31.81 2.87
834 886 5.128663 TCATGTAATCTTTCACGGAGATCCA 59.871 40.000 0.00 0.00 32.86 3.41
918 972 0.610174 TGGATCGCAGAGAGCTGTTT 59.390 50.000 0.00 0.00 43.63 2.83
938 992 4.511454 CCTGAATTTAAATGGCTCGATCGA 59.489 41.667 18.32 18.32 0.00 3.59
966 1020 5.633601 GTGTGTCTCTTTACATCGAATGACA 59.366 40.000 0.00 0.00 0.00 3.58
1527 1612 1.003118 AGCTGGCCGATTTCAACTACA 59.997 47.619 0.00 0.00 0.00 2.74
1530 1615 0.036732 TCAGCTGGCCGATTTCAACT 59.963 50.000 15.13 0.00 0.00 3.16
1556 1641 1.428448 CACGATGTCATTGACCGTGT 58.572 50.000 26.69 15.52 43.62 4.49
1765 1850 2.709475 GCGCTCGCGGATGAAATT 59.291 55.556 13.56 0.00 40.19 1.82
1818 1921 3.170672 ACCCTCAGCAGCACCACA 61.171 61.111 0.00 0.00 0.00 4.17
1820 1923 4.648626 GCACCCTCAGCAGCACCA 62.649 66.667 0.00 0.00 0.00 4.17
1866 1969 1.257750 TGATGTCGGTGGTGAGGGAG 61.258 60.000 0.00 0.00 0.00 4.30
1867 1970 0.617535 ATGATGTCGGTGGTGAGGGA 60.618 55.000 0.00 0.00 0.00 4.20
1868 1971 0.179073 GATGATGTCGGTGGTGAGGG 60.179 60.000 0.00 0.00 0.00 4.30
2115 2304 2.625823 CGGCAACAGGAACGGCAAT 61.626 57.895 0.00 0.00 0.00 3.56
2221 2417 2.831742 CTCCCAGTAGGCGCCGTA 60.832 66.667 23.20 11.25 34.51 4.02
2283 2482 2.361104 TTGAAGTCCATGGCGGCC 60.361 61.111 13.32 13.32 33.14 6.13
2304 2512 0.896226 GAAGGTACTCGAAGTGGCCT 59.104 55.000 3.32 0.00 38.49 5.19
2502 3246 1.778334 TACACTGTGTAGCACGCAAG 58.222 50.000 16.26 3.48 38.24 4.01
2508 3252 3.517500 TGAATGGGATACACTGTGTAGCA 59.482 43.478 30.18 16.18 40.72 3.49
2514 3258 8.593945 ATTAATTTGTGAATGGGATACACTGT 57.406 30.769 0.00 0.00 35.83 3.55
2518 3263 8.690203 ATCGATTAATTTGTGAATGGGATACA 57.310 30.769 0.00 0.00 39.74 2.29
2530 3275 8.730680 ACAAGTGAGCTAAATCGATTAATTTGT 58.269 29.630 11.83 10.41 31.50 2.83
2540 3285 7.489435 TCATTCTTCTACAAGTGAGCTAAATCG 59.511 37.037 0.00 0.00 0.00 3.34
2553 3298 9.671279 TGAGCTAAATTGATCATTCTTCTACAA 57.329 29.630 0.00 0.00 0.00 2.41
2561 3307 5.919141 GCCACATGAGCTAAATTGATCATTC 59.081 40.000 0.00 0.00 40.54 2.67
2564 3310 4.096833 GTGCCACATGAGCTAAATTGATCA 59.903 41.667 0.00 0.00 36.77 2.92
2565 3311 4.604976 GTGCCACATGAGCTAAATTGATC 58.395 43.478 0.00 0.00 0.00 2.92
2588 3334 4.593864 GATCCGGAGAGCGTGCCC 62.594 72.222 11.34 0.00 0.00 5.36
2589 3335 4.593864 GGATCCGGAGAGCGTGCC 62.594 72.222 11.34 0.00 0.00 5.01
2590 3336 3.532155 AGGATCCGGAGAGCGTGC 61.532 66.667 11.34 0.00 0.00 5.34
2591 3337 2.415010 CAGGATCCGGAGAGCGTG 59.585 66.667 11.34 9.97 37.87 5.34
2592 3338 2.835431 CCAGGATCCGGAGAGCGT 60.835 66.667 14.13 0.29 0.00 5.07
2593 3339 2.081425 CTTCCAGGATCCGGAGAGCG 62.081 65.000 20.01 0.00 33.01 5.03
2594 3340 0.757188 TCTTCCAGGATCCGGAGAGC 60.757 60.000 20.01 1.22 33.01 4.09
2596 3342 0.757188 GCTCTTCCAGGATCCGGAGA 60.757 60.000 20.01 17.80 33.01 3.71
2597 3343 1.745264 GCTCTTCCAGGATCCGGAG 59.255 63.158 20.01 16.52 33.01 4.63
2598 3344 2.127869 CGCTCTTCCAGGATCCGGA 61.128 63.158 14.13 16.37 0.00 5.14
2599 3345 2.419198 CGCTCTTCCAGGATCCGG 59.581 66.667 14.38 14.38 0.00 5.14
2600 3346 1.227089 CACGCTCTTCCAGGATCCG 60.227 63.158 5.98 1.07 0.00 4.18
2601 3347 1.112113 TACACGCTCTTCCAGGATCC 58.888 55.000 2.48 2.48 0.00 3.36
2603 3349 0.456221 CGTACACGCTCTTCCAGGAT 59.544 55.000 0.00 0.00 0.00 3.24
2605 3351 0.806868 TACGTACACGCTCTTCCAGG 59.193 55.000 0.85 0.00 44.43 4.45
2606 3352 2.624316 TTACGTACACGCTCTTCCAG 57.376 50.000 0.85 0.00 44.43 3.86
2607 3353 2.871133 CATTACGTACACGCTCTTCCA 58.129 47.619 0.85 0.00 44.43 3.53
2608 3354 1.587034 GCATTACGTACACGCTCTTCC 59.413 52.381 0.85 0.00 44.43 3.46
2610 3356 2.357327 TGCATTACGTACACGCTCTT 57.643 45.000 0.85 0.00 44.43 2.85
2613 3359 5.705902 TGATATATGCATTACGTACACGCT 58.294 37.500 3.54 0.00 44.43 5.07
2615 3361 5.571357 TGCTGATATATGCATTACGTACACG 59.429 40.000 3.54 0.00 38.67 4.49
2617 3363 5.576774 GCTGCTGATATATGCATTACGTACA 59.423 40.000 3.54 0.00 38.59 2.90
2618 3364 5.275927 CGCTGCTGATATATGCATTACGTAC 60.276 44.000 3.54 0.00 38.59 3.67
2619 3365 4.798387 CGCTGCTGATATATGCATTACGTA 59.202 41.667 3.54 0.00 38.59 3.57
2620 3366 3.614176 CGCTGCTGATATATGCATTACGT 59.386 43.478 3.54 0.00 38.59 3.57
2622 3368 6.647212 TTACGCTGCTGATATATGCATTAC 57.353 37.500 3.54 0.00 38.59 1.89
2623 3369 6.873605 AGTTTACGCTGCTGATATATGCATTA 59.126 34.615 3.54 0.00 38.59 1.90
2624 3370 5.702670 AGTTTACGCTGCTGATATATGCATT 59.297 36.000 3.54 0.00 38.59 3.56
2626 3372 4.631131 AGTTTACGCTGCTGATATATGCA 58.369 39.130 0.00 0.00 37.63 3.96
2628 3374 5.289675 GCCTAGTTTACGCTGCTGATATATG 59.710 44.000 0.00 0.00 0.00 1.78
2630 3376 4.321750 GGCCTAGTTTACGCTGCTGATATA 60.322 45.833 0.00 0.00 0.00 0.86
2631 3377 3.555168 GGCCTAGTTTACGCTGCTGATAT 60.555 47.826 0.00 0.00 0.00 1.63
2632 3378 2.223971 GGCCTAGTTTACGCTGCTGATA 60.224 50.000 0.00 0.00 0.00 2.15
2633 3379 1.473434 GGCCTAGTTTACGCTGCTGAT 60.473 52.381 0.00 0.00 0.00 2.90
2634 3380 0.108329 GGCCTAGTTTACGCTGCTGA 60.108 55.000 0.00 0.00 0.00 4.26
2635 3381 0.108138 AGGCCTAGTTTACGCTGCTG 60.108 55.000 1.29 0.00 0.00 4.41
2636 3382 0.613777 AAGGCCTAGTTTACGCTGCT 59.386 50.000 5.16 0.00 0.00 4.24
2637 3383 1.397343 GAAAGGCCTAGTTTACGCTGC 59.603 52.381 5.16 0.00 0.00 5.25
2638 3384 2.973945 AGAAAGGCCTAGTTTACGCTG 58.026 47.619 5.16 0.00 0.00 5.18
2639 3385 3.697619 AAGAAAGGCCTAGTTTACGCT 57.302 42.857 5.16 0.00 0.00 5.07
2641 3387 7.845066 AGAAATAAGAAAGGCCTAGTTTACG 57.155 36.000 5.16 0.00 0.00 3.18
2642 3388 9.662947 TGTAGAAATAAGAAAGGCCTAGTTTAC 57.337 33.333 5.16 2.48 0.00 2.01
2645 3391 7.337184 GCTTGTAGAAATAAGAAAGGCCTAGTT 59.663 37.037 5.16 0.00 0.00 2.24
2647 3393 6.018669 CGCTTGTAGAAATAAGAAAGGCCTAG 60.019 42.308 5.16 0.00 0.00 3.02
2651 3397 5.106673 ACACGCTTGTAGAAATAAGAAAGGC 60.107 40.000 0.00 0.00 32.60 4.35
2652 3398 6.073222 ACACACGCTTGTAGAAATAAGAAAGG 60.073 38.462 0.00 0.00 33.30 3.11
2653 3399 6.888430 ACACACGCTTGTAGAAATAAGAAAG 58.112 36.000 0.00 0.00 33.30 2.62
2655 3401 7.601130 ACATACACACGCTTGTAGAAATAAGAA 59.399 33.333 0.00 0.00 35.44 2.52
2659 3405 6.391537 TGACATACACACGCTTGTAGAAATA 58.608 36.000 0.00 0.00 35.44 1.40
2660 3406 5.234752 TGACATACACACGCTTGTAGAAAT 58.765 37.500 0.00 0.00 35.44 2.17
2661 3407 4.623002 TGACATACACACGCTTGTAGAAA 58.377 39.130 0.00 0.00 35.44 2.52
2662 3408 4.245845 TGACATACACACGCTTGTAGAA 57.754 40.909 0.00 0.00 35.44 2.10
2663 3409 3.926821 TGACATACACACGCTTGTAGA 57.073 42.857 0.00 0.00 35.44 2.59
2664 3410 5.348724 AGAAATGACATACACACGCTTGTAG 59.651 40.000 0.00 0.00 35.44 2.74
2665 3411 5.234752 AGAAATGACATACACACGCTTGTA 58.765 37.500 0.00 0.00 36.41 2.41
2666 3412 4.065088 AGAAATGACATACACACGCTTGT 58.935 39.130 0.00 0.00 35.84 3.16
2667 3413 4.668576 AGAAATGACATACACACGCTTG 57.331 40.909 0.00 0.00 0.00 4.01
2668 3414 5.163992 CGTTAGAAATGACATACACACGCTT 60.164 40.000 0.00 0.00 0.00 4.68
2670 3416 4.325204 TCGTTAGAAATGACATACACACGC 59.675 41.667 0.00 0.00 0.00 5.34
2671 3417 6.231365 GTTCGTTAGAAATGACATACACACG 58.769 40.000 0.00 0.37 38.23 4.49
2672 3418 6.146510 TGGTTCGTTAGAAATGACATACACAC 59.853 38.462 0.00 0.00 38.23 3.82
2673 3419 6.146510 GTGGTTCGTTAGAAATGACATACACA 59.853 38.462 0.00 0.00 38.23 3.72
2675 3421 6.460781 AGTGGTTCGTTAGAAATGACATACA 58.539 36.000 0.00 0.00 38.23 2.29
2676 3422 6.035758 GGAGTGGTTCGTTAGAAATGACATAC 59.964 42.308 0.00 0.00 38.23 2.39
2677 3423 6.103997 GGAGTGGTTCGTTAGAAATGACATA 58.896 40.000 0.00 0.00 38.23 2.29
2683 3682 3.055312 GGAGGGAGTGGTTCGTTAGAAAT 60.055 47.826 0.00 0.00 38.23 2.17
2687 3686 0.172803 CGGAGGGAGTGGTTCGTTAG 59.827 60.000 0.00 0.00 0.00 2.34
2689 3688 1.813728 GACGGAGGGAGTGGTTCGTT 61.814 60.000 0.00 0.00 0.00 3.85
2691 3690 1.935327 GAGACGGAGGGAGTGGTTCG 61.935 65.000 0.00 0.00 0.00 3.95
2692 3691 0.898789 TGAGACGGAGGGAGTGGTTC 60.899 60.000 0.00 0.00 0.00 3.62
2696 3695 2.695666 ACATTATGAGACGGAGGGAGTG 59.304 50.000 0.00 0.00 0.00 3.51
2700 3699 5.011125 ACATCTTACATTATGAGACGGAGGG 59.989 44.000 0.00 0.00 0.00 4.30
2701 3700 6.090483 ACATCTTACATTATGAGACGGAGG 57.910 41.667 0.00 0.00 0.00 4.30
2751 3750 7.987458 TCCCTCTGTCTCATAATGTAAAATGTC 59.013 37.037 0.00 0.00 0.00 3.06
2753 3752 7.989741 ACTCCCTCTGTCTCATAATGTAAAATG 59.010 37.037 0.00 0.00 0.00 2.32
2755 3754 7.496346 ACTCCCTCTGTCTCATAATGTAAAA 57.504 36.000 0.00 0.00 0.00 1.52
2757 3756 7.583625 TCTACTCCCTCTGTCTCATAATGTAA 58.416 38.462 0.00 0.00 0.00 2.41
2758 3757 7.150447 TCTACTCCCTCTGTCTCATAATGTA 57.850 40.000 0.00 0.00 0.00 2.29
2760 3759 6.968263 TTCTACTCCCTCTGTCTCATAATG 57.032 41.667 0.00 0.00 0.00 1.90
2761 3760 7.621683 ACTTTTCTACTCCCTCTGTCTCATAAT 59.378 37.037 0.00 0.00 0.00 1.28
2762 3761 6.954684 ACTTTTCTACTCCCTCTGTCTCATAA 59.045 38.462 0.00 0.00 0.00 1.90
2763 3762 6.378564 CACTTTTCTACTCCCTCTGTCTCATA 59.621 42.308 0.00 0.00 0.00 2.15
2764 3763 5.186797 CACTTTTCTACTCCCTCTGTCTCAT 59.813 44.000 0.00 0.00 0.00 2.90
2765 3764 4.524714 CACTTTTCTACTCCCTCTGTCTCA 59.475 45.833 0.00 0.00 0.00 3.27
2766 3765 4.619628 GCACTTTTCTACTCCCTCTGTCTC 60.620 50.000 0.00 0.00 0.00 3.36
2767 3766 3.259625 GCACTTTTCTACTCCCTCTGTCT 59.740 47.826 0.00 0.00 0.00 3.41
2768 3767 3.259625 AGCACTTTTCTACTCCCTCTGTC 59.740 47.826 0.00 0.00 0.00 3.51
2770 3769 3.259374 TCAGCACTTTTCTACTCCCTCTG 59.741 47.826 0.00 0.00 0.00 3.35
2773 3772 4.287067 TCAATCAGCACTTTTCTACTCCCT 59.713 41.667 0.00 0.00 0.00 4.20
2776 3775 7.377131 GTGTTTTCAATCAGCACTTTTCTACTC 59.623 37.037 0.00 0.00 0.00 2.59
2777 3776 7.196331 GTGTTTTCAATCAGCACTTTTCTACT 58.804 34.615 0.00 0.00 0.00 2.57
2778 3777 6.140737 CGTGTTTTCAATCAGCACTTTTCTAC 59.859 38.462 0.00 0.00 0.00 2.59
2780 3779 5.036737 CGTGTTTTCAATCAGCACTTTTCT 58.963 37.500 0.00 0.00 0.00 2.52
2781 3780 5.034152 TCGTGTTTTCAATCAGCACTTTTC 58.966 37.500 0.00 0.00 0.00 2.29
2782 3781 4.798387 GTCGTGTTTTCAATCAGCACTTTT 59.202 37.500 0.00 0.00 0.00 2.27
2783 3782 4.351192 GTCGTGTTTTCAATCAGCACTTT 58.649 39.130 0.00 0.00 0.00 2.66
2784 3783 3.243068 GGTCGTGTTTTCAATCAGCACTT 60.243 43.478 0.00 0.00 0.00 3.16
2785 3784 2.290641 GGTCGTGTTTTCAATCAGCACT 59.709 45.455 0.00 0.00 0.00 4.40
2786 3785 2.604614 GGGTCGTGTTTTCAATCAGCAC 60.605 50.000 0.00 0.00 0.00 4.40
2787 3786 1.606668 GGGTCGTGTTTTCAATCAGCA 59.393 47.619 0.00 0.00 0.00 4.41
2789 3788 3.980646 TTGGGTCGTGTTTTCAATCAG 57.019 42.857 0.00 0.00 0.00 2.90
2809 3808 1.512156 CGTGCCGTGGTAGCCTTTTT 61.512 55.000 0.00 0.00 0.00 1.94
2823 3822 4.752879 TTCCCGTAGCAGCGTGCC 62.753 66.667 6.39 0.00 46.52 5.01
2824 3823 2.322081 TTTTCCCGTAGCAGCGTGC 61.322 57.895 2.28 2.28 45.46 5.34
2825 3824 1.225376 TGTTTTCCCGTAGCAGCGTG 61.225 55.000 0.00 0.00 0.00 5.34
2826 3825 1.070105 TGTTTTCCCGTAGCAGCGT 59.930 52.632 0.00 0.00 0.00 5.07
2827 3826 1.225376 TGTGTTTTCCCGTAGCAGCG 61.225 55.000 0.00 0.00 0.00 5.18
2828 3827 0.237498 GTGTGTTTTCCCGTAGCAGC 59.763 55.000 0.00 0.00 0.00 5.25
2829 3828 0.872388 GGTGTGTTTTCCCGTAGCAG 59.128 55.000 0.00 0.00 0.00 4.24
2830 3829 0.470766 AGGTGTGTTTTCCCGTAGCA 59.529 50.000 0.00 0.00 0.00 3.49
2831 3830 1.601166 AAGGTGTGTTTTCCCGTAGC 58.399 50.000 0.00 0.00 0.00 3.58
2833 3832 4.420522 AAGTAAGGTGTGTTTTCCCGTA 57.579 40.909 0.00 0.00 0.00 4.02
2834 3833 3.286329 AAGTAAGGTGTGTTTTCCCGT 57.714 42.857 0.00 0.00 0.00 5.28
2835 3834 5.952526 ATTAAGTAAGGTGTGTTTTCCCG 57.047 39.130 0.00 0.00 0.00 5.14
2836 3835 8.294577 CACTAATTAAGTAAGGTGTGTTTTCCC 58.705 37.037 0.00 0.00 35.76 3.97
2838 3837 9.659830 CACACTAATTAAGTAAGGTGTGTTTTC 57.340 33.333 19.38 0.00 45.07 2.29
2860 4830 9.995957 AAAAACATTTGGCTTATAAAAACACAC 57.004 25.926 0.00 0.00 0.00 3.82
2885 4855 5.596361 TGTATAAGTCGTATACCCGGGAAAA 59.404 40.000 32.02 12.97 42.77 2.29
2886 4856 5.136828 TGTATAAGTCGTATACCCGGGAAA 58.863 41.667 32.02 15.98 42.77 3.13
2887 4857 4.724399 TGTATAAGTCGTATACCCGGGAA 58.276 43.478 32.02 9.50 42.77 3.97
2888 4858 4.365514 TGTATAAGTCGTATACCCGGGA 57.634 45.455 32.02 11.89 42.77 5.14
2890 4860 5.009010 ACACTTGTATAAGTCGTATACCCGG 59.991 44.000 11.84 0.00 45.12 5.73
2892 4862 7.592903 GCTTACACTTGTATAAGTCGTATACCC 59.407 40.741 11.84 0.00 45.12 3.69
2893 4863 7.592903 GGCTTACACTTGTATAAGTCGTATACC 59.407 40.741 11.84 8.92 45.12 2.73
2894 4864 7.322222 CGGCTTACACTTGTATAAGTCGTATAC 59.678 40.741 15.01 8.52 46.38 1.47
2895 4865 7.355017 CGGCTTACACTTGTATAAGTCGTATA 58.645 38.462 15.01 0.00 46.38 1.47
2897 4867 5.572211 CGGCTTACACTTGTATAAGTCGTA 58.428 41.667 15.01 6.30 46.38 3.43
2898 4868 4.418392 CGGCTTACACTTGTATAAGTCGT 58.582 43.478 15.01 7.17 46.38 4.34
2900 4870 5.648572 ACTCGGCTTACACTTGTATAAGTC 58.351 41.667 1.29 0.00 45.12 3.01
2902 4872 6.793349 AGTACTCGGCTTACACTTGTATAAG 58.207 40.000 0.00 0.00 39.86 1.73
2904 4910 6.118170 AGAGTACTCGGCTTACACTTGTATA 58.882 40.000 17.07 0.00 34.09 1.47
2908 4914 3.851976 AGAGTACTCGGCTTACACTTG 57.148 47.619 17.07 0.00 34.09 3.16
2911 4917 4.170292 TCAAAGAGTACTCGGCTTACAC 57.830 45.455 17.07 0.00 34.09 2.90
2914 4920 6.050432 TGTTTTTCAAAGAGTACTCGGCTTA 58.950 36.000 17.07 1.93 34.09 3.09
2915 4921 4.879545 TGTTTTTCAAAGAGTACTCGGCTT 59.120 37.500 17.07 9.29 34.09 4.35
2917 4923 4.806342 TGTTTTTCAAAGAGTACTCGGC 57.194 40.909 17.07 0.00 34.09 5.54
2920 4926 8.736751 TGTTGTTTGTTTTTCAAAGAGTACTC 57.263 30.769 15.41 15.41 45.15 2.59
2922 4928 7.942538 CGTTGTTGTTTGTTTTTCAAAGAGTAC 59.057 33.333 0.00 0.00 45.15 2.73
2925 4931 6.295857 CCGTTGTTGTTTGTTTTTCAAAGAG 58.704 36.000 0.00 0.00 45.15 2.85
2927 4933 4.843448 GCCGTTGTTGTTTGTTTTTCAAAG 59.157 37.500 0.00 0.00 45.15 2.77
2929 4935 3.807622 TGCCGTTGTTGTTTGTTTTTCAA 59.192 34.783 0.00 0.00 0.00 2.69
2930 4936 3.390135 TGCCGTTGTTGTTTGTTTTTCA 58.610 36.364 0.00 0.00 0.00 2.69
2932 4938 2.739379 CCTGCCGTTGTTGTTTGTTTTT 59.261 40.909 0.00 0.00 0.00 1.94
2941 4947 4.974721 AGGGGCCTGCCGTTGTTG 62.975 66.667 0.84 0.00 36.85 3.33
2963 4969 2.532843 ACTCGGCTTACAGGGAACTAA 58.467 47.619 0.00 0.00 40.21 2.24
2964 4970 2.226962 ACTCGGCTTACAGGGAACTA 57.773 50.000 0.00 0.00 40.21 2.24
2965 4971 1.823610 GTACTCGGCTTACAGGGAACT 59.176 52.381 0.00 0.00 46.44 3.01
2966 4972 1.468736 CGTACTCGGCTTACAGGGAAC 60.469 57.143 0.00 0.00 0.00 3.62
2967 4973 0.813184 CGTACTCGGCTTACAGGGAA 59.187 55.000 0.00 0.00 0.00 3.97
2969 4975 0.100146 GACGTACTCGGCTTACAGGG 59.900 60.000 0.00 0.00 42.52 4.45
2970 4976 0.806868 TGACGTACTCGGCTTACAGG 59.193 55.000 0.00 0.00 46.49 4.00
2971 4977 2.096980 TCATGACGTACTCGGCTTACAG 59.903 50.000 0.00 0.00 46.49 2.74
2972 4978 2.086094 TCATGACGTACTCGGCTTACA 58.914 47.619 0.00 0.00 46.49 2.41
2973 4979 2.838386 TCATGACGTACTCGGCTTAC 57.162 50.000 0.00 0.00 46.49 2.34
2974 4980 3.853831 TTTCATGACGTACTCGGCTTA 57.146 42.857 0.00 0.00 46.49 3.09
2975 4981 2.735134 GTTTTCATGACGTACTCGGCTT 59.265 45.455 0.00 0.00 46.49 4.35
2976 4982 2.288579 TGTTTTCATGACGTACTCGGCT 60.289 45.455 0.00 0.00 46.49 5.52
2978 4984 3.054166 TGTGTTTTCATGACGTACTCGG 58.946 45.455 0.00 0.00 41.85 4.63
2979 4985 3.487942 TGTGTGTTTTCATGACGTACTCG 59.512 43.478 0.00 0.00 43.34 4.18
2981 4987 5.804692 TTTGTGTGTTTTCATGACGTACT 57.195 34.783 0.00 0.00 0.00 2.73
2982 4988 6.195868 TCATTTGTGTGTTTTCATGACGTAC 58.804 36.000 0.00 0.00 0.00 3.67
2983 4989 6.364945 TCATTTGTGTGTTTTCATGACGTA 57.635 33.333 0.00 0.00 0.00 3.57
2985 4991 7.269084 GTCTATCATTTGTGTGTTTTCATGACG 59.731 37.037 0.00 0.00 0.00 4.35
2986 4992 8.075574 TGTCTATCATTTGTGTGTTTTCATGAC 58.924 33.333 0.00 0.00 0.00 3.06
2987 4993 8.164058 TGTCTATCATTTGTGTGTTTTCATGA 57.836 30.769 0.00 0.00 0.00 3.07
2988 4994 8.856247 CATGTCTATCATTTGTGTGTTTTCATG 58.144 33.333 0.00 0.00 34.09 3.07
2989 4995 8.030692 CCATGTCTATCATTTGTGTGTTTTCAT 58.969 33.333 0.00 0.00 34.09 2.57
2990 4996 7.369607 CCATGTCTATCATTTGTGTGTTTTCA 58.630 34.615 0.00 0.00 34.09 2.69
2991 4997 6.308766 GCCATGTCTATCATTTGTGTGTTTTC 59.691 38.462 0.00 0.00 34.09 2.29
2992 4998 6.158598 GCCATGTCTATCATTTGTGTGTTTT 58.841 36.000 0.00 0.00 34.09 2.43
2994 5000 4.158394 GGCCATGTCTATCATTTGTGTGTT 59.842 41.667 0.00 0.00 34.09 3.32
2995 5001 3.696051 GGCCATGTCTATCATTTGTGTGT 59.304 43.478 0.00 0.00 34.09 3.72
2997 5003 3.966979 TGGCCATGTCTATCATTTGTGT 58.033 40.909 0.00 0.00 34.09 3.72
2998 5004 4.987408 TTGGCCATGTCTATCATTTGTG 57.013 40.909 6.09 0.00 34.09 3.33
2999 5005 5.202765 TCATTGGCCATGTCTATCATTTGT 58.797 37.500 6.09 0.00 34.09 2.83
3000 5006 5.777850 TCATTGGCCATGTCTATCATTTG 57.222 39.130 6.09 0.00 34.09 2.32
3001 5007 6.040166 GTCTTCATTGGCCATGTCTATCATTT 59.960 38.462 6.09 0.00 34.09 2.32
3002 5008 5.533903 GTCTTCATTGGCCATGTCTATCATT 59.466 40.000 6.09 0.00 34.09 2.57
3004 5010 4.080413 TGTCTTCATTGGCCATGTCTATCA 60.080 41.667 6.09 0.00 34.06 2.15
3005 5011 4.454678 TGTCTTCATTGGCCATGTCTATC 58.545 43.478 6.09 0.00 34.06 2.08
3006 5012 4.508551 TGTCTTCATTGGCCATGTCTAT 57.491 40.909 6.09 0.00 34.06 1.98
3007 5013 3.998913 TGTCTTCATTGGCCATGTCTA 57.001 42.857 6.09 0.00 34.06 2.59
3008 5014 2.885135 TGTCTTCATTGGCCATGTCT 57.115 45.000 6.09 0.00 34.06 3.41
3009 5015 3.018856 TGATGTCTTCATTGGCCATGTC 58.981 45.455 6.09 0.70 34.06 3.06
3010 5016 3.021695 CTGATGTCTTCATTGGCCATGT 58.978 45.455 6.09 0.00 34.06 3.21
3011 5017 3.021695 ACTGATGTCTTCATTGGCCATG 58.978 45.455 6.09 7.61 34.06 3.66
3017 5023 2.674852 CGACCCACTGATGTCTTCATTG 59.325 50.000 0.53 0.53 35.38 2.82
3018 5024 2.303022 ACGACCCACTGATGTCTTCATT 59.697 45.455 0.00 0.00 34.06 2.57
3020 5026 1.272490 GACGACCCACTGATGTCTTCA 59.728 52.381 0.00 0.00 31.98 3.02
3021 5027 1.732732 CGACGACCCACTGATGTCTTC 60.733 57.143 0.00 0.00 0.00 2.87
3022 5028 0.243907 CGACGACCCACTGATGTCTT 59.756 55.000 0.00 0.00 0.00 3.01
3023 5029 0.608308 TCGACGACCCACTGATGTCT 60.608 55.000 0.00 0.00 0.00 3.41
3024 5030 0.456221 ATCGACGACCCACTGATGTC 59.544 55.000 0.00 0.00 0.00 3.06
3025 5031 0.173481 CATCGACGACCCACTGATGT 59.827 55.000 0.00 0.00 33.48 3.06
3026 5032 0.528466 CCATCGACGACCCACTGATG 60.528 60.000 0.00 0.00 36.93 3.07
3027 5033 1.816537 CCATCGACGACCCACTGAT 59.183 57.895 0.00 0.00 0.00 2.90
3028 5034 3.001902 GCCATCGACGACCCACTGA 62.002 63.158 0.00 0.00 0.00 3.41
3029 5035 2.509336 GCCATCGACGACCCACTG 60.509 66.667 0.00 0.00 0.00 3.66
3039 5045 4.237809 CGAGAGCGTCGCCATCGA 62.238 66.667 27.98 0.00 43.03 3.59
3047 5053 4.200283 CCAGAGCCCGAGAGCGTC 62.200 72.222 0.00 0.00 38.01 5.19
3113 5457 3.597728 GACTAGGCGGCCTCGGAG 61.598 72.222 27.65 19.97 34.61 4.63
3123 5467 4.971125 GGATGCGGGCGACTAGGC 62.971 72.222 0.00 0.00 45.91 3.93
3124 5468 4.301027 GGGATGCGGGCGACTAGG 62.301 72.222 0.00 0.00 0.00 3.02
3125 5469 4.301027 GGGGATGCGGGCGACTAG 62.301 72.222 0.00 0.00 0.00 2.57
3169 5513 4.873129 CATCGCCAGGGGTCGTCG 62.873 72.222 2.89 0.00 0.00 5.12
3210 5554 3.746949 GAGATGCAGCCGGGACAGG 62.747 68.421 2.18 0.00 0.00 4.00
3211 5555 2.202987 GAGATGCAGCCGGGACAG 60.203 66.667 2.18 0.00 0.00 3.51
3212 5556 3.785859 GGAGATGCAGCCGGGACA 61.786 66.667 2.18 0.00 0.00 4.02
3213 5557 4.899239 CGGAGATGCAGCCGGGAC 62.899 72.222 15.35 0.00 43.67 4.46
3219 5563 3.934684 GAAGCGCGGAGATGCAGC 61.935 66.667 8.83 0.00 35.58 5.25
3220 5564 3.267860 GGAAGCGCGGAGATGCAG 61.268 66.667 8.83 0.00 32.84 4.41
3233 5577 2.768492 GCAATCAGCCCAGCGGAAG 61.768 63.158 0.00 0.00 36.25 3.46
3234 5578 2.751436 GCAATCAGCCCAGCGGAA 60.751 61.111 0.00 0.00 36.25 4.30
3243 5587 3.918220 CTCGTCGGCGCAATCAGC 61.918 66.667 10.83 0.00 38.14 4.26
3244 5588 3.918220 GCTCGTCGGCGCAATCAG 61.918 66.667 10.83 0.00 38.14 2.90
3253 5597 4.452733 GGAAGGGTGGCTCGTCGG 62.453 72.222 0.00 0.00 0.00 4.79
3254 5598 4.452733 GGGAAGGGTGGCTCGTCG 62.453 72.222 0.00 0.00 0.00 5.12
3255 5599 4.097361 GGGGAAGGGTGGCTCGTC 62.097 72.222 0.00 0.00 0.00 4.20
3325 5669 4.715130 TACCAGCCCGGCAGGACT 62.715 66.667 26.71 8.46 37.40 3.85
3326 5670 3.712907 TTACCAGCCCGGCAGGAC 61.713 66.667 26.71 0.00 37.40 3.85
3327 5671 3.712907 GTTACCAGCCCGGCAGGA 61.713 66.667 26.71 8.22 37.40 3.86
3328 5672 4.796495 GGTTACCAGCCCGGCAGG 62.796 72.222 19.00 19.00 41.13 4.85
3329 5673 4.796495 GGGTTACCAGCCCGGCAG 62.796 72.222 13.15 2.88 39.03 4.85
3386 5730 4.133796 GAGGTTTGCGCATGGGGC 62.134 66.667 12.75 4.69 41.94 5.80
3387 5731 3.814268 CGAGGTTTGCGCATGGGG 61.814 66.667 12.75 0.00 0.00 4.96
3394 5738 4.735132 TCGAGGGCGAGGTTTGCG 62.735 66.667 0.00 0.00 42.51 4.85
3402 5746 2.676822 AGACAAGCTCGAGGGCGA 60.677 61.111 15.58 0.00 45.71 5.54
3403 5747 2.202676 GAGACAAGCTCGAGGGCG 60.203 66.667 15.58 0.00 37.29 6.13
3410 5754 1.142097 GGTAGCCCGAGACAAGCTC 59.858 63.158 0.00 0.00 38.06 4.09
3411 5755 3.300013 GGTAGCCCGAGACAAGCT 58.700 61.111 0.00 0.00 40.66 3.74
3423 5767 4.096003 TCCTTGCAGCCCGGTAGC 62.096 66.667 0.00 1.26 0.00 3.58
3424 5768 2.187946 CTCCTTGCAGCCCGGTAG 59.812 66.667 0.00 0.00 0.00 3.18
3425 5769 4.096003 GCTCCTTGCAGCCCGGTA 62.096 66.667 0.00 0.00 42.31 4.02
3445 5789 4.052518 CTCCACCAGCCCCCAAGG 62.053 72.222 0.00 0.00 39.47 3.61
3446 5790 4.748144 GCTCCACCAGCCCCCAAG 62.748 72.222 0.00 0.00 43.17 3.61
3454 5798 2.743928 GACGGCAAGCTCCACCAG 60.744 66.667 0.00 0.00 0.00 4.00
3455 5799 4.680237 CGACGGCAAGCTCCACCA 62.680 66.667 0.00 0.00 0.00 4.17
3478 5822 0.324091 GACTACTCCCCAAGACCGGA 60.324 60.000 9.46 0.00 0.00 5.14
3480 5824 1.664321 CCGACTACTCCCCAAGACCG 61.664 65.000 0.00 0.00 0.00 4.79
3481 5825 1.957765 GCCGACTACTCCCCAAGACC 61.958 65.000 0.00 0.00 0.00 3.85
3482 5826 1.516423 GCCGACTACTCCCCAAGAC 59.484 63.158 0.00 0.00 0.00 3.01
3483 5827 1.684734 GGCCGACTACTCCCCAAGA 60.685 63.158 0.00 0.00 0.00 3.02
3484 5828 2.901042 GGCCGACTACTCCCCAAG 59.099 66.667 0.00 0.00 0.00 3.61
3485 5829 3.072468 CGGCCGACTACTCCCCAA 61.072 66.667 24.07 0.00 0.00 4.12
3488 5832 3.902086 GAGCGGCCGACTACTCCC 61.902 72.222 33.48 8.41 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.