Multiple sequence alignment - TraesCS2B01G012000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G012000 chr2B 100.000 3671 0 0 1 3671 6177582 6181252 0.000000e+00 6780.0
1 TraesCS2B01G012000 chr2B 83.180 1409 211 17 1136 2537 46677673 46679062 0.000000e+00 1266.0
2 TraesCS2B01G012000 chr2D 90.296 1927 95 48 785 2661 5266929 5268813 0.000000e+00 2438.0
3 TraesCS2B01G012000 chr2D 82.979 1410 212 21 1136 2537 28915481 28914092 0.000000e+00 1249.0
4 TraesCS2B01G012000 chr2D 82.420 1405 229 13 1136 2537 28965054 28966443 0.000000e+00 1210.0
5 TraesCS2B01G012000 chr2D 91.273 699 37 10 2987 3671 5279622 5280310 0.000000e+00 931.0
6 TraesCS2B01G012000 chr2D 76.783 1374 278 26 1134 2497 109554281 109555623 0.000000e+00 732.0
7 TraesCS2B01G012000 chr2D 75.342 1314 291 21 1139 2446 109030766 109032052 5.250000e-168 601.0
8 TraesCS2B01G012000 chr2D 79.693 522 55 25 2 501 5266415 5266907 2.730000e-86 329.0
9 TraesCS2B01G012000 chr2A 91.778 1642 105 14 1136 2749 3816526 3818165 0.000000e+00 2257.0
10 TraesCS2B01G012000 chr2A 89.789 901 60 19 2789 3671 3833590 3834476 0.000000e+00 1125.0
11 TraesCS2B01G012000 chr2A 86.453 967 88 22 1719 2660 3832551 3833499 0.000000e+00 1020.0
12 TraesCS2B01G012000 chr2A 90.196 408 28 2 1 397 3814765 3815171 4.200000e-144 521.0
13 TraesCS2B01G012000 chr2A 82.387 511 57 23 5 501 3815689 3816180 7.330000e-112 414.0
14 TraesCS2B01G012000 chr2A 82.353 187 13 12 785 957 3816202 3816382 1.060000e-30 145.0
15 TraesCS2B01G012000 chr2A 84.722 72 10 1 687 757 668277107 668277178 1.830000e-08 71.3
16 TraesCS2B01G012000 chr7A 77.856 1418 276 29 1136 2538 51090586 51091980 0.000000e+00 845.0
17 TraesCS2B01G012000 chr7A 77.417 1417 284 28 1136 2538 51259215 51260609 0.000000e+00 811.0
18 TraesCS2B01G012000 chr7A 76.831 1420 266 41 1136 2538 51141442 51142815 0.000000e+00 741.0
19 TraesCS2B01G012000 chr7A 76.603 1419 269 42 1136 2538 51201421 51202792 0.000000e+00 723.0
20 TraesCS2B01G012000 chrUn 81.085 719 119 14 1117 1831 370635977 370635272 3.200000e-155 558.0
21 TraesCS2B01G012000 chrUn 79.947 748 138 10 1297 2041 376672057 376671319 1.160000e-149 540.0
22 TraesCS2B01G012000 chrUn 86.111 180 20 5 1117 1295 385972538 385972713 4.840000e-44 189.0
23 TraesCS2B01G012000 chr6A 76.555 209 41 6 556 757 593006385 593006178 1.390000e-19 108.0
24 TraesCS2B01G012000 chr7D 76.500 200 33 13 556 743 606556236 606556039 3.020000e-16 97.1
25 TraesCS2B01G012000 chr5B 88.406 69 5 3 697 762 608213821 608213753 3.040000e-11 80.5
26 TraesCS2B01G012000 chr3A 87.692 65 7 1 694 757 14764320 14764256 1.410000e-09 75.0
27 TraesCS2B01G012000 chr4B 83.929 56 8 1 703 757 338433463 338433518 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G012000 chr2B 6177582 6181252 3670 False 6780.00 6780 100.0000 1 3671 1 chr2B.!!$F1 3670
1 TraesCS2B01G012000 chr2B 46677673 46679062 1389 False 1266.00 1266 83.1800 1136 2537 1 chr2B.!!$F2 1401
2 TraesCS2B01G012000 chr2D 5266415 5268813 2398 False 1383.50 2438 84.9945 2 2661 2 chr2D.!!$F5 2659
3 TraesCS2B01G012000 chr2D 28914092 28915481 1389 True 1249.00 1249 82.9790 1136 2537 1 chr2D.!!$R1 1401
4 TraesCS2B01G012000 chr2D 28965054 28966443 1389 False 1210.00 1210 82.4200 1136 2537 1 chr2D.!!$F2 1401
5 TraesCS2B01G012000 chr2D 5279622 5280310 688 False 931.00 931 91.2730 2987 3671 1 chr2D.!!$F1 684
6 TraesCS2B01G012000 chr2D 109554281 109555623 1342 False 732.00 732 76.7830 1134 2497 1 chr2D.!!$F4 1363
7 TraesCS2B01G012000 chr2D 109030766 109032052 1286 False 601.00 601 75.3420 1139 2446 1 chr2D.!!$F3 1307
8 TraesCS2B01G012000 chr2A 3832551 3834476 1925 False 1072.50 1125 88.1210 1719 3671 2 chr2A.!!$F3 1952
9 TraesCS2B01G012000 chr2A 3814765 3818165 3400 False 834.25 2257 86.6785 1 2749 4 chr2A.!!$F2 2748
10 TraesCS2B01G012000 chr7A 51090586 51091980 1394 False 845.00 845 77.8560 1136 2538 1 chr7A.!!$F1 1402
11 TraesCS2B01G012000 chr7A 51259215 51260609 1394 False 811.00 811 77.4170 1136 2538 1 chr7A.!!$F4 1402
12 TraesCS2B01G012000 chr7A 51141442 51142815 1373 False 741.00 741 76.8310 1136 2538 1 chr7A.!!$F2 1402
13 TraesCS2B01G012000 chr7A 51201421 51202792 1371 False 723.00 723 76.6030 1136 2538 1 chr7A.!!$F3 1402
14 TraesCS2B01G012000 chrUn 370635272 370635977 705 True 558.00 558 81.0850 1117 1831 1 chrUn.!!$R1 714
15 TraesCS2B01G012000 chrUn 376671319 376672057 738 True 540.00 540 79.9470 1297 2041 1 chrUn.!!$R2 744

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
632 1573 0.323302 TGGCAATTCTAGTGACGGCA 59.677 50.0 0.00 0.0 0.0 5.69 F
1717 2691 0.186630 ACCGGGGCTTTTTACAGGTT 59.813 50.0 6.32 0.0 0.0 3.50 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2137 3120 0.768221 TCACCACCAGCCCTCTTTCT 60.768 55.0 0.00 0.0 0.0 2.52 R
2878 3892 0.037590 TTTAGCAGTGCCCGGACATT 59.962 50.0 12.58 0.0 0.0 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
100 101 0.909610 TGAAAGGTGGAGGGCGAGAT 60.910 55.000 0.00 0.00 0.00 2.75
116 117 2.611292 CGAGATGGCAATTTGAGAGTCC 59.389 50.000 0.00 0.00 0.00 3.85
118 119 2.309755 AGATGGCAATTTGAGAGTCCCA 59.690 45.455 0.00 0.00 0.00 4.37
168 180 2.355837 TTCACTCCGTCGCAGTGC 60.356 61.111 11.59 4.58 41.04 4.40
188 200 0.658897 CCGCAACAACCAAACGTACT 59.341 50.000 0.00 0.00 0.00 2.73
200 212 1.978542 AACGTACTGACATGTCTCGC 58.021 50.000 25.55 12.43 0.00 5.03
219 231 2.669113 CGCCTCATTCAACACAATGTGG 60.669 50.000 18.37 9.08 44.85 4.17
231 243 4.081406 ACACAATGTGGTGCATACAGAAT 58.919 39.130 18.37 0.00 42.55 2.40
246 258 2.171448 ACAGAATGGCAGGACTACATCC 59.829 50.000 0.00 0.00 45.49 3.51
326 1263 2.644676 TCACATTGTCAAACGTTGGGA 58.355 42.857 0.00 0.00 0.00 4.37
354 1295 5.684704 TCTCCATCTGGGTTTATCAATCAC 58.315 41.667 0.00 0.00 38.11 3.06
373 1314 1.764134 ACACACGGGTTTAGGTCTTCA 59.236 47.619 0.00 0.00 0.00 3.02
377 1318 4.070009 ACACGGGTTTAGGTCTTCATTTC 58.930 43.478 0.00 0.00 0.00 2.17
385 1326 6.183360 GGTTTAGGTCTTCATTTCGACTAACG 60.183 42.308 0.00 0.00 44.09 3.18
386 1327 3.846360 AGGTCTTCATTTCGACTAACGG 58.154 45.455 0.00 0.00 42.82 4.44
397 1338 1.403647 CGACTAACGGAACATGCCTCA 60.404 52.381 0.00 0.00 38.46 3.86
399 1340 2.609459 GACTAACGGAACATGCCTCATG 59.391 50.000 5.35 5.35 46.18 3.07
401 1342 7.893118 CGACTAACGGAACATGCCTCATGTA 62.893 48.000 12.20 0.00 44.68 2.29
411 1352 5.833406 CATGCCTCATGTATGGTACAAAA 57.167 39.130 0.00 0.00 42.76 2.44
452 1393 6.668541 TTTTCATTGAATGCGTTTTTCCAA 57.331 29.167 0.00 0.00 0.00 3.53
453 1394 6.668541 TTTCATTGAATGCGTTTTTCCAAA 57.331 29.167 0.00 0.00 0.00 3.28
454 1395 5.649602 TCATTGAATGCGTTTTTCCAAAC 57.350 34.783 0.00 0.00 39.24 2.93
455 1396 5.111989 TCATTGAATGCGTTTTTCCAAACA 58.888 33.333 0.00 0.00 42.30 2.83
456 1397 5.757320 TCATTGAATGCGTTTTTCCAAACAT 59.243 32.000 0.00 0.00 42.30 2.71
458 1399 6.761731 TTGAATGCGTTTTTCCAAACATAG 57.238 33.333 0.00 0.00 42.30 2.23
459 1400 5.837437 TGAATGCGTTTTTCCAAACATAGT 58.163 33.333 0.00 0.00 42.30 2.12
460 1401 6.276847 TGAATGCGTTTTTCCAAACATAGTT 58.723 32.000 0.00 0.00 42.30 2.24
461 1402 6.419413 TGAATGCGTTTTTCCAAACATAGTTC 59.581 34.615 0.00 0.00 42.30 3.01
464 1405 7.028926 TGCGTTTTTCCAAACATAGTTCTAA 57.971 32.000 0.00 0.00 42.30 2.10
467 1408 8.974408 GCGTTTTTCCAAACATAGTTCTAAAAT 58.026 29.630 0.00 0.00 42.30 1.82
514 1455 9.671279 AAATTAAAACATCTCAAATTCCATCCC 57.329 29.630 0.00 0.00 0.00 3.85
515 1456 7.789202 TTAAAACATCTCAAATTCCATCCCA 57.211 32.000 0.00 0.00 0.00 4.37
516 1457 6.684897 AAAACATCTCAAATTCCATCCCAA 57.315 33.333 0.00 0.00 0.00 4.12
517 1458 5.665916 AACATCTCAAATTCCATCCCAAC 57.334 39.130 0.00 0.00 0.00 3.77
518 1459 4.939255 ACATCTCAAATTCCATCCCAACT 58.061 39.130 0.00 0.00 0.00 3.16
519 1460 6.078456 ACATCTCAAATTCCATCCCAACTA 57.922 37.500 0.00 0.00 0.00 2.24
520 1461 6.493166 ACATCTCAAATTCCATCCCAACTAA 58.507 36.000 0.00 0.00 0.00 2.24
521 1462 6.378280 ACATCTCAAATTCCATCCCAACTAAC 59.622 38.462 0.00 0.00 0.00 2.34
522 1463 5.886609 TCTCAAATTCCATCCCAACTAACA 58.113 37.500 0.00 0.00 0.00 2.41
523 1464 6.493166 TCTCAAATTCCATCCCAACTAACAT 58.507 36.000 0.00 0.00 0.00 2.71
529 1470 1.676006 CATCCCAACTAACATTCCGGC 59.324 52.381 0.00 0.00 0.00 6.13
557 1498 2.533266 GAGCATCCAATTTCTTTGCGG 58.467 47.619 0.00 0.00 38.32 5.69
558 1499 2.164219 GAGCATCCAATTTCTTTGCGGA 59.836 45.455 0.00 0.00 38.32 5.54
559 1500 2.562298 AGCATCCAATTTCTTTGCGGAA 59.438 40.909 0.00 0.00 38.32 4.30
560 1501 3.006752 AGCATCCAATTTCTTTGCGGAAA 59.993 39.130 1.05 1.05 39.16 3.13
561 1502 3.934579 GCATCCAATTTCTTTGCGGAAAT 59.065 39.130 1.45 0.00 44.66 2.17
562 1503 4.201744 GCATCCAATTTCTTTGCGGAAATG 60.202 41.667 1.45 0.00 42.77 2.32
563 1504 4.862902 TCCAATTTCTTTGCGGAAATGA 57.137 36.364 1.45 0.03 42.77 2.57
564 1505 5.404466 TCCAATTTCTTTGCGGAAATGAT 57.596 34.783 1.45 0.00 42.77 2.45
565 1506 6.522625 TCCAATTTCTTTGCGGAAATGATA 57.477 33.333 1.45 0.00 42.77 2.15
566 1507 6.929625 TCCAATTTCTTTGCGGAAATGATAA 58.070 32.000 1.45 0.00 42.77 1.75
567 1508 7.035004 TCCAATTTCTTTGCGGAAATGATAAG 58.965 34.615 1.45 0.00 42.77 1.73
568 1509 6.813152 CCAATTTCTTTGCGGAAATGATAAGT 59.187 34.615 1.45 0.00 42.77 2.24
569 1510 7.973388 CCAATTTCTTTGCGGAAATGATAAGTA 59.027 33.333 1.45 0.00 42.77 2.24
570 1511 8.798153 CAATTTCTTTGCGGAAATGATAAGTAC 58.202 33.333 1.45 0.00 42.77 2.73
571 1512 6.431198 TTCTTTGCGGAAATGATAAGTACC 57.569 37.500 1.45 0.00 0.00 3.34
572 1513 5.741011 TCTTTGCGGAAATGATAAGTACCT 58.259 37.500 1.45 0.00 0.00 3.08
573 1514 5.584649 TCTTTGCGGAAATGATAAGTACCTG 59.415 40.000 1.45 0.00 0.00 4.00
574 1515 4.746535 TGCGGAAATGATAAGTACCTGA 57.253 40.909 0.00 0.00 0.00 3.86
575 1516 4.439057 TGCGGAAATGATAAGTACCTGAC 58.561 43.478 0.00 0.00 0.00 3.51
576 1517 3.489785 GCGGAAATGATAAGTACCTGACG 59.510 47.826 0.00 0.00 0.00 4.35
577 1518 4.679662 CGGAAATGATAAGTACCTGACGT 58.320 43.478 0.00 0.00 0.00 4.34
578 1519 4.738740 CGGAAATGATAAGTACCTGACGTC 59.261 45.833 9.11 9.11 0.00 4.34
579 1520 5.657474 GGAAATGATAAGTACCTGACGTCA 58.343 41.667 18.88 18.88 0.00 4.35
580 1521 5.749109 GGAAATGATAAGTACCTGACGTCAG 59.251 44.000 33.87 33.87 43.40 3.51
588 1529 2.807045 CTGACGTCAGGTGCGAGC 60.807 66.667 33.36 0.00 40.20 5.03
589 1530 3.558099 CTGACGTCAGGTGCGAGCA 62.558 63.158 33.36 1.79 40.20 4.26
590 1531 3.106407 GACGTCAGGTGCGAGCAC 61.106 66.667 18.94 18.94 45.49 4.40
600 1541 1.887320 GTGCGAGCACATGACAAATC 58.113 50.000 21.73 0.00 45.53 2.17
601 1542 1.197492 GTGCGAGCACATGACAAATCA 59.803 47.619 21.73 0.00 45.53 2.57
603 1544 3.063861 GTGCGAGCACATGACAAATCATA 59.936 43.478 21.73 0.00 44.13 2.15
604 1545 3.063861 TGCGAGCACATGACAAATCATAC 59.936 43.478 0.00 0.00 44.13 2.39
605 1546 3.842439 GCGAGCACATGACAAATCATACG 60.842 47.826 0.00 0.00 44.13 3.06
606 1547 3.306973 CGAGCACATGACAAATCATACGT 59.693 43.478 0.00 0.00 44.13 3.57
607 1548 4.201714 CGAGCACATGACAAATCATACGTT 60.202 41.667 0.00 0.00 44.13 3.99
608 1549 5.005299 CGAGCACATGACAAATCATACGTTA 59.995 40.000 0.00 0.00 44.13 3.18
609 1550 6.292328 CGAGCACATGACAAATCATACGTTAT 60.292 38.462 0.00 0.00 44.13 1.89
610 1551 7.320443 AGCACATGACAAATCATACGTTATT 57.680 32.000 0.00 0.00 44.13 1.40
611 1552 7.761409 AGCACATGACAAATCATACGTTATTT 58.239 30.769 0.00 0.00 44.13 1.40
612 1553 8.888716 AGCACATGACAAATCATACGTTATTTA 58.111 29.630 0.00 0.00 44.13 1.40
613 1554 9.663904 GCACATGACAAATCATACGTTATTTAT 57.336 29.630 0.00 0.00 44.13 1.40
616 1557 9.117145 CATGACAAATCATACGTTATTTATGGC 57.883 33.333 0.00 0.00 44.13 4.40
617 1558 8.214721 TGACAAATCATACGTTATTTATGGCA 57.785 30.769 0.00 0.00 0.00 4.92
618 1559 8.678199 TGACAAATCATACGTTATTTATGGCAA 58.322 29.630 0.00 0.00 0.00 4.52
619 1560 9.677567 GACAAATCATACGTTATTTATGGCAAT 57.322 29.630 0.00 0.00 0.00 3.56
625 1566 9.772973 TCATACGTTATTTATGGCAATTCTAGT 57.227 29.630 0.00 0.00 0.00 2.57
626 1567 9.811655 CATACGTTATTTATGGCAATTCTAGTG 57.188 33.333 0.00 0.00 0.00 2.74
627 1568 9.772973 ATACGTTATTTATGGCAATTCTAGTGA 57.227 29.630 0.00 0.00 0.00 3.41
628 1569 7.916552 ACGTTATTTATGGCAATTCTAGTGAC 58.083 34.615 0.00 0.00 0.00 3.67
629 1570 7.063456 CGTTATTTATGGCAATTCTAGTGACG 58.937 38.462 0.00 0.00 0.00 4.35
630 1571 7.352739 GTTATTTATGGCAATTCTAGTGACGG 58.647 38.462 0.00 0.00 0.00 4.79
631 1572 1.668419 ATGGCAATTCTAGTGACGGC 58.332 50.000 0.00 0.00 0.00 5.68
632 1573 0.323302 TGGCAATTCTAGTGACGGCA 59.677 50.000 0.00 0.00 0.00 5.69
633 1574 1.271108 TGGCAATTCTAGTGACGGCAA 60.271 47.619 0.00 0.00 0.00 4.52
634 1575 1.398390 GGCAATTCTAGTGACGGCAAG 59.602 52.381 0.00 0.00 0.00 4.01
635 1576 2.076863 GCAATTCTAGTGACGGCAAGT 58.923 47.619 0.00 0.00 0.00 3.16
636 1577 2.484264 GCAATTCTAGTGACGGCAAGTT 59.516 45.455 0.00 0.00 0.00 2.66
637 1578 3.682858 GCAATTCTAGTGACGGCAAGTTA 59.317 43.478 0.00 0.00 0.00 2.24
638 1579 4.201724 GCAATTCTAGTGACGGCAAGTTAG 60.202 45.833 0.00 0.00 0.00 2.34
639 1580 4.803098 ATTCTAGTGACGGCAAGTTAGT 57.197 40.909 0.00 0.00 0.00 2.24
640 1581 4.595762 TTCTAGTGACGGCAAGTTAGTT 57.404 40.909 0.00 0.00 0.00 2.24
641 1582 3.909430 TCTAGTGACGGCAAGTTAGTTG 58.091 45.455 0.00 0.00 39.41 3.16
642 1583 2.902705 AGTGACGGCAAGTTAGTTGA 57.097 45.000 0.00 0.00 38.60 3.18
643 1584 3.402628 AGTGACGGCAAGTTAGTTGAT 57.597 42.857 0.00 0.00 38.60 2.57
644 1585 3.067106 AGTGACGGCAAGTTAGTTGATG 58.933 45.455 0.00 0.00 38.60 3.07
645 1586 1.804151 TGACGGCAAGTTAGTTGATGC 59.196 47.619 3.69 0.00 38.60 3.91
646 1587 1.804151 GACGGCAAGTTAGTTGATGCA 59.196 47.619 3.69 0.00 40.51 3.96
647 1588 1.535462 ACGGCAAGTTAGTTGATGCAC 59.465 47.619 3.69 0.00 40.51 4.57
648 1589 1.535028 CGGCAAGTTAGTTGATGCACA 59.465 47.619 3.69 0.00 40.51 4.57
649 1590 2.665519 CGGCAAGTTAGTTGATGCACAC 60.666 50.000 3.69 0.00 40.51 3.82
650 1591 2.351738 GGCAAGTTAGTTGATGCACACC 60.352 50.000 3.69 0.00 40.51 4.16
651 1592 2.665519 GCAAGTTAGTTGATGCACACCG 60.666 50.000 3.69 0.00 38.60 4.94
652 1593 2.543777 AGTTAGTTGATGCACACCGT 57.456 45.000 0.00 0.00 0.00 4.83
653 1594 3.671008 AGTTAGTTGATGCACACCGTA 57.329 42.857 0.00 0.00 0.00 4.02
654 1595 3.997762 AGTTAGTTGATGCACACCGTAA 58.002 40.909 0.00 0.00 0.00 3.18
655 1596 4.575885 AGTTAGTTGATGCACACCGTAAT 58.424 39.130 0.00 0.00 0.00 1.89
656 1597 5.001232 AGTTAGTTGATGCACACCGTAATT 58.999 37.500 0.00 0.00 0.00 1.40
657 1598 5.472137 AGTTAGTTGATGCACACCGTAATTT 59.528 36.000 0.00 0.00 0.00 1.82
658 1599 4.846779 AGTTGATGCACACCGTAATTTT 57.153 36.364 0.00 0.00 0.00 1.82
659 1600 4.794169 AGTTGATGCACACCGTAATTTTC 58.206 39.130 0.00 0.00 0.00 2.29
660 1601 4.518970 AGTTGATGCACACCGTAATTTTCT 59.481 37.500 0.00 0.00 0.00 2.52
661 1602 4.418013 TGATGCACACCGTAATTTTCTG 57.582 40.909 0.00 0.00 0.00 3.02
662 1603 3.818210 TGATGCACACCGTAATTTTCTGT 59.182 39.130 0.00 0.00 0.00 3.41
663 1604 4.277174 TGATGCACACCGTAATTTTCTGTT 59.723 37.500 0.00 0.00 0.00 3.16
664 1605 3.958704 TGCACACCGTAATTTTCTGTTG 58.041 40.909 0.00 0.00 0.00 3.33
665 1606 3.628032 TGCACACCGTAATTTTCTGTTGA 59.372 39.130 0.00 0.00 0.00 3.18
666 1607 4.096532 TGCACACCGTAATTTTCTGTTGAA 59.903 37.500 0.00 0.00 0.00 2.69
667 1608 5.038033 GCACACCGTAATTTTCTGTTGAAA 58.962 37.500 0.00 0.00 40.08 2.69
683 1624 8.388319 TCTGTTGAAAAATTAACTGAAACACG 57.612 30.769 0.00 0.00 33.65 4.49
684 1625 8.237949 TCTGTTGAAAAATTAACTGAAACACGA 58.762 29.630 0.00 0.00 33.65 4.35
685 1626 8.388319 TGTTGAAAAATTAACTGAAACACGAG 57.612 30.769 0.00 0.00 0.00 4.18
686 1627 8.237949 TGTTGAAAAATTAACTGAAACACGAGA 58.762 29.630 0.00 0.00 0.00 4.04
687 1628 9.233232 GTTGAAAAATTAACTGAAACACGAGAT 57.767 29.630 0.00 0.00 0.00 2.75
688 1629 9.796120 TTGAAAAATTAACTGAAACACGAGATT 57.204 25.926 0.00 0.00 0.00 2.40
689 1630 9.232082 TGAAAAATTAACTGAAACACGAGATTG 57.768 29.630 0.00 0.00 0.00 2.67
690 1631 7.623268 AAAATTAACTGAAACACGAGATTGC 57.377 32.000 0.00 0.00 0.00 3.56
691 1632 6.560253 AATTAACTGAAACACGAGATTGCT 57.440 33.333 0.00 0.00 0.00 3.91
692 1633 7.667043 AATTAACTGAAACACGAGATTGCTA 57.333 32.000 0.00 0.00 0.00 3.49
693 1634 7.849804 ATTAACTGAAACACGAGATTGCTAT 57.150 32.000 0.00 0.00 0.00 2.97
694 1635 5.536554 AACTGAAACACGAGATTGCTATG 57.463 39.130 0.00 0.00 0.00 2.23
695 1636 3.372206 ACTGAAACACGAGATTGCTATGC 59.628 43.478 0.00 0.00 0.00 3.14
696 1637 3.599343 TGAAACACGAGATTGCTATGCT 58.401 40.909 0.00 0.00 0.00 3.79
697 1638 4.002982 TGAAACACGAGATTGCTATGCTT 58.997 39.130 0.00 0.00 0.00 3.91
698 1639 4.142838 TGAAACACGAGATTGCTATGCTTG 60.143 41.667 0.00 0.00 0.00 4.01
699 1640 2.977914 ACACGAGATTGCTATGCTTGT 58.022 42.857 0.00 0.00 0.00 3.16
700 1641 2.932614 ACACGAGATTGCTATGCTTGTC 59.067 45.455 0.00 0.00 0.00 3.18
701 1642 2.931969 CACGAGATTGCTATGCTTGTCA 59.068 45.455 0.00 0.00 0.00 3.58
702 1643 3.371898 CACGAGATTGCTATGCTTGTCAA 59.628 43.478 0.00 0.00 0.00 3.18
703 1644 3.372206 ACGAGATTGCTATGCTTGTCAAC 59.628 43.478 0.00 0.00 0.00 3.18
704 1645 3.620374 CGAGATTGCTATGCTTGTCAACT 59.380 43.478 0.00 0.00 0.00 3.16
705 1646 4.805719 CGAGATTGCTATGCTTGTCAACTA 59.194 41.667 0.00 0.00 0.00 2.24
706 1647 5.291858 CGAGATTGCTATGCTTGTCAACTAA 59.708 40.000 0.00 0.00 0.00 2.24
707 1648 6.183360 CGAGATTGCTATGCTTGTCAACTAAA 60.183 38.462 0.00 0.00 0.00 1.85
708 1649 7.081526 AGATTGCTATGCTTGTCAACTAAAG 57.918 36.000 0.00 0.00 0.00 1.85
709 1650 6.656693 AGATTGCTATGCTTGTCAACTAAAGT 59.343 34.615 0.00 0.00 0.00 2.66
710 1651 6.633500 TTGCTATGCTTGTCAACTAAAGTT 57.367 33.333 0.00 0.00 39.12 2.66
720 1661 1.792006 AACTAAAGTTGTCGCCCTCG 58.208 50.000 0.00 0.00 36.80 4.63
721 1662 0.669625 ACTAAAGTTGTCGCCCTCGC 60.670 55.000 0.00 0.00 35.26 5.03
722 1663 1.359459 CTAAAGTTGTCGCCCTCGCC 61.359 60.000 0.00 0.00 35.26 5.54
723 1664 1.823169 TAAAGTTGTCGCCCTCGCCT 61.823 55.000 0.00 0.00 35.26 5.52
724 1665 3.591254 AAGTTGTCGCCCTCGCCTC 62.591 63.158 0.00 0.00 35.26 4.70
725 1666 4.373116 GTTGTCGCCCTCGCCTCA 62.373 66.667 0.00 0.00 35.26 3.86
726 1667 4.373116 TTGTCGCCCTCGCCTCAC 62.373 66.667 0.00 0.00 35.26 3.51
728 1669 3.138798 GTCGCCCTCGCCTCACTA 61.139 66.667 0.00 0.00 35.26 2.74
729 1670 2.361992 TCGCCCTCGCCTCACTAA 60.362 61.111 0.00 0.00 35.26 2.24
730 1671 1.980232 TCGCCCTCGCCTCACTAAA 60.980 57.895 0.00 0.00 35.26 1.85
731 1672 1.144057 CGCCCTCGCCTCACTAAAT 59.856 57.895 0.00 0.00 0.00 1.40
732 1673 0.462047 CGCCCTCGCCTCACTAAATT 60.462 55.000 0.00 0.00 0.00 1.82
733 1674 1.751437 GCCCTCGCCTCACTAAATTT 58.249 50.000 0.00 0.00 0.00 1.82
734 1675 1.401905 GCCCTCGCCTCACTAAATTTG 59.598 52.381 0.00 0.00 0.00 2.32
735 1676 2.711542 CCCTCGCCTCACTAAATTTGT 58.288 47.619 0.00 0.00 0.00 2.83
736 1677 2.678336 CCCTCGCCTCACTAAATTTGTC 59.322 50.000 0.00 0.00 0.00 3.18
737 1678 3.334691 CCTCGCCTCACTAAATTTGTCA 58.665 45.455 0.00 0.00 0.00 3.58
738 1679 3.941483 CCTCGCCTCACTAAATTTGTCAT 59.059 43.478 0.00 0.00 0.00 3.06
739 1680 5.116180 CCTCGCCTCACTAAATTTGTCATA 58.884 41.667 0.00 0.00 0.00 2.15
740 1681 5.584649 CCTCGCCTCACTAAATTTGTCATAA 59.415 40.000 0.00 0.00 0.00 1.90
741 1682 6.093495 CCTCGCCTCACTAAATTTGTCATAAA 59.907 38.462 0.00 0.00 0.00 1.40
742 1683 7.361713 CCTCGCCTCACTAAATTTGTCATAAAA 60.362 37.037 0.00 0.00 0.00 1.52
743 1684 7.877003 TCGCCTCACTAAATTTGTCATAAAAA 58.123 30.769 0.00 0.00 0.00 1.94
765 1706 7.698836 AAAATGTTTGATTTGCTGTGTACTC 57.301 32.000 0.00 0.00 0.00 2.59
766 1707 4.466567 TGTTTGATTTGCTGTGTACTCG 57.533 40.909 0.00 0.00 0.00 4.18
767 1708 3.249799 TGTTTGATTTGCTGTGTACTCGG 59.750 43.478 0.00 0.00 0.00 4.63
768 1709 2.093306 TGATTTGCTGTGTACTCGGG 57.907 50.000 5.93 0.00 0.00 5.14
769 1710 1.338674 TGATTTGCTGTGTACTCGGGG 60.339 52.381 5.93 0.00 0.00 5.73
770 1711 0.676782 ATTTGCTGTGTACTCGGGGC 60.677 55.000 5.93 3.75 0.00 5.80
771 1712 3.583276 TTGCTGTGTACTCGGGGCG 62.583 63.158 5.93 0.00 0.00 6.13
772 1713 4.065281 GCTGTGTACTCGGGGCGT 62.065 66.667 5.93 0.00 0.00 5.68
773 1714 2.654877 CTGTGTACTCGGGGCGTT 59.345 61.111 0.00 0.00 0.00 4.84
774 1715 1.885157 CTGTGTACTCGGGGCGTTA 59.115 57.895 0.00 0.00 0.00 3.18
775 1716 0.458669 CTGTGTACTCGGGGCGTTAT 59.541 55.000 0.00 0.00 0.00 1.89
776 1717 0.457035 TGTGTACTCGGGGCGTTATC 59.543 55.000 0.00 0.00 0.00 1.75
777 1718 0.593263 GTGTACTCGGGGCGTTATCG 60.593 60.000 0.00 0.00 40.37 2.92
778 1719 1.008079 GTACTCGGGGCGTTATCGG 60.008 63.158 0.00 0.00 37.56 4.18
779 1720 1.152984 TACTCGGGGCGTTATCGGA 60.153 57.895 0.00 0.00 37.56 4.55
780 1721 0.538057 TACTCGGGGCGTTATCGGAT 60.538 55.000 0.00 0.00 37.56 4.18
781 1722 1.366366 CTCGGGGCGTTATCGGATT 59.634 57.895 0.00 0.00 37.56 3.01
782 1723 0.944311 CTCGGGGCGTTATCGGATTG 60.944 60.000 0.00 0.00 37.56 2.67
783 1724 1.227438 CGGGGCGTTATCGGATTGT 60.227 57.895 0.00 0.00 37.56 2.71
784 1725 0.812412 CGGGGCGTTATCGGATTGTT 60.812 55.000 0.00 0.00 37.56 2.83
785 1726 1.385528 GGGGCGTTATCGGATTGTTT 58.614 50.000 0.00 0.00 37.56 2.83
786 1727 1.746787 GGGGCGTTATCGGATTGTTTT 59.253 47.619 0.00 0.00 37.56 2.43
787 1728 2.223409 GGGGCGTTATCGGATTGTTTTC 60.223 50.000 0.00 0.00 37.56 2.29
788 1729 2.681344 GGGCGTTATCGGATTGTTTTCT 59.319 45.455 0.00 0.00 37.56 2.52
789 1730 3.128068 GGGCGTTATCGGATTGTTTTCTT 59.872 43.478 0.00 0.00 37.56 2.52
790 1731 4.380128 GGGCGTTATCGGATTGTTTTCTTT 60.380 41.667 0.00 0.00 37.56 2.52
791 1732 4.557301 GGCGTTATCGGATTGTTTTCTTTG 59.443 41.667 0.00 0.00 37.56 2.77
795 1736 4.582701 ATCGGATTGTTTTCTTTGTGCA 57.417 36.364 0.00 0.00 0.00 4.57
857 1802 0.389817 CACACATGGTCCACGTCGAT 60.390 55.000 0.00 0.00 0.00 3.59
870 1815 1.203994 ACGTCGATCCATCCGTCTTTT 59.796 47.619 0.00 0.00 0.00 2.27
900 1845 4.035909 GGTGTAAACTGTAAAGTGGTGTGG 59.964 45.833 0.00 0.00 0.00 4.17
957 1910 0.678048 GGCAGATCCTGTTGGACACC 60.678 60.000 0.00 0.00 46.51 4.16
958 1911 0.326264 GCAGATCCTGTTGGACACCT 59.674 55.000 0.00 0.00 46.51 4.00
959 1912 1.271597 GCAGATCCTGTTGGACACCTT 60.272 52.381 0.00 0.00 46.51 3.50
960 1913 2.430465 CAGATCCTGTTGGACACCTTG 58.570 52.381 0.00 0.00 46.51 3.61
1015 1988 1.679153 ACCGCTTATAAAAATGGCCGG 59.321 47.619 0.00 0.00 0.00 6.13
1034 2007 1.758514 TCCTCCTCGCTCACCATCC 60.759 63.158 0.00 0.00 0.00 3.51
1037 2010 3.866582 CCTCGCTCACCATCCCCC 61.867 72.222 0.00 0.00 0.00 5.40
1047 2020 2.080536 CCATCCCCCATCCAGCTGA 61.081 63.158 17.39 1.21 0.00 4.26
1055 2028 0.962356 CCATCCAGCTGAACCACCAC 60.962 60.000 17.39 0.00 0.00 4.16
1056 2029 0.962356 CATCCAGCTGAACCACCACC 60.962 60.000 17.39 0.00 0.00 4.61
1057 2030 1.426251 ATCCAGCTGAACCACCACCA 61.426 55.000 17.39 0.00 0.00 4.17
1058 2031 1.898574 CCAGCTGAACCACCACCAC 60.899 63.158 17.39 0.00 0.00 4.16
1059 2032 1.898574 CAGCTGAACCACCACCACC 60.899 63.158 8.42 0.00 0.00 4.61
1060 2033 2.194597 GCTGAACCACCACCACCA 59.805 61.111 0.00 0.00 0.00 4.17
1061 2034 1.898574 GCTGAACCACCACCACCAG 60.899 63.158 0.00 0.00 0.00 4.00
1062 2035 1.898574 CTGAACCACCACCACCAGC 60.899 63.158 0.00 0.00 0.00 4.85
1063 2036 2.343475 CTGAACCACCACCACCAGCT 62.343 60.000 0.00 0.00 0.00 4.24
1064 2037 1.600916 GAACCACCACCACCAGCTC 60.601 63.158 0.00 0.00 0.00 4.09
1066 2039 3.569210 CCACCACCACCAGCTCCA 61.569 66.667 0.00 0.00 0.00 3.86
1067 2040 2.281761 CACCACCACCAGCTCCAC 60.282 66.667 0.00 0.00 0.00 4.02
1068 2041 2.448542 ACCACCACCAGCTCCACT 60.449 61.111 0.00 0.00 0.00 4.00
1074 2047 1.303074 CACCAGCTCCACTGCACAT 60.303 57.895 0.00 0.00 45.78 3.21
1081 2054 1.735386 CTCCACTGCACATTCCAGAG 58.265 55.000 0.00 0.00 34.47 3.35
1085 2058 1.801332 CTGCACATTCCAGAGCAGC 59.199 57.895 0.00 0.00 44.04 5.25
1086 2059 0.958876 CTGCACATTCCAGAGCAGCA 60.959 55.000 0.00 0.00 44.04 4.41
1091 2064 1.338864 ACATTCCAGAGCAGCACAGAG 60.339 52.381 0.00 0.00 0.00 3.35
1092 2065 0.392729 ATTCCAGAGCAGCACAGAGC 60.393 55.000 0.00 0.00 46.19 4.09
1101 2074 4.284123 GCACAGAGCAATGGACGA 57.716 55.556 0.00 0.00 44.79 4.20
1102 2075 1.790387 GCACAGAGCAATGGACGAC 59.210 57.895 0.00 0.00 44.79 4.34
1103 2076 1.959899 GCACAGAGCAATGGACGACG 61.960 60.000 0.00 0.00 44.79 5.12
1104 2077 1.079819 ACAGAGCAATGGACGACGG 60.080 57.895 0.00 0.00 0.00 4.79
1106 2079 3.195698 GAGCAATGGACGACGGCC 61.196 66.667 14.55 14.55 0.00 6.13
1108 2081 3.499737 GCAATGGACGACGGCCTG 61.500 66.667 22.84 13.26 0.00 4.85
1210 2183 2.433145 CTCGGCAAGCTCTTCGCA 60.433 61.111 0.00 0.00 42.61 5.10
1717 2691 0.186630 ACCGGGGCTTTTTACAGGTT 59.813 50.000 6.32 0.00 0.00 3.50
1720 2694 1.957877 CGGGGCTTTTTACAGGTTTCA 59.042 47.619 0.00 0.00 0.00 2.69
1723 2697 2.287970 GGGCTTTTTACAGGTTTCACCG 60.288 50.000 0.00 0.00 44.90 4.94
1765 2739 1.720805 TCATCATCAACACGTTCCGG 58.279 50.000 0.00 0.00 0.00 5.14
2137 3120 4.689549 TTCCTGGAGCGGACCGGA 62.690 66.667 17.22 0.00 38.49 5.14
2140 3123 3.068691 CTGGAGCGGACCGGAGAA 61.069 66.667 17.22 0.00 38.49 2.87
2359 3342 1.914764 GGTGGAGGGGTACGACCAA 60.915 63.158 7.82 0.00 41.02 3.67
2578 3587 3.951979 CAATAATGGAGGTCAAGCGAC 57.048 47.619 0.00 0.00 41.80 5.19
2586 3596 1.805945 GGTCAAGCGACTACCTGCG 60.806 63.158 0.00 0.00 42.21 5.18
2624 3634 2.778299 TCAGTCCACTGTTATGGCAAC 58.222 47.619 6.61 0.00 44.12 4.17
2642 3655 4.705023 GGCAACCTAGATAAGCCTGAAAAA 59.295 41.667 0.00 0.00 42.01 1.94
2654 3667 3.054878 GCCTGAAAAAGATGCACACTTG 58.945 45.455 8.43 0.00 0.00 3.16
2691 3704 5.585390 AGAAGAAAGTGCACATGAACAAAG 58.415 37.500 21.04 0.00 0.00 2.77
2693 3707 5.329035 AGAAAGTGCACATGAACAAAGTT 57.671 34.783 21.04 0.00 0.00 2.66
2751 3765 8.237811 AGAAAAGGTCTGAAAAATACACATGT 57.762 30.769 0.00 0.00 34.29 3.21
2752 3766 9.349713 AGAAAAGGTCTGAAAAATACACATGTA 57.650 29.630 0.00 0.00 34.29 2.29
2753 3767 9.394477 GAAAAGGTCTGAAAAATACACATGTAC 57.606 33.333 0.00 0.00 32.72 2.90
2754 3768 6.721571 AGGTCTGAAAAATACACATGTACG 57.278 37.500 0.00 0.00 32.72 3.67
2755 3769 5.121768 AGGTCTGAAAAATACACATGTACGC 59.878 40.000 0.00 0.00 32.72 4.42
2756 3770 5.013236 GTCTGAAAAATACACATGTACGCG 58.987 41.667 3.53 3.53 32.72 6.01
2757 3771 4.092237 TCTGAAAAATACACATGTACGCGG 59.908 41.667 12.47 0.00 32.72 6.46
2758 3772 3.125487 TGAAAAATACACATGTACGCGGG 59.875 43.478 12.47 0.00 32.72 6.13
2759 3773 2.389962 AAATACACATGTACGCGGGT 57.610 45.000 12.47 10.91 32.72 5.28
2760 3774 3.523606 AAATACACATGTACGCGGGTA 57.476 42.857 12.47 8.44 32.72 3.69
2761 3775 3.738830 AATACACATGTACGCGGGTAT 57.261 42.857 15.92 3.94 32.72 2.73
2762 3776 2.495409 TACACATGTACGCGGGTATG 57.505 50.000 15.92 13.93 0.00 2.39
2763 3777 0.533491 ACACATGTACGCGGGTATGT 59.467 50.000 15.92 14.57 0.00 2.29
2764 3778 1.750206 ACACATGTACGCGGGTATGTA 59.250 47.619 17.52 8.24 0.00 2.29
2765 3779 2.363038 ACACATGTACGCGGGTATGTAT 59.637 45.455 17.52 7.01 0.00 2.29
2766 3780 2.729360 CACATGTACGCGGGTATGTATG 59.271 50.000 17.52 19.87 0.00 2.39
2767 3781 2.363038 ACATGTACGCGGGTATGTATGT 59.637 45.455 22.45 22.45 31.52 2.29
2768 3782 3.569277 ACATGTACGCGGGTATGTATGTA 59.431 43.478 24.69 1.91 33.10 2.29
2769 3783 4.219070 ACATGTACGCGGGTATGTATGTAT 59.781 41.667 24.69 11.68 33.10 2.29
2770 3784 5.415389 ACATGTACGCGGGTATGTATGTATA 59.585 40.000 24.69 3.46 33.10 1.47
2771 3785 6.095860 ACATGTACGCGGGTATGTATGTATAT 59.904 38.462 24.69 10.99 33.10 0.86
2772 3786 6.513806 TGTACGCGGGTATGTATGTATATT 57.486 37.500 15.92 0.00 0.00 1.28
2773 3787 6.923012 TGTACGCGGGTATGTATGTATATTT 58.077 36.000 15.92 0.00 0.00 1.40
2774 3788 7.028962 TGTACGCGGGTATGTATGTATATTTC 58.971 38.462 15.92 0.00 0.00 2.17
2775 3789 6.028146 ACGCGGGTATGTATGTATATTTCA 57.972 37.500 12.47 0.00 0.00 2.69
2776 3790 6.636705 ACGCGGGTATGTATGTATATTTCAT 58.363 36.000 12.47 0.00 0.00 2.57
2777 3791 7.101054 ACGCGGGTATGTATGTATATTTCATT 58.899 34.615 12.47 0.00 0.00 2.57
2778 3792 8.252417 ACGCGGGTATGTATGTATATTTCATTA 58.748 33.333 12.47 0.00 0.00 1.90
2779 3793 8.537223 CGCGGGTATGTATGTATATTTCATTAC 58.463 37.037 0.00 0.00 0.00 1.89
2780 3794 9.595823 GCGGGTATGTATGTATATTTCATTACT 57.404 33.333 0.00 0.00 0.00 2.24
2821 3835 3.599343 TGGATAGTGCTTACAAGTGCAG 58.401 45.455 0.00 0.00 40.06 4.41
2838 3852 2.173356 TGCAGATCCCCATCTTACAAGG 59.827 50.000 0.00 0.00 37.25 3.61
2854 3868 8.974060 TCTTACAAGGACCATATTCCATTTAC 57.026 34.615 0.00 0.00 38.25 2.01
2861 3875 9.745018 AAGGACCATATTCCATTTACATATCAG 57.255 33.333 0.00 0.00 38.25 2.90
2878 3892 7.564793 ACATATCAGCACCAGAACATAAGTAA 58.435 34.615 0.00 0.00 0.00 2.24
2884 3898 5.648092 AGCACCAGAACATAAGTAAATGTCC 59.352 40.000 0.00 0.00 39.16 4.02
2890 3904 3.275999 ACATAAGTAAATGTCCGGGCAC 58.724 45.455 13.07 0.00 35.08 5.01
2891 3905 3.054655 ACATAAGTAAATGTCCGGGCACT 60.055 43.478 13.07 0.00 35.08 4.40
2897 3911 0.037590 AATGTCCGGGCACTGCTAAA 59.962 50.000 13.07 0.00 0.00 1.85
2915 3929 4.444720 GCTAAATCGACCGTAAGAATCCTG 59.555 45.833 0.00 0.00 43.02 3.86
2919 3933 6.401047 AATCGACCGTAAGAATCCTGATTA 57.599 37.500 0.00 0.00 43.02 1.75
2956 3985 5.428496 TGAACATTCAGAGAAGCAACAAG 57.572 39.130 0.00 0.00 32.50 3.16
2971 4000 3.441572 GCAACAAGTGTATGCTCTTCCAT 59.558 43.478 9.77 0.00 37.12 3.41
2973 4002 3.525537 ACAAGTGTATGCTCTTCCATCG 58.474 45.455 0.00 0.00 0.00 3.84
2985 4014 5.219633 GCTCTTCCATCGAGAAAGATAGAC 58.780 45.833 7.21 0.00 0.00 2.59
2986 4015 5.425577 TCTTCCATCGAGAAAGATAGACG 57.574 43.478 0.00 0.00 0.00 4.18
2987 4016 4.882427 TCTTCCATCGAGAAAGATAGACGT 59.118 41.667 0.00 0.00 0.00 4.34
2988 4017 4.553756 TCCATCGAGAAAGATAGACGTG 57.446 45.455 0.00 0.00 0.00 4.49
2989 4018 3.046390 CCATCGAGAAAGATAGACGTGC 58.954 50.000 0.00 0.00 0.00 5.34
2990 4019 3.489229 CCATCGAGAAAGATAGACGTGCA 60.489 47.826 0.00 0.00 0.00 4.57
2991 4020 4.294232 CATCGAGAAAGATAGACGTGCAT 58.706 43.478 0.00 0.00 0.00 3.96
3005 4034 2.094182 ACGTGCATCGAGGATAACACTT 60.094 45.455 14.18 0.00 42.86 3.16
3014 4043 5.227908 TCGAGGATAACACTTCAAAGACAC 58.772 41.667 0.00 0.00 0.00 3.67
3053 4090 5.828747 AGCATTGCAAAGACATGATGATAC 58.171 37.500 11.91 0.00 0.00 2.24
3107 4144 4.098349 AGCAACATAAACATTCATCGCCAT 59.902 37.500 0.00 0.00 0.00 4.40
3234 4272 5.915812 TGTCAAACGATGATTCTTCGAAA 57.084 34.783 23.74 7.32 40.97 3.46
3375 4416 9.347934 CTCTTAAATTAGATAGGCATAGACACG 57.652 37.037 0.00 0.00 0.00 4.49
3382 4423 5.918608 AGATAGGCATAGACACGACAAATT 58.081 37.500 0.00 0.00 0.00 1.82
3386 4428 5.242434 AGGCATAGACACGACAAATTGTAA 58.758 37.500 0.00 0.00 0.00 2.41
3417 4459 4.277476 TGAGCTCCTTTTCAAGTTCCAAA 58.723 39.130 12.15 0.00 0.00 3.28
3434 4476 7.771183 AGTTCCAAACAATTAATGTATCGCAT 58.229 30.769 0.00 0.00 42.99 4.73
3437 4479 8.627487 TCCAAACAATTAATGTATCGCATTTC 57.373 30.769 0.00 0.00 44.82 2.17
3513 4555 5.595814 AGGAACCGATACTAATCCTAGGA 57.404 43.478 15.46 15.46 38.71 2.94
3526 4568 6.781014 ACTAATCCTAGGAATTACGGTGATGA 59.219 38.462 17.30 0.00 0.00 2.92
3644 4686 3.723260 TGCAATGATATCGACGCCTTTA 58.277 40.909 0.00 0.00 0.00 1.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
100 101 1.425066 AGTGGGACTCTCAAATTGCCA 59.575 47.619 0.00 0.00 0.00 4.92
116 117 0.612732 ACATGGATGTGCCCAAGTGG 60.613 55.000 0.00 0.00 40.03 4.00
118 119 1.549203 GAACATGGATGTGCCCAAGT 58.451 50.000 0.00 0.00 41.61 3.16
168 180 0.317186 GTACGTTTGGTTGTTGCGGG 60.317 55.000 0.00 0.00 0.00 6.13
188 200 1.550072 TGAATGAGGCGAGACATGTCA 59.450 47.619 27.02 6.11 0.00 3.58
200 212 3.858129 GCACCACATTGTGTTGAATGAGG 60.858 47.826 17.41 0.00 44.94 3.86
219 231 1.672881 GTCCTGCCATTCTGTATGCAC 59.327 52.381 0.00 0.00 32.60 4.57
231 243 2.900273 GCGGATGTAGTCCTGCCA 59.100 61.111 0.00 0.00 45.46 4.92
246 258 1.011904 CTCAATCATGGTTCGCGCG 60.012 57.895 26.76 26.76 0.00 6.86
249 261 2.540361 GCATGTCTCAATCATGGTTCGC 60.540 50.000 7.78 0.00 41.77 4.70
251 263 4.514441 CCTAGCATGTCTCAATCATGGTTC 59.486 45.833 14.05 0.00 46.99 3.62
306 1243 2.644676 TCCCAACGTTTGACAATGTGA 58.355 42.857 0.00 0.00 32.07 3.58
326 1263 4.478317 TGATAAACCCAGATGGAGATGGTT 59.522 41.667 0.00 0.00 40.91 3.67
329 1266 6.206243 GTGATTGATAAACCCAGATGGAGATG 59.794 42.308 0.00 0.00 37.39 2.90
354 1295 2.536761 TGAAGACCTAAACCCGTGTG 57.463 50.000 0.00 0.00 0.00 3.82
373 1314 2.676342 GGCATGTTCCGTTAGTCGAAAT 59.324 45.455 0.00 0.00 42.86 2.17
377 1318 1.278238 GAGGCATGTTCCGTTAGTCG 58.722 55.000 0.00 0.00 39.52 4.18
424 1365 9.657121 GGAAAAACGCATTCAATGAAAAATTTA 57.343 25.926 0.00 0.00 0.00 1.40
431 1372 5.582269 TGTTTGGAAAAACGCATTCAATGAA 59.418 32.000 0.00 0.00 35.50 2.57
436 1377 5.837437 ACTATGTTTGGAAAAACGCATTCA 58.163 33.333 0.00 0.00 35.50 2.57
496 1437 4.939255 AGTTGGGATGGAATTTGAGATGT 58.061 39.130 0.00 0.00 0.00 3.06
497 1438 6.377996 TGTTAGTTGGGATGGAATTTGAGATG 59.622 38.462 0.00 0.00 0.00 2.90
498 1439 6.493166 TGTTAGTTGGGATGGAATTTGAGAT 58.507 36.000 0.00 0.00 0.00 2.75
499 1440 5.886609 TGTTAGTTGGGATGGAATTTGAGA 58.113 37.500 0.00 0.00 0.00 3.27
500 1441 6.780457 ATGTTAGTTGGGATGGAATTTGAG 57.220 37.500 0.00 0.00 0.00 3.02
501 1442 6.154363 GGAATGTTAGTTGGGATGGAATTTGA 59.846 38.462 0.00 0.00 0.00 2.69
502 1443 6.340522 GGAATGTTAGTTGGGATGGAATTTG 58.659 40.000 0.00 0.00 0.00 2.32
503 1444 5.127031 CGGAATGTTAGTTGGGATGGAATTT 59.873 40.000 0.00 0.00 0.00 1.82
504 1445 4.644685 CGGAATGTTAGTTGGGATGGAATT 59.355 41.667 0.00 0.00 0.00 2.17
505 1446 4.207165 CGGAATGTTAGTTGGGATGGAAT 58.793 43.478 0.00 0.00 0.00 3.01
506 1447 3.616219 CGGAATGTTAGTTGGGATGGAA 58.384 45.455 0.00 0.00 0.00 3.53
507 1448 2.092646 CCGGAATGTTAGTTGGGATGGA 60.093 50.000 0.00 0.00 0.00 3.41
508 1449 2.297701 CCGGAATGTTAGTTGGGATGG 58.702 52.381 0.00 0.00 0.00 3.51
509 1450 1.676006 GCCGGAATGTTAGTTGGGATG 59.324 52.381 5.05 0.00 0.00 3.51
510 1451 1.409661 GGCCGGAATGTTAGTTGGGAT 60.410 52.381 5.05 0.00 0.00 3.85
511 1452 0.034863 GGCCGGAATGTTAGTTGGGA 60.035 55.000 5.05 0.00 0.00 4.37
512 1453 1.035385 GGGCCGGAATGTTAGTTGGG 61.035 60.000 5.05 0.00 0.00 4.12
513 1454 1.373590 CGGGCCGGAATGTTAGTTGG 61.374 60.000 20.56 0.00 0.00 3.77
514 1455 2.094904 CGGGCCGGAATGTTAGTTG 58.905 57.895 20.56 0.00 0.00 3.16
515 1456 4.629779 CGGGCCGGAATGTTAGTT 57.370 55.556 20.56 0.00 0.00 2.24
529 1470 1.999634 AATTGGATGCTCCCTCCGGG 62.000 60.000 0.00 0.00 46.11 5.73
540 1481 5.170021 TCATTTCCGCAAAGAAATTGGATG 58.830 37.500 4.15 0.00 42.46 3.51
542 1483 4.862902 TCATTTCCGCAAAGAAATTGGA 57.137 36.364 4.15 0.00 42.46 3.53
554 1495 3.489785 CGTCAGGTACTTATCATTTCCGC 59.510 47.826 0.00 0.00 34.60 5.54
555 1496 4.679662 ACGTCAGGTACTTATCATTTCCG 58.320 43.478 0.00 0.00 34.60 4.30
556 1497 5.657474 TGACGTCAGGTACTTATCATTTCC 58.343 41.667 15.76 0.00 34.60 3.13
557 1498 6.814076 CTGACGTCAGGTACTTATCATTTC 57.186 41.667 33.36 0.00 40.20 2.17
571 1512 2.807045 GCTCGCACCTGACGTCAG 60.807 66.667 33.87 33.87 43.40 3.51
572 1513 3.601685 TGCTCGCACCTGACGTCA 61.602 61.111 18.88 18.88 0.00 4.35
573 1514 3.106407 GTGCTCGCACCTGACGTC 61.106 66.667 9.11 9.11 40.79 4.34
574 1515 3.226429 ATGTGCTCGCACCTGACGT 62.226 57.895 18.35 0.00 45.63 4.34
575 1516 2.433145 ATGTGCTCGCACCTGACG 60.433 61.111 18.35 0.00 45.63 4.35
576 1517 1.374631 TCATGTGCTCGCACCTGAC 60.375 57.895 20.86 0.00 43.20 3.51
577 1518 1.374631 GTCATGTGCTCGCACCTGA 60.375 57.895 20.86 20.86 44.85 3.86
578 1519 1.229975 TTGTCATGTGCTCGCACCTG 61.230 55.000 18.35 17.92 45.63 4.00
579 1520 0.534877 TTTGTCATGTGCTCGCACCT 60.535 50.000 18.35 6.78 45.63 4.00
580 1521 0.523072 ATTTGTCATGTGCTCGCACC 59.477 50.000 18.35 4.57 45.63 5.01
581 1522 1.197492 TGATTTGTCATGTGCTCGCAC 59.803 47.619 14.75 14.75 46.33 5.34
582 1523 1.521580 TGATTTGTCATGTGCTCGCA 58.478 45.000 0.00 0.00 0.00 5.10
583 1524 2.838386 ATGATTTGTCATGTGCTCGC 57.162 45.000 0.00 0.00 0.00 5.03
584 1525 3.306973 ACGTATGATTTGTCATGTGCTCG 59.693 43.478 1.37 0.00 0.00 5.03
585 1526 4.864916 ACGTATGATTTGTCATGTGCTC 57.135 40.909 1.37 0.00 0.00 4.26
586 1527 6.925610 ATAACGTATGATTTGTCATGTGCT 57.074 33.333 0.00 0.00 0.00 4.40
587 1528 7.969387 AAATAACGTATGATTTGTCATGTGC 57.031 32.000 0.00 0.00 0.00 4.57
590 1531 9.117145 GCCATAAATAACGTATGATTTGTCATG 57.883 33.333 11.32 8.14 31.71 3.07
591 1532 8.845227 TGCCATAAATAACGTATGATTTGTCAT 58.155 29.630 11.32 0.00 31.71 3.06
592 1533 8.214721 TGCCATAAATAACGTATGATTTGTCA 57.785 30.769 11.32 0.00 31.71 3.58
593 1534 9.677567 ATTGCCATAAATAACGTATGATTTGTC 57.322 29.630 11.32 0.00 31.71 3.18
599 1540 9.772973 ACTAGAATTGCCATAAATAACGTATGA 57.227 29.630 0.00 0.00 31.71 2.15
600 1541 9.811655 CACTAGAATTGCCATAAATAACGTATG 57.188 33.333 0.00 0.00 0.00 2.39
601 1542 9.772973 TCACTAGAATTGCCATAAATAACGTAT 57.227 29.630 0.00 0.00 0.00 3.06
602 1543 9.037737 GTCACTAGAATTGCCATAAATAACGTA 57.962 33.333 0.00 0.00 0.00 3.57
603 1544 7.254319 CGTCACTAGAATTGCCATAAATAACGT 60.254 37.037 0.00 0.00 0.00 3.99
604 1545 7.063456 CGTCACTAGAATTGCCATAAATAACG 58.937 38.462 0.00 0.00 0.00 3.18
605 1546 7.352739 CCGTCACTAGAATTGCCATAAATAAC 58.647 38.462 0.00 0.00 0.00 1.89
606 1547 6.017440 GCCGTCACTAGAATTGCCATAAATAA 60.017 38.462 0.00 0.00 0.00 1.40
607 1548 5.468746 GCCGTCACTAGAATTGCCATAAATA 59.531 40.000 0.00 0.00 0.00 1.40
608 1549 4.275936 GCCGTCACTAGAATTGCCATAAAT 59.724 41.667 0.00 0.00 0.00 1.40
609 1550 3.625764 GCCGTCACTAGAATTGCCATAAA 59.374 43.478 0.00 0.00 0.00 1.40
610 1551 3.202906 GCCGTCACTAGAATTGCCATAA 58.797 45.455 0.00 0.00 0.00 1.90
611 1552 2.169561 TGCCGTCACTAGAATTGCCATA 59.830 45.455 0.00 0.00 0.00 2.74
612 1553 1.065491 TGCCGTCACTAGAATTGCCAT 60.065 47.619 0.00 0.00 0.00 4.40
613 1554 0.323302 TGCCGTCACTAGAATTGCCA 59.677 50.000 0.00 0.00 0.00 4.92
614 1555 1.398390 CTTGCCGTCACTAGAATTGCC 59.602 52.381 0.00 0.00 0.00 4.52
615 1556 2.076863 ACTTGCCGTCACTAGAATTGC 58.923 47.619 0.00 0.00 0.00 3.56
616 1557 4.929808 ACTAACTTGCCGTCACTAGAATTG 59.070 41.667 0.00 0.00 0.00 2.32
617 1558 5.148651 ACTAACTTGCCGTCACTAGAATT 57.851 39.130 0.00 0.00 0.00 2.17
618 1559 4.803098 ACTAACTTGCCGTCACTAGAAT 57.197 40.909 0.00 0.00 0.00 2.40
619 1560 4.038282 TCAACTAACTTGCCGTCACTAGAA 59.962 41.667 0.00 0.00 0.00 2.10
620 1561 3.570975 TCAACTAACTTGCCGTCACTAGA 59.429 43.478 0.00 0.00 0.00 2.43
621 1562 3.909430 TCAACTAACTTGCCGTCACTAG 58.091 45.455 0.00 0.00 0.00 2.57
622 1563 4.242475 CATCAACTAACTTGCCGTCACTA 58.758 43.478 0.00 0.00 0.00 2.74
623 1564 2.902705 TCAACTAACTTGCCGTCACT 57.097 45.000 0.00 0.00 0.00 3.41
624 1565 2.412847 GCATCAACTAACTTGCCGTCAC 60.413 50.000 0.00 0.00 0.00 3.67
625 1566 1.804151 GCATCAACTAACTTGCCGTCA 59.196 47.619 0.00 0.00 0.00 4.35
626 1567 1.804151 TGCATCAACTAACTTGCCGTC 59.196 47.619 0.00 0.00 34.20 4.79
627 1568 1.535462 GTGCATCAACTAACTTGCCGT 59.465 47.619 0.00 0.00 34.20 5.68
628 1569 1.535028 TGTGCATCAACTAACTTGCCG 59.465 47.619 0.00 0.00 34.20 5.69
629 1570 2.351738 GGTGTGCATCAACTAACTTGCC 60.352 50.000 0.00 0.00 34.20 4.52
630 1571 2.665519 CGGTGTGCATCAACTAACTTGC 60.666 50.000 0.00 0.00 35.67 4.01
631 1572 2.548057 ACGGTGTGCATCAACTAACTTG 59.452 45.455 0.00 0.00 0.00 3.16
632 1573 2.846193 ACGGTGTGCATCAACTAACTT 58.154 42.857 0.00 0.00 0.00 2.66
633 1574 2.543777 ACGGTGTGCATCAACTAACT 57.456 45.000 0.00 0.00 0.00 2.24
634 1575 4.939509 ATTACGGTGTGCATCAACTAAC 57.060 40.909 0.00 0.00 0.00 2.34
635 1576 5.950758 AAATTACGGTGTGCATCAACTAA 57.049 34.783 0.00 0.00 0.00 2.24
636 1577 5.703592 AGAAAATTACGGTGTGCATCAACTA 59.296 36.000 0.00 0.00 0.00 2.24
637 1578 4.518970 AGAAAATTACGGTGTGCATCAACT 59.481 37.500 0.00 0.00 0.00 3.16
638 1579 4.616802 CAGAAAATTACGGTGTGCATCAAC 59.383 41.667 0.00 0.00 0.00 3.18
639 1580 4.277174 ACAGAAAATTACGGTGTGCATCAA 59.723 37.500 0.00 0.00 0.00 2.57
640 1581 3.818210 ACAGAAAATTACGGTGTGCATCA 59.182 39.130 0.00 0.00 0.00 3.07
641 1582 4.419522 ACAGAAAATTACGGTGTGCATC 57.580 40.909 0.00 0.00 0.00 3.91
642 1583 4.277174 TCAACAGAAAATTACGGTGTGCAT 59.723 37.500 0.00 0.00 0.00 3.96
643 1584 3.628032 TCAACAGAAAATTACGGTGTGCA 59.372 39.130 0.00 0.00 0.00 4.57
644 1585 4.217754 TCAACAGAAAATTACGGTGTGC 57.782 40.909 0.00 0.00 0.00 4.57
645 1586 7.513190 TTTTTCAACAGAAAATTACGGTGTG 57.487 32.000 4.45 0.00 40.01 3.82
646 1587 8.710835 AATTTTTCAACAGAAAATTACGGTGT 57.289 26.923 4.45 0.00 42.03 4.16
657 1598 8.855279 CGTGTTTCAGTTAATTTTTCAACAGAA 58.145 29.630 0.00 0.00 31.02 3.02
658 1599 8.237949 TCGTGTTTCAGTTAATTTTTCAACAGA 58.762 29.630 0.00 0.00 0.00 3.41
659 1600 8.388319 TCGTGTTTCAGTTAATTTTTCAACAG 57.612 30.769 0.00 0.00 0.00 3.16
660 1601 8.237949 TCTCGTGTTTCAGTTAATTTTTCAACA 58.762 29.630 0.00 0.00 0.00 3.33
661 1602 8.609478 TCTCGTGTTTCAGTTAATTTTTCAAC 57.391 30.769 0.00 0.00 0.00 3.18
662 1603 9.796120 AATCTCGTGTTTCAGTTAATTTTTCAA 57.204 25.926 0.00 0.00 0.00 2.69
663 1604 9.232082 CAATCTCGTGTTTCAGTTAATTTTTCA 57.768 29.630 0.00 0.00 0.00 2.69
664 1605 8.207906 GCAATCTCGTGTTTCAGTTAATTTTTC 58.792 33.333 0.00 0.00 0.00 2.29
665 1606 7.920682 AGCAATCTCGTGTTTCAGTTAATTTTT 59.079 29.630 0.00 0.00 0.00 1.94
666 1607 7.425606 AGCAATCTCGTGTTTCAGTTAATTTT 58.574 30.769 0.00 0.00 0.00 1.82
667 1608 6.970484 AGCAATCTCGTGTTTCAGTTAATTT 58.030 32.000 0.00 0.00 0.00 1.82
668 1609 6.560253 AGCAATCTCGTGTTTCAGTTAATT 57.440 33.333 0.00 0.00 0.00 1.40
669 1610 7.677276 GCATAGCAATCTCGTGTTTCAGTTAAT 60.677 37.037 0.00 0.00 0.00 1.40
670 1611 6.402118 GCATAGCAATCTCGTGTTTCAGTTAA 60.402 38.462 0.00 0.00 0.00 2.01
671 1612 5.063438 GCATAGCAATCTCGTGTTTCAGTTA 59.937 40.000 0.00 0.00 0.00 2.24
672 1613 4.142816 GCATAGCAATCTCGTGTTTCAGTT 60.143 41.667 0.00 0.00 0.00 3.16
673 1614 3.372206 GCATAGCAATCTCGTGTTTCAGT 59.628 43.478 0.00 0.00 0.00 3.41
674 1615 3.620374 AGCATAGCAATCTCGTGTTTCAG 59.380 43.478 0.00 0.00 0.00 3.02
675 1616 3.599343 AGCATAGCAATCTCGTGTTTCA 58.401 40.909 0.00 0.00 0.00 2.69
676 1617 4.142816 ACAAGCATAGCAATCTCGTGTTTC 60.143 41.667 0.00 0.00 0.00 2.78
677 1618 3.753272 ACAAGCATAGCAATCTCGTGTTT 59.247 39.130 0.00 0.00 0.00 2.83
678 1619 3.338249 ACAAGCATAGCAATCTCGTGTT 58.662 40.909 0.00 0.00 0.00 3.32
679 1620 2.932614 GACAAGCATAGCAATCTCGTGT 59.067 45.455 0.00 0.00 0.00 4.49
680 1621 2.931969 TGACAAGCATAGCAATCTCGTG 59.068 45.455 0.00 0.00 0.00 4.35
681 1622 3.251479 TGACAAGCATAGCAATCTCGT 57.749 42.857 0.00 0.00 0.00 4.18
682 1623 3.620374 AGTTGACAAGCATAGCAATCTCG 59.380 43.478 0.00 0.00 0.00 4.04
683 1624 6.668541 TTAGTTGACAAGCATAGCAATCTC 57.331 37.500 0.00 0.00 0.00 2.75
684 1625 6.656693 ACTTTAGTTGACAAGCATAGCAATCT 59.343 34.615 0.00 0.00 0.00 2.40
685 1626 6.846350 ACTTTAGTTGACAAGCATAGCAATC 58.154 36.000 0.00 0.00 0.00 2.67
686 1627 6.824305 ACTTTAGTTGACAAGCATAGCAAT 57.176 33.333 0.00 0.00 0.00 3.56
687 1628 6.633500 AACTTTAGTTGACAAGCATAGCAA 57.367 33.333 0.00 0.00 36.80 3.91
701 1642 1.792006 CGAGGGCGACAACTTTAGTT 58.208 50.000 0.00 0.00 40.82 2.24
702 1643 0.669625 GCGAGGGCGACAACTTTAGT 60.670 55.000 0.00 0.00 40.82 2.24
703 1644 2.079049 GCGAGGGCGACAACTTTAG 58.921 57.895 0.00 0.00 40.82 1.85
704 1645 4.272100 GCGAGGGCGACAACTTTA 57.728 55.556 0.00 0.00 40.82 1.85
712 1653 1.327690 ATTTAGTGAGGCGAGGGCGA 61.328 55.000 0.00 0.00 41.24 5.54
713 1654 0.462047 AATTTAGTGAGGCGAGGGCG 60.462 55.000 0.00 0.00 41.24 6.13
714 1655 1.401905 CAAATTTAGTGAGGCGAGGGC 59.598 52.381 0.00 0.00 38.90 5.19
715 1656 2.678336 GACAAATTTAGTGAGGCGAGGG 59.322 50.000 0.00 0.00 0.00 4.30
716 1657 3.334691 TGACAAATTTAGTGAGGCGAGG 58.665 45.455 0.00 0.00 0.00 4.63
717 1658 6.662414 TTATGACAAATTTAGTGAGGCGAG 57.338 37.500 0.00 0.00 0.00 5.03
718 1659 7.441890 TTTTATGACAAATTTAGTGAGGCGA 57.558 32.000 0.00 0.00 0.00 5.54
740 1681 7.043458 CGAGTACACAGCAAATCAAACATTTTT 60.043 33.333 0.00 0.00 0.00 1.94
741 1682 6.417635 CGAGTACACAGCAAATCAAACATTTT 59.582 34.615 0.00 0.00 0.00 1.82
742 1683 5.914635 CGAGTACACAGCAAATCAAACATTT 59.085 36.000 0.00 0.00 0.00 2.32
743 1684 5.451908 CGAGTACACAGCAAATCAAACATT 58.548 37.500 0.00 0.00 0.00 2.71
744 1685 4.083324 CCGAGTACACAGCAAATCAAACAT 60.083 41.667 0.00 0.00 0.00 2.71
745 1686 3.249799 CCGAGTACACAGCAAATCAAACA 59.750 43.478 0.00 0.00 0.00 2.83
746 1687 3.364964 CCCGAGTACACAGCAAATCAAAC 60.365 47.826 0.00 0.00 0.00 2.93
747 1688 2.811431 CCCGAGTACACAGCAAATCAAA 59.189 45.455 0.00 0.00 0.00 2.69
748 1689 2.422597 CCCGAGTACACAGCAAATCAA 58.577 47.619 0.00 0.00 0.00 2.57
749 1690 1.338674 CCCCGAGTACACAGCAAATCA 60.339 52.381 0.00 0.00 0.00 2.57
750 1691 1.369625 CCCCGAGTACACAGCAAATC 58.630 55.000 0.00 0.00 0.00 2.17
751 1692 0.676782 GCCCCGAGTACACAGCAAAT 60.677 55.000 0.00 0.00 0.00 2.32
752 1693 1.302192 GCCCCGAGTACACAGCAAA 60.302 57.895 0.00 0.00 0.00 3.68
753 1694 2.345991 GCCCCGAGTACACAGCAA 59.654 61.111 0.00 0.00 0.00 3.91
754 1695 4.063967 CGCCCCGAGTACACAGCA 62.064 66.667 0.00 0.00 0.00 4.41
755 1696 2.216750 TAACGCCCCGAGTACACAGC 62.217 60.000 0.00 0.00 0.00 4.40
756 1697 0.458669 ATAACGCCCCGAGTACACAG 59.541 55.000 0.00 0.00 0.00 3.66
757 1698 0.457035 GATAACGCCCCGAGTACACA 59.543 55.000 0.00 0.00 0.00 3.72
758 1699 0.593263 CGATAACGCCCCGAGTACAC 60.593 60.000 0.00 0.00 0.00 2.90
759 1700 1.727511 CCGATAACGCCCCGAGTACA 61.728 60.000 0.00 0.00 38.29 2.90
760 1701 1.008079 CCGATAACGCCCCGAGTAC 60.008 63.158 0.00 0.00 38.29 2.73
761 1702 0.538057 ATCCGATAACGCCCCGAGTA 60.538 55.000 0.00 0.00 38.29 2.59
762 1703 1.397390 AATCCGATAACGCCCCGAGT 61.397 55.000 0.00 0.00 38.29 4.18
763 1704 0.944311 CAATCCGATAACGCCCCGAG 60.944 60.000 0.00 0.00 38.29 4.63
764 1705 1.068417 CAATCCGATAACGCCCCGA 59.932 57.895 0.00 0.00 38.29 5.14
765 1706 0.812412 AACAATCCGATAACGCCCCG 60.812 55.000 0.00 0.00 38.29 5.73
766 1707 1.385528 AAACAATCCGATAACGCCCC 58.614 50.000 0.00 0.00 38.29 5.80
767 1708 2.681344 AGAAAACAATCCGATAACGCCC 59.319 45.455 0.00 0.00 38.29 6.13
768 1709 4.351131 AAGAAAACAATCCGATAACGCC 57.649 40.909 0.00 0.00 38.29 5.68
769 1710 5.059221 CACAAAGAAAACAATCCGATAACGC 59.941 40.000 0.00 0.00 38.29 4.84
770 1711 5.059221 GCACAAAGAAAACAATCCGATAACG 59.941 40.000 0.00 0.00 39.43 3.18
771 1712 5.918011 TGCACAAAGAAAACAATCCGATAAC 59.082 36.000 0.00 0.00 0.00 1.89
772 1713 5.918011 GTGCACAAAGAAAACAATCCGATAA 59.082 36.000 13.17 0.00 0.00 1.75
773 1714 5.457140 GTGCACAAAGAAAACAATCCGATA 58.543 37.500 13.17 0.00 0.00 2.92
774 1715 4.298332 GTGCACAAAGAAAACAATCCGAT 58.702 39.130 13.17 0.00 0.00 4.18
775 1716 3.490078 GGTGCACAAAGAAAACAATCCGA 60.490 43.478 20.43 0.00 0.00 4.55
776 1717 2.794350 GGTGCACAAAGAAAACAATCCG 59.206 45.455 20.43 0.00 0.00 4.18
777 1718 2.794350 CGGTGCACAAAGAAAACAATCC 59.206 45.455 20.43 0.00 0.00 3.01
778 1719 3.443976 ACGGTGCACAAAGAAAACAATC 58.556 40.909 20.43 0.00 0.00 2.67
779 1720 3.443976 GACGGTGCACAAAGAAAACAAT 58.556 40.909 20.43 0.00 0.00 2.71
780 1721 2.729467 CGACGGTGCACAAAGAAAACAA 60.729 45.455 20.43 0.00 0.00 2.83
781 1722 1.202087 CGACGGTGCACAAAGAAAACA 60.202 47.619 20.43 0.00 0.00 2.83
782 1723 1.462791 CGACGGTGCACAAAGAAAAC 58.537 50.000 20.43 0.00 0.00 2.43
783 1724 0.378962 CCGACGGTGCACAAAGAAAA 59.621 50.000 20.43 0.00 0.00 2.29
784 1725 0.745128 ACCGACGGTGCACAAAGAAA 60.745 50.000 21.02 0.00 32.98 2.52
785 1726 1.153329 ACCGACGGTGCACAAAGAA 60.153 52.632 21.02 0.00 32.98 2.52
786 1727 2.502093 ACCGACGGTGCACAAAGA 59.498 55.556 21.02 0.00 32.98 2.52
795 1736 1.880675 CATCTATCTAGCACCGACGGT 59.119 52.381 15.37 15.37 35.62 4.83
870 1815 6.269315 CACTTTACAGTTTACACCATGCAAA 58.731 36.000 0.00 0.00 0.00 3.68
872 1817 4.277174 CCACTTTACAGTTTACACCATGCA 59.723 41.667 0.00 0.00 0.00 3.96
873 1818 4.277423 ACCACTTTACAGTTTACACCATGC 59.723 41.667 0.00 0.00 0.00 4.06
874 1819 5.298276 ACACCACTTTACAGTTTACACCATG 59.702 40.000 0.00 0.00 0.00 3.66
875 1820 5.298276 CACACCACTTTACAGTTTACACCAT 59.702 40.000 0.00 0.00 0.00 3.55
878 1823 4.496840 GCCACACCACTTTACAGTTTACAC 60.497 45.833 0.00 0.00 0.00 2.90
879 1824 3.628487 GCCACACCACTTTACAGTTTACA 59.372 43.478 0.00 0.00 0.00 2.41
881 1826 3.215975 GGCCACACCACTTTACAGTTTA 58.784 45.455 0.00 0.00 38.86 2.01
882 1827 2.028876 GGCCACACCACTTTACAGTTT 58.971 47.619 0.00 0.00 38.86 2.66
884 1829 0.179001 GGGCCACACCACTTTACAGT 60.179 55.000 4.39 0.00 42.05 3.55
885 1830 0.110486 AGGGCCACACCACTTTACAG 59.890 55.000 6.18 0.00 42.05 2.74
900 1845 4.219288 CCTCTGCAATTTTCCATATAGGGC 59.781 45.833 0.00 0.00 38.24 5.19
957 1910 2.287788 GGCCATTAATCGGTGATGCAAG 60.288 50.000 0.00 0.00 0.00 4.01
958 1911 1.680735 GGCCATTAATCGGTGATGCAA 59.319 47.619 0.00 0.00 0.00 4.08
959 1912 1.317613 GGCCATTAATCGGTGATGCA 58.682 50.000 0.00 0.00 0.00 3.96
960 1913 1.001378 GTGGCCATTAATCGGTGATGC 60.001 52.381 9.72 0.00 0.00 3.91
1015 1988 1.439644 GATGGTGAGCGAGGAGGAC 59.560 63.158 0.00 0.00 0.00 3.85
1034 2007 1.379044 GTGGTTCAGCTGGATGGGG 60.379 63.158 15.13 0.00 0.00 4.96
1037 2010 0.962356 GGTGGTGGTTCAGCTGGATG 60.962 60.000 15.13 0.00 32.61 3.51
1047 2020 2.515901 GAGCTGGTGGTGGTGGTT 59.484 61.111 0.00 0.00 0.00 3.67
1055 2028 2.670934 GTGCAGTGGAGCTGGTGG 60.671 66.667 0.00 0.00 45.14 4.61
1056 2029 0.892358 AATGTGCAGTGGAGCTGGTG 60.892 55.000 0.00 0.00 45.14 4.17
1057 2030 0.607489 GAATGTGCAGTGGAGCTGGT 60.607 55.000 0.00 0.00 45.14 4.00
1058 2031 1.310933 GGAATGTGCAGTGGAGCTGG 61.311 60.000 0.00 0.00 45.14 4.85
1060 2033 0.322277 CTGGAATGTGCAGTGGAGCT 60.322 55.000 0.00 0.00 30.66 4.09
1061 2034 0.321919 TCTGGAATGTGCAGTGGAGC 60.322 55.000 0.00 0.00 37.12 4.70
1062 2035 1.735386 CTCTGGAATGTGCAGTGGAG 58.265 55.000 0.00 0.00 37.12 3.86
1063 2036 0.321919 GCTCTGGAATGTGCAGTGGA 60.322 55.000 0.00 0.00 37.12 4.02
1064 2037 0.607217 TGCTCTGGAATGTGCAGTGG 60.607 55.000 0.00 0.00 37.12 4.00
1066 2039 3.244764 CTGCTCTGGAATGTGCAGT 57.755 52.632 9.50 0.00 44.58 4.40
1068 2041 1.073548 TGCTGCTCTGGAATGTGCA 59.926 52.632 0.00 0.00 35.55 4.57
1074 2047 1.004080 GCTCTGTGCTGCTCTGGAA 60.004 57.895 0.00 0.00 38.95 3.53
1081 2054 1.505353 GTCCATTGCTCTGTGCTGC 59.495 57.895 3.20 0.00 43.37 5.25
1085 2058 1.354337 CCGTCGTCCATTGCTCTGTG 61.354 60.000 0.00 0.00 0.00 3.66
1086 2059 1.079819 CCGTCGTCCATTGCTCTGT 60.080 57.895 0.00 0.00 0.00 3.41
1091 2064 3.499737 CAGGCCGTCGTCCATTGC 61.500 66.667 0.00 0.00 0.00 3.56
1092 2065 2.819595 CCAGGCCGTCGTCCATTG 60.820 66.667 0.00 0.00 0.00 2.82
1093 2066 4.096003 CCCAGGCCGTCGTCCATT 62.096 66.667 0.00 0.00 0.00 3.16
1121 2094 2.035442 GCTTCTTGTGAGGCGTCCC 61.035 63.158 3.56 0.00 35.64 4.46
1129 2102 1.227823 CACCACCCGCTTCTTGTGA 60.228 57.895 0.00 0.00 31.66 3.58
1131 2104 2.594592 GCACCACCCGCTTCTTGT 60.595 61.111 0.00 0.00 0.00 3.16
1132 2105 2.281761 AGCACCACCCGCTTCTTG 60.282 61.111 0.00 0.00 35.82 3.02
1552 2525 1.218316 CGGCAGGTACAGGAAGGAC 59.782 63.158 0.00 0.00 0.00 3.85
1717 2691 3.691342 CGGCAGAGGTCCGGTGAA 61.691 66.667 0.00 0.00 42.99 3.18
2018 2995 2.355818 GGACCACCCATAGAAACCTCAC 60.356 54.545 0.00 0.00 34.14 3.51
2137 3120 0.768221 TCACCACCAGCCCTCTTTCT 60.768 55.000 0.00 0.00 0.00 2.52
2140 3123 0.768221 TCTTCACCACCAGCCCTCTT 60.768 55.000 0.00 0.00 0.00 2.85
2224 3207 1.079543 CTCCAGCACCGAGTTCCAG 60.080 63.158 0.00 0.00 0.00 3.86
2359 3342 1.229336 CTCCACCACCTCACCCTCT 60.229 63.158 0.00 0.00 0.00 3.69
2389 3372 1.674057 CCACCGCACCTTCTTCTCT 59.326 57.895 0.00 0.00 0.00 3.10
2576 3585 3.064207 TGTTTGATGTTCGCAGGTAGTC 58.936 45.455 0.00 0.00 0.00 2.59
2578 3587 3.935203 AGATGTTTGATGTTCGCAGGTAG 59.065 43.478 0.00 0.00 0.00 3.18
2586 3596 6.595326 TGGACTGATACAGATGTTTGATGTTC 59.405 38.462 5.76 0.00 35.18 3.18
2624 3634 5.824624 TGCATCTTTTTCAGGCTTATCTAGG 59.175 40.000 0.00 0.00 0.00 3.02
2642 3655 4.011966 TGAGAATCACAAGTGTGCATCT 57.988 40.909 14.69 14.69 42.56 2.90
2662 3675 4.274214 TCATGTGCACTTTCTTCTCTGTTG 59.726 41.667 19.41 0.00 0.00 3.33
2665 3678 4.274214 TGTTCATGTGCACTTTCTTCTCTG 59.726 41.667 19.41 0.00 0.00 3.35
2730 3744 6.348213 GCGTACATGTGTATTTTTCAGACCTT 60.348 38.462 9.11 0.00 32.54 3.50
2732 3746 5.321516 GCGTACATGTGTATTTTTCAGACC 58.678 41.667 9.11 0.00 32.54 3.85
2736 3750 3.125487 CCCGCGTACATGTGTATTTTTCA 59.875 43.478 9.11 0.00 32.54 2.69
2737 3751 3.125658 ACCCGCGTACATGTGTATTTTTC 59.874 43.478 9.11 0.00 32.54 2.29
2749 3763 6.513806 AATATACATACATACCCGCGTACA 57.486 37.500 4.92 0.00 0.00 2.90
2750 3764 7.028962 TGAAATATACATACATACCCGCGTAC 58.971 38.462 4.92 0.00 0.00 3.67
2751 3765 7.155655 TGAAATATACATACATACCCGCGTA 57.844 36.000 4.92 0.00 0.00 4.42
2752 3766 6.028146 TGAAATATACATACATACCCGCGT 57.972 37.500 4.92 0.00 0.00 6.01
2753 3767 7.534085 AATGAAATATACATACATACCCGCG 57.466 36.000 0.00 0.00 0.00 6.46
2754 3768 9.595823 AGTAATGAAATATACATACATACCCGC 57.404 33.333 0.00 0.00 0.00 6.13
2798 3812 5.128663 TCTGCACTTGTAAGCACTATCCATA 59.871 40.000 0.00 0.00 36.62 2.74
2799 3813 4.080919 TCTGCACTTGTAAGCACTATCCAT 60.081 41.667 0.00 0.00 36.62 3.41
2800 3814 3.260632 TCTGCACTTGTAAGCACTATCCA 59.739 43.478 0.00 0.00 36.62 3.41
2801 3815 3.861840 TCTGCACTTGTAAGCACTATCC 58.138 45.455 0.00 0.00 36.62 2.59
2802 3816 4.509600 GGATCTGCACTTGTAAGCACTATC 59.490 45.833 0.00 0.00 36.62 2.08
2821 3835 2.777692 TGGTCCTTGTAAGATGGGGATC 59.222 50.000 0.00 0.00 0.00 3.36
2838 3852 8.454106 GTGCTGATATGTAAATGGAATATGGTC 58.546 37.037 0.00 0.00 0.00 4.02
2854 3868 8.437360 TTTACTTATGTTCTGGTGCTGATATG 57.563 34.615 0.00 0.00 0.00 1.78
2861 3875 5.447279 CGGACATTTACTTATGTTCTGGTGC 60.447 44.000 0.00 0.00 38.80 5.01
2878 3892 0.037590 TTTAGCAGTGCCCGGACATT 59.962 50.000 12.58 0.00 0.00 2.71
2884 3898 1.429148 GGTCGATTTAGCAGTGCCCG 61.429 60.000 12.58 8.19 0.00 6.13
2890 3904 4.444720 GGATTCTTACGGTCGATTTAGCAG 59.555 45.833 0.00 0.00 0.00 4.24
2891 3905 4.098960 AGGATTCTTACGGTCGATTTAGCA 59.901 41.667 0.00 0.00 0.00 3.49
2897 3911 4.939052 AATCAGGATTCTTACGGTCGAT 57.061 40.909 0.00 0.00 0.00 3.59
2915 3929 6.916440 TGTTCATTGCCTCATATGCATAATC 58.084 36.000 11.13 0.00 38.76 1.75
2919 3933 5.303333 TGAATGTTCATTGCCTCATATGCAT 59.697 36.000 3.79 3.79 33.52 3.96
2956 3985 3.717400 TCTCGATGGAAGAGCATACAC 57.283 47.619 0.00 0.00 35.79 2.90
2971 4000 3.546218 CGATGCACGTCTATCTTTCTCGA 60.546 47.826 0.00 0.00 37.22 4.04
2973 4002 3.953766 TCGATGCACGTCTATCTTTCTC 58.046 45.455 8.22 0.00 43.13 2.87
2985 4014 2.209838 AGTGTTATCCTCGATGCACG 57.790 50.000 0.00 0.00 44.09 5.34
2986 4015 3.521560 TGAAGTGTTATCCTCGATGCAC 58.478 45.455 0.00 0.00 33.16 4.57
2987 4016 3.885724 TGAAGTGTTATCCTCGATGCA 57.114 42.857 0.00 0.00 0.00 3.96
2988 4017 4.870426 TCTTTGAAGTGTTATCCTCGATGC 59.130 41.667 0.00 0.00 0.00 3.91
2989 4018 5.869344 TGTCTTTGAAGTGTTATCCTCGATG 59.131 40.000 0.00 0.00 0.00 3.84
2990 4019 5.869888 GTGTCTTTGAAGTGTTATCCTCGAT 59.130 40.000 0.00 0.00 0.00 3.59
2991 4020 5.227908 GTGTCTTTGAAGTGTTATCCTCGA 58.772 41.667 0.00 0.00 0.00 4.04
3026 4055 5.636121 TCATCATGTCTTTGCAATGCTTTTC 59.364 36.000 6.82 0.00 0.00 2.29
3031 4068 4.980434 GGTATCATCATGTCTTTGCAATGC 59.020 41.667 0.00 0.00 0.00 3.56
3034 4071 6.778834 AATGGTATCATCATGTCTTTGCAA 57.221 33.333 0.00 0.00 32.24 4.08
3242 4282 5.527214 AGTTGTGTACCGTACATAGCGTATA 59.473 40.000 14.37 0.00 41.34 1.47
3256 4296 5.106830 GCATAAAGGTGTGTAGTTGTGTACC 60.107 44.000 0.00 0.00 0.00 3.34
3262 4302 6.086222 GTCAATGCATAAAGGTGTGTAGTTG 58.914 40.000 0.00 0.00 0.00 3.16
3375 4416 9.548208 GAGCTCAAGAAGTAATTACAATTTGTC 57.452 33.333 17.65 12.49 0.00 3.18
3382 4423 7.936847 TGAAAAGGAGCTCAAGAAGTAATTACA 59.063 33.333 17.19 0.00 0.00 2.41
3434 4476 6.112058 CCCTTTTTGATTGTTGACTTGGAAA 58.888 36.000 0.00 0.00 0.00 3.13
3437 4479 4.379652 CCCCTTTTTGATTGTTGACTTGG 58.620 43.478 0.00 0.00 0.00 3.61
3485 4527 6.465084 AGGATTAGTATCGGTTCCTATTTGC 58.535 40.000 0.00 0.00 35.07 3.68
3513 4555 4.119862 CTCCGTTCATCATCACCGTAATT 58.880 43.478 0.00 0.00 0.00 1.40
3554 4596 8.112822 TCCTTGGTAAACATCAAAGATGGATTA 58.887 33.333 11.29 7.43 0.00 1.75
3572 4614 3.791320 AGGAAGTCATGAGTCCTTGGTA 58.209 45.455 18.42 0.00 0.00 3.25
3644 4686 3.662247 GCACACCGCCTATCTACTATT 57.338 47.619 0.00 0.00 32.94 1.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.