Multiple sequence alignment - TraesCS2B01G016600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G016600 chr2B 100.000 3756 0 0 1 3756 7775638 7779393 0.000000e+00 6937.0
1 TraesCS2B01G016600 chr2B 90.549 1439 86 14 1018 2426 31300965 31302383 0.000000e+00 1858.0
2 TraesCS2B01G016600 chr2B 82.687 1392 170 33 1037 2397 11475 10124 0.000000e+00 1170.0
3 TraesCS2B01G016600 chr2B 82.382 1402 174 33 1029 2397 319425 318064 0.000000e+00 1153.0
4 TraesCS2B01G016600 chr2B 94.271 192 10 1 2507 2698 615733092 615733282 3.670000e-75 292.0
5 TraesCS2B01G016600 chr2B 79.290 169 29 6 3516 3681 26350031 26349866 3.070000e-21 113.0
6 TraesCS2B01G016600 chr2B 78.443 167 32 2 3252 3418 559175483 559175321 5.130000e-19 106.0
7 TraesCS2B01G016600 chr2B 77.586 174 31 7 3516 3684 742379771 742379601 8.590000e-17 99.0
8 TraesCS2B01G016600 chr2B 77.586 174 27 9 3516 3684 796658167 796658333 1.110000e-15 95.3
9 TraesCS2B01G016600 chr2D 91.881 1983 94 25 218 2166 2905885 2903936 0.000000e+00 2708.0
10 TraesCS2B01G016600 chr2D 91.049 1430 90 12 1018 2434 2613862 2615266 0.000000e+00 1897.0
11 TraesCS2B01G016600 chr2D 89.177 924 68 18 2846 3756 2900657 2899753 0.000000e+00 1123.0
12 TraesCS2B01G016600 chr2D 93.885 278 7 5 2159 2426 2903305 2903028 9.710000e-111 411.0
13 TraesCS2B01G016600 chr2D 91.429 140 12 0 2180 2319 2902628 2902489 3.830000e-45 193.0
14 TraesCS2B01G016600 chr2D 74.232 423 84 20 1202 1619 24936105 24936507 1.810000e-33 154.0
15 TraesCS2B01G016600 chr2D 94.000 100 3 3 2748 2847 2900793 2900697 8.410000e-32 148.0
16 TraesCS2B01G016600 chr2D 76.364 330 41 22 3388 3693 29840207 29840523 3.910000e-30 143.0
17 TraesCS2B01G016600 chr2D 95.122 82 4 0 2353 2434 2902495 2902414 3.040000e-26 130.0
18 TraesCS2B01G016600 chr2D 100.000 50 0 0 2712 2761 2902376 2902327 3.990000e-15 93.5
19 TraesCS2B01G016600 chr6D 93.451 1420 62 10 1018 2426 18097988 18099387 0.000000e+00 2078.0
20 TraesCS2B01G016600 chr6D 86.341 410 45 8 218 620 18097217 18097622 1.600000e-118 436.0
21 TraesCS2B01G016600 chr6D 81.250 176 25 6 3516 3685 375095049 375095222 6.540000e-28 135.0
22 TraesCS2B01G016600 chr6D 85.600 125 18 0 3561 3685 433290835 433290959 8.470000e-27 132.0
23 TraesCS2B01G016600 chr2A 82.214 1400 184 38 1029 2397 1685665 1687030 0.000000e+00 1146.0
24 TraesCS2B01G016600 chr2A 94.271 192 9 2 2507 2698 72943072 72943261 3.670000e-75 292.0
25 TraesCS2B01G016600 chr2A 78.512 242 37 12 3457 3686 709018819 709019057 1.090000e-30 145.0
26 TraesCS2B01G016600 chr2A 78.761 226 41 6 2846 3065 756135334 756135558 1.090000e-30 145.0
27 TraesCS2B01G016600 chr3B 93.878 196 12 0 2504 2699 26771435 26771630 2.840000e-76 296.0
28 TraesCS2B01G016600 chr3B 92.893 197 12 2 2513 2709 758070445 758070251 6.140000e-73 285.0
29 TraesCS2B01G016600 chr3B 74.618 327 67 9 3127 3449 765584507 765584193 3.040000e-26 130.0
30 TraesCS2B01G016600 chr3B 78.862 123 23 3 3324 3445 81303833 81303953 3.110000e-11 80.5
31 TraesCS2B01G016600 chr1B 95.652 184 6 2 2510 2691 558516447 558516264 1.020000e-75 294.0
32 TraesCS2B01G016600 chr1B 75.692 325 59 17 3125 3444 637395204 637395513 1.090000e-30 145.0
33 TraesCS2B01G016600 chr6B 94.271 192 9 1 2509 2698 213152563 213152372 3.670000e-75 292.0
34 TraesCS2B01G016600 chr6B 93.000 200 14 0 2507 2706 695088424 695088623 3.670000e-75 292.0
35 TraesCS2B01G016600 chr6B 81.818 165 25 5 3275 3435 704737766 704737929 2.350000e-27 134.0
36 TraesCS2B01G016600 chr6B 78.531 177 30 8 3516 3686 23113331 23113505 3.970000e-20 110.0
37 TraesCS2B01G016600 chr3D 93.367 196 11 2 2508 2701 612598958 612599153 4.750000e-74 289.0
38 TraesCS2B01G016600 chr3D 75.986 558 92 24 3138 3688 93190404 93189882 2.240000e-62 250.0
39 TraesCS2B01G016600 chr4A 93.333 195 10 3 2500 2693 662620982 662621174 6.140000e-73 285.0
40 TraesCS2B01G016600 chr4A 100.000 35 0 0 184 218 626509091 626509057 8.710000e-07 65.8
41 TraesCS2B01G016600 chr5B 75.269 558 95 27 3164 3686 467049222 467048673 3.770000e-55 226.0
42 TraesCS2B01G016600 chr5B 92.857 56 2 1 1 54 688928722 688928667 3.110000e-11 80.5
43 TraesCS2B01G016600 chr5B 92.857 56 2 1 1 54 689028634 689028579 3.110000e-11 80.5
44 TraesCS2B01G016600 chr5D 80.000 195 33 5 2874 3063 515665555 515665748 5.060000e-29 139.0
45 TraesCS2B01G016600 chr1A 80.645 186 29 4 3233 3418 575655437 575655615 1.820000e-28 137.0
46 TraesCS2B01G016600 chr4B 96.386 83 1 1 137 219 27144449 27144369 6.540000e-28 135.0
47 TraesCS2B01G016600 chr4B 98.148 54 1 0 1 54 27144698 27144645 1.110000e-15 95.3
48 TraesCS2B01G016600 chr1D 88.889 90 9 1 3355 3444 462332872 462332960 3.970000e-20 110.0
49 TraesCS2B01G016600 chr7D 75.648 193 39 7 3249 3436 627309473 627309662 5.170000e-14 89.8
50 TraesCS2B01G016600 chrUn 92.857 56 2 1 1 54 474715982 474715927 3.110000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G016600 chr2B 7775638 7779393 3755 False 6937.000000 6937 100.000 1 3756 1 chr2B.!!$F1 3755
1 TraesCS2B01G016600 chr2B 31300965 31302383 1418 False 1858.000000 1858 90.549 1018 2426 1 chr2B.!!$F2 1408
2 TraesCS2B01G016600 chr2B 10124 11475 1351 True 1170.000000 1170 82.687 1037 2397 1 chr2B.!!$R1 1360
3 TraesCS2B01G016600 chr2B 318064 319425 1361 True 1153.000000 1153 82.382 1029 2397 1 chr2B.!!$R2 1368
4 TraesCS2B01G016600 chr2D 2613862 2615266 1404 False 1897.000000 1897 91.049 1018 2434 1 chr2D.!!$F1 1416
5 TraesCS2B01G016600 chr2D 2899753 2905885 6132 True 686.642857 2708 93.642 218 3756 7 chr2D.!!$R1 3538
6 TraesCS2B01G016600 chr6D 18097217 18099387 2170 False 1257.000000 2078 89.896 218 2426 2 chr6D.!!$F3 2208
7 TraesCS2B01G016600 chr2A 1685665 1687030 1365 False 1146.000000 1146 82.214 1029 2397 1 chr2A.!!$F1 1368
8 TraesCS2B01G016600 chr3D 93189882 93190404 522 True 250.000000 250 75.986 3138 3688 1 chr3D.!!$R1 550
9 TraesCS2B01G016600 chr5B 467048673 467049222 549 True 226.000000 226 75.269 3164 3686 1 chr5B.!!$R1 522

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
210 211 0.455005 GCTTGCTCCAATTCTGGCTC 59.545 55.0 0.00 0.0 43.17 4.70 F
1408 1676 0.463295 CTTGCATGATCACGGGCTCT 60.463 55.0 14.61 0.0 0.00 4.09 F
2468 4018 0.110419 CGTATGTTTGGTGTGGCACG 60.110 55.0 13.77 0.0 34.83 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2107 2396 0.247460 CCGGCTCTCATGTCTGTCAA 59.753 55.0 0.0 0.0 0.00 3.18 R
2484 4034 0.036164 ACAAATGGTACTCAGCCGCA 59.964 50.0 0.0 0.0 0.00 5.69 R
3699 6882 0.698238 TTGTCTTGGACCCATCCTGG 59.302 55.0 0.0 0.0 46.43 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.825908 TTATGCTTTCCCAGTTTCCCT 57.174 42.857 0.00 0.00 0.00 4.20
22 23 2.702270 ATGCTTTCCCAGTTTCCCTT 57.298 45.000 0.00 0.00 0.00 3.95
23 24 1.703411 TGCTTTCCCAGTTTCCCTTG 58.297 50.000 0.00 0.00 0.00 3.61
24 25 1.216678 TGCTTTCCCAGTTTCCCTTGA 59.783 47.619 0.00 0.00 0.00 3.02
25 26 2.316108 GCTTTCCCAGTTTCCCTTGAA 58.684 47.619 0.00 0.00 0.00 2.69
26 27 2.899900 GCTTTCCCAGTTTCCCTTGAAT 59.100 45.455 0.00 0.00 0.00 2.57
27 28 4.086457 GCTTTCCCAGTTTCCCTTGAATA 58.914 43.478 0.00 0.00 0.00 1.75
28 29 4.158579 GCTTTCCCAGTTTCCCTTGAATAG 59.841 45.833 0.00 0.00 0.00 1.73
29 30 5.325239 CTTTCCCAGTTTCCCTTGAATAGT 58.675 41.667 0.00 0.00 0.00 2.12
30 31 5.333566 TTCCCAGTTTCCCTTGAATAGTT 57.666 39.130 0.00 0.00 0.00 2.24
31 32 4.662278 TCCCAGTTTCCCTTGAATAGTTG 58.338 43.478 0.00 0.00 0.00 3.16
32 33 4.352595 TCCCAGTTTCCCTTGAATAGTTGA 59.647 41.667 0.00 0.00 0.00 3.18
33 34 5.015178 TCCCAGTTTCCCTTGAATAGTTGAT 59.985 40.000 0.00 0.00 0.00 2.57
34 35 5.126061 CCCAGTTTCCCTTGAATAGTTGATG 59.874 44.000 0.00 0.00 0.00 3.07
35 36 5.393461 CCAGTTTCCCTTGAATAGTTGATGC 60.393 44.000 0.00 0.00 0.00 3.91
36 37 5.416952 CAGTTTCCCTTGAATAGTTGATGCT 59.583 40.000 0.00 0.00 0.00 3.79
37 38 6.012745 AGTTTCCCTTGAATAGTTGATGCTT 58.987 36.000 0.00 0.00 0.00 3.91
38 39 6.151817 AGTTTCCCTTGAATAGTTGATGCTTC 59.848 38.462 0.00 0.00 0.00 3.86
39 40 5.441718 TCCCTTGAATAGTTGATGCTTCT 57.558 39.130 0.88 0.00 0.00 2.85
40 41 5.188434 TCCCTTGAATAGTTGATGCTTCTG 58.812 41.667 0.88 0.00 0.00 3.02
41 42 4.201990 CCCTTGAATAGTTGATGCTTCTGC 60.202 45.833 0.88 0.00 40.20 4.26
42 43 4.639310 CCTTGAATAGTTGATGCTTCTGCT 59.361 41.667 0.88 2.19 40.48 4.24
43 44 5.220815 CCTTGAATAGTTGATGCTTCTGCTC 60.221 44.000 0.88 0.00 40.48 4.26
44 45 3.867493 TGAATAGTTGATGCTTCTGCTCG 59.133 43.478 0.88 0.00 40.48 5.03
45 46 3.533606 ATAGTTGATGCTTCTGCTCGT 57.466 42.857 0.88 0.00 40.48 4.18
46 47 4.655762 ATAGTTGATGCTTCTGCTCGTA 57.344 40.909 0.88 0.00 40.48 3.43
47 48 3.533606 AGTTGATGCTTCTGCTCGTAT 57.466 42.857 0.88 0.00 40.48 3.06
48 49 3.452474 AGTTGATGCTTCTGCTCGTATC 58.548 45.455 0.88 0.00 40.48 2.24
49 50 3.118992 AGTTGATGCTTCTGCTCGTATCA 60.119 43.478 0.88 0.00 40.48 2.15
50 51 3.740631 TGATGCTTCTGCTCGTATCAT 57.259 42.857 0.88 0.00 40.48 2.45
51 52 3.387397 TGATGCTTCTGCTCGTATCATG 58.613 45.455 0.88 0.00 40.48 3.07
52 53 2.967599 TGCTTCTGCTCGTATCATGT 57.032 45.000 0.00 0.00 40.48 3.21
53 54 3.251479 TGCTTCTGCTCGTATCATGTT 57.749 42.857 0.00 0.00 40.48 2.71
54 55 2.931969 TGCTTCTGCTCGTATCATGTTG 59.068 45.455 0.00 0.00 40.48 3.33
55 56 2.932614 GCTTCTGCTCGTATCATGTTGT 59.067 45.455 0.00 0.00 36.03 3.32
56 57 3.372206 GCTTCTGCTCGTATCATGTTGTT 59.628 43.478 0.00 0.00 36.03 2.83
57 58 4.142816 GCTTCTGCTCGTATCATGTTGTTT 60.143 41.667 0.00 0.00 36.03 2.83
58 59 5.063438 GCTTCTGCTCGTATCATGTTGTTTA 59.937 40.000 0.00 0.00 36.03 2.01
59 60 6.647212 TTCTGCTCGTATCATGTTGTTTAG 57.353 37.500 0.00 0.00 0.00 1.85
60 61 5.961272 TCTGCTCGTATCATGTTGTTTAGA 58.039 37.500 0.00 0.00 0.00 2.10
61 62 6.573434 TCTGCTCGTATCATGTTGTTTAGAT 58.427 36.000 0.00 0.00 0.00 1.98
62 63 7.041721 TCTGCTCGTATCATGTTGTTTAGATT 58.958 34.615 0.00 0.00 0.00 2.40
63 64 7.003939 TGCTCGTATCATGTTGTTTAGATTG 57.996 36.000 0.00 0.00 0.00 2.67
64 65 6.037062 TGCTCGTATCATGTTGTTTAGATTGG 59.963 38.462 0.00 0.00 0.00 3.16
65 66 6.511767 GCTCGTATCATGTTGTTTAGATTGGG 60.512 42.308 0.00 0.00 0.00 4.12
66 67 5.295787 TCGTATCATGTTGTTTAGATTGGGC 59.704 40.000 0.00 0.00 0.00 5.36
67 68 4.637483 ATCATGTTGTTTAGATTGGGCG 57.363 40.909 0.00 0.00 0.00 6.13
68 69 3.680490 TCATGTTGTTTAGATTGGGCGA 58.320 40.909 0.00 0.00 0.00 5.54
69 70 4.075682 TCATGTTGTTTAGATTGGGCGAA 58.924 39.130 0.00 0.00 0.00 4.70
70 71 4.155826 TCATGTTGTTTAGATTGGGCGAAG 59.844 41.667 0.00 0.00 0.00 3.79
85 86 1.640428 CGAAGCGGTAGATTGAAGCA 58.360 50.000 0.00 0.00 0.00 3.91
86 87 1.590238 CGAAGCGGTAGATTGAAGCAG 59.410 52.381 0.00 0.00 0.00 4.24
87 88 2.622436 GAAGCGGTAGATTGAAGCAGT 58.378 47.619 0.00 0.00 0.00 4.40
88 89 2.770164 AGCGGTAGATTGAAGCAGTT 57.230 45.000 0.00 0.00 0.00 3.16
89 90 2.350522 AGCGGTAGATTGAAGCAGTTG 58.649 47.619 0.00 0.00 0.00 3.16
90 91 2.076863 GCGGTAGATTGAAGCAGTTGT 58.923 47.619 0.00 0.00 0.00 3.32
91 92 2.094417 GCGGTAGATTGAAGCAGTTGTC 59.906 50.000 0.00 0.00 0.00 3.18
92 93 2.345641 CGGTAGATTGAAGCAGTTGTCG 59.654 50.000 0.00 0.00 0.00 4.35
93 94 3.326747 GGTAGATTGAAGCAGTTGTCGT 58.673 45.455 0.00 0.00 0.00 4.34
94 95 3.368236 GGTAGATTGAAGCAGTTGTCGTC 59.632 47.826 0.00 0.00 0.00 4.20
95 96 2.417719 AGATTGAAGCAGTTGTCGTCC 58.582 47.619 0.00 0.00 0.00 4.79
96 97 2.143122 GATTGAAGCAGTTGTCGTCCA 58.857 47.619 0.00 0.00 0.00 4.02
97 98 2.031258 TTGAAGCAGTTGTCGTCCAA 57.969 45.000 0.00 0.00 0.00 3.53
98 99 2.254546 TGAAGCAGTTGTCGTCCAAT 57.745 45.000 0.00 0.00 35.02 3.16
99 100 2.571212 TGAAGCAGTTGTCGTCCAATT 58.429 42.857 0.00 0.00 35.02 2.32
100 101 2.548057 TGAAGCAGTTGTCGTCCAATTC 59.452 45.455 0.00 0.00 35.02 2.17
101 102 2.550830 AGCAGTTGTCGTCCAATTCT 57.449 45.000 0.00 0.00 35.02 2.40
102 103 2.146342 AGCAGTTGTCGTCCAATTCTG 58.854 47.619 0.00 0.00 35.02 3.02
103 104 1.197721 GCAGTTGTCGTCCAATTCTGG 59.802 52.381 0.00 0.00 45.08 3.86
104 105 2.494059 CAGTTGTCGTCCAATTCTGGT 58.506 47.619 0.00 0.00 43.97 4.00
105 106 3.659786 CAGTTGTCGTCCAATTCTGGTA 58.340 45.455 0.00 0.00 43.97 3.25
106 107 3.432252 CAGTTGTCGTCCAATTCTGGTAC 59.568 47.826 0.00 0.00 43.97 3.34
107 108 3.070446 AGTTGTCGTCCAATTCTGGTACA 59.930 43.478 0.00 0.00 43.97 2.90
108 109 3.755112 TGTCGTCCAATTCTGGTACAA 57.245 42.857 0.00 0.00 43.97 2.41
109 110 4.074627 TGTCGTCCAATTCTGGTACAAA 57.925 40.909 0.00 0.00 43.97 2.83
110 111 4.452825 TGTCGTCCAATTCTGGTACAAAA 58.547 39.130 0.00 0.00 43.97 2.44
111 112 5.067273 TGTCGTCCAATTCTGGTACAAAAT 58.933 37.500 0.00 0.00 43.97 1.82
112 113 5.533154 TGTCGTCCAATTCTGGTACAAAATT 59.467 36.000 0.00 0.00 43.97 1.82
113 114 6.039941 TGTCGTCCAATTCTGGTACAAAATTT 59.960 34.615 0.00 0.00 43.97 1.82
114 115 6.921307 GTCGTCCAATTCTGGTACAAAATTTT 59.079 34.615 0.00 0.00 43.97 1.82
115 116 7.436970 GTCGTCCAATTCTGGTACAAAATTTTT 59.563 33.333 0.00 0.00 43.97 1.94
116 117 7.436673 TCGTCCAATTCTGGTACAAAATTTTTG 59.563 33.333 18.08 18.08 43.97 2.44
117 118 7.351981 GTCCAATTCTGGTACAAAATTTTTGC 58.648 34.615 19.29 6.41 43.97 3.68
118 119 7.011857 GTCCAATTCTGGTACAAAATTTTTGCA 59.988 33.333 19.29 6.26 43.97 4.08
119 120 7.718753 TCCAATTCTGGTACAAAATTTTTGCAT 59.281 29.630 19.29 6.10 43.97 3.96
120 121 8.997323 CCAATTCTGGTACAAAATTTTTGCATA 58.003 29.630 19.29 5.22 38.70 3.14
129 130 9.618410 GTACAAAATTTTTGCATATATGAACGC 57.382 29.630 19.29 1.30 0.00 4.84
130 131 8.477984 ACAAAATTTTTGCATATATGAACGCT 57.522 26.923 19.29 0.00 0.00 5.07
131 132 8.382130 ACAAAATTTTTGCATATATGAACGCTG 58.618 29.630 19.29 4.04 0.00 5.18
132 133 8.593842 CAAAATTTTTGCATATATGAACGCTGA 58.406 29.630 17.10 0.00 0.00 4.26
133 134 8.700722 AAATTTTTGCATATATGAACGCTGAA 57.299 26.923 17.10 0.00 0.00 3.02
134 135 7.684062 ATTTTTGCATATATGAACGCTGAAC 57.316 32.000 17.10 0.00 0.00 3.18
135 136 6.435430 TTTTGCATATATGAACGCTGAACT 57.565 33.333 17.10 0.00 0.00 3.01
136 137 6.435430 TTTGCATATATGAACGCTGAACTT 57.565 33.333 17.10 0.00 0.00 2.66
137 138 5.657470 TGCATATATGAACGCTGAACTTC 57.343 39.130 17.10 0.00 0.00 3.01
138 139 5.115480 TGCATATATGAACGCTGAACTTCA 58.885 37.500 17.10 0.00 0.00 3.02
139 140 5.759763 TGCATATATGAACGCTGAACTTCAT 59.240 36.000 17.10 2.74 39.79 2.57
140 141 6.928492 TGCATATATGAACGCTGAACTTCATA 59.072 34.615 17.10 6.41 41.42 2.15
141 142 7.603784 TGCATATATGAACGCTGAACTTCATAT 59.396 33.333 17.10 16.32 45.62 1.78
142 143 9.087424 GCATATATGAACGCTGAACTTCATATA 57.913 33.333 17.10 18.52 46.51 0.86
146 147 9.710900 ATATGAACGCTGAACTTCATATATGAA 57.289 29.630 23.46 23.46 43.56 2.57
147 148 7.234187 TGAACGCTGAACTTCATATATGAAC 57.766 36.000 21.67 13.92 41.51 3.18
148 149 5.890110 ACGCTGAACTTCATATATGAACG 57.110 39.130 21.67 22.04 41.51 3.95
149 150 5.348986 ACGCTGAACTTCATATATGAACGT 58.651 37.500 23.21 23.21 41.51 3.99
150 151 5.810587 ACGCTGAACTTCATATATGAACGTT 59.189 36.000 26.24 26.24 41.51 3.99
151 152 6.976349 ACGCTGAACTTCATATATGAACGTTA 59.024 34.615 26.11 18.69 41.51 3.18
152 153 7.490079 ACGCTGAACTTCATATATGAACGTTAA 59.510 33.333 26.11 21.93 41.51 2.01
153 154 8.325282 CGCTGAACTTCATATATGAACGTTAAA 58.675 33.333 26.11 20.42 41.51 1.52
168 169 7.309920 TGAACGTTAAATCTTTTCCTTATGGC 58.690 34.615 0.00 0.00 0.00 4.40
169 170 6.827586 ACGTTAAATCTTTTCCTTATGGCA 57.172 33.333 0.00 0.00 0.00 4.92
170 171 7.222000 ACGTTAAATCTTTTCCTTATGGCAA 57.778 32.000 0.00 0.00 0.00 4.52
171 172 7.662897 ACGTTAAATCTTTTCCTTATGGCAAA 58.337 30.769 0.00 0.00 0.00 3.68
172 173 8.145122 ACGTTAAATCTTTTCCTTATGGCAAAA 58.855 29.630 0.00 0.00 28.68 2.44
173 174 8.983724 CGTTAAATCTTTTCCTTATGGCAAAAA 58.016 29.630 0.00 0.00 28.68 1.94
202 203 4.447342 CCCGGGGCTTGCTCCAAT 62.447 66.667 14.71 0.00 0.00 3.16
203 204 2.362889 CCGGGGCTTGCTCCAATT 60.363 61.111 12.41 0.00 0.00 2.32
204 205 2.418083 CCGGGGCTTGCTCCAATTC 61.418 63.158 12.41 0.00 0.00 2.17
205 206 1.379044 CGGGGCTTGCTCCAATTCT 60.379 57.895 12.41 0.00 0.00 2.40
206 207 1.660560 CGGGGCTTGCTCCAATTCTG 61.661 60.000 12.41 0.00 0.00 3.02
207 208 1.325476 GGGGCTTGCTCCAATTCTGG 61.325 60.000 6.65 0.00 45.08 3.86
208 209 1.514553 GGCTTGCTCCAATTCTGGC 59.485 57.895 0.00 0.00 43.17 4.85
209 210 0.969409 GGCTTGCTCCAATTCTGGCT 60.969 55.000 0.00 0.00 43.17 4.75
210 211 0.455005 GCTTGCTCCAATTCTGGCTC 59.545 55.000 0.00 0.00 43.17 4.70
211 212 1.101331 CTTGCTCCAATTCTGGCTCC 58.899 55.000 0.00 0.00 43.17 4.70
212 213 0.677731 TTGCTCCAATTCTGGCTCCG 60.678 55.000 0.00 0.00 43.17 4.63
213 214 2.476320 GCTCCAATTCTGGCTCCGC 61.476 63.158 0.00 0.00 43.17 5.54
267 268 6.436532 TGTGGTTTTGTGTTTCCCTAAAAGTA 59.563 34.615 0.00 0.00 0.00 2.24
379 380 6.721321 TCGTGTAAAATGAAAAGGACAGAAC 58.279 36.000 0.00 0.00 0.00 3.01
444 445 8.746922 ATGTTTGCAGTAAATGAATGTAACTG 57.253 30.769 0.00 0.00 0.00 3.16
665 695 7.182817 AGTAAGAGCATGGTTGATAGTACAA 57.817 36.000 0.00 0.00 0.00 2.41
682 712 9.843334 GATAGTACAACTAGCTGATGGTTATAC 57.157 37.037 2.87 2.87 34.48 1.47
696 726 4.265893 TGGTTATACGATGTTGCCATGTT 58.734 39.130 0.00 0.00 0.00 2.71
732 790 6.028146 TCTTACAGCCGACAAGTACAATAA 57.972 37.500 0.00 0.00 0.00 1.40
780 838 5.738619 TTACTATATGACGCACATCCCAT 57.261 39.130 0.00 0.00 40.07 4.00
807 865 4.746611 CACATAATGTCTAGAAGCGCATGA 59.253 41.667 11.47 0.00 0.00 3.07
808 866 4.747108 ACATAATGTCTAGAAGCGCATGAC 59.253 41.667 11.47 10.48 0.00 3.06
827 885 1.450491 GCGGCTCCTTTTCTCTCCC 60.450 63.158 0.00 0.00 0.00 4.30
828 886 1.153549 CGGCTCCTTTTCTCTCCCG 60.154 63.158 0.00 0.00 0.00 5.14
848 906 5.941058 TCCCGTTCATGTTAGCAGAAAATTA 59.059 36.000 0.00 0.00 0.00 1.40
906 964 7.445900 TTGTACTCGCTCTAAATGTATTTCG 57.554 36.000 0.00 0.00 0.00 3.46
939 997 2.494073 TGAACCGGCCCAATCAATTAAC 59.506 45.455 0.00 0.00 0.00 2.01
948 1006 4.380867 GCCCAATCAATTAACTGTGACAGG 60.381 45.833 17.92 0.00 35.51 4.00
1130 1386 2.514824 GCTGATGCCCGGGAAGAC 60.515 66.667 29.31 13.61 0.00 3.01
1131 1387 2.202932 CTGATGCCCGGGAAGACG 60.203 66.667 29.31 4.67 0.00 4.18
1408 1676 0.463295 CTTGCATGATCACGGGCTCT 60.463 55.000 14.61 0.00 0.00 4.09
1446 1714 3.117657 CAGCCTCCTGGACGATCTA 57.882 57.895 0.00 0.00 35.38 1.98
1701 1972 4.200283 CCTCTGCTCTCGCCGTCC 62.200 72.222 0.00 0.00 34.43 4.79
1707 1978 4.052229 CTCTCGCCGTCCGTGGTT 62.052 66.667 0.00 0.00 38.35 3.67
2111 2400 2.047179 GGTCCCGGAGCTGTTGAC 60.047 66.667 0.73 0.00 0.00 3.18
2434 3984 4.737946 GCGCCTGAGTAACTATGAACTGAT 60.738 45.833 0.00 0.00 0.00 2.90
2435 3985 4.742167 CGCCTGAGTAACTATGAACTGATG 59.258 45.833 0.00 0.00 0.00 3.07
2437 3987 5.053145 CCTGAGTAACTATGAACTGATGGC 58.947 45.833 0.00 0.00 0.00 4.40
2438 3988 5.395657 CCTGAGTAACTATGAACTGATGGCA 60.396 44.000 0.00 0.00 0.00 4.92
2439 3989 5.419542 TGAGTAACTATGAACTGATGGCAC 58.580 41.667 0.00 0.00 0.00 5.01
2440 3990 4.433615 AGTAACTATGAACTGATGGCACG 58.566 43.478 0.00 0.00 0.00 5.34
2443 3993 3.782046 ACTATGAACTGATGGCACGTAC 58.218 45.455 0.00 0.00 0.00 3.67
2445 3995 0.315886 TGAACTGATGGCACGTACGT 59.684 50.000 16.72 16.72 0.00 3.57
2447 3997 2.164827 TGAACTGATGGCACGTACGTAT 59.835 45.455 22.34 11.49 0.00 3.06
2448 3998 3.377798 TGAACTGATGGCACGTACGTATA 59.622 43.478 22.34 10.63 0.00 1.47
2449 3999 3.344904 ACTGATGGCACGTACGTATAC 57.655 47.619 22.34 14.24 0.00 1.47
2464 4014 4.765281 CGTATACGTATGTTTGGTGTGG 57.235 45.455 18.37 0.00 34.11 4.17
2465 4015 3.000523 CGTATACGTATGTTTGGTGTGGC 59.999 47.826 18.37 0.00 34.11 5.01
2466 4016 2.545537 TACGTATGTTTGGTGTGGCA 57.454 45.000 0.00 0.00 0.00 4.92
2467 4017 0.948678 ACGTATGTTTGGTGTGGCAC 59.051 50.000 11.55 11.55 0.00 5.01
2468 4018 0.110419 CGTATGTTTGGTGTGGCACG 60.110 55.000 13.77 0.00 34.83 5.34
2469 4019 0.948678 GTATGTTTGGTGTGGCACGT 59.051 50.000 13.77 0.00 34.83 4.49
2470 4020 2.144730 GTATGTTTGGTGTGGCACGTA 58.855 47.619 13.77 0.00 34.83 3.57
2471 4021 0.948678 ATGTTTGGTGTGGCACGTAC 59.051 50.000 13.77 6.34 34.83 3.67
2472 4022 1.277440 GTTTGGTGTGGCACGTACG 59.723 57.895 15.01 15.01 34.83 3.67
2473 4023 1.153409 TTTGGTGTGGCACGTACGT 60.153 52.632 16.72 16.72 34.83 3.57
2475 4025 2.279650 GGTGTGGCACGTACGTGT 60.280 61.111 39.56 11.43 46.90 4.49
2476 4026 1.007502 GGTGTGGCACGTACGTGTA 60.008 57.895 39.56 29.09 46.90 2.90
2477 4027 0.597118 GGTGTGGCACGTACGTGTAA 60.597 55.000 39.56 28.53 46.90 2.41
2478 4028 0.780002 GTGTGGCACGTACGTGTAAG 59.220 55.000 39.56 21.82 46.90 2.34
2479 4029 0.385029 TGTGGCACGTACGTGTAAGT 59.615 50.000 39.56 9.11 46.90 2.24
2480 4030 1.606189 TGTGGCACGTACGTGTAAGTA 59.394 47.619 39.56 23.96 46.90 2.24
2481 4031 2.228582 TGTGGCACGTACGTGTAAGTAT 59.771 45.455 39.56 7.59 46.90 2.12
2482 4032 2.848302 GTGGCACGTACGTGTAAGTATC 59.152 50.000 39.56 25.10 46.90 2.24
2483 4033 2.159393 TGGCACGTACGTGTAAGTATCC 60.159 50.000 39.56 31.12 46.90 2.59
2484 4034 2.098117 GGCACGTACGTGTAAGTATCCT 59.902 50.000 39.56 5.54 46.90 3.24
2485 4035 3.103738 GCACGTACGTGTAAGTATCCTG 58.896 50.000 39.56 17.71 46.90 3.86
2486 4036 3.103738 CACGTACGTGTAAGTATCCTGC 58.896 50.000 34.48 0.00 40.91 4.85
2487 4037 2.223112 ACGTACGTGTAAGTATCCTGCG 60.223 50.000 22.14 0.00 0.00 5.18
2488 4038 2.724349 GTACGTGTAAGTATCCTGCGG 58.276 52.381 0.00 0.00 0.00 5.69
2489 4039 0.179119 ACGTGTAAGTATCCTGCGGC 60.179 55.000 0.00 0.00 0.00 6.53
2490 4040 0.102481 CGTGTAAGTATCCTGCGGCT 59.898 55.000 0.00 0.00 0.00 5.52
2491 4041 1.571919 GTGTAAGTATCCTGCGGCTG 58.428 55.000 0.00 0.00 0.00 4.85
2492 4042 1.136305 GTGTAAGTATCCTGCGGCTGA 59.864 52.381 8.57 1.77 0.00 4.26
2493 4043 1.409064 TGTAAGTATCCTGCGGCTGAG 59.591 52.381 8.57 0.00 0.00 3.35
2494 4044 1.409427 GTAAGTATCCTGCGGCTGAGT 59.591 52.381 8.57 0.00 0.00 3.41
2495 4045 1.776662 AAGTATCCTGCGGCTGAGTA 58.223 50.000 8.57 0.00 0.00 2.59
2496 4046 1.033574 AGTATCCTGCGGCTGAGTAC 58.966 55.000 8.57 10.10 0.00 2.73
2497 4047 0.032267 GTATCCTGCGGCTGAGTACC 59.968 60.000 8.57 0.00 0.00 3.34
2498 4048 0.396556 TATCCTGCGGCTGAGTACCA 60.397 55.000 8.57 0.00 0.00 3.25
2499 4049 1.050988 ATCCTGCGGCTGAGTACCAT 61.051 55.000 8.57 0.00 0.00 3.55
2500 4050 1.221840 CCTGCGGCTGAGTACCATT 59.778 57.895 8.57 0.00 0.00 3.16
2501 4051 0.392998 CCTGCGGCTGAGTACCATTT 60.393 55.000 8.57 0.00 0.00 2.32
2502 4052 0.729116 CTGCGGCTGAGTACCATTTG 59.271 55.000 0.00 0.00 0.00 2.32
2503 4053 0.036164 TGCGGCTGAGTACCATTTGT 59.964 50.000 0.00 0.00 0.00 2.83
2504 4054 0.727398 GCGGCTGAGTACCATTTGTC 59.273 55.000 0.00 0.00 0.00 3.18
2505 4055 1.676014 GCGGCTGAGTACCATTTGTCT 60.676 52.381 0.00 0.00 0.00 3.41
2506 4056 2.699954 CGGCTGAGTACCATTTGTCTT 58.300 47.619 0.00 0.00 0.00 3.01
2507 4057 3.074412 CGGCTGAGTACCATTTGTCTTT 58.926 45.455 0.00 0.00 0.00 2.52
2508 4058 3.502211 CGGCTGAGTACCATTTGTCTTTT 59.498 43.478 0.00 0.00 0.00 2.27
2509 4059 4.023193 CGGCTGAGTACCATTTGTCTTTTT 60.023 41.667 0.00 0.00 0.00 1.94
2542 4092 8.871125 GGGAGTACCTAAAAATCATCTAGATGA 58.129 37.037 32.16 32.16 43.23 2.92
2574 4124 9.434420 AATTTGTTCTCATTCACTTTGAAAACA 57.566 25.926 0.00 0.00 40.12 2.83
2575 4125 8.824159 TTTGTTCTCATTCACTTTGAAAACAA 57.176 26.923 10.46 10.46 39.53 2.83
2576 4126 8.464770 TTGTTCTCATTCACTTTGAAAACAAG 57.535 30.769 10.46 0.00 37.92 3.16
2577 4127 7.825681 TGTTCTCATTCACTTTGAAAACAAGA 58.174 30.769 2.78 0.00 40.12 3.02
2578 4128 8.303156 TGTTCTCATTCACTTTGAAAACAAGAA 58.697 29.630 2.78 3.16 40.12 2.52
2579 4129 8.587111 GTTCTCATTCACTTTGAAAACAAGAAC 58.413 33.333 13.93 13.93 40.12 3.01
2580 4130 7.825681 TCTCATTCACTTTGAAAACAAGAACA 58.174 30.769 0.00 0.00 40.12 3.18
2581 4131 7.970061 TCTCATTCACTTTGAAAACAAGAACAG 59.030 33.333 0.00 0.00 40.12 3.16
2582 4132 7.825681 TCATTCACTTTGAAAACAAGAACAGA 58.174 30.769 0.00 0.00 40.12 3.41
2583 4133 8.469200 TCATTCACTTTGAAAACAAGAACAGAT 58.531 29.630 0.00 0.00 40.12 2.90
2584 4134 9.734620 CATTCACTTTGAAAACAAGAACAGATA 57.265 29.630 0.00 0.00 40.12 1.98
2585 4135 9.736023 ATTCACTTTGAAAACAAGAACAGATAC 57.264 29.630 0.00 0.00 40.12 2.24
2586 4136 8.275015 TCACTTTGAAAACAAGAACAGATACA 57.725 30.769 0.00 0.00 0.00 2.29
2587 4137 8.735315 TCACTTTGAAAACAAGAACAGATACAA 58.265 29.630 0.00 0.00 0.00 2.41
2588 4138 8.798153 CACTTTGAAAACAAGAACAGATACAAC 58.202 33.333 0.00 0.00 0.00 3.32
2589 4139 7.973944 ACTTTGAAAACAAGAACAGATACAACC 59.026 33.333 0.00 0.00 0.00 3.77
2590 4140 6.385649 TGAAAACAAGAACAGATACAACCC 57.614 37.500 0.00 0.00 0.00 4.11
2591 4141 5.888724 TGAAAACAAGAACAGATACAACCCA 59.111 36.000 0.00 0.00 0.00 4.51
2592 4142 5.767816 AAACAAGAACAGATACAACCCAC 57.232 39.130 0.00 0.00 0.00 4.61
2593 4143 4.431416 ACAAGAACAGATACAACCCACA 57.569 40.909 0.00 0.00 0.00 4.17
2594 4144 4.985538 ACAAGAACAGATACAACCCACAT 58.014 39.130 0.00 0.00 0.00 3.21
2595 4145 5.003804 ACAAGAACAGATACAACCCACATC 58.996 41.667 0.00 0.00 0.00 3.06
2596 4146 4.908601 AGAACAGATACAACCCACATCA 57.091 40.909 0.00 0.00 0.00 3.07
2597 4147 4.836825 AGAACAGATACAACCCACATCAG 58.163 43.478 0.00 0.00 0.00 2.90
2598 4148 2.991250 ACAGATACAACCCACATCAGC 58.009 47.619 0.00 0.00 0.00 4.26
2599 4149 2.305635 ACAGATACAACCCACATCAGCA 59.694 45.455 0.00 0.00 0.00 4.41
2600 4150 2.679837 CAGATACAACCCACATCAGCAC 59.320 50.000 0.00 0.00 0.00 4.40
2601 4151 2.305635 AGATACAACCCACATCAGCACA 59.694 45.455 0.00 0.00 0.00 4.57
2602 4152 1.890876 TACAACCCACATCAGCACAC 58.109 50.000 0.00 0.00 0.00 3.82
2603 4153 0.106769 ACAACCCACATCAGCACACA 60.107 50.000 0.00 0.00 0.00 3.72
2604 4154 0.311790 CAACCCACATCAGCACACAC 59.688 55.000 0.00 0.00 0.00 3.82
2605 4155 1.165907 AACCCACATCAGCACACACG 61.166 55.000 0.00 0.00 0.00 4.49
2606 4156 2.557805 CCACATCAGCACACACGC 59.442 61.111 0.00 0.00 0.00 5.34
2607 4157 2.253051 CCACATCAGCACACACGCA 61.253 57.895 0.00 0.00 0.00 5.24
2608 4158 1.579964 CCACATCAGCACACACGCAT 61.580 55.000 0.00 0.00 0.00 4.73
2609 4159 1.077915 CACATCAGCACACACGCATA 58.922 50.000 0.00 0.00 0.00 3.14
2610 4160 1.667212 CACATCAGCACACACGCATAT 59.333 47.619 0.00 0.00 0.00 1.78
2611 4161 2.096335 CACATCAGCACACACGCATATT 59.904 45.455 0.00 0.00 0.00 1.28
2612 4162 3.309410 CACATCAGCACACACGCATATTA 59.691 43.478 0.00 0.00 0.00 0.98
2613 4163 4.024641 CACATCAGCACACACGCATATTAT 60.025 41.667 0.00 0.00 0.00 1.28
2614 4164 5.177327 CACATCAGCACACACGCATATTATA 59.823 40.000 0.00 0.00 0.00 0.98
2615 4165 5.406477 ACATCAGCACACACGCATATTATAG 59.594 40.000 0.00 0.00 0.00 1.31
2616 4166 3.740832 TCAGCACACACGCATATTATAGC 59.259 43.478 0.00 0.00 0.00 2.97
2617 4167 3.494251 CAGCACACACGCATATTATAGCA 59.506 43.478 0.00 0.00 0.00 3.49
2618 4168 4.152938 CAGCACACACGCATATTATAGCAT 59.847 41.667 0.00 0.00 0.00 3.79
2619 4169 4.389992 AGCACACACGCATATTATAGCATC 59.610 41.667 0.00 0.00 0.00 3.91
2620 4170 4.152223 GCACACACGCATATTATAGCATCA 59.848 41.667 0.00 0.00 0.00 3.07
2621 4171 5.611919 CACACACGCATATTATAGCATCAC 58.388 41.667 0.00 0.00 0.00 3.06
2622 4172 5.177327 CACACACGCATATTATAGCATCACA 59.823 40.000 0.00 0.00 0.00 3.58
2623 4173 5.934043 ACACACGCATATTATAGCATCACAT 59.066 36.000 0.00 0.00 0.00 3.21
2624 4174 6.091305 ACACACGCATATTATAGCATCACATC 59.909 38.462 0.00 0.00 0.00 3.06
2625 4175 5.582269 ACACGCATATTATAGCATCACATCC 59.418 40.000 0.00 0.00 0.00 3.51
2626 4176 5.581874 CACGCATATTATAGCATCACATCCA 59.418 40.000 0.00 0.00 0.00 3.41
2627 4177 6.092533 CACGCATATTATAGCATCACATCCAA 59.907 38.462 0.00 0.00 0.00 3.53
2628 4178 6.825213 ACGCATATTATAGCATCACATCCAAT 59.175 34.615 0.00 0.00 0.00 3.16
2629 4179 7.130269 CGCATATTATAGCATCACATCCAATG 58.870 38.462 0.00 0.00 0.00 2.82
2630 4180 7.423199 GCATATTATAGCATCACATCCAATGG 58.577 38.462 0.00 0.00 33.60 3.16
2631 4181 5.909621 ATTATAGCATCACATCCAATGGC 57.090 39.130 0.00 0.00 33.60 4.40
2632 4182 3.520691 ATAGCATCACATCCAATGGCT 57.479 42.857 0.00 0.00 33.60 4.75
2633 4183 4.645863 ATAGCATCACATCCAATGGCTA 57.354 40.909 0.00 0.00 33.60 3.93
2634 4184 3.520691 AGCATCACATCCAATGGCTAT 57.479 42.857 0.00 0.00 33.60 2.97
2635 4185 4.645863 AGCATCACATCCAATGGCTATA 57.354 40.909 0.00 0.00 33.60 1.31
2636 4186 4.989277 AGCATCACATCCAATGGCTATAA 58.011 39.130 0.00 0.00 33.60 0.98
2637 4187 5.387788 AGCATCACATCCAATGGCTATAAA 58.612 37.500 0.00 0.00 33.60 1.40
2638 4188 5.834742 AGCATCACATCCAATGGCTATAAAA 59.165 36.000 0.00 0.00 33.60 1.52
2639 4189 6.015688 AGCATCACATCCAATGGCTATAAAAG 60.016 38.462 0.00 0.00 33.60 2.27
2640 4190 6.684686 CATCACATCCAATGGCTATAAAAGG 58.315 40.000 0.00 0.00 33.60 3.11
2641 4191 5.765510 TCACATCCAATGGCTATAAAAGGT 58.234 37.500 0.00 0.00 33.60 3.50
2642 4192 5.593909 TCACATCCAATGGCTATAAAAGGTG 59.406 40.000 0.00 0.00 33.60 4.00
2643 4193 5.593909 CACATCCAATGGCTATAAAAGGTGA 59.406 40.000 0.00 0.00 33.60 4.02
2644 4194 6.096705 CACATCCAATGGCTATAAAAGGTGAA 59.903 38.462 0.00 0.00 33.60 3.18
2645 4195 6.840705 ACATCCAATGGCTATAAAAGGTGAAT 59.159 34.615 0.00 0.00 33.60 2.57
2646 4196 6.713762 TCCAATGGCTATAAAAGGTGAATG 57.286 37.500 0.00 0.00 0.00 2.67
2647 4197 6.430864 TCCAATGGCTATAAAAGGTGAATGA 58.569 36.000 0.00 0.00 0.00 2.57
2648 4198 6.547141 TCCAATGGCTATAAAAGGTGAATGAG 59.453 38.462 0.00 0.00 0.00 2.90
2649 4199 6.547141 CCAATGGCTATAAAAGGTGAATGAGA 59.453 38.462 0.00 0.00 0.00 3.27
2650 4200 7.232127 CCAATGGCTATAAAAGGTGAATGAGAT 59.768 37.037 0.00 0.00 0.00 2.75
2651 4201 7.992754 ATGGCTATAAAAGGTGAATGAGATC 57.007 36.000 0.00 0.00 0.00 2.75
2652 4202 6.899089 TGGCTATAAAAGGTGAATGAGATCA 58.101 36.000 0.00 0.00 0.00 2.92
2653 4203 7.345691 TGGCTATAAAAGGTGAATGAGATCAA 58.654 34.615 0.00 0.00 0.00 2.57
2654 4204 7.833682 TGGCTATAAAAGGTGAATGAGATCAAA 59.166 33.333 0.00 0.00 0.00 2.69
2655 4205 8.854117 GGCTATAAAAGGTGAATGAGATCAAAT 58.146 33.333 0.00 0.00 0.00 2.32
2690 4240 7.897575 CTAGATGAGTTCTAGCAAAACTGTT 57.102 36.000 0.32 0.00 45.63 3.16
2691 4241 8.316640 CTAGATGAGTTCTAGCAAAACTGTTT 57.683 34.615 0.00 0.00 45.63 2.83
2692 4242 7.573968 AGATGAGTTCTAGCAAAACTGTTTT 57.426 32.000 12.50 12.50 37.10 2.43
2693 4243 8.677148 AGATGAGTTCTAGCAAAACTGTTTTA 57.323 30.769 17.31 2.86 37.10 1.52
2694 4244 9.289782 AGATGAGTTCTAGCAAAACTGTTTTAT 57.710 29.630 17.31 11.89 37.10 1.40
2695 4245 9.899226 GATGAGTTCTAGCAAAACTGTTTTATT 57.101 29.630 17.31 11.24 37.10 1.40
2705 4255 9.206870 AGCAAAACTGTTTTATTTATGATGGTG 57.793 29.630 17.31 3.73 0.00 4.17
2706 4256 8.442384 GCAAAACTGTTTTATTTATGATGGTGG 58.558 33.333 17.31 2.73 0.00 4.61
2707 4257 9.487790 CAAAACTGTTTTATTTATGATGGTGGT 57.512 29.630 17.31 0.00 0.00 4.16
2708 4258 9.487790 AAAACTGTTTTATTTATGATGGTGGTG 57.512 29.630 16.35 0.00 0.00 4.17
2709 4259 7.775053 ACTGTTTTATTTATGATGGTGGTGT 57.225 32.000 0.00 0.00 0.00 4.16
2710 4260 8.871629 ACTGTTTTATTTATGATGGTGGTGTA 57.128 30.769 0.00 0.00 0.00 2.90
2769 5865 5.509498 ACCCATTATGTTATGTGCAAGTCT 58.491 37.500 0.00 0.00 0.00 3.24
2777 5873 5.001232 TGTTATGTGCAAGTCTAAGTTCCC 58.999 41.667 0.00 0.00 0.00 3.97
2794 5890 9.907229 CTAAGTTCCCTGAAAATTAGATTAGGT 57.093 33.333 0.00 0.00 30.89 3.08
2840 5936 4.196193 CCTTCTCAAACTACCAACACACA 58.804 43.478 0.00 0.00 0.00 3.72
2859 5996 5.991606 CACACACTCTCCTGATAGTTTTTGA 59.008 40.000 0.00 0.00 0.00 2.69
2908 6046 2.093783 GGTTTATCTCTCAAACCGTGCG 59.906 50.000 1.54 0.00 43.94 5.34
2916 6054 2.734606 TCTCAAACCGTGCGTCTAAATG 59.265 45.455 0.00 0.00 0.00 2.32
2933 6071 7.433719 CGTCTAAATGTTGAATTGTTTTCACCA 59.566 33.333 0.00 0.00 0.00 4.17
2934 6072 9.092876 GTCTAAATGTTGAATTGTTTTCACCAA 57.907 29.630 0.00 0.00 0.00 3.67
2938 6076 5.738909 TGTTGAATTGTTTTCACCAATGGT 58.261 33.333 0.00 0.00 35.62 3.55
2942 6080 5.819901 TGAATTGTTTTCACCAATGGTTTCC 59.180 36.000 0.16 0.00 31.02 3.13
2944 6082 4.664150 TGTTTTCACCAATGGTTTCCTC 57.336 40.909 0.16 0.00 31.02 3.71
2967 6105 5.823045 TCGCATAGAGATCTTGAACACTAGA 59.177 40.000 0.00 0.00 0.00 2.43
2972 6110 5.523588 AGAGATCTTGAACACTAGATCCCA 58.476 41.667 14.31 0.00 45.05 4.37
2973 6111 6.142498 AGAGATCTTGAACACTAGATCCCAT 58.858 40.000 14.31 1.79 45.05 4.00
2974 6112 6.041865 AGAGATCTTGAACACTAGATCCCATG 59.958 42.308 14.31 0.00 45.05 3.66
2975 6113 5.664908 AGATCTTGAACACTAGATCCCATGT 59.335 40.000 14.31 0.00 45.05 3.21
2976 6114 5.762179 TCTTGAACACTAGATCCCATGTT 57.238 39.130 0.00 5.93 37.97 2.71
2977 6115 6.867519 TCTTGAACACTAGATCCCATGTTA 57.132 37.500 0.00 0.00 35.47 2.41
2978 6116 7.437713 TCTTGAACACTAGATCCCATGTTAT 57.562 36.000 0.00 0.00 35.47 1.89
2979 6117 7.861629 TCTTGAACACTAGATCCCATGTTATT 58.138 34.615 0.00 0.00 35.47 1.40
2986 6124 9.561069 ACACTAGATCCCATGTTATTATGTTTC 57.439 33.333 0.00 0.00 0.00 2.78
2990 6128 5.977171 TCCCATGTTATTATGTTTCGACG 57.023 39.130 0.00 0.00 0.00 5.12
3031 6169 5.722021 AAACCACACAAGAAAACAGAACT 57.278 34.783 0.00 0.00 0.00 3.01
3050 6188 6.149973 CAGAACTGAGAGCATGTTTTATTCCA 59.850 38.462 0.00 0.00 0.00 3.53
3059 6197 6.789262 AGCATGTTTTATTCCATTTCGAGAG 58.211 36.000 0.00 0.00 0.00 3.20
3098 6239 2.749076 GCCAACATGAGAAGTATGTGCA 59.251 45.455 0.00 0.00 38.67 4.57
3156 6299 3.244105 GTGATGCACGAGCGTGTT 58.756 55.556 22.06 11.64 46.90 3.32
3245 6392 1.728074 CGCGTTTTTCCCTTTCCGC 60.728 57.895 0.00 0.00 37.91 5.54
3367 6519 3.108343 CGAGAGGCACGACCGTAT 58.892 61.111 0.00 0.00 46.52 3.06
3375 6527 1.719709 CACGACCGTATCTCTCGCA 59.280 57.895 0.00 0.00 0.00 5.10
3500 6658 5.714806 GTCCAAATCCTAAGGAAAACATGGA 59.285 40.000 0.00 0.00 34.34 3.41
3504 6662 7.387673 CCAAATCCTAAGGAAAACATGGAAAAC 59.612 37.037 0.00 0.00 34.34 2.43
3506 6664 5.459505 TCCTAAGGAAAACATGGAAAACCA 58.540 37.500 0.00 0.00 0.00 3.67
3512 6670 6.899089 AGGAAAACATGGAAAACCAGAAAAT 58.101 32.000 0.00 0.00 0.00 1.82
3514 6687 7.282901 AGGAAAACATGGAAAACCAGAAAATTG 59.717 33.333 0.00 0.00 0.00 2.32
3537 6710 5.710099 TGAAATCATCTAAAAGCCGAAACCT 59.290 36.000 0.00 0.00 0.00 3.50
3538 6711 5.567138 AATCATCTAAAAGCCGAAACCTG 57.433 39.130 0.00 0.00 0.00 4.00
3721 6906 0.698818 GGATGGGTCCAAGACAAGGT 59.301 55.000 0.00 0.00 44.42 3.50
3729 6914 1.003718 CAAGACAAGGTCCCCGGTC 60.004 63.158 0.00 0.00 34.53 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.825908 AGGGAAACTGGGAAAGCATAA 57.174 42.857 0.00 0.00 0.00 1.90
8 9 5.076873 CAACTATTCAAGGGAAACTGGGAA 58.923 41.667 0.00 0.00 36.43 3.97
9 10 4.352595 TCAACTATTCAAGGGAAACTGGGA 59.647 41.667 0.00 0.00 36.43 4.37
10 11 4.662278 TCAACTATTCAAGGGAAACTGGG 58.338 43.478 0.00 0.00 36.43 4.45
11 12 5.393461 GCATCAACTATTCAAGGGAAACTGG 60.393 44.000 0.00 0.00 36.43 4.00
12 13 5.416952 AGCATCAACTATTCAAGGGAAACTG 59.583 40.000 0.00 0.00 36.43 3.16
13 14 5.574188 AGCATCAACTATTCAAGGGAAACT 58.426 37.500 0.00 0.00 36.43 2.66
14 15 5.904362 AGCATCAACTATTCAAGGGAAAC 57.096 39.130 0.00 0.00 36.43 2.78
15 16 6.151648 CAGAAGCATCAACTATTCAAGGGAAA 59.848 38.462 0.00 0.00 36.43 3.13
16 17 5.649395 CAGAAGCATCAACTATTCAAGGGAA 59.351 40.000 0.00 0.00 37.45 3.97
17 18 5.188434 CAGAAGCATCAACTATTCAAGGGA 58.812 41.667 0.00 0.00 0.00 4.20
18 19 4.201990 GCAGAAGCATCAACTATTCAAGGG 60.202 45.833 0.00 0.00 41.58 3.95
19 20 4.639310 AGCAGAAGCATCAACTATTCAAGG 59.361 41.667 0.00 0.00 45.49 3.61
20 21 5.502058 CGAGCAGAAGCATCAACTATTCAAG 60.502 44.000 0.00 0.00 45.49 3.02
21 22 4.330894 CGAGCAGAAGCATCAACTATTCAA 59.669 41.667 0.00 0.00 45.49 2.69
22 23 3.867493 CGAGCAGAAGCATCAACTATTCA 59.133 43.478 0.00 0.00 45.49 2.57
23 24 3.868077 ACGAGCAGAAGCATCAACTATTC 59.132 43.478 0.00 0.00 45.49 1.75
24 25 3.866651 ACGAGCAGAAGCATCAACTATT 58.133 40.909 0.00 0.00 45.49 1.73
25 26 3.533606 ACGAGCAGAAGCATCAACTAT 57.466 42.857 0.00 0.00 45.49 2.12
26 27 4.097892 TGATACGAGCAGAAGCATCAACTA 59.902 41.667 0.00 0.00 45.49 2.24
27 28 3.118992 TGATACGAGCAGAAGCATCAACT 60.119 43.478 0.00 0.00 45.49 3.16
28 29 3.190079 TGATACGAGCAGAAGCATCAAC 58.810 45.455 0.00 0.00 45.49 3.18
29 30 3.525268 TGATACGAGCAGAAGCATCAA 57.475 42.857 0.00 0.00 45.49 2.57
30 31 3.181472 ACATGATACGAGCAGAAGCATCA 60.181 43.478 0.00 0.00 45.49 3.07
31 32 3.388308 ACATGATACGAGCAGAAGCATC 58.612 45.455 0.00 0.00 45.49 3.91
32 33 3.465742 ACATGATACGAGCAGAAGCAT 57.534 42.857 0.00 0.00 45.49 3.79
33 34 2.931969 CAACATGATACGAGCAGAAGCA 59.068 45.455 0.00 0.00 45.49 3.91
34 35 2.932614 ACAACATGATACGAGCAGAAGC 59.067 45.455 0.00 0.00 42.56 3.86
35 36 5.536554 AAACAACATGATACGAGCAGAAG 57.463 39.130 0.00 0.00 0.00 2.85
36 37 6.394809 TCTAAACAACATGATACGAGCAGAA 58.605 36.000 0.00 0.00 0.00 3.02
37 38 5.961272 TCTAAACAACATGATACGAGCAGA 58.039 37.500 0.00 0.00 0.00 4.26
38 39 6.834959 ATCTAAACAACATGATACGAGCAG 57.165 37.500 0.00 0.00 0.00 4.24
39 40 6.037062 CCAATCTAAACAACATGATACGAGCA 59.963 38.462 0.00 0.00 0.00 4.26
40 41 6.422223 CCAATCTAAACAACATGATACGAGC 58.578 40.000 0.00 0.00 0.00 5.03
41 42 6.511767 GCCCAATCTAAACAACATGATACGAG 60.512 42.308 0.00 0.00 0.00 4.18
42 43 5.295787 GCCCAATCTAAACAACATGATACGA 59.704 40.000 0.00 0.00 0.00 3.43
43 44 5.510671 GCCCAATCTAAACAACATGATACG 58.489 41.667 0.00 0.00 0.00 3.06
44 45 5.295787 TCGCCCAATCTAAACAACATGATAC 59.704 40.000 0.00 0.00 0.00 2.24
45 46 5.432645 TCGCCCAATCTAAACAACATGATA 58.567 37.500 0.00 0.00 0.00 2.15
46 47 4.269183 TCGCCCAATCTAAACAACATGAT 58.731 39.130 0.00 0.00 0.00 2.45
47 48 3.680490 TCGCCCAATCTAAACAACATGA 58.320 40.909 0.00 0.00 0.00 3.07
48 49 4.414852 CTTCGCCCAATCTAAACAACATG 58.585 43.478 0.00 0.00 0.00 3.21
49 50 3.119495 GCTTCGCCCAATCTAAACAACAT 60.119 43.478 0.00 0.00 0.00 2.71
50 51 2.227865 GCTTCGCCCAATCTAAACAACA 59.772 45.455 0.00 0.00 0.00 3.33
51 52 2.727916 CGCTTCGCCCAATCTAAACAAC 60.728 50.000 0.00 0.00 0.00 3.32
52 53 1.466950 CGCTTCGCCCAATCTAAACAA 59.533 47.619 0.00 0.00 0.00 2.83
53 54 1.083489 CGCTTCGCCCAATCTAAACA 58.917 50.000 0.00 0.00 0.00 2.83
54 55 0.377203 CCGCTTCGCCCAATCTAAAC 59.623 55.000 0.00 0.00 0.00 2.01
55 56 0.035820 ACCGCTTCGCCCAATCTAAA 60.036 50.000 0.00 0.00 0.00 1.85
56 57 0.825410 TACCGCTTCGCCCAATCTAA 59.175 50.000 0.00 0.00 0.00 2.10
57 58 0.387929 CTACCGCTTCGCCCAATCTA 59.612 55.000 0.00 0.00 0.00 1.98
58 59 1.144057 CTACCGCTTCGCCCAATCT 59.856 57.895 0.00 0.00 0.00 2.40
59 60 0.249911 ATCTACCGCTTCGCCCAATC 60.250 55.000 0.00 0.00 0.00 2.67
60 61 0.180406 AATCTACCGCTTCGCCCAAT 59.820 50.000 0.00 0.00 0.00 3.16
61 62 0.742990 CAATCTACCGCTTCGCCCAA 60.743 55.000 0.00 0.00 0.00 4.12
62 63 1.153449 CAATCTACCGCTTCGCCCA 60.153 57.895 0.00 0.00 0.00 5.36
63 64 0.461339 TTCAATCTACCGCTTCGCCC 60.461 55.000 0.00 0.00 0.00 6.13
64 65 0.931005 CTTCAATCTACCGCTTCGCC 59.069 55.000 0.00 0.00 0.00 5.54
65 66 0.301987 GCTTCAATCTACCGCTTCGC 59.698 55.000 0.00 0.00 0.00 4.70
66 67 1.590238 CTGCTTCAATCTACCGCTTCG 59.410 52.381 0.00 0.00 0.00 3.79
67 68 2.622436 ACTGCTTCAATCTACCGCTTC 58.378 47.619 0.00 0.00 0.00 3.86
68 69 2.744202 CAACTGCTTCAATCTACCGCTT 59.256 45.455 0.00 0.00 0.00 4.68
69 70 2.289694 ACAACTGCTTCAATCTACCGCT 60.290 45.455 0.00 0.00 0.00 5.52
70 71 2.076863 ACAACTGCTTCAATCTACCGC 58.923 47.619 0.00 0.00 0.00 5.68
71 72 2.345641 CGACAACTGCTTCAATCTACCG 59.654 50.000 0.00 0.00 0.00 4.02
72 73 3.326747 ACGACAACTGCTTCAATCTACC 58.673 45.455 0.00 0.00 0.00 3.18
73 74 3.368236 GGACGACAACTGCTTCAATCTAC 59.632 47.826 0.00 0.00 0.00 2.59
74 75 3.006430 TGGACGACAACTGCTTCAATCTA 59.994 43.478 0.00 0.00 0.00 1.98
75 76 2.224281 TGGACGACAACTGCTTCAATCT 60.224 45.455 0.00 0.00 0.00 2.40
76 77 2.143122 TGGACGACAACTGCTTCAATC 58.857 47.619 0.00 0.00 0.00 2.67
77 78 2.254546 TGGACGACAACTGCTTCAAT 57.745 45.000 0.00 0.00 0.00 2.57
78 79 2.031258 TTGGACGACAACTGCTTCAA 57.969 45.000 0.00 0.00 33.18 2.69
79 80 2.254546 ATTGGACGACAACTGCTTCA 57.745 45.000 0.00 0.00 42.94 3.02
80 81 2.808543 AGAATTGGACGACAACTGCTTC 59.191 45.455 0.00 0.00 42.94 3.86
81 82 2.549754 CAGAATTGGACGACAACTGCTT 59.450 45.455 0.00 0.00 42.94 3.91
82 83 2.146342 CAGAATTGGACGACAACTGCT 58.854 47.619 0.00 0.00 42.94 4.24
83 84 2.601481 CAGAATTGGACGACAACTGC 57.399 50.000 0.00 0.00 42.94 4.40
103 104 9.618410 GCGTTCATATATGCAAAAATTTTGTAC 57.382 29.630 18.28 4.98 0.00 2.90
104 105 9.579768 AGCGTTCATATATGCAAAAATTTTGTA 57.420 25.926 18.28 14.97 32.39 2.41
105 106 8.382130 CAGCGTTCATATATGCAAAAATTTTGT 58.618 29.630 18.28 3.91 32.39 2.83
106 107 8.593842 TCAGCGTTCATATATGCAAAAATTTTG 58.406 29.630 13.64 13.64 32.39 2.44
107 108 8.700722 TCAGCGTTCATATATGCAAAAATTTT 57.299 26.923 7.92 0.00 32.39 1.82
108 109 8.594687 GTTCAGCGTTCATATATGCAAAAATTT 58.405 29.630 7.92 0.00 32.39 1.82
109 110 7.975616 AGTTCAGCGTTCATATATGCAAAAATT 59.024 29.630 7.92 0.00 32.39 1.82
110 111 7.483307 AGTTCAGCGTTCATATATGCAAAAAT 58.517 30.769 7.92 0.00 32.39 1.82
111 112 6.851609 AGTTCAGCGTTCATATATGCAAAAA 58.148 32.000 7.92 0.00 32.39 1.94
112 113 6.435430 AGTTCAGCGTTCATATATGCAAAA 57.565 33.333 7.92 0.00 32.39 2.44
113 114 6.093357 TGAAGTTCAGCGTTCATATATGCAAA 59.907 34.615 7.92 0.00 32.39 3.68
114 115 5.584251 TGAAGTTCAGCGTTCATATATGCAA 59.416 36.000 7.92 1.24 32.39 4.08
115 116 5.115480 TGAAGTTCAGCGTTCATATATGCA 58.885 37.500 7.92 0.00 32.39 3.96
116 117 5.657470 TGAAGTTCAGCGTTCATATATGC 57.343 39.130 7.92 0.00 0.00 3.14
121 122 8.978539 GTTCATATATGAAGTTCAGCGTTCATA 58.021 33.333 25.14 7.12 46.44 2.15
122 123 7.306807 CGTTCATATATGAAGTTCAGCGTTCAT 60.307 37.037 25.14 3.29 46.44 2.57
123 124 6.019881 CGTTCATATATGAAGTTCAGCGTTCA 60.020 38.462 25.14 0.10 46.44 3.18
124 125 6.019801 ACGTTCATATATGAAGTTCAGCGTTC 60.020 38.462 25.14 10.71 46.44 3.95
125 126 5.810587 ACGTTCATATATGAAGTTCAGCGTT 59.189 36.000 25.14 12.90 46.44 4.84
126 127 5.348986 ACGTTCATATATGAAGTTCAGCGT 58.651 37.500 25.14 24.02 46.44 5.07
127 128 5.890110 ACGTTCATATATGAAGTTCAGCG 57.110 39.130 25.14 23.48 46.44 5.18
142 143 7.973944 GCCATAAGGAAAAGATTTAACGTTCAT 59.026 33.333 2.82 0.00 36.89 2.57
143 144 7.040340 TGCCATAAGGAAAAGATTTAACGTTCA 60.040 33.333 2.82 0.00 36.89 3.18
144 145 7.309920 TGCCATAAGGAAAAGATTTAACGTTC 58.690 34.615 2.82 0.00 36.89 3.95
145 146 7.222000 TGCCATAAGGAAAAGATTTAACGTT 57.778 32.000 5.88 5.88 36.89 3.99
146 147 6.827586 TGCCATAAGGAAAAGATTTAACGT 57.172 33.333 0.00 0.00 36.89 3.99
147 148 8.527567 TTTTGCCATAAGGAAAAGATTTAACG 57.472 30.769 0.00 0.00 43.42 3.18
175 176 4.043859 GCCCCGGGCCTAATTTTT 57.956 55.556 18.83 0.00 44.06 1.94
185 186 3.963124 AATTGGAGCAAGCCCCGGG 62.963 63.158 15.80 15.80 0.00 5.73
186 187 2.362889 AATTGGAGCAAGCCCCGG 60.363 61.111 0.00 0.00 0.00 5.73
187 188 1.379044 AGAATTGGAGCAAGCCCCG 60.379 57.895 0.00 0.00 0.00 5.73
188 189 2.196319 CAGAATTGGAGCAAGCCCC 58.804 57.895 0.00 0.00 0.00 5.80
211 212 6.560168 TTCACATTTTGAGAAGCAGTGGCG 62.560 45.833 0.00 0.00 39.55 5.69
212 213 2.294233 TCACATTTTGAGAAGCAGTGGC 59.706 45.455 0.00 0.00 41.61 5.01
213 214 4.543692 CTTCACATTTTGAGAAGCAGTGG 58.456 43.478 2.53 0.00 38.02 4.00
219 220 6.072286 ACACCTATGCTTCACATTTTGAGAAG 60.072 38.462 9.45 9.45 44.37 2.85
220 221 5.769662 ACACCTATGCTTCACATTTTGAGAA 59.230 36.000 0.00 0.00 40.38 2.87
221 222 5.181811 CACACCTATGCTTCACATTTTGAGA 59.818 40.000 0.00 0.00 40.38 3.27
238 239 3.025262 GGGAAACACAAAACCACACCTA 58.975 45.455 0.00 0.00 0.00 3.08
241 242 4.722361 TTAGGGAAACACAAAACCACAC 57.278 40.909 0.00 0.00 0.00 3.82
425 426 7.806690 TCTCAACAGTTACATTCATTTACTGC 58.193 34.615 0.00 0.00 39.77 4.40
433 434 8.050778 AGTTTTGTTCTCAACAGTTACATTCA 57.949 30.769 0.00 0.00 43.27 2.57
527 531 5.499004 TTTGTGCCTAGGATTAAGTCACT 57.501 39.130 14.75 0.00 0.00 3.41
528 532 7.769044 TCTTATTTGTGCCTAGGATTAAGTCAC 59.231 37.037 14.75 9.69 0.00 3.67
651 681 6.406961 CCATCAGCTAGTTGTACTATCAACCA 60.407 42.308 6.47 0.00 45.90 3.67
655 685 6.791867 AACCATCAGCTAGTTGTACTATCA 57.208 37.500 6.47 0.00 29.08 2.15
656 686 9.843334 GTATAACCATCAGCTAGTTGTACTATC 57.157 37.037 6.47 0.00 36.05 2.08
665 695 6.216569 CAACATCGTATAACCATCAGCTAGT 58.783 40.000 0.00 0.00 0.00 2.57
696 726 7.231925 TGTCGGCTGTAAGATTAACCATAGATA 59.768 37.037 0.00 0.00 34.07 1.98
746 804 8.573885 TGCGTCATATAGTAATAAAGTAGCACT 58.426 33.333 0.00 0.00 0.00 4.40
780 838 5.043903 GCGCTTCTAGACATTATGTGAGAA 58.956 41.667 1.24 10.29 31.78 2.87
807 865 1.079750 GAGAGAAAAGGAGCCGCGT 60.080 57.895 4.92 0.00 0.00 6.01
808 866 1.811679 GGAGAGAAAAGGAGCCGCG 60.812 63.158 0.00 0.00 0.00 6.46
816 874 4.093556 GCTAACATGAACGGGAGAGAAAAG 59.906 45.833 0.00 0.00 0.00 2.27
818 876 3.007506 TGCTAACATGAACGGGAGAGAAA 59.992 43.478 0.00 0.00 0.00 2.52
875 933 8.773404 ACATTTAGAGCGAGTACAATAAGTTT 57.227 30.769 0.00 0.00 0.00 2.66
906 964 0.389948 CCGGTTCACTAGTGCCACTC 60.390 60.000 18.45 9.75 0.00 3.51
939 997 0.396435 TGTACTTGGCCCTGTCACAG 59.604 55.000 0.00 0.00 0.00 3.66
948 1006 0.464452 AGCGGAGTATGTACTTGGCC 59.536 55.000 0.00 0.00 36.50 5.36
979 1052 8.857098 GGATAATGGTTATCACAGTGAGTAGTA 58.143 37.037 9.64 0.00 43.00 1.82
980 1053 7.344612 TGGATAATGGTTATCACAGTGAGTAGT 59.655 37.037 9.64 0.00 43.00 2.73
990 1225 7.448161 TGATGTGGAATGGATAATGGTTATCAC 59.552 37.037 10.77 0.00 43.00 3.06
1001 1236 4.385199 GGTGGTCTTGATGTGGAATGGATA 60.385 45.833 0.00 0.00 0.00 2.59
1042 1298 2.217393 CGAAGCTCATCGTGATTGCTAC 59.783 50.000 0.00 0.00 38.01 3.58
1304 1569 3.533691 CGTCTTCTTCGTCGGCGC 61.534 66.667 3.52 0.00 38.14 6.53
1305 1570 2.874780 CCGTCTTCTTCGTCGGCG 60.875 66.667 1.15 1.15 36.68 6.46
1307 1572 2.874780 CGCCGTCTTCTTCGTCGG 60.875 66.667 0.00 0.00 44.86 4.79
1375 1643 2.895372 CAAGGTACATCCCGCCGC 60.895 66.667 0.00 0.00 36.75 6.53
1387 1655 1.750399 GCCCGTGATCATGCAAGGT 60.750 57.895 9.58 0.00 35.93 3.50
2107 2396 0.247460 CCGGCTCTCATGTCTGTCAA 59.753 55.000 0.00 0.00 0.00 3.18
2111 2400 2.584418 CGCCGGCTCTCATGTCTG 60.584 66.667 26.68 0.00 0.00 3.51
2224 3152 2.431260 GCCAAAGTCGGCGTCGTA 60.431 61.111 10.18 0.00 43.52 3.43
2389 3323 3.670637 ATGCATGTGCGAGCTCGGT 62.671 57.895 35.10 2.58 45.83 4.69
2443 3993 3.000523 GCCACACCAAACATACGTATACG 59.999 47.826 23.24 23.24 46.33 3.06
2445 3995 3.933955 GTGCCACACCAAACATACGTATA 59.066 43.478 7.96 0.00 0.00 1.47
2447 3997 2.144730 GTGCCACACCAAACATACGTA 58.855 47.619 0.00 0.00 0.00 3.57
2448 3998 0.948678 GTGCCACACCAAACATACGT 59.051 50.000 0.00 0.00 0.00 3.57
2449 3999 0.110419 CGTGCCACACCAAACATACG 60.110 55.000 0.00 0.00 0.00 3.06
2450 4000 0.948678 ACGTGCCACACCAAACATAC 59.051 50.000 0.00 0.00 0.00 2.39
2451 4001 2.144730 GTACGTGCCACACCAAACATA 58.855 47.619 0.00 0.00 0.00 2.29
2452 4002 0.948678 GTACGTGCCACACCAAACAT 59.051 50.000 0.00 0.00 0.00 2.71
2453 4003 1.429927 CGTACGTGCCACACCAAACA 61.430 55.000 7.22 0.00 0.00 2.83
2454 4004 1.277440 CGTACGTGCCACACCAAAC 59.723 57.895 7.22 0.00 0.00 2.93
2455 4005 1.153409 ACGTACGTGCCACACCAAA 60.153 52.632 22.14 0.00 0.00 3.28
2456 4006 1.883544 CACGTACGTGCCACACCAA 60.884 57.895 32.93 0.00 39.39 3.67
2457 4007 2.279584 CACGTACGTGCCACACCA 60.280 61.111 32.93 0.00 39.39 4.17
2483 4033 0.729116 CAAATGGTACTCAGCCGCAG 59.271 55.000 0.00 0.00 0.00 5.18
2484 4034 0.036164 ACAAATGGTACTCAGCCGCA 59.964 50.000 0.00 0.00 0.00 5.69
2485 4035 0.727398 GACAAATGGTACTCAGCCGC 59.273 55.000 0.00 0.00 0.00 6.53
2486 4036 2.386661 AGACAAATGGTACTCAGCCG 57.613 50.000 0.00 0.00 0.00 5.52
2487 4037 5.453567 AAAAAGACAAATGGTACTCAGCC 57.546 39.130 0.00 0.00 0.00 4.85
2515 4065 8.875168 CATCTAGATGATTTTTAGGTACTCCCT 58.125 37.037 25.78 0.00 43.27 4.20
2516 4066 8.871125 TCATCTAGATGATTTTTAGGTACTCCC 58.129 37.037 27.93 0.00 42.42 4.30
2517 4067 9.921637 CTCATCTAGATGATTTTTAGGTACTCC 57.078 37.037 30.74 0.00 45.74 3.85
2548 4098 9.434420 TGTTTTCAAAGTGAATGAGAACAAATT 57.566 25.926 9.36 0.00 44.18 1.82
2552 4102 7.825681 TCTTGTTTTCAAAGTGAATGAGAACA 58.174 30.769 8.11 8.11 44.94 3.18
2553 4103 8.587111 GTTCTTGTTTTCAAAGTGAATGAGAAC 58.413 33.333 13.90 13.90 40.44 3.01
2554 4104 8.303156 TGTTCTTGTTTTCAAAGTGAATGAGAA 58.697 29.630 0.00 0.00 39.47 2.87
2555 4105 7.825681 TGTTCTTGTTTTCAAAGTGAATGAGA 58.174 30.769 0.00 0.00 39.47 3.27
2556 4106 7.970061 TCTGTTCTTGTTTTCAAAGTGAATGAG 59.030 33.333 0.00 0.00 39.47 2.90
2557 4107 7.825681 TCTGTTCTTGTTTTCAAAGTGAATGA 58.174 30.769 0.00 0.00 39.47 2.57
2558 4108 8.638685 ATCTGTTCTTGTTTTCAAAGTGAATG 57.361 30.769 0.00 0.00 39.47 2.67
2559 4109 9.736023 GTATCTGTTCTTGTTTTCAAAGTGAAT 57.264 29.630 0.00 0.00 39.47 2.57
2560 4110 8.735315 TGTATCTGTTCTTGTTTTCAAAGTGAA 58.265 29.630 0.00 0.00 39.47 3.18
2561 4111 8.275015 TGTATCTGTTCTTGTTTTCAAAGTGA 57.725 30.769 0.00 0.00 39.47 3.41
2562 4112 8.798153 GTTGTATCTGTTCTTGTTTTCAAAGTG 58.202 33.333 0.00 0.00 39.47 3.16
2563 4113 7.973944 GGTTGTATCTGTTCTTGTTTTCAAAGT 59.026 33.333 0.00 0.00 39.47 2.66
2564 4114 7.435192 GGGTTGTATCTGTTCTTGTTTTCAAAG 59.565 37.037 0.00 0.00 39.47 2.77
2565 4115 7.093727 TGGGTTGTATCTGTTCTTGTTTTCAAA 60.094 33.333 0.00 0.00 39.47 2.69
2566 4116 6.378564 TGGGTTGTATCTGTTCTTGTTTTCAA 59.621 34.615 0.00 0.00 38.21 2.69
2567 4117 5.888724 TGGGTTGTATCTGTTCTTGTTTTCA 59.111 36.000 0.00 0.00 0.00 2.69
2568 4118 6.183360 TGTGGGTTGTATCTGTTCTTGTTTTC 60.183 38.462 0.00 0.00 0.00 2.29
2569 4119 5.654650 TGTGGGTTGTATCTGTTCTTGTTTT 59.345 36.000 0.00 0.00 0.00 2.43
2570 4120 5.197451 TGTGGGTTGTATCTGTTCTTGTTT 58.803 37.500 0.00 0.00 0.00 2.83
2571 4121 4.787551 TGTGGGTTGTATCTGTTCTTGTT 58.212 39.130 0.00 0.00 0.00 2.83
2572 4122 4.431416 TGTGGGTTGTATCTGTTCTTGT 57.569 40.909 0.00 0.00 0.00 3.16
2573 4123 5.003160 TGATGTGGGTTGTATCTGTTCTTG 58.997 41.667 0.00 0.00 0.00 3.02
2574 4124 5.241403 TGATGTGGGTTGTATCTGTTCTT 57.759 39.130 0.00 0.00 0.00 2.52
2575 4125 4.836825 CTGATGTGGGTTGTATCTGTTCT 58.163 43.478 0.00 0.00 0.00 3.01
2576 4126 3.375299 GCTGATGTGGGTTGTATCTGTTC 59.625 47.826 0.00 0.00 0.00 3.18
2577 4127 3.244875 TGCTGATGTGGGTTGTATCTGTT 60.245 43.478 0.00 0.00 0.00 3.16
2578 4128 2.305635 TGCTGATGTGGGTTGTATCTGT 59.694 45.455 0.00 0.00 0.00 3.41
2579 4129 2.679837 GTGCTGATGTGGGTTGTATCTG 59.320 50.000 0.00 0.00 0.00 2.90
2580 4130 2.305635 TGTGCTGATGTGGGTTGTATCT 59.694 45.455 0.00 0.00 0.00 1.98
2581 4131 2.420022 GTGTGCTGATGTGGGTTGTATC 59.580 50.000 0.00 0.00 0.00 2.24
2582 4132 2.224744 TGTGTGCTGATGTGGGTTGTAT 60.225 45.455 0.00 0.00 0.00 2.29
2583 4133 1.141858 TGTGTGCTGATGTGGGTTGTA 59.858 47.619 0.00 0.00 0.00 2.41
2584 4134 0.106769 TGTGTGCTGATGTGGGTTGT 60.107 50.000 0.00 0.00 0.00 3.32
2585 4135 0.311790 GTGTGTGCTGATGTGGGTTG 59.688 55.000 0.00 0.00 0.00 3.77
2586 4136 1.165907 CGTGTGTGCTGATGTGGGTT 61.166 55.000 0.00 0.00 0.00 4.11
2587 4137 1.597854 CGTGTGTGCTGATGTGGGT 60.598 57.895 0.00 0.00 0.00 4.51
2588 4138 2.969806 GCGTGTGTGCTGATGTGGG 61.970 63.158 0.00 0.00 0.00 4.61
2589 4139 1.579964 ATGCGTGTGTGCTGATGTGG 61.580 55.000 0.00 0.00 35.36 4.17
2590 4140 1.077915 TATGCGTGTGTGCTGATGTG 58.922 50.000 0.00 0.00 35.36 3.21
2591 4141 2.028420 ATATGCGTGTGTGCTGATGT 57.972 45.000 0.00 0.00 35.36 3.06
2592 4142 4.737353 ATAATATGCGTGTGTGCTGATG 57.263 40.909 0.00 0.00 35.36 3.07
2593 4143 4.389992 GCTATAATATGCGTGTGTGCTGAT 59.610 41.667 0.00 0.00 35.36 2.90
2594 4144 3.740832 GCTATAATATGCGTGTGTGCTGA 59.259 43.478 0.00 0.00 35.36 4.26
2595 4145 3.494251 TGCTATAATATGCGTGTGTGCTG 59.506 43.478 0.00 0.00 35.36 4.41
2596 4146 3.727726 TGCTATAATATGCGTGTGTGCT 58.272 40.909 0.00 0.00 35.36 4.40
2597 4147 4.152223 TGATGCTATAATATGCGTGTGTGC 59.848 41.667 0.00 0.00 0.00 4.57
2598 4148 5.177327 TGTGATGCTATAATATGCGTGTGTG 59.823 40.000 0.00 0.00 0.00 3.82
2599 4149 5.296748 TGTGATGCTATAATATGCGTGTGT 58.703 37.500 0.00 0.00 0.00 3.72
2600 4150 5.844301 TGTGATGCTATAATATGCGTGTG 57.156 39.130 0.00 0.00 0.00 3.82
2601 4151 5.582269 GGATGTGATGCTATAATATGCGTGT 59.418 40.000 0.00 0.00 0.00 4.49
2602 4152 5.581874 TGGATGTGATGCTATAATATGCGTG 59.418 40.000 0.00 0.00 0.00 5.34
2603 4153 5.733676 TGGATGTGATGCTATAATATGCGT 58.266 37.500 0.00 0.00 0.00 5.24
2604 4154 6.667007 TTGGATGTGATGCTATAATATGCG 57.333 37.500 0.00 0.00 0.00 4.73
2605 4155 7.423199 CCATTGGATGTGATGCTATAATATGC 58.577 38.462 0.00 0.00 0.00 3.14
2606 4156 7.284716 AGCCATTGGATGTGATGCTATAATATG 59.715 37.037 6.95 0.00 0.00 1.78
2607 4157 7.351952 AGCCATTGGATGTGATGCTATAATAT 58.648 34.615 6.95 0.00 0.00 1.28
2608 4158 6.724351 AGCCATTGGATGTGATGCTATAATA 58.276 36.000 6.95 0.00 0.00 0.98
2609 4159 5.577100 AGCCATTGGATGTGATGCTATAAT 58.423 37.500 6.95 0.00 0.00 1.28
2610 4160 4.989277 AGCCATTGGATGTGATGCTATAA 58.011 39.130 6.95 0.00 0.00 0.98
2611 4161 4.645863 AGCCATTGGATGTGATGCTATA 57.354 40.909 6.95 0.00 0.00 1.31
2612 4162 3.520691 AGCCATTGGATGTGATGCTAT 57.479 42.857 6.95 0.00 0.00 2.97
2613 4163 4.645863 ATAGCCATTGGATGTGATGCTA 57.354 40.909 6.95 0.00 0.00 3.49
2614 4164 3.520691 ATAGCCATTGGATGTGATGCT 57.479 42.857 6.95 0.00 0.00 3.79
2615 4165 5.710513 TTTATAGCCATTGGATGTGATGC 57.289 39.130 6.95 0.00 0.00 3.91
2616 4166 6.266103 ACCTTTTATAGCCATTGGATGTGATG 59.734 38.462 6.95 0.00 0.00 3.07
2617 4167 6.266103 CACCTTTTATAGCCATTGGATGTGAT 59.734 38.462 6.95 0.00 0.00 3.06
2618 4168 5.593909 CACCTTTTATAGCCATTGGATGTGA 59.406 40.000 6.95 0.00 0.00 3.58
2619 4169 5.593909 TCACCTTTTATAGCCATTGGATGTG 59.406 40.000 6.95 2.95 0.00 3.21
2620 4170 5.765510 TCACCTTTTATAGCCATTGGATGT 58.234 37.500 6.95 0.10 0.00 3.06
2621 4171 6.713762 TTCACCTTTTATAGCCATTGGATG 57.286 37.500 6.95 0.00 0.00 3.51
2622 4172 7.068702 TCATTCACCTTTTATAGCCATTGGAT 58.931 34.615 6.95 1.78 0.00 3.41
2623 4173 6.430864 TCATTCACCTTTTATAGCCATTGGA 58.569 36.000 6.95 0.00 0.00 3.53
2624 4174 6.547141 TCTCATTCACCTTTTATAGCCATTGG 59.453 38.462 0.00 0.00 0.00 3.16
2625 4175 7.572523 TCTCATTCACCTTTTATAGCCATTG 57.427 36.000 0.00 0.00 0.00 2.82
2626 4176 8.000709 TGATCTCATTCACCTTTTATAGCCATT 58.999 33.333 0.00 0.00 0.00 3.16
2627 4177 7.520798 TGATCTCATTCACCTTTTATAGCCAT 58.479 34.615 0.00 0.00 0.00 4.40
2628 4178 6.899089 TGATCTCATTCACCTTTTATAGCCA 58.101 36.000 0.00 0.00 0.00 4.75
2629 4179 7.807977 TTGATCTCATTCACCTTTTATAGCC 57.192 36.000 0.00 0.00 0.00 3.93
2667 4217 8.677148 AAAACAGTTTTGCTAGAACTCATCTA 57.323 30.769 10.62 0.00 39.71 1.98
2668 4218 7.573968 AAAACAGTTTTGCTAGAACTCATCT 57.426 32.000 10.62 0.00 42.48 2.90
2669 4219 9.899226 AATAAAACAGTTTTGCTAGAACTCATC 57.101 29.630 19.77 0.00 35.26 2.92
2679 4229 9.206870 CACCATCATAAATAAAACAGTTTTGCT 57.793 29.630 19.77 5.81 34.19 3.91
2680 4230 8.442384 CCACCATCATAAATAAAACAGTTTTGC 58.558 33.333 19.77 0.00 34.19 3.68
2681 4231 9.487790 ACCACCATCATAAATAAAACAGTTTTG 57.512 29.630 19.77 4.39 34.19 2.44
2682 4232 9.487790 CACCACCATCATAAATAAAACAGTTTT 57.512 29.630 15.58 15.58 36.67 2.43
2683 4233 8.646900 ACACCACCATCATAAATAAAACAGTTT 58.353 29.630 0.00 0.00 0.00 2.66
2684 4234 8.189119 ACACCACCATCATAAATAAAACAGTT 57.811 30.769 0.00 0.00 0.00 3.16
2685 4235 7.775053 ACACCACCATCATAAATAAAACAGT 57.225 32.000 0.00 0.00 0.00 3.55
2703 4253 5.176444 CGACAACGACAATGGTACACCAC 62.176 52.174 2.50 0.00 45.25 4.16
2704 4254 3.118364 CGACAACGACAATGGTACACCA 61.118 50.000 3.02 3.02 45.99 4.17
2705 4255 1.458064 CGACAACGACAATGGTACACC 59.542 52.381 0.00 0.00 41.92 4.16
2706 4256 2.129607 ACGACAACGACAATGGTACAC 58.870 47.619 0.00 0.00 41.92 2.90
2707 4257 2.512485 ACGACAACGACAATGGTACA 57.488 45.000 0.00 0.00 43.03 2.90
2708 4258 2.796031 TCAACGACAACGACAATGGTAC 59.204 45.455 0.00 0.00 42.66 3.34
2709 4259 3.054166 CTCAACGACAACGACAATGGTA 58.946 45.455 0.00 0.00 42.66 3.25
2710 4260 1.864711 CTCAACGACAACGACAATGGT 59.135 47.619 0.00 0.00 42.66 3.55
2769 5865 9.681062 CACCTAATCTAATTTTCAGGGAACTTA 57.319 33.333 0.00 0.00 40.21 2.24
2777 5873 7.827819 TCGTGACACCTAATCTAATTTTCAG 57.172 36.000 0.00 0.00 0.00 3.02
2793 5889 0.586802 GCCAAACCTCTTCGTGACAC 59.413 55.000 0.00 0.00 0.00 3.67
2794 5890 0.534203 GGCCAAACCTCTTCGTGACA 60.534 55.000 0.00 0.00 34.51 3.58
2840 5936 8.697507 AAAACATCAAAAACTATCAGGAGAGT 57.302 30.769 0.00 0.00 33.77 3.24
2888 6026 2.735134 ACGCACGGTTTGAGAGATAAAC 59.265 45.455 0.00 0.00 37.31 2.01
2898 6036 2.961522 ACATTTAGACGCACGGTTTG 57.038 45.000 0.00 0.00 0.00 2.93
2903 6041 4.463209 ACAATTCAACATTTAGACGCACG 58.537 39.130 0.00 0.00 0.00 5.34
2908 6046 8.641499 TGGTGAAAACAATTCAACATTTAGAC 57.359 30.769 4.88 0.00 40.81 2.59
2916 6054 6.676237 AACCATTGGTGAAAACAATTCAAC 57.324 33.333 9.62 0.00 36.47 3.18
2933 6071 4.346418 AGATCTCTATGCGAGGAAACCATT 59.654 41.667 0.00 0.00 40.30 3.16
2934 6072 3.900601 AGATCTCTATGCGAGGAAACCAT 59.099 43.478 0.00 0.00 40.30 3.55
2938 6076 5.105351 TGTTCAAGATCTCTATGCGAGGAAA 60.105 40.000 0.00 0.00 40.30 3.13
2942 6080 4.930963 AGTGTTCAAGATCTCTATGCGAG 58.069 43.478 0.00 0.00 41.30 5.03
2944 6082 6.066054 TCTAGTGTTCAAGATCTCTATGCG 57.934 41.667 0.00 0.00 0.00 4.73
2961 6099 8.712363 CGAAACATAATAACATGGGATCTAGTG 58.288 37.037 0.00 0.00 0.00 2.74
2967 6105 6.285224 TCGTCGAAACATAATAACATGGGAT 58.715 36.000 0.00 0.00 0.00 3.85
2979 6117 9.514822 CGTTAAAAATAAGTTCGTCGAAACATA 57.485 29.630 9.70 3.87 0.00 2.29
3012 6150 4.635765 TCTCAGTTCTGTTTTCTTGTGTGG 59.364 41.667 0.00 0.00 0.00 4.17
3015 6153 4.333649 TGCTCTCAGTTCTGTTTTCTTGTG 59.666 41.667 0.00 0.00 0.00 3.33
3031 6169 6.374053 TCGAAATGGAATAAAACATGCTCTCA 59.626 34.615 0.00 0.00 0.00 3.27
3050 6188 0.037326 TGCTTCGTGCCTCTCGAAAT 60.037 50.000 5.46 0.00 44.58 2.17
3059 6197 1.154225 CACGGATTTGCTTCGTGCC 60.154 57.895 0.00 0.00 45.56 5.01
3267 6415 1.594331 GAGGCACGGATTTGTATCCC 58.406 55.000 0.00 0.00 46.53 3.85
3339 6491 1.378646 GCCTCTCGGAAAAAGGGGG 60.379 63.158 0.00 0.00 34.70 5.40
3366 6518 2.559440 GGATTTGCTTCTGCGAGAGAT 58.441 47.619 0.00 0.00 43.34 2.75
3367 6519 1.737029 CGGATTTGCTTCTGCGAGAGA 60.737 52.381 0.00 0.00 43.34 3.10
3375 6527 1.906574 TGGAGGTACGGATTTGCTTCT 59.093 47.619 0.00 0.00 0.00 2.85
3473 6631 5.459505 TGTTTTCCTTAGGATTTGGACCAA 58.540 37.500 1.69 1.69 0.00 3.67
3474 6632 5.068215 TGTTTTCCTTAGGATTTGGACCA 57.932 39.130 0.12 0.00 0.00 4.02
3475 6633 5.105351 CCATGTTTTCCTTAGGATTTGGACC 60.105 44.000 0.12 0.00 0.00 4.46
3476 6634 5.714806 TCCATGTTTTCCTTAGGATTTGGAC 59.285 40.000 0.12 0.00 0.00 4.02
3477 6635 5.898120 TCCATGTTTTCCTTAGGATTTGGA 58.102 37.500 0.12 7.78 0.00 3.53
3504 6662 8.876790 GGCTTTTAGATGATTTCAATTTTCTGG 58.123 33.333 0.00 0.00 0.00 3.86
3506 6664 8.522830 TCGGCTTTTAGATGATTTCAATTTTCT 58.477 29.630 0.00 0.00 0.00 2.52
3512 6670 6.208599 AGGTTTCGGCTTTTAGATGATTTCAA 59.791 34.615 0.00 0.00 0.00 2.69
3514 6687 6.030228 CAGGTTTCGGCTTTTAGATGATTTC 58.970 40.000 0.00 0.00 0.00 2.17
3553 6726 1.544246 GGACGGTCCCTTTGGATTTTG 59.456 52.381 16.55 0.00 44.28 2.44
3699 6882 0.698238 TTGTCTTGGACCCATCCTGG 59.302 55.000 0.00 0.00 46.43 4.45
3700 6883 1.340405 CCTTGTCTTGGACCCATCCTG 60.340 57.143 0.00 0.00 46.43 3.86
3705 6890 2.151369 GGACCTTGTCTTGGACCCA 58.849 57.895 0.00 0.00 34.20 4.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.