Multiple sequence alignment - TraesCS2B01G012700
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2B01G012700 | chr2B | 100.000 | 5581 | 0 | 0 | 1 | 5581 | 6299747 | 6294167 | 0.000000e+00 | 10307.0 |
1 | TraesCS2B01G012700 | chr2B | 89.379 | 1111 | 86 | 7 | 3013 | 4097 | 62210979 | 62212083 | 0.000000e+00 | 1369.0 |
2 | TraesCS2B01G012700 | chr2B | 91.778 | 973 | 66 | 9 | 6 | 971 | 62208920 | 62209885 | 0.000000e+00 | 1341.0 |
3 | TraesCS2B01G012700 | chr2B | 90.098 | 919 | 73 | 13 | 4092 | 5005 | 62213829 | 62214734 | 0.000000e+00 | 1177.0 |
4 | TraesCS2B01G012700 | chr2B | 90.732 | 410 | 33 | 4 | 1194 | 1602 | 62210183 | 62210588 | 4.920000e-150 | 542.0 |
5 | TraesCS2B01G012700 | chr2B | 94.372 | 231 | 12 | 1 | 1603 | 1832 | 62210655 | 62210885 | 2.470000e-93 | 353.0 |
6 | TraesCS2B01G012700 | chr2B | 92.825 | 223 | 15 | 1 | 972 | 1194 | 62209921 | 62210142 | 6.970000e-84 | 322.0 |
7 | TraesCS2B01G012700 | chr2D | 92.865 | 1808 | 87 | 15 | 2049 | 3839 | 5182538 | 5180756 | 0.000000e+00 | 2586.0 |
8 | TraesCS2B01G012700 | chr2D | 92.166 | 1085 | 69 | 5 | 3941 | 5011 | 5180490 | 5179408 | 0.000000e+00 | 1519.0 |
9 | TraesCS2B01G012700 | chr2D | 89.463 | 968 | 79 | 9 | 6 | 971 | 5184960 | 5184014 | 0.000000e+00 | 1201.0 |
10 | TraesCS2B01G012700 | chr2D | 93.165 | 790 | 26 | 16 | 1194 | 1958 | 5183724 | 5182938 | 0.000000e+00 | 1134.0 |
11 | TraesCS2B01G012700 | chr2D | 94.619 | 223 | 10 | 2 | 972 | 1194 | 5183984 | 5183764 | 1.490000e-90 | 344.0 |
12 | TraesCS2B01G012700 | chr2A | 90.347 | 1989 | 148 | 15 | 3049 | 5006 | 3714770 | 3716745 | 0.000000e+00 | 2569.0 |
13 | TraesCS2B01G012700 | chr2A | 92.238 | 1430 | 76 | 13 | 2425 | 3836 | 3619365 | 3620777 | 0.000000e+00 | 1993.0 |
14 | TraesCS2B01G012700 | chr2A | 90.049 | 1427 | 114 | 20 | 1603 | 3017 | 3713368 | 3714778 | 0.000000e+00 | 1823.0 |
15 | TraesCS2B01G012700 | chr2A | 91.653 | 1186 | 69 | 10 | 3848 | 5009 | 3620983 | 3622162 | 0.000000e+00 | 1615.0 |
16 | TraesCS2B01G012700 | chr2A | 89.825 | 1199 | 97 | 20 | 6 | 1194 | 3711692 | 3712875 | 0.000000e+00 | 1515.0 |
17 | TraesCS2B01G012700 | chr2A | 92.219 | 784 | 33 | 15 | 1194 | 1953 | 3609370 | 3610149 | 0.000000e+00 | 1085.0 |
18 | TraesCS2B01G012700 | chr2A | 89.216 | 714 | 57 | 7 | 260 | 971 | 3608385 | 3609080 | 0.000000e+00 | 874.0 |
19 | TraesCS2B01G012700 | chr2A | 94.134 | 358 | 19 | 2 | 2076 | 2433 | 3610374 | 3610729 | 1.370000e-150 | 544.0 |
20 | TraesCS2B01G012700 | chr2A | 89.024 | 410 | 22 | 4 | 1194 | 1602 | 3712914 | 3713301 | 2.340000e-133 | 486.0 |
21 | TraesCS2B01G012700 | chr2A | 93.274 | 223 | 13 | 2 | 972 | 1194 | 3609110 | 3609330 | 1.500000e-85 | 327.0 |
22 | TraesCS2B01G012700 | chr2A | 89.447 | 199 | 19 | 2 | 6 | 203 | 3608182 | 3608379 | 3.340000e-62 | 250.0 |
23 | TraesCS2B01G012700 | chr2A | 90.164 | 122 | 12 | 0 | 5460 | 5581 | 3624947 | 3625068 | 5.790000e-35 | 159.0 |
24 | TraesCS2B01G012700 | chr2A | 90.526 | 95 | 8 | 1 | 5460 | 5553 | 3597936 | 3598030 | 2.110000e-24 | 124.0 |
25 | TraesCS2B01G012700 | chr2A | 89.474 | 95 | 9 | 1 | 5460 | 5553 | 3596431 | 3596525 | 9.820000e-23 | 119.0 |
26 | TraesCS2B01G012700 | chr2A | 89.474 | 95 | 9 | 1 | 5460 | 5553 | 8183639 | 8183733 | 9.820000e-23 | 119.0 |
27 | TraesCS2B01G012700 | chr5D | 96.875 | 32 | 1 | 0 | 5094 | 5125 | 270159090 | 270159121 | 3.000000e-03 | 54.7 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2B01G012700 | chr2B | 6294167 | 6299747 | 5580 | True | 10307.000000 | 10307 | 100.000000 | 1 | 5581 | 1 | chr2B.!!$R1 | 5580 |
1 | TraesCS2B01G012700 | chr2B | 62208920 | 62214734 | 5814 | False | 850.666667 | 1369 | 91.530667 | 6 | 5005 | 6 | chr2B.!!$F1 | 4999 |
2 | TraesCS2B01G012700 | chr2D | 5179408 | 5184960 | 5552 | True | 1356.800000 | 2586 | 92.455600 | 6 | 5011 | 5 | chr2D.!!$R1 | 5005 |
3 | TraesCS2B01G012700 | chr2A | 3711692 | 3716745 | 5053 | False | 1598.250000 | 2569 | 89.811250 | 6 | 5006 | 4 | chr2A.!!$F5 | 5000 |
4 | TraesCS2B01G012700 | chr2A | 3619365 | 3625068 | 5703 | False | 1255.666667 | 1993 | 91.351667 | 2425 | 5581 | 3 | chr2A.!!$F4 | 3156 |
5 | TraesCS2B01G012700 | chr2A | 3608182 | 3610729 | 2547 | False | 616.000000 | 1085 | 91.658000 | 6 | 2433 | 5 | chr2A.!!$F3 | 2427 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
536 | 558 | 4.039703 | CGTACTGTCTTTCTTGTCGTTGA | 58.960 | 43.478 | 0.00 | 0.0 | 0.00 | 3.18 | F |
2015 | 2230 | 0.606944 | TAAATGCTTTCCCCGTGCGT | 60.607 | 50.000 | 0.00 | 0.0 | 0.00 | 5.24 | F |
2148 | 2672 | 1.471327 | CCAAATATGCCCAACCGCAAG | 60.471 | 52.381 | 0.00 | 0.0 | 43.24 | 4.01 | F |
3238 | 3771 | 1.067974 | TGTTAGGGATACGCGTCCATG | 59.932 | 52.381 | 18.63 | 0.0 | 40.17 | 3.66 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2125 | 2649 | 0.459489 | CGGTTGGGCATATTTGGTGG | 59.541 | 55.0 | 0.0 | 0.00 | 0.00 | 4.61 | R |
2950 | 3479 | 0.100325 | TGCTCAATTTATTGCCGGCG | 59.900 | 50.0 | 23.9 | 4.41 | 37.68 | 6.46 | R |
3463 | 3996 | 0.544357 | ATCTCTGGTGAACCACGGGA | 60.544 | 55.0 | 0.0 | 1.32 | 42.01 | 5.14 | R |
5089 | 7609 | 0.190069 | ACGGAGGGAGTATATGGGCA | 59.810 | 55.0 | 0.0 | 0.00 | 0.00 | 5.36 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
463 | 465 | 9.434559 | GATCAGAACAACAAAACACTAAAGTAC | 57.565 | 33.333 | 0.00 | 0.00 | 0.00 | 2.73 |
532 | 554 | 4.501559 | TGAAACGTACTGTCTTTCTTGTCG | 59.498 | 41.667 | 0.00 | 0.00 | 0.00 | 4.35 |
536 | 558 | 4.039703 | CGTACTGTCTTTCTTGTCGTTGA | 58.960 | 43.478 | 0.00 | 0.00 | 0.00 | 3.18 |
583 | 605 | 8.990163 | TTCACTTTTGGAAAACTAGGAATACT | 57.010 | 30.769 | 0.00 | 0.00 | 0.00 | 2.12 |
709 | 732 | 5.576774 | CACCACTCTGAAAACAAAAGAAACC | 59.423 | 40.000 | 0.00 | 0.00 | 0.00 | 3.27 |
752 | 775 | 8.630054 | AATTTGTAGTAGTAATTGGAAGTGCA | 57.370 | 30.769 | 0.00 | 0.00 | 0.00 | 4.57 |
815 | 839 | 5.822519 | AGTCATGCGAGGCTTAAAATATTCA | 59.177 | 36.000 | 0.00 | 0.00 | 0.00 | 2.57 |
932 | 956 | 7.704899 | GGCCTTAATTGTTTTGATACATACACC | 59.295 | 37.037 | 0.00 | 0.00 | 0.00 | 4.16 |
1183 | 1243 | 6.054295 | ACATGCCACAATGTTATTGTTGTTT | 58.946 | 32.000 | 4.55 | 0.00 | 37.50 | 2.83 |
1319 | 1420 | 4.075682 | TGGCGATTGAGAACCACAAAATA | 58.924 | 39.130 | 0.00 | 0.00 | 0.00 | 1.40 |
1337 | 1438 | 1.642037 | TACGCGAGGAGTTGAGGACG | 61.642 | 60.000 | 15.93 | 0.00 | 0.00 | 4.79 |
1375 | 1476 | 5.981088 | TGCTTGAAGATTGAAAATGCCTA | 57.019 | 34.783 | 0.00 | 0.00 | 0.00 | 3.93 |
1562 | 1664 | 4.034742 | CCAATGGCTAAATTCTTGCATTGC | 59.965 | 41.667 | 0.46 | 0.46 | 31.04 | 3.56 |
1590 | 1692 | 7.835634 | AACACGAAAACATTACAAAAATGGT | 57.164 | 28.000 | 0.00 | 0.00 | 32.14 | 3.55 |
1698 | 1911 | 7.712639 | AGCATGTAGATGGTTTATGAAGTAGTG | 59.287 | 37.037 | 0.00 | 0.00 | 36.94 | 2.74 |
1844 | 2058 | 6.420638 | TGGCTAGGAGTAAAATTTAAGGTCC | 58.579 | 40.000 | 0.00 | 0.00 | 0.00 | 4.46 |
1897 | 2111 | 7.827236 | ACATGGATCAGTAGTATTTCCGAAAAA | 59.173 | 33.333 | 0.00 | 0.00 | 0.00 | 1.94 |
1898 | 2112 | 8.840321 | CATGGATCAGTAGTATTTCCGAAAAAT | 58.160 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
1900 | 2114 | 9.542462 | TGGATCAGTAGTATTTCCGAAAAATAG | 57.458 | 33.333 | 0.00 | 0.00 | 0.00 | 1.73 |
1901 | 2115 | 8.496751 | GGATCAGTAGTATTTCCGAAAAATAGC | 58.503 | 37.037 | 0.00 | 0.00 | 0.00 | 2.97 |
1902 | 2116 | 8.958119 | ATCAGTAGTATTTCCGAAAAATAGCA | 57.042 | 30.769 | 0.00 | 0.00 | 0.00 | 3.49 |
1903 | 2117 | 8.780846 | TCAGTAGTATTTCCGAAAAATAGCAA | 57.219 | 30.769 | 0.00 | 0.00 | 0.00 | 3.91 |
1945 | 2160 | 5.566469 | ACTAAAAGCAGCACCCTGTATAAA | 58.434 | 37.500 | 0.00 | 0.00 | 41.26 | 1.40 |
1946 | 2161 | 6.187682 | ACTAAAAGCAGCACCCTGTATAAAT | 58.812 | 36.000 | 0.00 | 0.00 | 41.26 | 1.40 |
2010 | 2225 | 5.766150 | TCATACAATAAATGCTTTCCCCG | 57.234 | 39.130 | 0.00 | 0.00 | 0.00 | 5.73 |
2011 | 2226 | 5.197451 | TCATACAATAAATGCTTTCCCCGT | 58.803 | 37.500 | 0.00 | 0.00 | 0.00 | 5.28 |
2012 | 2227 | 3.866883 | ACAATAAATGCTTTCCCCGTG | 57.133 | 42.857 | 0.00 | 0.00 | 0.00 | 4.94 |
2013 | 2228 | 2.094234 | ACAATAAATGCTTTCCCCGTGC | 60.094 | 45.455 | 0.00 | 0.00 | 0.00 | 5.34 |
2014 | 2229 | 0.738389 | ATAAATGCTTTCCCCGTGCG | 59.262 | 50.000 | 0.00 | 0.00 | 0.00 | 5.34 |
2015 | 2230 | 0.606944 | TAAATGCTTTCCCCGTGCGT | 60.607 | 50.000 | 0.00 | 0.00 | 0.00 | 5.24 |
2092 | 2616 | 5.028549 | ACTATGCCACTTCTGACTATTGG | 57.971 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
2143 | 2667 | 1.859302 | TCCACCAAATATGCCCAACC | 58.141 | 50.000 | 0.00 | 0.00 | 0.00 | 3.77 |
2148 | 2672 | 1.471327 | CCAAATATGCCCAACCGCAAG | 60.471 | 52.381 | 0.00 | 0.00 | 43.24 | 4.01 |
2255 | 2779 | 5.420725 | TTGCTTATGTGTGTGGAGACTAT | 57.579 | 39.130 | 0.00 | 0.00 | 0.00 | 2.12 |
2515 | 3041 | 6.507023 | AGCTTGAGAACACAATGTTTTTAGG | 58.493 | 36.000 | 0.00 | 0.00 | 41.28 | 2.69 |
2517 | 3043 | 7.014615 | AGCTTGAGAACACAATGTTTTTAGGAT | 59.985 | 33.333 | 0.00 | 0.00 | 41.28 | 3.24 |
2644 | 3170 | 7.930325 | TGAAAACATGTAATCCAATCAAGCAAA | 59.070 | 29.630 | 0.00 | 0.00 | 0.00 | 3.68 |
2646 | 3172 | 5.969423 | ACATGTAATCCAATCAAGCAAAGG | 58.031 | 37.500 | 0.00 | 0.00 | 0.00 | 3.11 |
2649 | 3175 | 5.324409 | TGTAATCCAATCAAGCAAAGGAGT | 58.676 | 37.500 | 0.00 | 0.00 | 0.00 | 3.85 |
2732 | 3260 | 8.836268 | TTAACTCACTATATTTGAAACACGGT | 57.164 | 30.769 | 0.00 | 0.00 | 0.00 | 4.83 |
3049 | 3580 | 7.077095 | TGGATATACCTTGTTAGGGATGTGTA | 58.923 | 38.462 | 0.00 | 0.00 | 45.30 | 2.90 |
3166 | 3699 | 3.182967 | GTTGAGTCATCGACAAGCTAGG | 58.817 | 50.000 | 0.00 | 0.00 | 39.36 | 3.02 |
3220 | 3753 | 6.299141 | AGACAGGATAAATTTGACACACTGT | 58.701 | 36.000 | 0.00 | 6.70 | 39.14 | 3.55 |
3229 | 3762 | 7.448748 | AAATTTGACACACTGTTAGGGATAC | 57.551 | 36.000 | 0.00 | 0.00 | 0.00 | 2.24 |
3232 | 3765 | 1.135199 | ACACACTGTTAGGGATACGCG | 60.135 | 52.381 | 3.53 | 3.53 | 37.60 | 6.01 |
3238 | 3771 | 1.067974 | TGTTAGGGATACGCGTCCATG | 59.932 | 52.381 | 18.63 | 0.00 | 40.17 | 3.66 |
3260 | 3793 | 8.173775 | CCATGAATTCTCATCGTCTATTAATGC | 58.826 | 37.037 | 7.05 | 0.00 | 40.49 | 3.56 |
3275 | 3808 | 9.056005 | GTCTATTAATGCCATTCAGTCATTGTA | 57.944 | 33.333 | 0.00 | 0.00 | 33.13 | 2.41 |
3279 | 3812 | 8.523915 | TTAATGCCATTCAGTCATTGTAATCT | 57.476 | 30.769 | 0.00 | 0.00 | 33.13 | 2.40 |
3317 | 3850 | 5.412904 | AGGAAAAGTGAAATCCTAGCTTTCG | 59.587 | 40.000 | 0.00 | 0.00 | 41.74 | 3.46 |
3346 | 3879 | 8.675096 | AGAACTAGCTTCTTACTATCCTATCCT | 58.325 | 37.037 | 0.00 | 0.00 | 35.49 | 3.24 |
3359 | 3892 | 5.779241 | ATCCTATCCTGTGGAGTTTTTCA | 57.221 | 39.130 | 0.00 | 0.00 | 34.05 | 2.69 |
3362 | 3895 | 1.981256 | TCCTGTGGAGTTTTTCAGGC | 58.019 | 50.000 | 5.33 | 0.00 | 44.76 | 4.85 |
3448 | 3981 | 8.274322 | AGAGAATCAATATGTGGTTGAATGGTA | 58.726 | 33.333 | 0.00 | 0.00 | 38.89 | 3.25 |
3463 | 3996 | 0.178987 | TGGTAATGCGGGTGGTTGTT | 60.179 | 50.000 | 0.00 | 0.00 | 0.00 | 2.83 |
3533 | 4066 | 9.163899 | GTCTCGTTAAAGAGGGAATATTCTTTT | 57.836 | 33.333 | 16.87 | 12.12 | 42.12 | 2.27 |
3715 | 4261 | 0.599204 | CTCAACGGTTGTAGGTGCGT | 60.599 | 55.000 | 19.47 | 0.00 | 0.00 | 5.24 |
3720 | 4266 | 1.964373 | GGTTGTAGGTGCGTGTGGG | 60.964 | 63.158 | 0.00 | 0.00 | 0.00 | 4.61 |
3722 | 4268 | 4.673298 | TGTAGGTGCGTGTGGGCG | 62.673 | 66.667 | 0.00 | 0.00 | 35.06 | 6.13 |
3746 | 4292 | 2.369860 | TGTTAGGATGGCCATAGCTCTG | 59.630 | 50.000 | 20.84 | 0.00 | 39.73 | 3.35 |
3788 | 4334 | 0.382515 | GCACGTGTTGGTTTGGCTTA | 59.617 | 50.000 | 18.38 | 0.00 | 0.00 | 3.09 |
3840 | 4387 | 6.176975 | TGTCACATTTTGATATCAACGGAC | 57.823 | 37.500 | 17.76 | 17.97 | 36.32 | 4.79 |
3841 | 4388 | 5.937540 | TGTCACATTTTGATATCAACGGACT | 59.062 | 36.000 | 17.76 | 0.00 | 36.32 | 3.85 |
3843 | 4390 | 7.040755 | TGTCACATTTTGATATCAACGGACTTT | 60.041 | 33.333 | 17.76 | 0.00 | 36.32 | 2.66 |
3844 | 4391 | 7.807907 | GTCACATTTTGATATCAACGGACTTTT | 59.192 | 33.333 | 17.76 | 0.00 | 36.32 | 2.27 |
3845 | 4392 | 8.356657 | TCACATTTTGATATCAACGGACTTTTT | 58.643 | 29.630 | 17.76 | 0.00 | 35.28 | 1.94 |
3882 | 4622 | 3.237268 | TGTGTATCCAAGTGGGCTTTT | 57.763 | 42.857 | 0.00 | 0.00 | 36.21 | 2.27 |
4033 | 4785 | 8.268850 | TCTTCAAATTAAGTCCAAGCTACATC | 57.731 | 34.615 | 0.00 | 0.00 | 0.00 | 3.06 |
4102 | 6605 | 1.781786 | TTGGCTACAAAACTTGGCCA | 58.218 | 45.000 | 0.00 | 0.00 | 43.29 | 5.36 |
4114 | 6617 | 2.665165 | ACTTGGCCACATCTTCAAACA | 58.335 | 42.857 | 3.88 | 0.00 | 0.00 | 2.83 |
4331 | 6836 | 2.536529 | GCACACCACAATTTTGCAAACG | 60.537 | 45.455 | 12.39 | 6.14 | 33.24 | 3.60 |
4336 | 6841 | 3.997021 | ACCACAATTTTGCAAACGTCAAA | 59.003 | 34.783 | 12.39 | 0.00 | 0.00 | 2.69 |
4350 | 6855 | 4.147219 | ACGTCAAAGCTTTACTTCATGC | 57.853 | 40.909 | 12.25 | 0.00 | 37.75 | 4.06 |
4376 | 6881 | 7.172190 | CCGTATTGATCATTCTTGCTAGATGTT | 59.828 | 37.037 | 0.00 | 0.00 | 0.00 | 2.71 |
4388 | 6893 | 4.253685 | TGCTAGATGTTTGGTCAAGCTAC | 58.746 | 43.478 | 0.00 | 0.00 | 0.00 | 3.58 |
4553 | 7063 | 3.699894 | CTCCAGTCGGGTGCAGCT | 61.700 | 66.667 | 16.65 | 0.00 | 38.11 | 4.24 |
4595 | 7105 | 2.483877 | CGAGTAATCAACTGGCAGCAAA | 59.516 | 45.455 | 15.89 | 0.00 | 39.07 | 3.68 |
4661 | 7171 | 2.509052 | TTCAGAGACTCGGTGTGTTG | 57.491 | 50.000 | 2.42 | 0.00 | 0.00 | 3.33 |
4673 | 7183 | 3.004210 | TCGGTGTGTTGGTCATTTCAATG | 59.996 | 43.478 | 0.00 | 0.00 | 37.75 | 2.82 |
4753 | 7263 | 9.616156 | TTTTATGTGTTACTGGTACTTGAGAAA | 57.384 | 29.630 | 0.00 | 0.00 | 0.00 | 2.52 |
4771 | 7281 | 9.645059 | CTTGAGAAAGTTGTATGTCTTCTCATA | 57.355 | 33.333 | 12.21 | 4.96 | 33.12 | 2.15 |
4839 | 7349 | 9.851686 | TGTGCAATCTTCTGTCCTATAAATATT | 57.148 | 29.630 | 0.00 | 0.00 | 0.00 | 1.28 |
4904 | 7415 | 8.579850 | TTGGATGTGATTGCTAAGTTTTAGAT | 57.420 | 30.769 | 0.21 | 0.00 | 0.00 | 1.98 |
4961 | 7481 | 9.647918 | TCTCATATACTTGAGAGGTCATAAACT | 57.352 | 33.333 | 2.49 | 0.00 | 45.49 | 2.66 |
4967 | 7487 | 5.248477 | ACTTGAGAGGTCATAAACTAAGCCA | 59.752 | 40.000 | 0.00 | 0.00 | 30.85 | 4.75 |
4973 | 7493 | 5.497474 | AGGTCATAAACTAAGCCACGAAAT | 58.503 | 37.500 | 0.00 | 0.00 | 0.00 | 2.17 |
4974 | 7494 | 5.944007 | AGGTCATAAACTAAGCCACGAAATT | 59.056 | 36.000 | 0.00 | 0.00 | 0.00 | 1.82 |
5011 | 7531 | 4.946646 | TGGGCTTGATTTAGAAAGGGAAT | 58.053 | 39.130 | 0.00 | 0.00 | 0.00 | 3.01 |
5012 | 7532 | 4.711355 | TGGGCTTGATTTAGAAAGGGAATG | 59.289 | 41.667 | 0.00 | 0.00 | 0.00 | 2.67 |
5013 | 7533 | 4.711846 | GGGCTTGATTTAGAAAGGGAATGT | 59.288 | 41.667 | 0.00 | 0.00 | 0.00 | 2.71 |
5014 | 7534 | 5.394553 | GGGCTTGATTTAGAAAGGGAATGTG | 60.395 | 44.000 | 0.00 | 0.00 | 0.00 | 3.21 |
5015 | 7535 | 5.418840 | GGCTTGATTTAGAAAGGGAATGTGA | 59.581 | 40.000 | 0.00 | 0.00 | 0.00 | 3.58 |
5016 | 7536 | 6.097412 | GGCTTGATTTAGAAAGGGAATGTGAT | 59.903 | 38.462 | 0.00 | 0.00 | 0.00 | 3.06 |
5017 | 7537 | 7.364144 | GGCTTGATTTAGAAAGGGAATGTGATT | 60.364 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
5019 | 7539 | 6.866480 | TGATTTAGAAAGGGAATGTGATTGC | 58.134 | 36.000 | 0.00 | 0.00 | 0.00 | 3.56 |
5020 | 7540 | 6.664816 | TGATTTAGAAAGGGAATGTGATTGCT | 59.335 | 34.615 | 0.00 | 0.00 | 0.00 | 3.91 |
5021 | 7541 | 7.833682 | TGATTTAGAAAGGGAATGTGATTGCTA | 59.166 | 33.333 | 0.00 | 0.00 | 0.00 | 3.49 |
5023 | 7543 | 8.593945 | TTTAGAAAGGGAATGTGATTGCTAAT | 57.406 | 30.769 | 0.00 | 0.00 | 0.00 | 1.73 |
5027 | 7547 | 7.398332 | AGAAAGGGAATGTGATTGCTAATTTCT | 59.602 | 33.333 | 0.00 | 0.00 | 35.44 | 2.52 |
5030 | 7550 | 8.773033 | AGGGAATGTGATTGCTAATTTCTTAT | 57.227 | 30.769 | 0.00 | 0.00 | 0.00 | 1.73 |
5032 | 7552 | 9.822185 | GGGAATGTGATTGCTAATTTCTTATTT | 57.178 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
5043 | 7563 | 8.462811 | TGCTAATTTCTTATTTATTGGTTGCGA | 58.537 | 29.630 | 0.00 | 0.00 | 0.00 | 5.10 |
5044 | 7564 | 9.463443 | GCTAATTTCTTATTTATTGGTTGCGAT | 57.537 | 29.630 | 0.00 | 0.00 | 0.00 | 4.58 |
5058 | 7578 | 7.966246 | TTGGTTGCGATTACTAAGTTTTAGA | 57.034 | 32.000 | 3.04 | 0.00 | 0.00 | 2.10 |
5060 | 7580 | 6.089820 | TGGTTGCGATTACTAAGTTTTAGACG | 59.910 | 38.462 | 3.04 | 0.00 | 0.00 | 4.18 |
5061 | 7581 | 6.308766 | GGTTGCGATTACTAAGTTTTAGACGA | 59.691 | 38.462 | 3.04 | 0.00 | 0.00 | 4.20 |
5063 | 7583 | 8.378421 | GTTGCGATTACTAAGTTTTAGACGAAT | 58.622 | 33.333 | 3.04 | 0.76 | 0.00 | 3.34 |
5064 | 7584 | 7.891782 | TGCGATTACTAAGTTTTAGACGAATG | 58.108 | 34.615 | 3.04 | 0.00 | 0.00 | 2.67 |
5065 | 7585 | 7.543172 | TGCGATTACTAAGTTTTAGACGAATGT | 59.457 | 33.333 | 3.04 | 0.00 | 0.00 | 2.71 |
5072 | 7592 | 8.995220 | ACTAAGTTTTAGACGAATGTTTATGCA | 58.005 | 29.630 | 3.04 | 0.00 | 0.00 | 3.96 |
5073 | 7593 | 9.262472 | CTAAGTTTTAGACGAATGTTTATGCAC | 57.738 | 33.333 | 0.00 | 0.00 | 0.00 | 4.57 |
5074 | 7594 | 7.435068 | AGTTTTAGACGAATGTTTATGCACT | 57.565 | 32.000 | 0.00 | 0.00 | 0.00 | 4.40 |
5076 | 7596 | 9.162764 | AGTTTTAGACGAATGTTTATGCACTAT | 57.837 | 29.630 | 0.00 | 0.00 | 0.00 | 2.12 |
5099 | 7619 | 5.669164 | TTTTTGAACCCTTGCCCATATAC | 57.331 | 39.130 | 0.00 | 0.00 | 0.00 | 1.47 |
5100 | 7620 | 4.601406 | TTTGAACCCTTGCCCATATACT | 57.399 | 40.909 | 0.00 | 0.00 | 0.00 | 2.12 |
5101 | 7621 | 3.857157 | TGAACCCTTGCCCATATACTC | 57.143 | 47.619 | 0.00 | 0.00 | 0.00 | 2.59 |
5102 | 7622 | 2.441750 | TGAACCCTTGCCCATATACTCC | 59.558 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
5103 | 7623 | 1.446016 | ACCCTTGCCCATATACTCCC | 58.554 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
5104 | 7624 | 1.060561 | ACCCTTGCCCATATACTCCCT | 60.061 | 52.381 | 0.00 | 0.00 | 0.00 | 4.20 |
5105 | 7625 | 1.630878 | CCCTTGCCCATATACTCCCTC | 59.369 | 57.143 | 0.00 | 0.00 | 0.00 | 4.30 |
5107 | 7627 | 1.276421 | CTTGCCCATATACTCCCTCCG | 59.724 | 57.143 | 0.00 | 0.00 | 0.00 | 4.63 |
5108 | 7628 | 0.190069 | TGCCCATATACTCCCTCCGT | 59.810 | 55.000 | 0.00 | 0.00 | 0.00 | 4.69 |
5109 | 7629 | 0.896226 | GCCCATATACTCCCTCCGTC | 59.104 | 60.000 | 0.00 | 0.00 | 0.00 | 4.79 |
5110 | 7630 | 1.558233 | CCCATATACTCCCTCCGTCC | 58.442 | 60.000 | 0.00 | 0.00 | 0.00 | 4.79 |
5112 | 7632 | 1.203137 | CCATATACTCCCTCCGTCCCA | 60.203 | 57.143 | 0.00 | 0.00 | 0.00 | 4.37 |
5113 | 7633 | 2.605257 | CATATACTCCCTCCGTCCCAA | 58.395 | 52.381 | 0.00 | 0.00 | 0.00 | 4.12 |
5114 | 7634 | 2.852714 | TATACTCCCTCCGTCCCAAA | 57.147 | 50.000 | 0.00 | 0.00 | 0.00 | 3.28 |
5115 | 7635 | 1.961133 | ATACTCCCTCCGTCCCAAAA | 58.039 | 50.000 | 0.00 | 0.00 | 0.00 | 2.44 |
5116 | 7636 | 1.732117 | TACTCCCTCCGTCCCAAAAA | 58.268 | 50.000 | 0.00 | 0.00 | 0.00 | 1.94 |
5118 | 7638 | 2.271777 | ACTCCCTCCGTCCCAAAAATA | 58.728 | 47.619 | 0.00 | 0.00 | 0.00 | 1.40 |
5119 | 7639 | 2.645797 | ACTCCCTCCGTCCCAAAAATAA | 59.354 | 45.455 | 0.00 | 0.00 | 0.00 | 1.40 |
5120 | 7640 | 3.279434 | CTCCCTCCGTCCCAAAAATAAG | 58.721 | 50.000 | 0.00 | 0.00 | 0.00 | 1.73 |
5121 | 7641 | 1.749063 | CCCTCCGTCCCAAAAATAAGC | 59.251 | 52.381 | 0.00 | 0.00 | 0.00 | 3.09 |
5123 | 7643 | 2.081462 | CTCCGTCCCAAAAATAAGCGT | 58.919 | 47.619 | 0.00 | 0.00 | 0.00 | 5.07 |
5124 | 7644 | 2.078392 | TCCGTCCCAAAAATAAGCGTC | 58.922 | 47.619 | 0.00 | 0.00 | 0.00 | 5.19 |
5126 | 7646 | 2.413634 | CCGTCCCAAAAATAAGCGTCAC | 60.414 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
5127 | 7647 | 2.723618 | CGTCCCAAAAATAAGCGTCACG | 60.724 | 50.000 | 0.00 | 0.00 | 0.00 | 4.35 |
5129 | 7649 | 2.481185 | TCCCAAAAATAAGCGTCACGAC | 59.519 | 45.455 | 0.00 | 0.00 | 0.00 | 4.34 |
5132 | 7652 | 4.152759 | CCCAAAAATAAGCGTCACGACTAA | 59.847 | 41.667 | 0.00 | 0.00 | 0.00 | 2.24 |
5133 | 7653 | 5.313623 | CCAAAAATAAGCGTCACGACTAAG | 58.686 | 41.667 | 0.00 | 0.00 | 0.00 | 2.18 |
5134 | 7654 | 5.119588 | CCAAAAATAAGCGTCACGACTAAGA | 59.880 | 40.000 | 0.00 | 0.00 | 0.00 | 2.10 |
5135 | 7655 | 6.183360 | CCAAAAATAAGCGTCACGACTAAGAT | 60.183 | 38.462 | 0.00 | 0.00 | 0.00 | 2.40 |
5136 | 7656 | 7.009815 | CCAAAAATAAGCGTCACGACTAAGATA | 59.990 | 37.037 | 0.00 | 0.00 | 0.00 | 1.98 |
5137 | 7657 | 7.681125 | AAAATAAGCGTCACGACTAAGATAG | 57.319 | 36.000 | 0.00 | 0.00 | 0.00 | 2.08 |
5138 | 7658 | 6.615264 | AATAAGCGTCACGACTAAGATAGA | 57.385 | 37.500 | 0.00 | 0.00 | 0.00 | 1.98 |
5139 | 7659 | 6.804770 | ATAAGCGTCACGACTAAGATAGAT | 57.195 | 37.500 | 0.00 | 0.00 | 0.00 | 1.98 |
5142 | 7662 | 4.152759 | AGCGTCACGACTAAGATAGATAGC | 59.847 | 45.833 | 0.00 | 0.00 | 0.00 | 2.97 |
5143 | 7663 | 4.152759 | GCGTCACGACTAAGATAGATAGCT | 59.847 | 45.833 | 0.00 | 0.00 | 0.00 | 3.32 |
5144 | 7664 | 5.613812 | CGTCACGACTAAGATAGATAGCTG | 58.386 | 45.833 | 0.00 | 0.00 | 0.00 | 4.24 |
5145 | 7665 | 5.177881 | CGTCACGACTAAGATAGATAGCTGT | 59.822 | 44.000 | 0.00 | 0.00 | 0.00 | 4.40 |
5148 | 7668 | 6.766467 | TCACGACTAAGATAGATAGCTGTCAA | 59.234 | 38.462 | 13.41 | 0.00 | 34.97 | 3.18 |
5150 | 7670 | 8.079203 | CACGACTAAGATAGATAGCTGTCAATT | 58.921 | 37.037 | 13.41 | 4.34 | 34.97 | 2.32 |
5151 | 7671 | 9.286170 | ACGACTAAGATAGATAGCTGTCAATTA | 57.714 | 33.333 | 13.41 | 5.19 | 34.97 | 1.40 |
5160 | 7680 | 6.952743 | AGATAGCTGTCAATTATCAAAAGCG | 58.047 | 36.000 | 13.41 | 0.00 | 34.43 | 4.68 |
5162 | 7682 | 5.376854 | AGCTGTCAATTATCAAAAGCGTT | 57.623 | 34.783 | 0.00 | 0.00 | 34.43 | 4.84 |
5163 | 7683 | 5.156355 | AGCTGTCAATTATCAAAAGCGTTG | 58.844 | 37.500 | 0.00 | 0.00 | 34.43 | 4.10 |
5164 | 7684 | 4.201523 | GCTGTCAATTATCAAAAGCGTTGC | 60.202 | 41.667 | 0.00 | 0.00 | 0.00 | 4.17 |
5165 | 7685 | 3.911365 | TGTCAATTATCAAAAGCGTTGCG | 59.089 | 39.130 | 0.00 | 0.00 | 0.00 | 4.85 |
5166 | 7686 | 3.300590 | GTCAATTATCAAAAGCGTTGCGG | 59.699 | 43.478 | 0.00 | 0.00 | 0.00 | 5.69 |
5168 | 7688 | 1.240256 | TTATCAAAAGCGTTGCGGGT | 58.760 | 45.000 | 0.00 | 0.00 | 0.00 | 5.28 |
5169 | 7689 | 0.800012 | TATCAAAAGCGTTGCGGGTC | 59.200 | 50.000 | 0.00 | 0.00 | 0.00 | 4.46 |
5170 | 7690 | 2.182614 | ATCAAAAGCGTTGCGGGTCG | 62.183 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
5177 | 7697 | 2.874751 | GTTGCGGGTCGGGATTTG | 59.125 | 61.111 | 0.00 | 0.00 | 0.00 | 2.32 |
5178 | 7698 | 3.059386 | TTGCGGGTCGGGATTTGC | 61.059 | 61.111 | 0.00 | 0.00 | 0.00 | 3.68 |
5181 | 7701 | 3.131478 | CGGGTCGGGATTTGCCAC | 61.131 | 66.667 | 0.00 | 0.00 | 38.95 | 5.01 |
5182 | 7702 | 3.131478 | GGGTCGGGATTTGCCACG | 61.131 | 66.667 | 0.00 | 0.00 | 38.95 | 4.94 |
5183 | 7703 | 2.046700 | GGTCGGGATTTGCCACGA | 60.047 | 61.111 | 0.00 | 0.00 | 38.95 | 4.35 |
5184 | 7704 | 3.174788 | GTCGGGATTTGCCACGAC | 58.825 | 61.111 | 2.90 | 2.90 | 45.87 | 4.34 |
5185 | 7705 | 3.065306 | TCGGGATTTGCCACGACT | 58.935 | 55.556 | 0.00 | 0.00 | 38.95 | 4.18 |
5186 | 7706 | 2.278849 | TCGGGATTTGCCACGACTA | 58.721 | 52.632 | 0.00 | 0.00 | 38.95 | 2.59 |
5187 | 7707 | 0.609151 | TCGGGATTTGCCACGACTAA | 59.391 | 50.000 | 0.00 | 0.00 | 38.95 | 2.24 |
5188 | 7708 | 1.006832 | CGGGATTTGCCACGACTAAG | 58.993 | 55.000 | 0.00 | 0.00 | 38.95 | 2.18 |
5189 | 7709 | 1.674817 | CGGGATTTGCCACGACTAAGT | 60.675 | 52.381 | 0.00 | 0.00 | 38.95 | 2.24 |
5202 | 7722 | 3.699538 | ACGACTAAGTGGAGATGTATGCA | 59.300 | 43.478 | 0.00 | 0.00 | 0.00 | 3.96 |
5204 | 7724 | 5.163405 | ACGACTAAGTGGAGATGTATGCAAT | 60.163 | 40.000 | 0.00 | 0.00 | 0.00 | 3.56 |
5206 | 7726 | 6.923508 | CGACTAAGTGGAGATGTATGCAATAA | 59.076 | 38.462 | 0.00 | 0.00 | 0.00 | 1.40 |
5207 | 7727 | 7.438160 | CGACTAAGTGGAGATGTATGCAATAAA | 59.562 | 37.037 | 0.00 | 0.00 | 0.00 | 1.40 |
5208 | 7728 | 9.109393 | GACTAAGTGGAGATGTATGCAATAAAA | 57.891 | 33.333 | 0.00 | 0.00 | 0.00 | 1.52 |
5239 | 7897 | 4.021016 | AGAGTAGAAACGGAATGAGTGCTT | 60.021 | 41.667 | 0.00 | 0.00 | 0.00 | 3.91 |
5243 | 7901 | 4.137543 | AGAAACGGAATGAGTGCTTTTCT | 58.862 | 39.130 | 0.47 | 0.47 | 40.07 | 2.52 |
5245 | 7903 | 5.763204 | AGAAACGGAATGAGTGCTTTTCTAA | 59.237 | 36.000 | 4.27 | 0.00 | 42.11 | 2.10 |
5246 | 7904 | 5.358298 | AACGGAATGAGTGCTTTTCTAAC | 57.642 | 39.130 | 0.00 | 0.00 | 0.00 | 2.34 |
5247 | 7905 | 4.642429 | ACGGAATGAGTGCTTTTCTAACT | 58.358 | 39.130 | 0.00 | 0.00 | 0.00 | 2.24 |
5248 | 7906 | 5.063880 | ACGGAATGAGTGCTTTTCTAACTT | 58.936 | 37.500 | 0.00 | 0.00 | 0.00 | 2.66 |
5249 | 7907 | 6.228258 | ACGGAATGAGTGCTTTTCTAACTTA | 58.772 | 36.000 | 0.00 | 0.00 | 0.00 | 2.24 |
5250 | 7908 | 6.879458 | ACGGAATGAGTGCTTTTCTAACTTAT | 59.121 | 34.615 | 0.00 | 0.00 | 0.00 | 1.73 |
5251 | 7909 | 8.038944 | ACGGAATGAGTGCTTTTCTAACTTATA | 58.961 | 33.333 | 0.00 | 0.00 | 0.00 | 0.98 |
5252 | 7910 | 9.046296 | CGGAATGAGTGCTTTTCTAACTTATAT | 57.954 | 33.333 | 0.00 | 0.00 | 0.00 | 0.86 |
5257 | 7915 | 9.326413 | TGAGTGCTTTTCTAACTTATATTAGGC | 57.674 | 33.333 | 0.00 | 0.00 | 33.65 | 3.93 |
5259 | 7917 | 9.331282 | AGTGCTTTTCTAACTTATATTAGGCAG | 57.669 | 33.333 | 0.00 | 0.00 | 30.93 | 4.85 |
5261 | 7919 | 9.681062 | TGCTTTTCTAACTTATATTAGGCAGTT | 57.319 | 29.630 | 0.00 | 0.00 | 33.65 | 3.16 |
5280 | 7938 | 8.748412 | AGGCAGTTAGATATTCAGATGATACTC | 58.252 | 37.037 | 0.00 | 0.00 | 0.00 | 2.59 |
5281 | 7939 | 8.526978 | GGCAGTTAGATATTCAGATGATACTCA | 58.473 | 37.037 | 0.00 | 0.00 | 0.00 | 3.41 |
5290 | 7948 | 9.819267 | ATATTCAGATGATACTCATGCTATGTG | 57.181 | 33.333 | 0.00 | 0.00 | 37.20 | 3.21 |
5291 | 7949 | 5.476614 | TCAGATGATACTCATGCTATGTGC | 58.523 | 41.667 | 0.00 | 0.00 | 37.20 | 4.57 |
5292 | 7950 | 5.245526 | TCAGATGATACTCATGCTATGTGCT | 59.754 | 40.000 | 0.00 | 0.00 | 37.20 | 4.40 |
5293 | 7951 | 5.348997 | CAGATGATACTCATGCTATGTGCTG | 59.651 | 44.000 | 0.00 | 0.00 | 37.20 | 4.41 |
5313 | 8053 | 1.882623 | GCTGAGGGAACAAAGACCTTG | 59.117 | 52.381 | 0.00 | 0.00 | 41.19 | 3.61 |
5333 | 8073 | 9.589111 | GACCTTGTTAATAGTAGAAAAGGAGAG | 57.411 | 37.037 | 12.05 | 0.00 | 36.91 | 3.20 |
5334 | 8074 | 9.322769 | ACCTTGTTAATAGTAGAAAAGGAGAGA | 57.677 | 33.333 | 12.05 | 0.00 | 36.91 | 3.10 |
5341 | 8081 | 5.685520 | AGTAGAAAAGGAGAGAATGGACC | 57.314 | 43.478 | 0.00 | 0.00 | 0.00 | 4.46 |
5342 | 8082 | 5.094387 | AGTAGAAAAGGAGAGAATGGACCA | 58.906 | 41.667 | 0.00 | 0.00 | 0.00 | 4.02 |
5343 | 8083 | 4.566426 | AGAAAAGGAGAGAATGGACCAG | 57.434 | 45.455 | 0.00 | 0.00 | 0.00 | 4.00 |
5344 | 8084 | 4.171234 | AGAAAAGGAGAGAATGGACCAGA | 58.829 | 43.478 | 0.00 | 0.00 | 0.00 | 3.86 |
5346 | 8086 | 5.966935 | AGAAAAGGAGAGAATGGACCAGATA | 59.033 | 40.000 | 0.00 | 0.00 | 0.00 | 1.98 |
5347 | 8087 | 5.885449 | AAAGGAGAGAATGGACCAGATAG | 57.115 | 43.478 | 0.00 | 0.00 | 0.00 | 2.08 |
5348 | 8088 | 4.551215 | AGGAGAGAATGGACCAGATAGT | 57.449 | 45.455 | 0.00 | 0.00 | 0.00 | 2.12 |
5349 | 8089 | 4.479158 | AGGAGAGAATGGACCAGATAGTC | 58.521 | 47.826 | 0.00 | 0.00 | 35.95 | 2.59 |
5350 | 8090 | 4.078922 | AGGAGAGAATGGACCAGATAGTCA | 60.079 | 45.833 | 0.00 | 0.00 | 38.59 | 3.41 |
5351 | 8091 | 4.837860 | GGAGAGAATGGACCAGATAGTCAT | 59.162 | 45.833 | 0.00 | 0.00 | 38.59 | 3.06 |
5352 | 8092 | 5.306678 | GGAGAGAATGGACCAGATAGTCATT | 59.693 | 44.000 | 0.00 | 0.00 | 38.59 | 2.57 |
5353 | 8093 | 6.183361 | GGAGAGAATGGACCAGATAGTCATTT | 60.183 | 42.308 | 0.00 | 0.00 | 38.59 | 2.32 |
5354 | 8094 | 6.825610 | AGAGAATGGACCAGATAGTCATTTC | 58.174 | 40.000 | 0.00 | 0.00 | 38.59 | 2.17 |
5355 | 8095 | 6.385176 | AGAGAATGGACCAGATAGTCATTTCA | 59.615 | 38.462 | 0.00 | 0.00 | 38.59 | 2.69 |
5356 | 8096 | 7.072202 | AGAGAATGGACCAGATAGTCATTTCAT | 59.928 | 37.037 | 0.00 | 0.00 | 38.59 | 2.57 |
5358 | 8098 | 8.888419 | AGAATGGACCAGATAGTCATTTCATAT | 58.112 | 33.333 | 0.00 | 0.00 | 38.59 | 1.78 |
5359 | 8099 | 9.512588 | GAATGGACCAGATAGTCATTTCATATT | 57.487 | 33.333 | 0.00 | 0.00 | 38.59 | 1.28 |
5400 | 8263 | 6.924612 | CCGCATTCATAATTTCCATGATTCAA | 59.075 | 34.615 | 0.00 | 0.00 | 32.63 | 2.69 |
5403 | 8266 | 7.386848 | GCATTCATAATTTCCATGATTCAAGGG | 59.613 | 37.037 | 8.01 | 4.93 | 32.63 | 3.95 |
5404 | 8267 | 6.982160 | TCATAATTTCCATGATTCAAGGGG | 57.018 | 37.500 | 8.01 | 2.57 | 0.00 | 4.79 |
5405 | 8268 | 5.840149 | TCATAATTTCCATGATTCAAGGGGG | 59.160 | 40.000 | 8.01 | 0.24 | 0.00 | 5.40 |
5424 | 8287 | 1.156736 | GGGGGATTATCAATGTCGCG | 58.843 | 55.000 | 0.00 | 0.00 | 0.00 | 5.87 |
5425 | 8288 | 1.156736 | GGGGATTATCAATGTCGCGG | 58.843 | 55.000 | 6.13 | 0.00 | 0.00 | 6.46 |
5426 | 8289 | 0.517316 | GGGATTATCAATGTCGCGGC | 59.483 | 55.000 | 2.29 | 2.29 | 0.00 | 6.53 |
5427 | 8290 | 1.512926 | GGATTATCAATGTCGCGGCT | 58.487 | 50.000 | 13.81 | 0.00 | 0.00 | 5.52 |
5428 | 8291 | 2.611971 | GGGATTATCAATGTCGCGGCTA | 60.612 | 50.000 | 13.81 | 0.00 | 0.00 | 3.93 |
5429 | 8292 | 2.668457 | GGATTATCAATGTCGCGGCTAG | 59.332 | 50.000 | 13.81 | 1.16 | 0.00 | 3.42 |
5441 | 10096 | 0.526310 | GCGGCTAGCTGAATTTTGCC | 60.526 | 55.000 | 27.93 | 2.64 | 44.04 | 4.52 |
5445 | 10100 | 2.692041 | GGCTAGCTGAATTTTGCCATCT | 59.308 | 45.455 | 15.72 | 0.00 | 40.04 | 2.90 |
5448 | 10103 | 5.707298 | GGCTAGCTGAATTTTGCCATCTATA | 59.293 | 40.000 | 15.72 | 0.00 | 40.04 | 1.31 |
5449 | 10104 | 6.128063 | GGCTAGCTGAATTTTGCCATCTATAG | 60.128 | 42.308 | 15.72 | 0.00 | 40.04 | 1.31 |
5450 | 10105 | 5.702349 | AGCTGAATTTTGCCATCTATAGC | 57.298 | 39.130 | 0.00 | 0.00 | 0.00 | 2.97 |
5451 | 10106 | 5.135383 | AGCTGAATTTTGCCATCTATAGCA | 58.865 | 37.500 | 0.00 | 0.00 | 37.18 | 3.49 |
5452 | 10107 | 5.241064 | AGCTGAATTTTGCCATCTATAGCAG | 59.759 | 40.000 | 0.00 | 0.00 | 40.73 | 4.24 |
5453 | 10108 | 5.240183 | GCTGAATTTTGCCATCTATAGCAGA | 59.760 | 40.000 | 0.00 | 0.00 | 40.73 | 4.26 |
5454 | 10109 | 6.238842 | GCTGAATTTTGCCATCTATAGCAGAA | 60.239 | 38.462 | 0.00 | 0.00 | 40.73 | 3.02 |
5456 | 10111 | 7.879070 | TGAATTTTGCCATCTATAGCAGAATC | 58.121 | 34.615 | 0.00 | 0.00 | 41.41 | 2.52 |
5463 | 10317 | 6.877855 | TGCCATCTATAGCAGAATCTTGATTC | 59.122 | 38.462 | 13.71 | 13.71 | 36.67 | 2.52 |
5467 | 10321 | 7.565190 | TCTATAGCAGAATCTTGATTCCCAT | 57.435 | 36.000 | 16.87 | 9.44 | 0.00 | 4.00 |
5477 | 10331 | 7.814264 | AATCTTGATTCCCATGATTCAGTAC | 57.186 | 36.000 | 0.00 | 0.00 | 42.50 | 2.73 |
5486 | 10340 | 6.434302 | TCCCATGATTCAGTACCAAATCAAT | 58.566 | 36.000 | 18.94 | 9.26 | 43.14 | 2.57 |
5488 | 10342 | 6.461927 | CCCATGATTCAGTACCAAATCAATGG | 60.462 | 42.308 | 22.75 | 22.75 | 43.14 | 3.16 |
5507 | 10361 | 2.092323 | GGTATGAGTTGAAACCTGCCC | 58.908 | 52.381 | 0.00 | 0.00 | 0.00 | 5.36 |
5508 | 10362 | 2.554344 | GGTATGAGTTGAAACCTGCCCA | 60.554 | 50.000 | 0.00 | 0.00 | 0.00 | 5.36 |
5577 | 10431 | 1.202794 | TGAAAGATGGACTGTGCAGCA | 60.203 | 47.619 | 19.38 | 0.00 | 0.00 | 4.41 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 2.688446 | CCTATGACGTGCAAGACTAGGA | 59.312 | 50.000 | 6.65 | 0.00 | 0.00 | 2.94 |
1 | 2 | 2.223829 | CCCTATGACGTGCAAGACTAGG | 60.224 | 54.545 | 6.65 | 12.11 | 0.00 | 3.02 |
2 | 3 | 2.427453 | ACCCTATGACGTGCAAGACTAG | 59.573 | 50.000 | 6.65 | 4.10 | 0.00 | 2.57 |
3 | 4 | 2.426024 | GACCCTATGACGTGCAAGACTA | 59.574 | 50.000 | 6.65 | 0.00 | 0.00 | 2.59 |
4 | 5 | 1.204941 | GACCCTATGACGTGCAAGACT | 59.795 | 52.381 | 6.65 | 0.00 | 0.00 | 3.24 |
207 | 209 | 3.312421 | CGACAAGGAAAGTGACATGTGTT | 59.688 | 43.478 | 1.15 | 0.00 | 0.00 | 3.32 |
211 | 213 | 2.155732 | CGACGACAAGGAAAGTGACATG | 59.844 | 50.000 | 0.00 | 0.00 | 0.00 | 3.21 |
212 | 214 | 2.404215 | CGACGACAAGGAAAGTGACAT | 58.596 | 47.619 | 0.00 | 0.00 | 0.00 | 3.06 |
418 | 420 | 5.491070 | TGATCCTTTAGTGAACATGTGAGG | 58.509 | 41.667 | 0.00 | 0.00 | 0.00 | 3.86 |
520 | 542 | 6.495706 | AGGAAAAATCAACGACAAGAAAGAC | 58.504 | 36.000 | 0.00 | 0.00 | 0.00 | 3.01 |
859 | 883 | 8.674263 | ATTATGTGAAAAGAAACAAATTGCCA | 57.326 | 26.923 | 0.00 | 0.00 | 0.00 | 4.92 |
900 | 924 | 5.964958 | TCAAAACAATTAAGGCCTCTGAG | 57.035 | 39.130 | 5.23 | 0.00 | 0.00 | 3.35 |
901 | 925 | 6.945435 | TGTATCAAAACAATTAAGGCCTCTGA | 59.055 | 34.615 | 5.23 | 0.00 | 0.00 | 3.27 |
937 | 962 | 5.893824 | TGCTCTCCAATATGACTGTAGAAGA | 59.106 | 40.000 | 0.00 | 0.00 | 0.00 | 2.87 |
938 | 963 | 6.154203 | TGCTCTCCAATATGACTGTAGAAG | 57.846 | 41.667 | 0.00 | 0.00 | 0.00 | 2.85 |
1076 | 1136 | 5.911378 | AAATGTTTGTTGGTGCCAAAAAT | 57.089 | 30.435 | 7.34 | 0.00 | 37.70 | 1.82 |
1081 | 1141 | 4.375272 | CACATAAATGTTTGTTGGTGCCA | 58.625 | 39.130 | 0.00 | 0.00 | 39.39 | 4.92 |
1319 | 1420 | 2.963371 | GTCCTCAACTCCTCGCGT | 59.037 | 61.111 | 5.77 | 0.00 | 0.00 | 6.01 |
1337 | 1438 | 1.156736 | AGCAAGCAACACATCGGTAC | 58.843 | 50.000 | 0.00 | 0.00 | 0.00 | 3.34 |
1375 | 1476 | 2.031870 | GGCAAACCTCAACTTTCAGGT | 58.968 | 47.619 | 0.00 | 0.00 | 45.59 | 4.00 |
1531 | 1632 | 6.926630 | AGAATTTAGCCATTGGGTGTTTAA | 57.073 | 33.333 | 17.59 | 6.81 | 34.28 | 1.52 |
1537 | 1638 | 3.172339 | TGCAAGAATTTAGCCATTGGGT | 58.828 | 40.909 | 12.79 | 12.79 | 37.19 | 4.51 |
1698 | 1911 | 9.282247 | CTTTAGATGCACATTAAAATGAGTGAC | 57.718 | 33.333 | 9.60 | 0.00 | 39.67 | 3.67 |
1844 | 2058 | 3.409026 | AGGAGGCTAATGCTTAATCCG | 57.591 | 47.619 | 0.00 | 0.00 | 39.59 | 4.18 |
1908 | 2122 | 7.659799 | TGCTGCTTTTAGTAAGTCTTGACAATA | 59.340 | 33.333 | 0.00 | 0.00 | 0.00 | 1.90 |
1917 | 2132 | 3.437049 | CAGGGTGCTGCTTTTAGTAAGTC | 59.563 | 47.826 | 0.00 | 0.00 | 0.00 | 3.01 |
1930 | 2145 | 3.576078 | TCCCATTTATACAGGGTGCTG | 57.424 | 47.619 | 0.00 | 0.00 | 43.31 | 4.41 |
1945 | 2160 | 4.040339 | GGGTGTTGAAATTCACTTTCCCAT | 59.960 | 41.667 | 15.02 | 0.00 | 42.23 | 4.00 |
1946 | 2161 | 3.386402 | GGGTGTTGAAATTCACTTTCCCA | 59.614 | 43.478 | 15.02 | 0.00 | 42.23 | 4.37 |
1992 | 2207 | 2.094234 | GCACGGGGAAAGCATTTATTGT | 60.094 | 45.455 | 0.00 | 0.00 | 39.27 | 2.71 |
1996 | 2211 | 0.606944 | ACGCACGGGGAAAGCATTTA | 60.607 | 50.000 | 0.00 | 0.00 | 39.27 | 1.40 |
1998 | 2213 | 2.282180 | ACGCACGGGGAAAGCATT | 60.282 | 55.556 | 0.00 | 0.00 | 0.00 | 3.56 |
1999 | 2214 | 3.055719 | CACGCACGGGGAAAGCAT | 61.056 | 61.111 | 0.00 | 0.00 | 0.00 | 3.79 |
2025 | 2240 | 5.622770 | AACCAATTTCGAACATACTGTCC | 57.377 | 39.130 | 0.00 | 0.00 | 0.00 | 4.02 |
2051 | 2575 | 6.545508 | CATAGTCGCAAACTTGATTCATTCA | 58.454 | 36.000 | 0.00 | 0.00 | 39.55 | 2.57 |
2125 | 2649 | 0.459489 | CGGTTGGGCATATTTGGTGG | 59.541 | 55.000 | 0.00 | 0.00 | 0.00 | 4.61 |
2143 | 2667 | 4.572389 | AGATTCTGGTTAGTATTGCTTGCG | 59.428 | 41.667 | 0.00 | 0.00 | 0.00 | 4.85 |
2188 | 2712 | 9.056005 | TCATATTTTCCATCTATGCTTGTGTAC | 57.944 | 33.333 | 0.00 | 0.00 | 0.00 | 2.90 |
2237 | 2761 | 6.764379 | TGAACAATAGTCTCCACACACATAA | 58.236 | 36.000 | 0.00 | 0.00 | 0.00 | 1.90 |
2344 | 2868 | 3.266772 | TGGGCAGTTATTCAATCAGAGGT | 59.733 | 43.478 | 0.00 | 0.00 | 0.00 | 3.85 |
2515 | 3041 | 9.614792 | AGTCTAAACTGGTATGATGGTTTTATC | 57.385 | 33.333 | 0.00 | 0.00 | 33.32 | 1.75 |
2517 | 3043 | 9.802039 | AAAGTCTAAACTGGTATGATGGTTTTA | 57.198 | 29.630 | 0.00 | 0.00 | 35.36 | 1.52 |
2630 | 3156 | 4.038271 | TCACTCCTTTGCTTGATTGGAT | 57.962 | 40.909 | 0.00 | 0.00 | 0.00 | 3.41 |
2640 | 3166 | 2.555757 | ACAAGCATCTTCACTCCTTTGC | 59.444 | 45.455 | 0.00 | 0.00 | 0.00 | 3.68 |
2644 | 3170 | 1.066573 | CGGACAAGCATCTTCACTCCT | 60.067 | 52.381 | 0.00 | 0.00 | 0.00 | 3.69 |
2646 | 3172 | 2.370281 | TCGGACAAGCATCTTCACTC | 57.630 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
2649 | 3175 | 6.596309 | ATCTATATCGGACAAGCATCTTCA | 57.404 | 37.500 | 0.00 | 0.00 | 0.00 | 3.02 |
2713 | 3241 | 7.858382 | TGTTTTCACCGTGTTTCAAATATAGTG | 59.142 | 33.333 | 0.00 | 0.00 | 0.00 | 2.74 |
2723 | 3251 | 6.664515 | TCTCAATATGTTTTCACCGTGTTTC | 58.335 | 36.000 | 0.00 | 0.00 | 0.00 | 2.78 |
2801 | 3329 | 6.956299 | AATGCATAACTTCATTGCTTCAAC | 57.044 | 33.333 | 0.00 | 0.00 | 37.28 | 3.18 |
2864 | 3393 | 7.214381 | ACACAACACTAACATACTAGAGCAAA | 58.786 | 34.615 | 0.00 | 0.00 | 0.00 | 3.68 |
2867 | 3396 | 7.091443 | AGAACACAACACTAACATACTAGAGC | 58.909 | 38.462 | 0.00 | 0.00 | 0.00 | 4.09 |
2950 | 3479 | 0.100325 | TGCTCAATTTATTGCCGGCG | 59.900 | 50.000 | 23.90 | 4.41 | 37.68 | 6.46 |
2952 | 3481 | 2.094803 | TGTGTGCTCAATTTATTGCCGG | 60.095 | 45.455 | 0.00 | 0.00 | 37.68 | 6.13 |
3017 | 3548 | 6.719829 | CCCTAACAAGGTATATCCAATTTCCC | 59.280 | 42.308 | 0.00 | 0.00 | 39.02 | 3.97 |
3055 | 3586 | 2.352388 | CAAGATTTCGCCTCCGGTTAA | 58.648 | 47.619 | 0.00 | 0.00 | 34.56 | 2.01 |
3056 | 3587 | 1.406341 | CCAAGATTTCGCCTCCGGTTA | 60.406 | 52.381 | 0.00 | 0.00 | 34.56 | 2.85 |
3061 | 3592 | 1.740025 | CAAGACCAAGATTTCGCCTCC | 59.260 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
3067 | 3598 | 5.514274 | TGGTGAAACAAGACCAAGATTTC | 57.486 | 39.130 | 0.00 | 0.00 | 39.36 | 2.17 |
3197 | 3730 | 6.560253 | ACAGTGTGTCAAATTTATCCTGTC | 57.440 | 37.500 | 0.00 | 0.00 | 0.00 | 3.51 |
3220 | 3753 | 1.694844 | TCATGGACGCGTATCCCTAA | 58.305 | 50.000 | 13.97 | 0.00 | 38.06 | 2.69 |
3229 | 3762 | 1.190984 | CGATGAGAATTCATGGACGCG | 59.809 | 52.381 | 3.53 | 3.53 | 44.01 | 6.01 |
3232 | 3765 | 8.818141 | TTAATAGACGATGAGAATTCATGGAC | 57.182 | 34.615 | 8.44 | 0.00 | 44.01 | 4.02 |
3238 | 3771 | 7.658179 | TGGCATTAATAGACGATGAGAATTC | 57.342 | 36.000 | 0.00 | 0.00 | 0.00 | 2.17 |
3317 | 3850 | 7.754851 | AGGATAGTAAGAAGCTAGTTCTAGC | 57.245 | 40.000 | 20.20 | 20.20 | 45.44 | 3.42 |
3325 | 3858 | 6.948886 | CCACAGGATAGGATAGTAAGAAGCTA | 59.051 | 42.308 | 0.00 | 0.00 | 0.00 | 3.32 |
3346 | 3879 | 2.687935 | GACTTGCCTGAAAAACTCCACA | 59.312 | 45.455 | 0.00 | 0.00 | 0.00 | 4.17 |
3359 | 3892 | 3.575256 | TGCATCTTTGATTTGACTTGCCT | 59.425 | 39.130 | 0.00 | 0.00 | 0.00 | 4.75 |
3362 | 3895 | 6.583806 | GGTAGTTGCATCTTTGATTTGACTTG | 59.416 | 38.462 | 1.93 | 0.00 | 0.00 | 3.16 |
3448 | 3981 | 1.906333 | GGGAACAACCACCCGCATT | 60.906 | 57.895 | 0.00 | 0.00 | 41.20 | 3.56 |
3463 | 3996 | 0.544357 | ATCTCTGGTGAACCACGGGA | 60.544 | 55.000 | 0.00 | 1.32 | 42.01 | 5.14 |
3467 | 4000 | 3.756963 | GGGTTTAATCTCTGGTGAACCAC | 59.243 | 47.826 | 0.00 | 0.00 | 42.01 | 4.16 |
3533 | 4066 | 1.521450 | GAGAACGTCGTCTCCCACCA | 61.521 | 60.000 | 6.04 | 0.00 | 38.51 | 4.17 |
3553 | 4086 | 5.220710 | ACCACAGATGCCTCATTATCTAC | 57.779 | 43.478 | 0.00 | 0.00 | 32.62 | 2.59 |
3715 | 4261 | 0.747644 | CATCCTAACATGCGCCCACA | 60.748 | 55.000 | 4.18 | 0.00 | 0.00 | 4.17 |
3720 | 4266 | 1.174712 | ATGGCCATCCTAACATGCGC | 61.175 | 55.000 | 14.09 | 0.00 | 0.00 | 6.09 |
3722 | 4268 | 1.815003 | GCTATGGCCATCCTAACATGC | 59.185 | 52.381 | 24.80 | 10.78 | 0.00 | 4.06 |
3746 | 4292 | 1.802960 | CCAATGTGAGTGACTGAGTGC | 59.197 | 52.381 | 0.00 | 0.00 | 0.00 | 4.40 |
3788 | 4334 | 6.665992 | TCCAATATGTTTCGGTAGCTAGAT | 57.334 | 37.500 | 0.00 | 0.00 | 0.00 | 1.98 |
3844 | 4391 | 8.956426 | GGATACACAAGATGTTATCTCCAAAAA | 58.044 | 33.333 | 0.00 | 0.00 | 43.19 | 1.94 |
3845 | 4392 | 8.106462 | TGGATACACAAGATGTTATCTCCAAAA | 58.894 | 33.333 | 0.00 | 0.00 | 46.17 | 2.44 |
3902 | 4642 | 2.811431 | CAAGCCAACATTGTAGTTCGGA | 59.189 | 45.455 | 0.00 | 0.00 | 0.00 | 4.55 |
3949 | 4689 | 2.033049 | GTCTCGCGCTAGATACAAAGGA | 59.967 | 50.000 | 15.28 | 0.00 | 0.00 | 3.36 |
3951 | 4691 | 2.784380 | GTGTCTCGCGCTAGATACAAAG | 59.216 | 50.000 | 26.68 | 0.00 | 37.51 | 2.77 |
4033 | 4785 | 7.680588 | GCATCTTAGCAGGAAATAAAGAACTGG | 60.681 | 40.741 | 0.00 | 0.00 | 30.56 | 4.00 |
4102 | 6605 | 4.990526 | AGGACCTGAATGTTTGAAGATGT | 58.009 | 39.130 | 0.00 | 0.00 | 0.00 | 3.06 |
4114 | 6617 | 6.712547 | GCTATGCACTTTATTAGGACCTGAAT | 59.287 | 38.462 | 3.53 | 3.13 | 0.00 | 2.57 |
4196 | 6701 | 5.255397 | AGACCCCAATGAATTCTGTACAA | 57.745 | 39.130 | 7.05 | 0.00 | 0.00 | 2.41 |
4331 | 6836 | 3.058224 | ACGGCATGAAGTAAAGCTTTGAC | 60.058 | 43.478 | 22.02 | 14.62 | 37.59 | 3.18 |
4336 | 6841 | 4.513442 | TCAATACGGCATGAAGTAAAGCT | 58.487 | 39.130 | 0.00 | 0.00 | 0.00 | 3.74 |
4350 | 6855 | 6.648310 | ACATCTAGCAAGAATGATCAATACGG | 59.352 | 38.462 | 0.00 | 0.00 | 34.73 | 4.02 |
4423 | 6933 | 1.726791 | CAGCAGCATTACGAAACGAGT | 59.273 | 47.619 | 0.00 | 0.00 | 0.00 | 4.18 |
4553 | 7063 | 1.002069 | ATGGTTCATCTTGGCTCCCA | 58.998 | 50.000 | 0.00 | 0.00 | 0.00 | 4.37 |
4646 | 7156 | 0.387929 | TGACCAACACACCGAGTCTC | 59.612 | 55.000 | 0.00 | 0.00 | 0.00 | 3.36 |
4673 | 7183 | 6.220930 | TGGACTTGTAGTGTCACTTATTGTC | 58.779 | 40.000 | 11.54 | 13.73 | 36.26 | 3.18 |
4874 | 7385 | 9.995003 | AAAACTTAGCAATCACATCCAATAAAA | 57.005 | 25.926 | 0.00 | 0.00 | 0.00 | 1.52 |
4974 | 7494 | 1.305971 | CCCATTTGTGGGCCATCCA | 60.306 | 57.895 | 10.70 | 0.00 | 42.99 | 3.41 |
4982 | 7502 | 5.404466 | TTCTAAATCAAGCCCATTTGTGG | 57.596 | 39.130 | 0.00 | 0.00 | 0.00 | 4.17 |
5016 | 7536 | 9.081997 | CGCAACCAATAAATAAGAAATTAGCAA | 57.918 | 29.630 | 0.00 | 0.00 | 0.00 | 3.91 |
5017 | 7537 | 8.462811 | TCGCAACCAATAAATAAGAAATTAGCA | 58.537 | 29.630 | 0.00 | 0.00 | 0.00 | 3.49 |
5032 | 7552 | 9.656040 | TCTAAAACTTAGTAATCGCAACCAATA | 57.344 | 29.630 | 0.00 | 0.00 | 0.00 | 1.90 |
5033 | 7553 | 8.448615 | GTCTAAAACTTAGTAATCGCAACCAAT | 58.551 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
5034 | 7554 | 7.359431 | CGTCTAAAACTTAGTAATCGCAACCAA | 60.359 | 37.037 | 0.00 | 0.00 | 0.00 | 3.67 |
5035 | 7555 | 6.089820 | CGTCTAAAACTTAGTAATCGCAACCA | 59.910 | 38.462 | 0.00 | 0.00 | 0.00 | 3.67 |
5036 | 7556 | 6.308766 | TCGTCTAAAACTTAGTAATCGCAACC | 59.691 | 38.462 | 0.00 | 0.00 | 0.00 | 3.77 |
5037 | 7557 | 7.269435 | TCGTCTAAAACTTAGTAATCGCAAC | 57.731 | 36.000 | 0.00 | 0.00 | 0.00 | 4.17 |
5038 | 7558 | 7.872163 | TTCGTCTAAAACTTAGTAATCGCAA | 57.128 | 32.000 | 0.00 | 0.00 | 0.00 | 4.85 |
5040 | 7560 | 7.892803 | ACATTCGTCTAAAACTTAGTAATCGC | 58.107 | 34.615 | 0.00 | 0.00 | 0.00 | 4.58 |
5047 | 7567 | 9.262472 | GTGCATAAACATTCGTCTAAAACTTAG | 57.738 | 33.333 | 0.00 | 0.00 | 0.00 | 2.18 |
5048 | 7568 | 8.995220 | AGTGCATAAACATTCGTCTAAAACTTA | 58.005 | 29.630 | 0.00 | 0.00 | 0.00 | 2.24 |
5049 | 7569 | 7.871853 | AGTGCATAAACATTCGTCTAAAACTT | 58.128 | 30.769 | 0.00 | 0.00 | 0.00 | 2.66 |
5051 | 7571 | 9.769093 | AATAGTGCATAAACATTCGTCTAAAAC | 57.231 | 29.630 | 0.00 | 0.00 | 0.00 | 2.43 |
5078 | 7598 | 4.941713 | AGTATATGGGCAAGGGTTCAAAA | 58.058 | 39.130 | 0.00 | 0.00 | 0.00 | 2.44 |
5079 | 7599 | 4.532834 | GAGTATATGGGCAAGGGTTCAAA | 58.467 | 43.478 | 0.00 | 0.00 | 0.00 | 2.69 |
5080 | 7600 | 3.117663 | GGAGTATATGGGCAAGGGTTCAA | 60.118 | 47.826 | 0.00 | 0.00 | 0.00 | 2.69 |
5081 | 7601 | 2.441750 | GGAGTATATGGGCAAGGGTTCA | 59.558 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
5082 | 7602 | 2.224793 | GGGAGTATATGGGCAAGGGTTC | 60.225 | 54.545 | 0.00 | 0.00 | 0.00 | 3.62 |
5083 | 7603 | 1.780919 | GGGAGTATATGGGCAAGGGTT | 59.219 | 52.381 | 0.00 | 0.00 | 0.00 | 4.11 |
5084 | 7604 | 1.060561 | AGGGAGTATATGGGCAAGGGT | 60.061 | 52.381 | 0.00 | 0.00 | 0.00 | 4.34 |
5085 | 7605 | 1.630878 | GAGGGAGTATATGGGCAAGGG | 59.369 | 57.143 | 0.00 | 0.00 | 0.00 | 3.95 |
5086 | 7606 | 1.630878 | GGAGGGAGTATATGGGCAAGG | 59.369 | 57.143 | 0.00 | 0.00 | 0.00 | 3.61 |
5087 | 7607 | 1.276421 | CGGAGGGAGTATATGGGCAAG | 59.724 | 57.143 | 0.00 | 0.00 | 0.00 | 4.01 |
5088 | 7608 | 1.348064 | CGGAGGGAGTATATGGGCAA | 58.652 | 55.000 | 0.00 | 0.00 | 0.00 | 4.52 |
5089 | 7609 | 0.190069 | ACGGAGGGAGTATATGGGCA | 59.810 | 55.000 | 0.00 | 0.00 | 0.00 | 5.36 |
5090 | 7610 | 0.896226 | GACGGAGGGAGTATATGGGC | 59.104 | 60.000 | 0.00 | 0.00 | 0.00 | 5.36 |
5091 | 7611 | 1.558233 | GGACGGAGGGAGTATATGGG | 58.442 | 60.000 | 0.00 | 0.00 | 0.00 | 4.00 |
5092 | 7612 | 1.203137 | TGGGACGGAGGGAGTATATGG | 60.203 | 57.143 | 0.00 | 0.00 | 0.00 | 2.74 |
5094 | 7614 | 3.339713 | TTTGGGACGGAGGGAGTATAT | 57.660 | 47.619 | 0.00 | 0.00 | 0.00 | 0.86 |
5095 | 7615 | 2.852714 | TTTGGGACGGAGGGAGTATA | 57.147 | 50.000 | 0.00 | 0.00 | 0.00 | 1.47 |
5097 | 7617 | 1.732117 | TTTTTGGGACGGAGGGAGTA | 58.268 | 50.000 | 0.00 | 0.00 | 0.00 | 2.59 |
5098 | 7618 | 1.073098 | ATTTTTGGGACGGAGGGAGT | 58.927 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
5099 | 7619 | 3.279434 | CTTATTTTTGGGACGGAGGGAG | 58.721 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
5100 | 7620 | 2.619590 | GCTTATTTTTGGGACGGAGGGA | 60.620 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
5101 | 7621 | 1.749063 | GCTTATTTTTGGGACGGAGGG | 59.251 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
5102 | 7622 | 1.400494 | CGCTTATTTTTGGGACGGAGG | 59.600 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
5103 | 7623 | 2.081462 | ACGCTTATTTTTGGGACGGAG | 58.919 | 47.619 | 0.00 | 0.00 | 0.00 | 4.63 |
5104 | 7624 | 2.078392 | GACGCTTATTTTTGGGACGGA | 58.922 | 47.619 | 0.00 | 0.00 | 0.00 | 4.69 |
5105 | 7625 | 1.807742 | TGACGCTTATTTTTGGGACGG | 59.192 | 47.619 | 0.00 | 0.00 | 0.00 | 4.79 |
5107 | 7627 | 2.481185 | TCGTGACGCTTATTTTTGGGAC | 59.519 | 45.455 | 0.00 | 0.00 | 0.00 | 4.46 |
5108 | 7628 | 2.481185 | GTCGTGACGCTTATTTTTGGGA | 59.519 | 45.455 | 0.00 | 0.00 | 0.00 | 4.37 |
5109 | 7629 | 2.482721 | AGTCGTGACGCTTATTTTTGGG | 59.517 | 45.455 | 0.00 | 0.00 | 36.20 | 4.12 |
5110 | 7630 | 3.806316 | AGTCGTGACGCTTATTTTTGG | 57.194 | 42.857 | 0.00 | 0.00 | 36.20 | 3.28 |
5112 | 7632 | 6.963049 | ATCTTAGTCGTGACGCTTATTTTT | 57.037 | 33.333 | 0.00 | 0.00 | 36.20 | 1.94 |
5113 | 7633 | 7.478322 | TCTATCTTAGTCGTGACGCTTATTTT | 58.522 | 34.615 | 0.00 | 0.00 | 36.20 | 1.82 |
5114 | 7634 | 7.024340 | TCTATCTTAGTCGTGACGCTTATTT | 57.976 | 36.000 | 0.00 | 0.00 | 36.20 | 1.40 |
5115 | 7635 | 6.615264 | TCTATCTTAGTCGTGACGCTTATT | 57.385 | 37.500 | 0.00 | 0.00 | 36.20 | 1.40 |
5116 | 7636 | 6.804770 | ATCTATCTTAGTCGTGACGCTTAT | 57.195 | 37.500 | 0.00 | 0.00 | 36.20 | 1.73 |
5118 | 7638 | 5.334260 | GCTATCTATCTTAGTCGTGACGCTT | 60.334 | 44.000 | 0.00 | 0.00 | 36.20 | 4.68 |
5119 | 7639 | 4.152759 | GCTATCTATCTTAGTCGTGACGCT | 59.847 | 45.833 | 0.00 | 3.47 | 36.20 | 5.07 |
5120 | 7640 | 4.152759 | AGCTATCTATCTTAGTCGTGACGC | 59.847 | 45.833 | 0.00 | 0.00 | 36.20 | 5.19 |
5121 | 7641 | 5.177881 | ACAGCTATCTATCTTAGTCGTGACG | 59.822 | 44.000 | 0.00 | 0.00 | 36.20 | 4.35 |
5123 | 7643 | 6.289064 | TGACAGCTATCTATCTTAGTCGTGA | 58.711 | 40.000 | 0.00 | 0.00 | 0.00 | 4.35 |
5124 | 7644 | 6.546972 | TGACAGCTATCTATCTTAGTCGTG | 57.453 | 41.667 | 0.00 | 0.00 | 0.00 | 4.35 |
5134 | 7654 | 8.715998 | CGCTTTTGATAATTGACAGCTATCTAT | 58.284 | 33.333 | 0.00 | 0.00 | 0.00 | 1.98 |
5135 | 7655 | 7.710907 | ACGCTTTTGATAATTGACAGCTATCTA | 59.289 | 33.333 | 0.00 | 0.00 | 0.00 | 1.98 |
5136 | 7656 | 6.540189 | ACGCTTTTGATAATTGACAGCTATCT | 59.460 | 34.615 | 0.00 | 0.00 | 0.00 | 1.98 |
5137 | 7657 | 6.719365 | ACGCTTTTGATAATTGACAGCTATC | 58.281 | 36.000 | 0.00 | 0.00 | 0.00 | 2.08 |
5138 | 7658 | 6.683974 | ACGCTTTTGATAATTGACAGCTAT | 57.316 | 33.333 | 0.00 | 0.00 | 0.00 | 2.97 |
5139 | 7659 | 6.314018 | CAACGCTTTTGATAATTGACAGCTA | 58.686 | 36.000 | 0.00 | 0.00 | 0.00 | 3.32 |
5142 | 7662 | 4.029418 | CGCAACGCTTTTGATAATTGACAG | 59.971 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
5143 | 7663 | 3.911365 | CGCAACGCTTTTGATAATTGACA | 59.089 | 39.130 | 0.00 | 0.00 | 0.00 | 3.58 |
5144 | 7664 | 3.300590 | CCGCAACGCTTTTGATAATTGAC | 59.699 | 43.478 | 0.00 | 0.00 | 0.00 | 3.18 |
5145 | 7665 | 3.497118 | CCGCAACGCTTTTGATAATTGA | 58.503 | 40.909 | 0.00 | 0.00 | 0.00 | 2.57 |
5148 | 7668 | 1.816224 | ACCCGCAACGCTTTTGATAAT | 59.184 | 42.857 | 0.00 | 0.00 | 0.00 | 1.28 |
5150 | 7670 | 0.800012 | GACCCGCAACGCTTTTGATA | 59.200 | 50.000 | 0.00 | 0.00 | 0.00 | 2.15 |
5151 | 7671 | 1.579429 | GACCCGCAACGCTTTTGAT | 59.421 | 52.632 | 0.00 | 0.00 | 0.00 | 2.57 |
5154 | 7674 | 3.656045 | CCGACCCGCAACGCTTTT | 61.656 | 61.111 | 0.00 | 0.00 | 0.00 | 2.27 |
5159 | 7679 | 2.744709 | AAATCCCGACCCGCAACG | 60.745 | 61.111 | 0.00 | 0.00 | 0.00 | 4.10 |
5160 | 7680 | 2.874751 | CAAATCCCGACCCGCAAC | 59.125 | 61.111 | 0.00 | 0.00 | 0.00 | 4.17 |
5164 | 7684 | 3.131478 | GTGGCAAATCCCGACCCG | 61.131 | 66.667 | 0.00 | 0.00 | 0.00 | 5.28 |
5165 | 7685 | 3.131478 | CGTGGCAAATCCCGACCC | 61.131 | 66.667 | 0.00 | 0.00 | 32.51 | 4.46 |
5166 | 7686 | 2.046700 | TCGTGGCAAATCCCGACC | 60.047 | 61.111 | 0.00 | 0.00 | 34.25 | 4.79 |
5168 | 7688 | 0.609151 | TTAGTCGTGGCAAATCCCGA | 59.391 | 50.000 | 0.00 | 0.00 | 35.93 | 5.14 |
5169 | 7689 | 1.006832 | CTTAGTCGTGGCAAATCCCG | 58.993 | 55.000 | 0.00 | 0.00 | 0.00 | 5.14 |
5170 | 7690 | 1.737793 | CACTTAGTCGTGGCAAATCCC | 59.262 | 52.381 | 0.00 | 0.00 | 0.00 | 3.85 |
5179 | 7699 | 4.045104 | GCATACATCTCCACTTAGTCGTG | 58.955 | 47.826 | 0.00 | 0.00 | 34.71 | 4.35 |
5180 | 7700 | 3.699538 | TGCATACATCTCCACTTAGTCGT | 59.300 | 43.478 | 0.00 | 0.00 | 0.00 | 4.34 |
5181 | 7701 | 4.307443 | TGCATACATCTCCACTTAGTCG | 57.693 | 45.455 | 0.00 | 0.00 | 0.00 | 4.18 |
5182 | 7702 | 8.662781 | TTTATTGCATACATCTCCACTTAGTC | 57.337 | 34.615 | 0.00 | 0.00 | 0.00 | 2.59 |
5183 | 7703 | 9.632638 | ATTTTATTGCATACATCTCCACTTAGT | 57.367 | 29.630 | 0.00 | 0.00 | 0.00 | 2.24 |
5210 | 7730 | 8.936864 | CACTCATTCCGTTTCTACTCTTTATTT | 58.063 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
5217 | 7875 | 3.851098 | AGCACTCATTCCGTTTCTACTC | 58.149 | 45.455 | 0.00 | 0.00 | 0.00 | 2.59 |
5219 | 7877 | 5.179555 | AGAAAAGCACTCATTCCGTTTCTAC | 59.820 | 40.000 | 0.00 | 0.00 | 36.19 | 2.59 |
5220 | 7878 | 5.305585 | AGAAAAGCACTCATTCCGTTTCTA | 58.694 | 37.500 | 0.00 | 0.00 | 36.19 | 2.10 |
5222 | 7880 | 4.489679 | AGAAAAGCACTCATTCCGTTTC | 57.510 | 40.909 | 0.00 | 0.00 | 0.00 | 2.78 |
5223 | 7881 | 5.531287 | AGTTAGAAAAGCACTCATTCCGTTT | 59.469 | 36.000 | 0.00 | 0.00 | 0.00 | 3.60 |
5225 | 7883 | 4.642429 | AGTTAGAAAAGCACTCATTCCGT | 58.358 | 39.130 | 0.00 | 0.00 | 0.00 | 4.69 |
5226 | 7884 | 5.613358 | AAGTTAGAAAAGCACTCATTCCG | 57.387 | 39.130 | 0.00 | 0.00 | 0.00 | 4.30 |
5234 | 7892 | 9.110502 | ACTGCCTAATATAAGTTAGAAAAGCAC | 57.889 | 33.333 | 0.00 | 0.00 | 34.34 | 4.40 |
5235 | 7893 | 9.681062 | AACTGCCTAATATAAGTTAGAAAAGCA | 57.319 | 29.630 | 0.00 | 0.00 | 34.34 | 3.91 |
5254 | 7912 | 8.663209 | AGTATCATCTGAATATCTAACTGCCT | 57.337 | 34.615 | 0.00 | 0.00 | 0.00 | 4.75 |
5255 | 7913 | 8.526978 | TGAGTATCATCTGAATATCTAACTGCC | 58.473 | 37.037 | 0.00 | 0.00 | 42.56 | 4.85 |
5283 | 7941 | 0.107508 | TTCCCTCAGCAGCACATAGC | 60.108 | 55.000 | 0.00 | 0.00 | 46.19 | 2.97 |
5285 | 7943 | 0.983467 | TGTTCCCTCAGCAGCACATA | 59.017 | 50.000 | 0.00 | 0.00 | 0.00 | 2.29 |
5286 | 7944 | 0.111061 | TTGTTCCCTCAGCAGCACAT | 59.889 | 50.000 | 0.00 | 0.00 | 0.00 | 3.21 |
5287 | 7945 | 0.106769 | TTTGTTCCCTCAGCAGCACA | 60.107 | 50.000 | 0.00 | 0.00 | 0.00 | 4.57 |
5288 | 7946 | 0.595095 | CTTTGTTCCCTCAGCAGCAC | 59.405 | 55.000 | 0.00 | 0.00 | 0.00 | 4.40 |
5290 | 7948 | 0.877743 | GTCTTTGTTCCCTCAGCAGC | 59.122 | 55.000 | 0.00 | 0.00 | 0.00 | 5.25 |
5291 | 7949 | 1.072965 | AGGTCTTTGTTCCCTCAGCAG | 59.927 | 52.381 | 0.00 | 0.00 | 0.00 | 4.24 |
5292 | 7950 | 1.140312 | AGGTCTTTGTTCCCTCAGCA | 58.860 | 50.000 | 0.00 | 0.00 | 0.00 | 4.41 |
5293 | 7951 | 1.882623 | CAAGGTCTTTGTTCCCTCAGC | 59.117 | 52.381 | 0.00 | 0.00 | 31.92 | 4.26 |
5319 | 8059 | 5.094387 | TGGTCCATTCTCTCCTTTTCTACT | 58.906 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
5322 | 8062 | 4.171234 | TCTGGTCCATTCTCTCCTTTTCT | 58.829 | 43.478 | 0.00 | 0.00 | 0.00 | 2.52 |
5325 | 8065 | 5.284582 | ACTATCTGGTCCATTCTCTCCTTT | 58.715 | 41.667 | 0.00 | 0.00 | 0.00 | 3.11 |
5330 | 8070 | 6.385176 | TGAAATGACTATCTGGTCCATTCTCT | 59.615 | 38.462 | 0.00 | 0.00 | 35.54 | 3.10 |
5333 | 8073 | 9.512588 | AATATGAAATGACTATCTGGTCCATTC | 57.487 | 33.333 | 0.00 | 0.00 | 35.54 | 2.67 |
5366 | 8133 | 9.513906 | TGGAAATTATGAATGCGGATTAGAATA | 57.486 | 29.630 | 0.71 | 0.00 | 0.00 | 1.75 |
5367 | 8134 | 8.408043 | TGGAAATTATGAATGCGGATTAGAAT | 57.592 | 30.769 | 0.71 | 0.00 | 0.00 | 2.40 |
5369 | 8136 | 7.665145 | TCATGGAAATTATGAATGCGGATTAGA | 59.335 | 33.333 | 0.71 | 0.00 | 31.98 | 2.10 |
5373 | 8140 | 6.845758 | ATCATGGAAATTATGAATGCGGAT | 57.154 | 33.333 | 0.00 | 0.00 | 38.01 | 4.18 |
5405 | 8268 | 1.156736 | CGCGACATTGATAATCCCCC | 58.843 | 55.000 | 0.00 | 0.00 | 0.00 | 5.40 |
5406 | 8269 | 1.156736 | CCGCGACATTGATAATCCCC | 58.843 | 55.000 | 8.23 | 0.00 | 0.00 | 4.81 |
5407 | 8270 | 0.517316 | GCCGCGACATTGATAATCCC | 59.483 | 55.000 | 8.23 | 0.00 | 0.00 | 3.85 |
5409 | 8272 | 2.092838 | GCTAGCCGCGACATTGATAATC | 59.907 | 50.000 | 8.23 | 0.00 | 0.00 | 1.75 |
5411 | 8274 | 1.068588 | AGCTAGCCGCGACATTGATAA | 59.931 | 47.619 | 12.13 | 0.00 | 45.59 | 1.75 |
5412 | 8275 | 0.673985 | AGCTAGCCGCGACATTGATA | 59.326 | 50.000 | 12.13 | 0.00 | 45.59 | 2.15 |
5413 | 8276 | 0.877649 | CAGCTAGCCGCGACATTGAT | 60.878 | 55.000 | 12.13 | 0.00 | 45.59 | 2.57 |
5414 | 8277 | 1.519234 | CAGCTAGCCGCGACATTGA | 60.519 | 57.895 | 12.13 | 0.00 | 45.59 | 2.57 |
5415 | 8278 | 1.083806 | TTCAGCTAGCCGCGACATTG | 61.084 | 55.000 | 12.13 | 0.00 | 45.59 | 2.82 |
5416 | 8279 | 0.179073 | ATTCAGCTAGCCGCGACATT | 60.179 | 50.000 | 12.13 | 0.00 | 45.59 | 2.71 |
5418 | 8281 | 0.391130 | AAATTCAGCTAGCCGCGACA | 60.391 | 50.000 | 12.13 | 0.00 | 45.59 | 4.35 |
5419 | 8282 | 0.727398 | AAAATTCAGCTAGCCGCGAC | 59.273 | 50.000 | 12.13 | 0.00 | 45.59 | 5.19 |
5420 | 8283 | 0.726827 | CAAAATTCAGCTAGCCGCGA | 59.273 | 50.000 | 12.13 | 2.74 | 45.59 | 5.87 |
5422 | 8285 | 0.526310 | GGCAAAATTCAGCTAGCCGC | 60.526 | 55.000 | 12.13 | 1.48 | 39.57 | 6.53 |
5423 | 8286 | 0.810648 | TGGCAAAATTCAGCTAGCCG | 59.189 | 50.000 | 12.13 | 0.00 | 44.83 | 5.52 |
5424 | 8287 | 2.692041 | AGATGGCAAAATTCAGCTAGCC | 59.308 | 45.455 | 12.13 | 0.00 | 42.32 | 3.93 |
5425 | 8288 | 5.702349 | ATAGATGGCAAAATTCAGCTAGC | 57.298 | 39.130 | 6.62 | 6.62 | 35.71 | 3.42 |
5426 | 8289 | 6.429078 | TGCTATAGATGGCAAAATTCAGCTAG | 59.571 | 38.462 | 3.21 | 0.00 | 41.45 | 3.42 |
5427 | 8290 | 6.298361 | TGCTATAGATGGCAAAATTCAGCTA | 58.702 | 36.000 | 3.21 | 0.00 | 41.45 | 3.32 |
5428 | 8291 | 5.135383 | TGCTATAGATGGCAAAATTCAGCT | 58.865 | 37.500 | 3.21 | 0.00 | 41.45 | 4.24 |
5429 | 8292 | 5.240183 | TCTGCTATAGATGGCAAAATTCAGC | 59.760 | 40.000 | 3.21 | 0.00 | 43.77 | 4.26 |
5441 | 10096 | 7.392418 | TGGGAATCAAGATTCTGCTATAGATG | 58.608 | 38.462 | 19.04 | 0.00 | 44.90 | 2.90 |
5445 | 10100 | 7.320384 | TCATGGGAATCAAGATTCTGCTATA | 57.680 | 36.000 | 19.04 | 2.78 | 44.90 | 1.31 |
5448 | 10103 | 4.515028 | TCATGGGAATCAAGATTCTGCT | 57.485 | 40.909 | 19.04 | 4.82 | 44.90 | 4.24 |
5449 | 10104 | 5.786264 | AATCATGGGAATCAAGATTCTGC | 57.214 | 39.130 | 19.04 | 6.63 | 44.90 | 4.26 |
5453 | 10108 | 6.774656 | GGTACTGAATCATGGGAATCAAGATT | 59.225 | 38.462 | 0.00 | 0.00 | 43.79 | 2.40 |
5454 | 10109 | 6.126390 | TGGTACTGAATCATGGGAATCAAGAT | 60.126 | 38.462 | 0.00 | 0.00 | 35.56 | 2.40 |
5456 | 10111 | 5.439721 | TGGTACTGAATCATGGGAATCAAG | 58.560 | 41.667 | 0.00 | 0.00 | 32.75 | 3.02 |
5463 | 10317 | 6.461927 | CCATTGATTTGGTACTGAATCATGGG | 60.462 | 42.308 | 23.22 | 20.47 | 39.70 | 4.00 |
5477 | 10331 | 6.813152 | GGTTTCAACTCATACCATTGATTTGG | 59.187 | 38.462 | 5.17 | 0.00 | 42.82 | 3.28 |
5486 | 10340 | 2.554344 | GGGCAGGTTTCAACTCATACCA | 60.554 | 50.000 | 0.00 | 0.00 | 33.02 | 3.25 |
5488 | 10342 | 2.749621 | CTGGGCAGGTTTCAACTCATAC | 59.250 | 50.000 | 0.00 | 0.00 | 0.00 | 2.39 |
5508 | 10362 | 4.095400 | ATCACCCCGCCTCCTCCT | 62.095 | 66.667 | 0.00 | 0.00 | 0.00 | 3.69 |
5516 | 10370 | 2.158871 | TGTATGGTAAAGATCACCCCGC | 60.159 | 50.000 | 0.00 | 0.00 | 34.99 | 6.13 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.