Multiple sequence alignment - TraesCS2B01G013200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G013200 chr2B 100.000 7933 0 0 1 7933 6375705 6383637 0.000000e+00 14650.0
1 TraesCS2B01G013200 chr2B 97.249 5708 108 14 1 5687 6404893 6410572 0.000000e+00 9625.0
2 TraesCS2B01G013200 chr2B 93.037 2226 123 12 5681 7888 6424860 6427071 0.000000e+00 3223.0
3 TraesCS2B01G013200 chr2B 92.759 2182 118 14 5681 7843 6410802 6412962 0.000000e+00 3118.0
4 TraesCS2B01G013200 chr2B 96.000 550 22 0 5138 5687 6424081 6424630 0.000000e+00 894.0
5 TraesCS2B01G013200 chr2B 77.422 1373 269 35 3268 4619 31060158 31061510 0.000000e+00 780.0
6 TraesCS2B01G013200 chr2B 100.000 105 0 0 8241 8345 6383945 6384049 2.380000e-45 195.0
7 TraesCS2B01G013200 chr2B 79.915 234 42 3 2279 2509 653841076 653841307 5.180000e-37 167.0
8 TraesCS2B01G013200 chr2B 86.735 98 13 0 2513 2610 34043336 34043433 8.860000e-20 110.0
9 TraesCS2B01G013200 chr2D 95.101 2776 83 17 2961 5687 4710363 4707592 0.000000e+00 4324.0
10 TraesCS2B01G013200 chr2D 96.126 2581 71 8 3133 5687 4689895 4687318 0.000000e+00 4185.0
11 TraesCS2B01G013200 chr2D 95.830 2566 74 12 3133 5671 4671768 4669209 0.000000e+00 4115.0
12 TraesCS2B01G013200 chr2D 95.378 2250 90 9 5681 7926 4687075 4684836 0.000000e+00 3567.0
13 TraesCS2B01G013200 chr2D 95.259 2236 93 8 5681 7913 4707349 4705124 0.000000e+00 3530.0
14 TraesCS2B01G013200 chr2D 94.906 1060 46 3 5681 6740 4668955 4667904 0.000000e+00 1652.0
15 TraesCS2B01G013200 chr2D 95.804 572 21 3 7356 7926 4667910 4667341 0.000000e+00 920.0
16 TraesCS2B01G013200 chr2D 84.168 979 108 29 384 1340 4691617 4690664 0.000000e+00 905.0
17 TraesCS2B01G013200 chr2D 84.168 979 108 29 384 1340 4711781 4710828 0.000000e+00 905.0
18 TraesCS2B01G013200 chr2D 84.033 977 109 28 386 1340 4673385 4672434 0.000000e+00 896.0
19 TraesCS2B01G013200 chr2D 78.703 1357 249 31 3285 4624 2695843 2694510 0.000000e+00 869.0
20 TraesCS2B01G013200 chr2D 85.806 310 39 3 7041 7349 2693369 2693064 2.910000e-84 324.0
21 TraesCS2B01G013200 chr2D 83.459 133 16 5 2386 2515 558960494 558960365 1.470000e-22 119.0
22 TraesCS2B01G013200 chr2D 85.217 115 13 2 1679 1789 650012566 650012452 1.900000e-21 115.0
23 TraesCS2B01G013200 chr2D 88.679 53 6 0 2609 2661 73822115 73822063 1.940000e-06 65.8
24 TraesCS2B01G013200 chr2D 88.679 53 6 0 2609 2661 557285167 557285115 1.940000e-06 65.8
25 TraesCS2B01G013200 chrUn 100.000 391 0 0 2308 2698 479899615 479899225 0.000000e+00 723.0
26 TraesCS2B01G013200 chrUn 96.643 417 11 1 6959 7375 477374847 477375260 0.000000e+00 689.0
27 TraesCS2B01G013200 chrUn 88.889 54 6 0 2609 2662 384619897 384619844 5.410000e-07 67.6
28 TraesCS2B01G013200 chrUn 92.105 38 3 0 402 439 277594247 277594210 4.000000e-03 54.7
29 TraesCS2B01G013200 chr7B 77.517 298 58 9 131 423 665672541 665672248 4.010000e-38 171.0
30 TraesCS2B01G013200 chr7B 83.582 67 11 0 2609 2675 719065173 719065107 6.990000e-06 63.9
31 TraesCS2B01G013200 chr6B 79.339 242 48 2 2276 2515 239359008 239358767 1.440000e-37 169.0
32 TraesCS2B01G013200 chr6B 84.000 100 11 4 2511 2610 123378660 123378566 3.210000e-14 91.6
33 TraesCS2B01G013200 chr6B 86.301 73 9 1 371 443 125345260 125345331 2.500000e-10 78.7
34 TraesCS2B01G013200 chr6D 78.750 240 46 3 2279 2515 1784239 1784476 1.120000e-33 156.0
35 TraesCS2B01G013200 chr6D 90.566 53 5 0 2609 2661 351958703 351958651 4.180000e-08 71.3
36 TraesCS2B01G013200 chr2A 86.301 146 16 3 4116 4258 1978591 1978735 1.120000e-33 156.0
37 TraesCS2B01G013200 chr2A 86.301 146 16 3 4116 4258 2016611 2016755 1.120000e-33 156.0
38 TraesCS2B01G013200 chr2A 86.301 146 16 3 4116 4258 2053589 2053733 1.120000e-33 156.0
39 TraesCS2B01G013200 chr2A 82.243 107 19 0 2821 2927 559069981 559070087 8.920000e-15 93.5
40 TraesCS2B01G013200 chr2A 80.247 81 8 3 2659 2731 592468924 592468844 4.000000e-03 54.7
41 TraesCS2B01G013200 chr7D 78.704 216 46 0 2300 2515 126988082 126988297 2.430000e-30 145.0
42 TraesCS2B01G013200 chr7D 78.307 189 40 1 2278 2465 616706636 616706824 4.090000e-23 121.0
43 TraesCS2B01G013200 chr7D 85.938 64 9 0 2547 2610 617085040 617084977 1.500000e-07 69.4
44 TraesCS2B01G013200 chr5B 88.679 106 10 2 2513 2617 474772888 474772784 2.440000e-25 128.0
45 TraesCS2B01G013200 chr5B 87.037 54 7 0 2609 2662 565531782 565531729 2.520000e-05 62.1
46 TraesCS2B01G013200 chr1B 80.247 162 32 0 2354 2515 354580558 354580397 1.140000e-23 122.0
47 TraesCS2B01G013200 chr1B 85.870 92 11 1 1691 1780 438040390 438040481 6.890000e-16 97.1
48 TraesCS2B01G013200 chr6A 83.784 111 11 4 2513 2619 588015344 588015451 1.920000e-16 99.0
49 TraesCS2B01G013200 chr6A 84.946 93 10 1 2511 2599 127187252 127187344 3.210000e-14 91.6
50 TraesCS2B01G013200 chr4D 83.654 104 17 0 2507 2610 331420054 331420157 1.920000e-16 99.0
51 TraesCS2B01G013200 chr4D 82.692 104 16 2 1688 1790 50072540 50072642 3.210000e-14 91.6
52 TraesCS2B01G013200 chr3B 84.158 101 14 1 1691 1789 8478590 8478490 6.890000e-16 97.1
53 TraesCS2B01G013200 chr3B 85.263 95 12 1 1688 1780 724750445 724750539 6.890000e-16 97.1
54 TraesCS2B01G013200 chr3B 86.364 88 11 1 1693 1779 815875418 815875331 2.480000e-15 95.3
55 TraesCS2B01G013200 chr3B 85.455 55 8 0 2608 2662 103451624 103451678 3.250000e-04 58.4
56 TraesCS2B01G013200 chr3B 92.105 38 3 0 402 439 765726782 765726745 4.000000e-03 54.7
57 TraesCS2B01G013200 chr5A 84.783 92 12 1 1691 1780 265600002 265599911 3.210000e-14 91.6
58 TraesCS2B01G013200 chr5A 100.000 35 0 0 2569 2603 522084784 522084818 1.940000e-06 65.8
59 TraesCS2B01G013200 chr5A 94.595 37 0 2 385 419 4277648 4277684 1.000000e-03 56.5
60 TraesCS2B01G013200 chr4A 84.375 96 10 4 1688 1780 680050748 680050841 1.150000e-13 89.8
61 TraesCS2B01G013200 chr3D 74.684 237 36 13 2645 2860 470722039 470721806 5.370000e-12 84.2
62 TraesCS2B01G013200 chr3D 88.889 54 6 0 2609 2662 1386026 1385973 5.410000e-07 67.6
63 TraesCS2B01G013200 chr5D 74.872 195 37 7 2321 2515 434700792 434700974 2.500000e-10 78.7
64 TraesCS2B01G013200 chr1A 94.286 35 2 0 399 433 327535922 327535956 4.000000e-03 54.7
65 TraesCS2B01G013200 chr7A 96.774 31 1 0 403 433 695373168 695373198 1.500000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G013200 chr2B 6375705 6384049 8344 False 7422.500000 14650 100.000000 1 8345 2 chr2B.!!$F4 8344
1 TraesCS2B01G013200 chr2B 6404893 6412962 8069 False 6371.500000 9625 95.004000 1 7843 2 chr2B.!!$F5 7842
2 TraesCS2B01G013200 chr2B 6424081 6427071 2990 False 2058.500000 3223 94.518500 5138 7888 2 chr2B.!!$F6 2750
3 TraesCS2B01G013200 chr2B 31060158 31061510 1352 False 780.000000 780 77.422000 3268 4619 1 chr2B.!!$F1 1351
4 TraesCS2B01G013200 chr2D 4705124 4711781 6657 True 2919.666667 4324 91.509333 384 7913 3 chr2D.!!$R8 7529
5 TraesCS2B01G013200 chr2D 4684836 4691617 6781 True 2885.666667 4185 91.890667 384 7926 3 chr2D.!!$R7 7542
6 TraesCS2B01G013200 chr2D 4667341 4673385 6044 True 1895.750000 4115 92.643250 386 7926 4 chr2D.!!$R6 7540
7 TraesCS2B01G013200 chr2D 2693064 2695843 2779 True 596.500000 869 82.254500 3285 7349 2 chr2D.!!$R5 4064

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
226 227 0.030235 GTTTGGTTGGACTCGGCAAC 59.970 55.000 0.00 0.00 0.00 4.17 F
275 276 0.035820 GGGTGTTATCGTGGAGCCAA 60.036 55.000 0.00 0.00 0.00 4.52 F
293 294 0.107848 AAGGTATCTTTGGTCGGCCG 60.108 55.000 22.12 22.12 37.67 6.13 F
296 297 0.175073 GTATCTTTGGTCGGCCGTCT 59.825 55.000 27.15 4.82 37.67 4.18 F
628 634 0.536460 ACAGGTTGTAAGGGGCAACG 60.536 55.000 0.00 0.00 45.01 4.10 F
1863 1888 1.172180 TGCCCGTTCTTCTTTGCCAG 61.172 55.000 0.00 0.00 0.00 4.85 F
2757 2784 1.135527 CGGACGGTAGATTAACAGCCA 59.864 52.381 0.00 0.00 0.00 4.75 F
2777 2804 1.630369 AGCTGTAGCATGGACTCCAAA 59.370 47.619 0.66 0.00 45.16 3.28 F
5448 6277 1.209261 TCACTCTGCACTGGAAACACA 59.791 47.619 0.00 0.00 35.60 3.72 F
6039 7132 0.380378 GCCGAACTTTGTGTTGCAGA 59.620 50.000 0.00 0.00 39.30 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1863 1888 4.342862 TGACCTCAGAGCAAATATAGCC 57.657 45.455 0.00 0.00 0.00 3.93 R
2306 2333 9.355215 GTATAACATGACAACTCCTTATATCCG 57.645 37.037 0.00 0.00 0.00 4.18 R
2698 2725 9.212641 CTCATCCAAGTCGACATGAATATAATT 57.787 33.333 21.62 0.00 0.00 1.40 R
2711 2738 2.493675 CCTTCTGTCTCATCCAAGTCGA 59.506 50.000 0.00 0.00 0.00 4.20 R
2757 2784 1.279496 TTGGAGTCCATGCTACAGCT 58.721 50.000 14.00 0.00 42.66 4.24 R
2777 2804 6.372659 CCTGCAGTACACTCTCATAATGTTTT 59.627 38.462 13.81 0.00 0.00 2.43 R
5368 6197 4.375272 GGTTCGGGGCTAGTAATTCTAAC 58.625 47.826 0.00 0.00 0.00 2.34 R
5453 6282 7.395772 TGGTGACCATGCTATATTTTTCAGAAA 59.604 33.333 0.00 0.00 0.00 2.52 R
7183 8289 0.035317 TCACTGCGATGCTCAAACCT 59.965 50.000 0.00 0.00 0.00 3.50 R
8307 9433 0.368227 GATCTTGAACAGCTGACGCG 59.632 55.000 23.35 3.53 42.32 6.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 4.569966 GTGCTCAAATCTAGTGTGGATGAG 59.430 45.833 0.00 0.00 0.00 2.90
48 49 4.335647 AGCTGACCCTGGTTGCGG 62.336 66.667 8.78 0.00 34.71 5.69
81 82 0.108615 CCTCAAGTGGTGTAGGCGAG 60.109 60.000 0.00 0.00 0.00 5.03
84 85 2.230508 CTCAAGTGGTGTAGGCGAGTTA 59.769 50.000 0.00 0.00 0.00 2.24
86 87 1.920610 AGTGGTGTAGGCGAGTTACT 58.079 50.000 0.00 0.00 0.00 2.24
148 149 1.282875 GTTGGTGTCGCTTGCTTCC 59.717 57.895 0.00 0.00 0.00 3.46
155 156 2.030805 GTGTCGCTTGCTTCCTGAAAAT 60.031 45.455 0.00 0.00 0.00 1.82
158 159 2.622942 TCGCTTGCTTCCTGAAAATGTT 59.377 40.909 0.00 0.00 0.00 2.71
174 175 2.806945 TGTTGTCATGGATCTTCCCC 57.193 50.000 0.00 0.00 35.03 4.81
176 177 2.025981 TGTTGTCATGGATCTTCCCCTG 60.026 50.000 0.00 0.00 35.03 4.45
179 180 0.548031 TCATGGATCTTCCCCTGTGC 59.452 55.000 0.00 0.00 35.03 4.57
180 181 0.466922 CATGGATCTTCCCCTGTGCC 60.467 60.000 0.00 0.00 35.03 5.01
182 183 1.139498 TGGATCTTCCCCTGTGCCAA 61.139 55.000 0.00 0.00 35.03 4.52
226 227 0.030235 GTTTGGTTGGACTCGGCAAC 59.970 55.000 0.00 0.00 0.00 4.17
238 239 3.430862 GGCAACGGCGATGCTTGA 61.431 61.111 34.90 0.00 43.34 3.02
240 241 2.096406 CAACGGCGATGCTTGACG 59.904 61.111 16.62 0.00 0.00 4.35
271 272 0.616371 TTGGGGGTGTTATCGTGGAG 59.384 55.000 0.00 0.00 0.00 3.86
272 273 1.153229 GGGGGTGTTATCGTGGAGC 60.153 63.158 0.00 0.00 0.00 4.70
273 274 1.153229 GGGGTGTTATCGTGGAGCC 60.153 63.158 0.00 0.00 0.00 4.70
274 275 1.600107 GGGTGTTATCGTGGAGCCA 59.400 57.895 0.00 0.00 0.00 4.75
275 276 0.035820 GGGTGTTATCGTGGAGCCAA 60.036 55.000 0.00 0.00 0.00 4.52
276 277 1.369625 GGTGTTATCGTGGAGCCAAG 58.630 55.000 0.00 0.00 0.00 3.61
277 278 1.369625 GTGTTATCGTGGAGCCAAGG 58.630 55.000 2.69 0.00 0.00 3.61
278 279 0.981183 TGTTATCGTGGAGCCAAGGT 59.019 50.000 2.69 0.00 0.00 3.50
279 280 2.093869 GTGTTATCGTGGAGCCAAGGTA 60.094 50.000 2.69 0.00 0.00 3.08
280 281 2.769663 TGTTATCGTGGAGCCAAGGTAT 59.230 45.455 2.69 0.00 0.00 2.73
281 282 3.181469 TGTTATCGTGGAGCCAAGGTATC 60.181 47.826 2.69 0.66 0.00 2.24
282 283 1.794714 ATCGTGGAGCCAAGGTATCT 58.205 50.000 2.69 0.00 0.00 1.98
283 284 1.568504 TCGTGGAGCCAAGGTATCTT 58.431 50.000 2.69 0.00 0.00 2.40
284 285 1.906574 TCGTGGAGCCAAGGTATCTTT 59.093 47.619 2.69 0.00 0.00 2.52
285 286 2.009774 CGTGGAGCCAAGGTATCTTTG 58.990 52.381 0.00 0.00 0.00 2.77
286 287 2.369394 GTGGAGCCAAGGTATCTTTGG 58.631 52.381 6.32 6.32 0.00 3.28
287 288 1.992557 TGGAGCCAAGGTATCTTTGGT 59.007 47.619 11.21 0.00 0.00 3.67
288 289 2.026262 TGGAGCCAAGGTATCTTTGGTC 60.026 50.000 9.88 9.88 40.36 4.02
289 290 2.280628 GAGCCAAGGTATCTTTGGTCG 58.719 52.381 3.53 0.00 34.83 4.79
290 291 1.065418 AGCCAAGGTATCTTTGGTCGG 60.065 52.381 11.21 0.00 0.00 4.79
291 292 1.379527 CCAAGGTATCTTTGGTCGGC 58.620 55.000 3.06 0.00 0.00 5.54
292 293 1.379527 CAAGGTATCTTTGGTCGGCC 58.620 55.000 0.00 0.00 0.00 6.13
293 294 0.107848 AAGGTATCTTTGGTCGGCCG 60.108 55.000 22.12 22.12 37.67 6.13
294 295 1.219935 GGTATCTTTGGTCGGCCGT 59.780 57.895 27.15 5.29 37.67 5.68
295 296 0.808847 GGTATCTTTGGTCGGCCGTC 60.809 60.000 27.15 20.62 37.67 4.79
296 297 0.175073 GTATCTTTGGTCGGCCGTCT 59.825 55.000 27.15 4.82 37.67 4.18
309 310 0.815734 GCCGTCTGCTAGGTGTTAGA 59.184 55.000 0.00 0.00 36.87 2.10
323 324 8.035984 GCTAGGTGTTAGACTTGTTCTAGATTT 58.964 37.037 0.00 0.00 38.12 2.17
364 365 2.806945 TTGTAAATGCTCCTCCCCAG 57.193 50.000 0.00 0.00 0.00 4.45
369 370 4.347000 TGTAAATGCTCCTCCCCAGTATAC 59.653 45.833 0.00 0.00 0.00 1.47
376 377 4.011023 CTCCTCCCCAGTATACTGTATCG 58.989 52.174 27.07 14.20 42.27 2.92
560 561 9.821662 TGACTGATATACGTACTGAAAATATCG 57.178 33.333 0.00 0.99 33.95 2.92
565 566 9.488124 GATATACGTACTGAAAATATCGAGACC 57.512 37.037 0.00 0.00 0.00 3.85
566 567 4.595116 ACGTACTGAAAATATCGAGACCG 58.405 43.478 0.00 0.00 37.07 4.79
578 579 9.760077 AAAATATCGAGACCGTTAGTTTATCAT 57.240 29.630 0.00 0.00 36.86 2.45
628 634 0.536460 ACAGGTTGTAAGGGGCAACG 60.536 55.000 0.00 0.00 45.01 4.10
661 667 4.345859 AGACATCTAGAGTACTCCCTCG 57.654 50.000 19.38 7.24 36.56 4.63
727 736 2.814280 ATTATCCGGTACTGCCTTCG 57.186 50.000 0.00 0.00 34.25 3.79
882 893 7.728981 GGACCCTTATATATGCTAGCTGGTATA 59.271 40.741 17.23 10.16 0.00 1.47
1737 1762 8.454106 GTGTGAATCTACACTCTAAAATGCATT 58.546 33.333 5.99 5.99 45.70 3.56
1863 1888 1.172180 TGCCCGTTCTTCTTTGCCAG 61.172 55.000 0.00 0.00 0.00 4.85
2306 2333 9.450807 GGCATGTTAATTATACAGACAACAATC 57.549 33.333 0.00 0.00 30.48 2.67
2698 2725 9.747898 ATAAGGTACATTCAGTTGGATTAAACA 57.252 29.630 0.00 0.00 32.21 2.83
2738 2765 1.472376 GGATGAGACAGAAGGGAAGCG 60.472 57.143 0.00 0.00 0.00 4.68
2757 2784 1.135527 CGGACGGTAGATTAACAGCCA 59.864 52.381 0.00 0.00 0.00 4.75
2777 2804 1.630369 AGCTGTAGCATGGACTCCAAA 59.370 47.619 0.66 0.00 45.16 3.28
2882 2909 7.686438 TTTGCTTGACTATATGTGACATGTT 57.314 32.000 8.61 0.00 0.00 2.71
2883 2910 8.785329 TTTGCTTGACTATATGTGACATGTTA 57.215 30.769 8.61 0.00 0.00 2.41
4763 5586 9.537192 CTTTATAAATCAGGTGGTACGATGTAA 57.463 33.333 0.00 0.00 0.00 2.41
5235 6064 2.223144 TGAAGGTCGCAAAGTTTGATCG 59.777 45.455 19.82 13.63 0.00 3.69
5244 6073 5.407084 TCGCAAAGTTTGATCGAGTTTATCA 59.593 36.000 19.82 0.00 0.00 2.15
5268 6097 7.713507 TCAAAACAATAGCTACGCCTATAACAT 59.286 33.333 0.00 0.00 0.00 2.71
5283 6112 9.599322 CGCCTATAACATCAAATAACTGAATTC 57.401 33.333 0.00 0.00 0.00 2.17
5304 6133 9.342308 GAATTCTATTTTGTGATGGTCCTGATA 57.658 33.333 0.00 0.00 0.00 2.15
5305 6134 9.699410 AATTCTATTTTGTGATGGTCCTGATAA 57.301 29.630 0.00 0.00 0.00 1.75
5368 6197 5.747565 TGAATGCTCTCAACGTTTACAAAG 58.252 37.500 0.00 0.00 0.00 2.77
5448 6277 1.209261 TCACTCTGCACTGGAAACACA 59.791 47.619 0.00 0.00 35.60 3.72
5451 6280 3.814842 CACTCTGCACTGGAAACACAATA 59.185 43.478 0.00 0.00 35.60 1.90
5453 6282 5.048504 CACTCTGCACTGGAAACACAATAAT 60.049 40.000 0.00 0.00 35.60 1.28
5815 6894 7.829378 ATTTTAGTGGTACGAATCTCAGTTC 57.171 36.000 0.00 0.00 0.00 3.01
5818 6897 3.827302 AGTGGTACGAATCTCAGTTCACT 59.173 43.478 0.00 0.00 32.80 3.41
5888 6981 7.999545 TCATAGAGAGTAGGTACATAGCACTTT 59.000 37.037 0.00 0.00 0.00 2.66
5993 7086 6.668541 AGTCAAAATATCATCAAGACCACG 57.331 37.500 0.00 0.00 0.00 4.94
6039 7132 0.380378 GCCGAACTTTGTGTTGCAGA 59.620 50.000 0.00 0.00 39.30 4.26
6040 7133 1.202245 GCCGAACTTTGTGTTGCAGAA 60.202 47.619 0.00 0.00 39.30 3.02
6156 7249 9.423061 GTTTCTTTTGTAGGCAATATGAACAAT 57.577 29.630 0.00 0.00 34.18 2.71
6157 7250 9.638239 TTTCTTTTGTAGGCAATATGAACAATC 57.362 29.630 0.00 0.00 34.18 2.67
6158 7251 8.579850 TCTTTTGTAGGCAATATGAACAATCT 57.420 30.769 0.00 0.00 34.18 2.40
6159 7252 8.461222 TCTTTTGTAGGCAATATGAACAATCTG 58.539 33.333 0.00 0.00 34.18 2.90
6160 7253 6.698008 TTGTAGGCAATATGAACAATCTGG 57.302 37.500 0.00 0.00 0.00 3.86
6161 7254 6.000246 TGTAGGCAATATGAACAATCTGGA 58.000 37.500 0.00 0.00 0.00 3.86
6162 7255 5.822519 TGTAGGCAATATGAACAATCTGGAC 59.177 40.000 0.00 0.00 0.00 4.02
6163 7256 4.210331 AGGCAATATGAACAATCTGGACC 58.790 43.478 0.00 0.00 0.00 4.46
6164 7257 3.953612 GGCAATATGAACAATCTGGACCA 59.046 43.478 0.00 0.00 0.00 4.02
6190 7292 3.903467 ACTTGGAATAATGGAAGAGGGC 58.097 45.455 0.00 0.00 0.00 5.19
6398 7500 1.581223 ACTAAGTACTGGGGGCTTCC 58.419 55.000 0.00 0.00 0.00 3.46
6747 7850 7.535940 CACTGAAAATTGGCATAGCAAAATTTG 59.464 33.333 0.57 0.57 36.86 2.32
6750 7853 8.627403 TGAAAATTGGCATAGCAAAATTTGAAA 58.373 25.926 10.26 0.00 36.86 2.69
6861 7964 6.068010 CCTCATAGTGGAGAGTACATTCTCT 58.932 44.000 10.88 0.00 45.97 3.10
7183 8289 1.073284 GGAAGACCACCAACCAAGCTA 59.927 52.381 0.00 0.00 35.97 3.32
7198 8304 0.250234 AGCTAGGTTTGAGCATCGCA 59.750 50.000 0.00 0.00 42.69 5.10
7212 8318 1.260538 ATCGCAGTGAGCTCTTCCCA 61.261 55.000 16.19 0.00 42.61 4.37
7521 8628 4.945543 TCATGCTGCAAACTCAGATGTATT 59.054 37.500 6.36 0.00 36.19 1.89
7835 8961 8.291888 TCGTTTGAACATCATTTGTATTTTGG 57.708 30.769 0.00 0.00 37.68 3.28
7932 9058 2.899339 GCTCCCGCAGCTCAATCC 60.899 66.667 0.00 0.00 45.83 3.01
8257 9383 4.404691 CCACCACTCCTCTTTGCC 57.595 61.111 0.00 0.00 0.00 4.52
8258 9384 1.672356 CCACCACTCCTCTTTGCCG 60.672 63.158 0.00 0.00 0.00 5.69
8259 9385 2.032681 ACCACTCCTCTTTGCCGC 59.967 61.111 0.00 0.00 0.00 6.53
8260 9386 2.747855 CCACTCCTCTTTGCCGCC 60.748 66.667 0.00 0.00 0.00 6.13
8261 9387 3.121030 CACTCCTCTTTGCCGCCG 61.121 66.667 0.00 0.00 0.00 6.46
8263 9389 4.767255 CTCCTCTTTGCCGCCGCT 62.767 66.667 0.00 0.00 35.36 5.52
8264 9390 3.371097 CTCCTCTTTGCCGCCGCTA 62.371 63.158 0.00 0.00 35.36 4.26
8265 9391 2.892425 CCTCTTTGCCGCCGCTAG 60.892 66.667 0.00 0.00 35.36 3.42
8266 9392 2.892425 CTCTTTGCCGCCGCTAGG 60.892 66.667 0.00 0.00 41.62 3.02
8267 9393 4.467084 TCTTTGCCGCCGCTAGGG 62.467 66.667 0.00 0.00 38.20 3.53
8299 9425 4.003788 CTCGGTGGTGGCGTCCTT 62.004 66.667 0.00 0.00 0.00 3.36
8300 9426 3.934391 CTCGGTGGTGGCGTCCTTC 62.934 68.421 0.00 0.00 0.00 3.46
8301 9427 4.003788 CGGTGGTGGCGTCCTTCT 62.004 66.667 0.00 0.00 0.00 2.85
8302 9428 2.430367 GGTGGTGGCGTCCTTCTT 59.570 61.111 0.00 0.00 0.00 2.52
8303 9429 1.671379 GGTGGTGGCGTCCTTCTTC 60.671 63.158 0.00 0.00 0.00 2.87
8304 9430 1.371558 GTGGTGGCGTCCTTCTTCT 59.628 57.895 0.00 0.00 0.00 2.85
8305 9431 0.670854 GTGGTGGCGTCCTTCTTCTC 60.671 60.000 0.00 0.00 0.00 2.87
8306 9432 1.446272 GGTGGCGTCCTTCTTCTCG 60.446 63.158 0.00 0.00 0.00 4.04
8307 9433 2.095252 GTGGCGTCCTTCTTCTCGC 61.095 63.158 0.00 0.00 46.42 5.03
8309 9435 3.546397 GCGTCCTTCTTCTCGCGC 61.546 66.667 0.00 0.00 39.35 6.86
8310 9436 3.241059 CGTCCTTCTTCTCGCGCG 61.241 66.667 26.76 26.76 0.00 6.86
8311 9437 2.126424 GTCCTTCTTCTCGCGCGT 60.126 61.111 30.98 0.00 0.00 6.01
8312 9438 2.153322 GTCCTTCTTCTCGCGCGTC 61.153 63.158 30.98 0.00 0.00 5.19
8313 9439 2.126463 CCTTCTTCTCGCGCGTCA 60.126 61.111 30.98 14.82 0.00 4.35
8314 9440 2.155194 CCTTCTTCTCGCGCGTCAG 61.155 63.158 30.98 20.98 0.00 3.51
8315 9441 2.783064 CTTCTTCTCGCGCGTCAGC 61.783 63.158 30.98 0.00 40.74 4.26
8316 9442 3.268965 TTCTTCTCGCGCGTCAGCT 62.269 57.895 30.98 0.00 42.32 4.24
8317 9443 3.540014 CTTCTCGCGCGTCAGCTG 61.540 66.667 30.98 7.63 42.32 4.24
8318 9444 4.342987 TTCTCGCGCGTCAGCTGT 62.343 61.111 30.98 0.00 42.32 4.40
8319 9445 3.841379 TTCTCGCGCGTCAGCTGTT 62.841 57.895 30.98 0.00 42.32 3.16
8320 9446 3.832171 CTCGCGCGTCAGCTGTTC 61.832 66.667 30.98 7.56 42.32 3.18
8321 9447 4.639171 TCGCGCGTCAGCTGTTCA 62.639 61.111 30.98 2.41 42.32 3.18
8322 9448 3.701530 CGCGCGTCAGCTGTTCAA 61.702 61.111 24.19 0.00 42.32 2.69
8323 9449 2.171940 GCGCGTCAGCTGTTCAAG 59.828 61.111 14.67 4.23 42.32 3.02
8324 9450 2.310233 GCGCGTCAGCTGTTCAAGA 61.310 57.895 14.67 0.00 42.32 3.02
8325 9451 1.630244 GCGCGTCAGCTGTTCAAGAT 61.630 55.000 14.67 0.00 42.32 2.40
8326 9452 0.368227 CGCGTCAGCTGTTCAAGATC 59.632 55.000 14.67 0.00 42.32 2.75
8327 9453 0.368227 GCGTCAGCTGTTCAAGATCG 59.632 55.000 14.67 7.98 41.01 3.69
8328 9454 0.368227 CGTCAGCTGTTCAAGATCGC 59.632 55.000 14.67 0.00 0.00 4.58
8329 9455 1.719600 GTCAGCTGTTCAAGATCGCT 58.280 50.000 14.67 0.00 0.00 4.93
8330 9456 1.392853 GTCAGCTGTTCAAGATCGCTG 59.607 52.381 14.67 9.45 46.94 5.18
8331 9457 0.096628 CAGCTGTTCAAGATCGCTGC 59.903 55.000 5.25 0.00 41.15 5.25
8332 9458 1.059994 GCTGTTCAAGATCGCTGCG 59.940 57.895 17.25 17.25 0.00 5.18
8333 9459 1.712081 CTGTTCAAGATCGCTGCGG 59.288 57.895 23.03 5.50 0.00 5.69
8334 9460 2.301902 CTGTTCAAGATCGCTGCGGC 62.302 60.000 23.03 7.70 0.00 6.53
8344 9470 4.179579 GCTGCGGCGGTTCCAATC 62.180 66.667 9.78 0.00 34.01 2.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 4.383552 GGTCAGCTCATCCACACTAGATTT 60.384 45.833 0.00 0.00 0.00 2.17
16 17 3.133721 GGTCAGCTCATCCACACTAGATT 59.866 47.826 0.00 0.00 0.00 2.40
32 33 4.643387 ACCGCAACCAGGGTCAGC 62.643 66.667 5.94 5.94 0.00 4.26
48 49 4.083862 GAGGGTCCTGGTCGCCAC 62.084 72.222 4.49 0.00 0.00 5.01
130 131 1.166531 AGGAAGCAAGCGACACCAAC 61.167 55.000 0.00 0.00 0.00 3.77
148 149 6.327934 GGAAGATCCATGACAACATTTTCAG 58.672 40.000 0.00 0.00 36.28 3.02
155 156 2.025981 CAGGGGAAGATCCATGACAACA 60.026 50.000 0.00 0.00 40.70 3.33
158 159 1.561076 CACAGGGGAAGATCCATGACA 59.439 52.381 2.47 0.00 40.70 3.58
179 180 1.228429 TTTTCACCCGGAGCCTTGG 60.228 57.895 0.73 0.00 0.00 3.61
180 181 0.537371 AGTTTTCACCCGGAGCCTTG 60.537 55.000 0.73 0.00 0.00 3.61
182 183 1.128188 AGAGTTTTCACCCGGAGCCT 61.128 55.000 0.73 0.00 0.00 4.58
206 207 0.394488 TTGCCGAGTCCAACCAAACA 60.394 50.000 0.00 0.00 0.00 2.83
226 227 2.096406 CAACGTCAAGCATCGCCG 59.904 61.111 0.00 0.00 0.00 6.46
229 230 1.399727 GGGAAACAACGTCAAGCATCG 60.400 52.381 0.00 0.00 0.00 3.84
257 258 1.369625 CTTGGCTCCACGATAACACC 58.630 55.000 0.00 0.00 0.00 4.16
271 272 1.379527 CCGACCAAAGATACCTTGGC 58.620 55.000 1.51 0.00 31.91 4.52
272 273 1.379527 GCCGACCAAAGATACCTTGG 58.620 55.000 0.04 0.04 31.91 3.61
273 274 1.379527 GGCCGACCAAAGATACCTTG 58.620 55.000 0.00 0.00 35.26 3.61
274 275 0.107848 CGGCCGACCAAAGATACCTT 60.108 55.000 24.07 0.00 34.57 3.50
275 276 1.262640 ACGGCCGACCAAAGATACCT 61.263 55.000 35.90 0.00 34.57 3.08
276 277 0.808847 GACGGCCGACCAAAGATACC 60.809 60.000 35.90 1.64 34.57 2.73
277 278 0.175073 AGACGGCCGACCAAAGATAC 59.825 55.000 35.90 9.04 34.57 2.24
278 279 0.174845 CAGACGGCCGACCAAAGATA 59.825 55.000 35.90 0.00 34.57 1.98
279 280 1.079127 CAGACGGCCGACCAAAGAT 60.079 57.895 35.90 6.14 34.57 2.40
280 281 2.342279 CAGACGGCCGACCAAAGA 59.658 61.111 35.90 0.00 34.57 2.52
281 282 2.501223 TAGCAGACGGCCGACCAAAG 62.501 60.000 35.90 16.68 46.50 2.77
282 283 2.501223 CTAGCAGACGGCCGACCAAA 62.501 60.000 35.90 11.38 46.50 3.28
283 284 2.992689 TAGCAGACGGCCGACCAA 60.993 61.111 35.90 8.50 46.50 3.67
284 285 3.449227 CTAGCAGACGGCCGACCA 61.449 66.667 35.90 10.34 46.50 4.02
285 286 4.208686 CCTAGCAGACGGCCGACC 62.209 72.222 35.90 22.69 46.50 4.79
286 287 3.450115 ACCTAGCAGACGGCCGAC 61.450 66.667 35.90 27.70 46.50 4.79
287 288 3.449227 CACCTAGCAGACGGCCGA 61.449 66.667 35.90 7.04 46.50 5.54
288 289 1.940883 TAACACCTAGCAGACGGCCG 61.941 60.000 26.86 26.86 46.50 6.13
289 290 0.179108 CTAACACCTAGCAGACGGCC 60.179 60.000 0.00 0.00 46.50 6.13
290 291 0.815734 TCTAACACCTAGCAGACGGC 59.184 55.000 0.00 0.00 45.30 5.68
291 292 2.093106 AGTCTAACACCTAGCAGACGG 58.907 52.381 0.00 0.00 41.80 4.79
292 293 3.057456 ACAAGTCTAACACCTAGCAGACG 60.057 47.826 0.00 0.00 41.80 4.18
293 294 4.522722 ACAAGTCTAACACCTAGCAGAC 57.477 45.455 0.00 0.00 38.13 3.51
294 295 4.833380 AGAACAAGTCTAACACCTAGCAGA 59.167 41.667 0.00 0.00 33.56 4.26
295 296 5.140747 AGAACAAGTCTAACACCTAGCAG 57.859 43.478 0.00 0.00 33.56 4.24
296 297 6.008331 TCTAGAACAAGTCTAACACCTAGCA 58.992 40.000 0.00 0.00 38.41 3.49
364 365 2.478134 ACGACCGAGCGATACAGTATAC 59.522 50.000 3.95 0.00 34.83 1.47
369 370 0.654160 TACACGACCGAGCGATACAG 59.346 55.000 3.95 0.00 34.83 2.74
376 377 1.494824 AACAAAGTACACGACCGAGC 58.505 50.000 0.00 0.00 0.00 5.03
438 439 2.031495 AGCAGTGGTTACCCTCTCTT 57.969 50.000 0.00 0.00 32.21 2.85
525 526 7.119846 CAGTACGTATATCAGTCATGAGATCCA 59.880 40.741 0.00 0.00 38.34 3.41
560 561 5.819059 AGTCGATGATAAACTAACGGTCTC 58.181 41.667 0.00 0.00 0.00 3.36
561 562 5.831702 AGTCGATGATAAACTAACGGTCT 57.168 39.130 0.00 0.00 0.00 3.85
565 566 7.736031 TGAGAAAGTCGATGATAAACTAACG 57.264 36.000 0.00 0.00 0.00 3.18
578 579 9.068008 GTTATTGTTTTGTTTTGAGAAAGTCGA 57.932 29.630 0.00 0.00 0.00 4.20
628 634 9.036671 GTACTCTAGATGTCTAATTTTGCCTTC 57.963 37.037 0.00 0.00 0.00 3.46
700 709 5.837438 AGGCAGTACCGGATAATTACTACTT 59.163 40.000 9.46 0.00 46.52 2.24
838 849 7.272144 AGGGTCCTACAATATTTTGTCTTCT 57.728 36.000 4.71 0.00 42.43 2.85
1780 1805 5.007039 CACTTCGCTGCTCACATACATTTAT 59.993 40.000 0.00 0.00 0.00 1.40
1863 1888 4.342862 TGACCTCAGAGCAAATATAGCC 57.657 45.455 0.00 0.00 0.00 3.93
2306 2333 9.355215 GTATAACATGACAACTCCTTATATCCG 57.645 37.037 0.00 0.00 0.00 4.18
2698 2725 9.212641 CTCATCCAAGTCGACATGAATATAATT 57.787 33.333 21.62 0.00 0.00 1.40
2711 2738 2.493675 CCTTCTGTCTCATCCAAGTCGA 59.506 50.000 0.00 0.00 0.00 4.20
2715 2742 3.871485 CTTCCCTTCTGTCTCATCCAAG 58.129 50.000 0.00 0.00 0.00 3.61
2738 2765 2.822764 CTGGCTGTTAATCTACCGTCC 58.177 52.381 0.00 0.00 0.00 4.79
2757 2784 1.279496 TTGGAGTCCATGCTACAGCT 58.721 50.000 14.00 0.00 42.66 4.24
2777 2804 6.372659 CCTGCAGTACACTCTCATAATGTTTT 59.627 38.462 13.81 0.00 0.00 2.43
2855 2882 9.394767 ACATGTCACATATAGTCAAGCAAATAA 57.605 29.630 0.00 0.00 0.00 1.40
2883 2910 9.895138 ATAGTAAACAACCGGTTATATGAAGTT 57.105 29.630 21.79 14.95 39.29 2.66
5368 6197 4.375272 GGTTCGGGGCTAGTAATTCTAAC 58.625 47.826 0.00 0.00 0.00 2.34
5451 6280 9.807649 GTGACCATGCTATATTTTTCAGAAATT 57.192 29.630 0.00 0.00 0.00 1.82
5453 6282 7.395772 TGGTGACCATGCTATATTTTTCAGAAA 59.604 33.333 0.00 0.00 0.00 2.52
5624 6453 5.488262 AGCTGGCAGTTTATTCCATTTTT 57.512 34.783 17.16 0.00 0.00 1.94
5993 7086 5.368256 TCTTCTCCGCGATATAAGTAACC 57.632 43.478 8.23 0.00 0.00 2.85
6115 7208 6.772716 ACAAAAGAAACTGCTCTTCCTTCATA 59.227 34.615 0.00 0.00 34.49 2.15
6156 7249 4.927267 ATTCCAAGTTGTATGGTCCAGA 57.073 40.909 1.45 0.00 39.09 3.86
6157 7250 6.039717 CCATTATTCCAAGTTGTATGGTCCAG 59.960 42.308 1.45 0.00 39.09 3.86
6158 7251 5.890985 CCATTATTCCAAGTTGTATGGTCCA 59.109 40.000 1.45 0.00 39.09 4.02
6159 7252 6.126409 TCCATTATTCCAAGTTGTATGGTCC 58.874 40.000 1.45 0.00 39.09 4.46
6160 7253 7.556275 TCTTCCATTATTCCAAGTTGTATGGTC 59.444 37.037 1.45 0.00 39.09 4.02
6161 7254 7.410174 TCTTCCATTATTCCAAGTTGTATGGT 58.590 34.615 1.45 0.00 39.09 3.55
6162 7255 7.013655 CCTCTTCCATTATTCCAAGTTGTATGG 59.986 40.741 1.45 6.92 39.41 2.74
6163 7256 7.013655 CCCTCTTCCATTATTCCAAGTTGTATG 59.986 40.741 1.45 0.00 0.00 2.39
6164 7257 7.062957 CCCTCTTCCATTATTCCAAGTTGTAT 58.937 38.462 1.45 0.00 0.00 2.29
6398 7500 3.674138 GCAGTGCATTGTGACAATAAGGG 60.674 47.826 10.89 0.00 0.00 3.95
6644 7747 3.611025 TCACTTCCCCATTGGTCTTTT 57.389 42.857 1.20 0.00 34.77 2.27
6861 7964 6.064717 TGTATGCTGCTAGATCTACTTCAGA 58.935 40.000 18.77 9.40 37.79 3.27
7183 8289 0.035317 TCACTGCGATGCTCAAACCT 59.965 50.000 0.00 0.00 0.00 3.50
7198 8304 0.472734 ACCACTGGGAAGAGCTCACT 60.473 55.000 17.77 1.58 38.05 3.41
7212 8318 1.822186 GACAACCCGTTGCACCACT 60.822 57.895 7.48 0.00 44.03 4.00
7547 8661 6.596309 TCACAGCTTCATTCTCTTCTTCTA 57.404 37.500 0.00 0.00 0.00 2.10
7596 8713 9.632638 ACACTCTATATTTTATGCCAAATGTCT 57.367 29.630 0.00 0.00 0.00 3.41
7752 8874 3.181473 CGAAGATATTGACACGGGGGTTA 60.181 47.826 0.00 0.00 0.00 2.85
7758 8880 3.448686 AGCTTCGAAGATATTGACACGG 58.551 45.455 28.95 0.00 35.04 4.94
7835 8961 5.899299 AGGAAGCACAAGCATTTTATCATC 58.101 37.500 0.00 0.00 45.49 2.92
7843 8969 3.710209 ACTCTAGGAAGCACAAGCATT 57.290 42.857 0.00 0.00 45.49 3.56
7847 8973 4.436242 TCGTTACTCTAGGAAGCACAAG 57.564 45.455 0.00 0.00 0.00 3.16
7889 9015 9.537848 CGTTCAGGTAATTCAAATACAAAGTAC 57.462 33.333 0.00 0.00 0.00 2.73
8240 9366 1.672356 CGGCAAAGAGGAGTGGTGG 60.672 63.158 0.00 0.00 0.00 4.61
8241 9367 2.328099 GCGGCAAAGAGGAGTGGTG 61.328 63.158 0.00 0.00 0.00 4.17
8242 9368 2.032681 GCGGCAAAGAGGAGTGGT 59.967 61.111 0.00 0.00 0.00 4.16
8243 9369 2.747855 GGCGGCAAAGAGGAGTGG 60.748 66.667 3.07 0.00 0.00 4.00
8244 9370 3.121030 CGGCGGCAAAGAGGAGTG 61.121 66.667 10.53 0.00 0.00 3.51
8246 9372 3.371097 TAGCGGCGGCAAAGAGGAG 62.371 63.158 19.21 0.00 43.41 3.69
8247 9373 3.371097 CTAGCGGCGGCAAAGAGGA 62.371 63.158 19.21 0.00 43.41 3.71
8248 9374 2.892425 CTAGCGGCGGCAAAGAGG 60.892 66.667 19.21 0.00 43.41 3.69
8249 9375 2.892425 CCTAGCGGCGGCAAAGAG 60.892 66.667 19.21 9.35 43.41 2.85
8250 9376 4.467084 CCCTAGCGGCGGCAAAGA 62.467 66.667 19.21 0.00 43.41 2.52
8282 9408 3.934391 GAAGGACGCCACCACCGAG 62.934 68.421 0.00 0.00 0.00 4.63
8283 9409 3.998672 GAAGGACGCCACCACCGA 61.999 66.667 0.00 0.00 0.00 4.69
8284 9410 3.530910 AAGAAGGACGCCACCACCG 62.531 63.158 0.00 0.00 0.00 4.94
8285 9411 1.671379 GAAGAAGGACGCCACCACC 60.671 63.158 0.00 0.00 0.00 4.61
8286 9412 0.670854 GAGAAGAAGGACGCCACCAC 60.671 60.000 0.00 0.00 0.00 4.16
8287 9413 1.671742 GAGAAGAAGGACGCCACCA 59.328 57.895 0.00 0.00 0.00 4.17
8288 9414 1.446272 CGAGAAGAAGGACGCCACC 60.446 63.158 0.00 0.00 0.00 4.61
8289 9415 2.095252 GCGAGAAGAAGGACGCCAC 61.095 63.158 0.00 0.00 44.27 5.01
8290 9416 2.261671 GCGAGAAGAAGGACGCCA 59.738 61.111 0.00 0.00 44.27 5.69
8291 9417 2.881352 CGCGAGAAGAAGGACGCC 60.881 66.667 0.00 0.00 46.69 5.68
8292 9418 3.546397 GCGCGAGAAGAAGGACGC 61.546 66.667 12.10 0.00 46.08 5.19
8293 9419 3.241059 CGCGCGAGAAGAAGGACG 61.241 66.667 28.94 0.00 0.00 4.79
8294 9420 2.126424 ACGCGCGAGAAGAAGGAC 60.126 61.111 39.36 0.00 0.00 3.85
8295 9421 2.178521 GACGCGCGAGAAGAAGGA 59.821 61.111 39.36 0.00 0.00 3.36
8296 9422 2.126463 TGACGCGCGAGAAGAAGG 60.126 61.111 39.36 3.76 0.00 3.46
8297 9423 2.783064 GCTGACGCGCGAGAAGAAG 61.783 63.158 39.36 22.33 0.00 2.85
8298 9424 2.805353 GCTGACGCGCGAGAAGAA 60.805 61.111 39.36 13.31 0.00 2.52
8299 9425 3.738246 AGCTGACGCGCGAGAAGA 61.738 61.111 39.36 13.51 42.32 2.87
8300 9426 3.540014 CAGCTGACGCGCGAGAAG 61.540 66.667 39.36 28.22 42.32 2.85
8301 9427 3.841379 AACAGCTGACGCGCGAGAA 62.841 57.895 39.36 19.71 42.32 2.87
8302 9428 4.342987 AACAGCTGACGCGCGAGA 62.343 61.111 39.36 20.83 42.32 4.04
8303 9429 3.832171 GAACAGCTGACGCGCGAG 61.832 66.667 39.36 25.53 42.32 5.03
8304 9430 4.639171 TGAACAGCTGACGCGCGA 62.639 61.111 39.36 14.99 42.32 5.87
8305 9431 3.620187 CTTGAACAGCTGACGCGCG 62.620 63.158 30.96 30.96 42.32 6.86
8306 9432 1.630244 ATCTTGAACAGCTGACGCGC 61.630 55.000 23.35 0.00 42.32 6.86
8307 9433 0.368227 GATCTTGAACAGCTGACGCG 59.632 55.000 23.35 3.53 42.32 6.01
8308 9434 0.368227 CGATCTTGAACAGCTGACGC 59.632 55.000 23.35 9.45 0.00 5.19
8309 9435 0.368227 GCGATCTTGAACAGCTGACG 59.632 55.000 23.35 12.53 0.00 4.35
8310 9436 1.719600 AGCGATCTTGAACAGCTGAC 58.280 50.000 23.35 14.31 36.73 3.51
8313 9439 1.357258 CGCAGCGATCTTGAACAGCT 61.357 55.000 9.98 0.00 38.90 4.24
8314 9440 1.059994 CGCAGCGATCTTGAACAGC 59.940 57.895 9.98 0.00 0.00 4.40
8315 9441 1.712081 CCGCAGCGATCTTGAACAG 59.288 57.895 18.75 0.00 0.00 3.16
8316 9442 2.390599 GCCGCAGCGATCTTGAACA 61.391 57.895 18.75 0.00 0.00 3.18
8317 9443 2.401195 GCCGCAGCGATCTTGAAC 59.599 61.111 18.75 0.00 0.00 3.18
8327 9453 4.179579 GATTGGAACCGCCGCAGC 62.180 66.667 0.00 0.00 40.66 5.25


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.