Multiple sequence alignment - TraesCS2B01G011300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G011300 chr2B 100.000 3627 0 0 1 3627 6021757 6025383 0.000000e+00 6698.0
1 TraesCS2B01G011300 chr2B 90.666 2614 167 22 1070 3627 6120409 6123001 0.000000e+00 3404.0
2 TraesCS2B01G011300 chr2B 90.159 2134 115 21 783 2842 5786416 5784304 0.000000e+00 2689.0
3 TraesCS2B01G011300 chr2B 92.731 1582 58 20 417 1945 6004142 6005719 0.000000e+00 2231.0
4 TraesCS2B01G011300 chr2B 90.712 969 61 13 1942 2888 6005837 6006798 0.000000e+00 1264.0
5 TraesCS2B01G011300 chr2B 90.261 729 66 5 2901 3627 5784324 5783599 0.000000e+00 948.0
6 TraesCS2B01G011300 chr2B 91.721 616 42 3 1529 2136 6065048 6065662 0.000000e+00 846.0
7 TraesCS2B01G011300 chr2B 89.796 392 18 9 417 787 5786724 5786334 1.960000e-132 483.0
8 TraesCS2B01G011300 chr2B 89.286 392 18 10 417 787 6119681 6120069 1.520000e-128 470.0
9 TraesCS2B01G011300 chr2B 93.289 298 11 4 783 1072 6119990 6120286 7.190000e-117 431.0
10 TraesCS2B01G011300 chr2B 84.211 152 13 7 2830 2972 6006688 6006837 1.760000e-28 137.0
11 TraesCS2B01G011300 chr2B 94.186 86 5 0 543 628 6003716 6003801 8.170000e-27 132.0
12 TraesCS2B01G011300 chr2B 96.000 75 3 0 316 390 6003475 6003549 4.920000e-24 122.0
13 TraesCS2B01G011300 chr2B 97.778 45 0 1 386 429 6003572 6003616 3.880000e-10 76.8
14 TraesCS2B01G011300 chr2B 100.000 35 0 0 395 429 5787620 5787586 8.410000e-07 65.8
15 TraesCS2B01G011300 chr2B 100.000 29 0 0 2822 2850 6006766 6006794 2.000000e-03 54.7
16 TraesCS2B01G011300 chr2D 91.807 2136 102 21 781 2855 5425562 5423439 0.000000e+00 2907.0
17 TraesCS2B01G011300 chr2D 89.381 339 27 7 3288 3626 5423109 5422780 5.600000e-113 418.0
18 TraesCS2B01G011300 chr2D 81.116 466 52 21 1848 2309 5402013 5401580 1.250000e-89 340.0
19 TraesCS2B01G011300 chr2D 90.404 198 11 5 592 787 5425675 5425484 1.670000e-63 254.0
20 TraesCS2B01G011300 chr2A 91.238 2100 108 26 823 2855 4047833 4045743 0.000000e+00 2789.0
21 TraesCS2B01G011300 chr2A 83.774 265 38 4 1 263 693426500 693426761 2.800000e-61 246.0
22 TraesCS2B01G011300 chr2A 96.970 132 3 1 592 722 4047962 4047831 1.700000e-53 220.0
23 TraesCS2B01G011300 chr7D 92.188 256 16 2 12 263 29807273 29807018 3.440000e-95 359.0
24 TraesCS2B01G011300 chr7A 83.774 265 38 4 1 263 381205837 381205576 2.800000e-61 246.0
25 TraesCS2B01G011300 chr7A 92.500 120 9 0 144 263 285439990 285439871 4.810000e-39 172.0
26 TraesCS2B01G011300 chr7A 93.043 115 8 0 1 115 285440098 285439984 6.230000e-38 169.0
27 TraesCS2B01G011300 chr1A 83.774 265 38 4 1 263 82077903 82077642 2.800000e-61 246.0
28 TraesCS2B01G011300 chrUn 82.397 267 41 5 1 265 215030550 215030812 1.010000e-55 228.0
29 TraesCS2B01G011300 chr1B 82.397 267 40 6 1 263 681988226 681987963 3.640000e-55 226.0
30 TraesCS2B01G011300 chr6B 89.916 119 12 0 1 119 150775979 150775861 1.740000e-33 154.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G011300 chr2B 6021757 6025383 3626 False 6698.000000 6698 100.000000 1 3627 1 chr2B.!!$F1 3626
1 TraesCS2B01G011300 chr2B 6119681 6123001 3320 False 1435.000000 3404 91.080333 417 3627 3 chr2B.!!$F4 3210
2 TraesCS2B01G011300 chr2B 5783599 5787620 4021 True 1046.450000 2689 92.554000 395 3627 4 chr2B.!!$R1 3232
3 TraesCS2B01G011300 chr2B 6065048 6065662 614 False 846.000000 846 91.721000 1529 2136 1 chr2B.!!$F2 607
4 TraesCS2B01G011300 chr2B 6003475 6006837 3362 False 573.928571 2231 93.659714 316 2972 7 chr2B.!!$F3 2656
5 TraesCS2B01G011300 chr2D 5422780 5425675 2895 True 1193.000000 2907 90.530667 592 3626 3 chr2D.!!$R2 3034
6 TraesCS2B01G011300 chr2A 4045743 4047962 2219 True 1504.500000 2789 94.104000 592 2855 2 chr2A.!!$R1 2263

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
48 49 0.107410 TCGTGTGGTCCAAAACAGCT 60.107 50.0 0.00 0.00 0.00 4.24 F
307 308 0.108945 GCTCAAGGTGCTTCCATTGC 60.109 55.0 1.79 0.00 39.02 3.56 F
313 314 0.179119 GGTGCTTCCATTGCTCATGC 60.179 55.0 0.00 0.00 36.52 4.06 F
314 315 0.179119 GTGCTTCCATTGCTCATGCC 60.179 55.0 0.00 0.00 38.71 4.40 F
324 325 0.253044 TGCTCATGCCCTTAGTCCAC 59.747 55.0 0.00 0.00 38.71 4.02 F
2113 3341 0.175989 CCGGGAGAAGTTCTAGTGCC 59.824 60.0 5.09 2.47 0.00 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1162 2234 0.249322 GCCTTTGCGCGTAGAGGATA 60.249 55.000 32.82 0.0 0.00 2.59 R
1348 2420 0.794981 GCACGCACACAACGAAACAA 60.795 50.000 0.00 0.0 0.00 2.83 R
1508 2603 0.818296 AAGACGAGGAGGTCAATCCG 59.182 55.000 0.00 0.0 44.65 4.18 R
2113 3341 1.661341 GAGGTAGCATCAGCCTTGTG 58.339 55.000 0.00 0.0 43.56 3.33 R
2287 3517 2.307686 AGTTTATCCTTCTTTGGCGGGA 59.692 45.455 0.00 0.0 0.00 5.14 R
3436 4714 0.828762 ACTTGCCATGAAGCTGCCAA 60.829 50.000 0.00 0.0 0.00 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.525784 CTGCTCCAGCTATCCACCT 58.474 57.895 0.00 0.00 42.66 4.00
25 26 1.709578 CTGCTCCAGCTATCCACCTA 58.290 55.000 0.00 0.00 42.66 3.08
26 27 1.617850 CTGCTCCAGCTATCCACCTAG 59.382 57.143 0.00 0.00 42.66 3.02
27 28 0.972883 GCTCCAGCTATCCACCTAGG 59.027 60.000 7.41 7.41 38.21 3.02
28 29 0.972883 CTCCAGCTATCCACCTAGGC 59.027 60.000 9.30 0.00 37.29 3.93
29 30 0.563173 TCCAGCTATCCACCTAGGCT 59.437 55.000 9.30 0.00 37.29 4.58
30 31 0.972883 CCAGCTATCCACCTAGGCTC 59.027 60.000 9.30 0.00 37.29 4.70
31 32 0.600557 CAGCTATCCACCTAGGCTCG 59.399 60.000 9.30 0.00 37.29 5.03
32 33 0.186386 AGCTATCCACCTAGGCTCGT 59.814 55.000 9.30 0.00 37.29 4.18
33 34 0.315568 GCTATCCACCTAGGCTCGTG 59.684 60.000 9.30 7.49 37.29 4.35
34 35 1.693627 CTATCCACCTAGGCTCGTGT 58.306 55.000 9.30 0.00 37.29 4.49
35 36 1.338337 CTATCCACCTAGGCTCGTGTG 59.662 57.143 9.30 8.44 37.29 3.82
36 37 2.579201 CCACCTAGGCTCGTGTGG 59.421 66.667 9.30 13.49 42.01 4.17
37 38 2.283529 CCACCTAGGCTCGTGTGGT 61.284 63.158 9.30 6.17 42.61 4.16
38 39 1.215647 CACCTAGGCTCGTGTGGTC 59.784 63.158 9.30 0.00 0.00 4.02
39 40 1.982938 ACCTAGGCTCGTGTGGTCC 60.983 63.158 9.30 0.00 0.00 4.46
40 41 1.982395 CCTAGGCTCGTGTGGTCCA 60.982 63.158 0.00 0.00 0.00 4.02
41 42 1.541310 CCTAGGCTCGTGTGGTCCAA 61.541 60.000 0.00 0.00 0.00 3.53
42 43 0.320374 CTAGGCTCGTGTGGTCCAAA 59.680 55.000 0.00 0.00 0.00 3.28
43 44 0.759959 TAGGCTCGTGTGGTCCAAAA 59.240 50.000 0.00 0.00 0.00 2.44
44 45 0.818040 AGGCTCGTGTGGTCCAAAAC 60.818 55.000 0.00 0.00 0.00 2.43
45 46 1.098712 GGCTCGTGTGGTCCAAAACA 61.099 55.000 0.00 0.00 0.00 2.83
46 47 0.307760 GCTCGTGTGGTCCAAAACAG 59.692 55.000 0.00 0.00 0.00 3.16
47 48 0.307760 CTCGTGTGGTCCAAAACAGC 59.692 55.000 0.00 0.00 0.00 4.40
48 49 0.107410 TCGTGTGGTCCAAAACAGCT 60.107 50.000 0.00 0.00 0.00 4.24
49 50 0.307760 CGTGTGGTCCAAAACAGCTC 59.692 55.000 0.00 0.00 0.00 4.09
50 51 0.307760 GTGTGGTCCAAAACAGCTCG 59.692 55.000 0.00 0.00 0.00 5.03
51 52 0.179234 TGTGGTCCAAAACAGCTCGA 59.821 50.000 0.00 0.00 0.00 4.04
52 53 0.586802 GTGGTCCAAAACAGCTCGAC 59.413 55.000 0.00 0.00 0.00 4.20
53 54 0.878523 TGGTCCAAAACAGCTCGACG 60.879 55.000 0.00 0.00 0.00 5.12
54 55 0.878961 GGTCCAAAACAGCTCGACGT 60.879 55.000 0.00 0.00 0.00 4.34
55 56 0.232303 GTCCAAAACAGCTCGACGTG 59.768 55.000 0.00 0.00 0.00 4.49
56 57 1.082756 CCAAAACAGCTCGACGTGC 60.083 57.895 13.74 13.74 0.00 5.34
57 58 1.498865 CCAAAACAGCTCGACGTGCT 61.499 55.000 18.05 18.05 42.06 4.40
62 63 4.731612 AGCTCGACGTGCTGCCTG 62.732 66.667 22.39 0.00 39.56 4.85
63 64 4.724602 GCTCGACGTGCTGCCTGA 62.725 66.667 14.27 0.00 0.00 3.86
64 65 2.049156 CTCGACGTGCTGCCTGAA 60.049 61.111 0.00 0.00 0.00 3.02
65 66 2.049156 TCGACGTGCTGCCTGAAG 60.049 61.111 0.00 0.00 0.00 3.02
66 67 2.049156 CGACGTGCTGCCTGAAGA 60.049 61.111 0.00 0.00 0.00 2.87
67 68 1.446792 CGACGTGCTGCCTGAAGAT 60.447 57.895 0.00 0.00 0.00 2.40
68 69 1.016130 CGACGTGCTGCCTGAAGATT 61.016 55.000 0.00 0.00 0.00 2.40
69 70 1.735700 CGACGTGCTGCCTGAAGATTA 60.736 52.381 0.00 0.00 0.00 1.75
70 71 2.346803 GACGTGCTGCCTGAAGATTAA 58.653 47.619 0.00 0.00 0.00 1.40
71 72 2.076863 ACGTGCTGCCTGAAGATTAAC 58.923 47.619 0.00 0.00 0.00 2.01
72 73 2.076100 CGTGCTGCCTGAAGATTAACA 58.924 47.619 0.00 0.00 0.00 2.41
73 74 2.159653 CGTGCTGCCTGAAGATTAACAC 60.160 50.000 0.00 0.00 0.00 3.32
74 75 2.076100 TGCTGCCTGAAGATTAACACG 58.924 47.619 0.00 0.00 0.00 4.49
75 76 1.398390 GCTGCCTGAAGATTAACACGG 59.602 52.381 0.00 0.00 0.00 4.94
76 77 2.935238 GCTGCCTGAAGATTAACACGGA 60.935 50.000 0.00 0.00 0.00 4.69
77 78 3.535561 CTGCCTGAAGATTAACACGGAT 58.464 45.455 0.00 0.00 0.00 4.18
78 79 3.270027 TGCCTGAAGATTAACACGGATG 58.730 45.455 0.00 0.00 0.00 3.51
79 80 2.032178 GCCTGAAGATTAACACGGATGC 59.968 50.000 0.00 0.00 0.00 3.91
80 81 2.614057 CCTGAAGATTAACACGGATGCC 59.386 50.000 0.00 0.00 0.00 4.40
81 82 3.535561 CTGAAGATTAACACGGATGCCT 58.464 45.455 0.00 0.00 0.00 4.75
82 83 4.442893 CCTGAAGATTAACACGGATGCCTA 60.443 45.833 0.00 0.00 0.00 3.93
83 84 4.439057 TGAAGATTAACACGGATGCCTAC 58.561 43.478 0.00 0.00 0.00 3.18
84 85 4.081365 TGAAGATTAACACGGATGCCTACA 60.081 41.667 0.00 0.00 0.00 2.74
85 86 4.060038 AGATTAACACGGATGCCTACAG 57.940 45.455 0.00 0.00 0.00 2.74
86 87 3.704566 AGATTAACACGGATGCCTACAGA 59.295 43.478 0.00 0.00 0.00 3.41
87 88 3.520290 TTAACACGGATGCCTACAGAG 57.480 47.619 0.00 0.00 0.00 3.35
88 89 0.537188 AACACGGATGCCTACAGAGG 59.463 55.000 0.00 0.00 46.93 3.69
97 98 2.443016 CTACAGAGGAGGCCGGCT 60.443 66.667 28.56 12.77 0.00 5.52
98 99 2.442272 TACAGAGGAGGCCGGCTC 60.442 66.667 28.56 20.72 0.00 4.70
110 111 3.003173 CGGCTCCTCCCTGACCAA 61.003 66.667 0.00 0.00 0.00 3.67
111 112 2.592993 CGGCTCCTCCCTGACCAAA 61.593 63.158 0.00 0.00 0.00 3.28
112 113 1.301293 GGCTCCTCCCTGACCAAAG 59.699 63.158 0.00 0.00 0.00 2.77
113 114 1.201429 GGCTCCTCCCTGACCAAAGA 61.201 60.000 0.00 0.00 0.00 2.52
114 115 0.693049 GCTCCTCCCTGACCAAAGAA 59.307 55.000 0.00 0.00 0.00 2.52
115 116 1.339535 GCTCCTCCCTGACCAAAGAAG 60.340 57.143 0.00 0.00 0.00 2.85
116 117 0.693049 TCCTCCCTGACCAAAGAAGC 59.307 55.000 0.00 0.00 0.00 3.86
117 118 0.401738 CCTCCCTGACCAAAGAAGCA 59.598 55.000 0.00 0.00 0.00 3.91
118 119 1.202927 CCTCCCTGACCAAAGAAGCAA 60.203 52.381 0.00 0.00 0.00 3.91
119 120 2.586425 CTCCCTGACCAAAGAAGCAAA 58.414 47.619 0.00 0.00 0.00 3.68
120 121 2.958355 CTCCCTGACCAAAGAAGCAAAA 59.042 45.455 0.00 0.00 0.00 2.44
121 122 3.370104 TCCCTGACCAAAGAAGCAAAAA 58.630 40.909 0.00 0.00 0.00 1.94
122 123 3.384467 TCCCTGACCAAAGAAGCAAAAAG 59.616 43.478 0.00 0.00 0.00 2.27
123 124 3.493176 CCCTGACCAAAGAAGCAAAAAGG 60.493 47.826 0.00 0.00 0.00 3.11
124 125 3.126073 CTGACCAAAGAAGCAAAAAGGC 58.874 45.455 0.00 0.00 0.00 4.35
125 126 2.127251 GACCAAAGAAGCAAAAAGGCG 58.873 47.619 0.00 0.00 39.27 5.52
126 127 1.754226 ACCAAAGAAGCAAAAAGGCGA 59.246 42.857 0.00 0.00 39.27 5.54
127 128 2.223805 ACCAAAGAAGCAAAAAGGCGAG 60.224 45.455 0.00 0.00 39.27 5.03
128 129 2.034558 CCAAAGAAGCAAAAAGGCGAGA 59.965 45.455 0.00 0.00 39.27 4.04
129 130 3.305608 CCAAAGAAGCAAAAAGGCGAGAT 60.306 43.478 0.00 0.00 39.27 2.75
130 131 3.565905 AAGAAGCAAAAAGGCGAGATG 57.434 42.857 0.00 0.00 39.27 2.90
131 132 1.815003 AGAAGCAAAAAGGCGAGATGG 59.185 47.619 0.00 0.00 39.27 3.51
132 133 0.890683 AAGCAAAAAGGCGAGATGGG 59.109 50.000 0.00 0.00 39.27 4.00
133 134 0.967380 AGCAAAAAGGCGAGATGGGG 60.967 55.000 0.00 0.00 39.27 4.96
134 135 1.948721 GCAAAAAGGCGAGATGGGGG 61.949 60.000 0.00 0.00 0.00 5.40
151 152 3.667497 GGGGGAGAAAAGCAAAGAAAG 57.333 47.619 0.00 0.00 0.00 2.62
152 153 2.965831 GGGGGAGAAAAGCAAAGAAAGT 59.034 45.455 0.00 0.00 0.00 2.66
153 154 3.388024 GGGGGAGAAAAGCAAAGAAAGTT 59.612 43.478 0.00 0.00 0.00 2.66
154 155 4.587262 GGGGGAGAAAAGCAAAGAAAGTTA 59.413 41.667 0.00 0.00 0.00 2.24
155 156 5.069914 GGGGGAGAAAAGCAAAGAAAGTTAA 59.930 40.000 0.00 0.00 0.00 2.01
156 157 6.216569 GGGGAGAAAAGCAAAGAAAGTTAAG 58.783 40.000 0.00 0.00 0.00 1.85
157 158 5.692204 GGGAGAAAAGCAAAGAAAGTTAAGC 59.308 40.000 0.00 0.00 0.00 3.09
158 159 6.273071 GGAGAAAAGCAAAGAAAGTTAAGCA 58.727 36.000 0.00 0.00 0.00 3.91
159 160 6.925718 GGAGAAAAGCAAAGAAAGTTAAGCAT 59.074 34.615 0.00 0.00 0.00 3.79
160 161 7.095899 GGAGAAAAGCAAAGAAAGTTAAGCATG 60.096 37.037 0.00 0.00 0.00 4.06
161 162 5.912360 AAAGCAAAGAAAGTTAAGCATGC 57.088 34.783 10.51 10.51 0.00 4.06
162 163 4.589216 AGCAAAGAAAGTTAAGCATGCA 57.411 36.364 21.98 0.00 35.11 3.96
163 164 4.301628 AGCAAAGAAAGTTAAGCATGCAC 58.698 39.130 21.98 9.67 35.11 4.57
164 165 4.038402 AGCAAAGAAAGTTAAGCATGCACT 59.962 37.500 21.98 12.09 35.11 4.40
165 166 4.149396 GCAAAGAAAGTTAAGCATGCACTG 59.851 41.667 21.98 3.93 33.00 3.66
166 167 4.510038 AAGAAAGTTAAGCATGCACTGG 57.490 40.909 21.98 0.00 0.00 4.00
167 168 3.490348 AGAAAGTTAAGCATGCACTGGT 58.510 40.909 21.98 6.64 37.10 4.00
168 169 4.651778 AGAAAGTTAAGCATGCACTGGTA 58.348 39.130 21.98 0.69 33.48 3.25
169 170 5.256474 AGAAAGTTAAGCATGCACTGGTAT 58.744 37.500 21.98 0.33 33.48 2.73
170 171 4.970662 AAGTTAAGCATGCACTGGTATG 57.029 40.909 21.98 0.00 39.78 2.39
171 172 3.282021 AGTTAAGCATGCACTGGTATGG 58.718 45.455 21.98 0.00 37.56 2.74
172 173 3.054434 AGTTAAGCATGCACTGGTATGGA 60.054 43.478 21.98 0.00 37.56 3.41
173 174 1.755179 AAGCATGCACTGGTATGGAC 58.245 50.000 21.98 0.00 37.56 4.02
174 175 0.914644 AGCATGCACTGGTATGGACT 59.085 50.000 21.98 0.00 37.56 3.85
175 176 2.118679 AGCATGCACTGGTATGGACTA 58.881 47.619 21.98 0.00 37.56 2.59
176 177 2.103771 AGCATGCACTGGTATGGACTAG 59.896 50.000 21.98 0.00 39.95 2.57
177 178 2.808202 GCATGCACTGGTATGGACTAGG 60.808 54.545 14.21 0.00 38.45 3.02
178 179 0.830648 TGCACTGGTATGGACTAGGC 59.169 55.000 0.00 0.00 38.45 3.93
179 180 0.830648 GCACTGGTATGGACTAGGCA 59.169 55.000 0.00 0.00 38.45 4.75
180 181 1.417890 GCACTGGTATGGACTAGGCAT 59.582 52.381 0.00 0.00 38.45 4.40
181 182 2.808202 GCACTGGTATGGACTAGGCATG 60.808 54.545 0.00 0.00 38.45 4.06
182 183 1.417890 ACTGGTATGGACTAGGCATGC 59.582 52.381 9.90 9.90 38.45 4.06
183 184 1.696336 CTGGTATGGACTAGGCATGCT 59.304 52.381 18.92 6.26 30.70 3.79
184 185 2.105477 CTGGTATGGACTAGGCATGCTT 59.895 50.000 18.92 13.45 30.70 3.91
185 186 2.509548 TGGTATGGACTAGGCATGCTTT 59.490 45.455 18.92 9.04 0.00 3.51
186 187 3.142174 GGTATGGACTAGGCATGCTTTC 58.858 50.000 18.92 5.23 0.00 2.62
187 188 3.433598 GGTATGGACTAGGCATGCTTTCA 60.434 47.826 18.92 7.40 0.00 2.69
188 189 2.877097 TGGACTAGGCATGCTTTCAA 57.123 45.000 18.92 0.00 0.00 2.69
189 190 3.370840 TGGACTAGGCATGCTTTCAAT 57.629 42.857 18.92 0.00 0.00 2.57
190 191 3.282021 TGGACTAGGCATGCTTTCAATC 58.718 45.455 18.92 8.01 0.00 2.67
191 192 2.620585 GGACTAGGCATGCTTTCAATCC 59.379 50.000 18.92 13.13 0.00 3.01
192 193 3.282021 GACTAGGCATGCTTTCAATCCA 58.718 45.455 18.92 0.00 0.00 3.41
193 194 3.887716 GACTAGGCATGCTTTCAATCCAT 59.112 43.478 18.92 0.00 0.00 3.41
194 195 3.635373 ACTAGGCATGCTTTCAATCCATG 59.365 43.478 18.92 0.00 39.38 3.66
197 198 2.855660 CATGCTTTCAATCCATGCGA 57.144 45.000 0.00 0.00 31.16 5.10
198 199 3.364889 CATGCTTTCAATCCATGCGAT 57.635 42.857 0.00 0.00 31.16 4.58
199 200 2.855660 TGCTTTCAATCCATGCGATG 57.144 45.000 0.00 0.00 0.00 3.84
200 201 2.367486 TGCTTTCAATCCATGCGATGA 58.633 42.857 0.00 0.00 0.00 2.92
201 202 2.754002 TGCTTTCAATCCATGCGATGAA 59.246 40.909 0.00 0.00 0.00 2.57
202 203 3.193056 TGCTTTCAATCCATGCGATGAAA 59.807 39.130 13.73 13.73 32.22 2.69
203 204 4.175516 GCTTTCAATCCATGCGATGAAAA 58.824 39.130 14.72 9.68 32.50 2.29
204 205 4.266976 GCTTTCAATCCATGCGATGAAAAG 59.733 41.667 14.72 15.87 36.88 2.27
205 206 5.641783 TTTCAATCCATGCGATGAAAAGA 57.358 34.783 12.67 0.00 31.15 2.52
206 207 5.641783 TTCAATCCATGCGATGAAAAGAA 57.358 34.783 0.00 0.00 0.00 2.52
207 208 5.641783 TCAATCCATGCGATGAAAAGAAA 57.358 34.783 0.00 0.00 0.00 2.52
208 209 5.401550 TCAATCCATGCGATGAAAAGAAAC 58.598 37.500 0.00 0.00 0.00 2.78
209 210 3.469899 TCCATGCGATGAAAAGAAACG 57.530 42.857 0.00 0.00 0.00 3.60
210 211 2.161410 TCCATGCGATGAAAAGAAACGG 59.839 45.455 0.00 0.00 0.00 4.44
211 212 2.518949 CATGCGATGAAAAGAAACGGG 58.481 47.619 0.00 0.00 0.00 5.28
212 213 1.885560 TGCGATGAAAAGAAACGGGA 58.114 45.000 0.00 0.00 0.00 5.14
213 214 2.222886 TGCGATGAAAAGAAACGGGAA 58.777 42.857 0.00 0.00 0.00 3.97
214 215 2.225491 TGCGATGAAAAGAAACGGGAAG 59.775 45.455 0.00 0.00 0.00 3.46
215 216 2.482721 GCGATGAAAAGAAACGGGAAGA 59.517 45.455 0.00 0.00 0.00 2.87
216 217 3.424962 GCGATGAAAAGAAACGGGAAGAG 60.425 47.826 0.00 0.00 0.00 2.85
217 218 3.994392 CGATGAAAAGAAACGGGAAGAGA 59.006 43.478 0.00 0.00 0.00 3.10
218 219 4.092091 CGATGAAAAGAAACGGGAAGAGAG 59.908 45.833 0.00 0.00 0.00 3.20
219 220 4.682778 TGAAAAGAAACGGGAAGAGAGA 57.317 40.909 0.00 0.00 0.00 3.10
220 221 4.632153 TGAAAAGAAACGGGAAGAGAGAG 58.368 43.478 0.00 0.00 0.00 3.20
221 222 4.344102 TGAAAAGAAACGGGAAGAGAGAGA 59.656 41.667 0.00 0.00 0.00 3.10
222 223 4.957684 AAAGAAACGGGAAGAGAGAGAA 57.042 40.909 0.00 0.00 0.00 2.87
223 224 4.957684 AAGAAACGGGAAGAGAGAGAAA 57.042 40.909 0.00 0.00 0.00 2.52
224 225 4.260139 AGAAACGGGAAGAGAGAGAAAC 57.740 45.455 0.00 0.00 0.00 2.78
225 226 3.007074 AGAAACGGGAAGAGAGAGAAACC 59.993 47.826 0.00 0.00 0.00 3.27
226 227 0.889306 ACGGGAAGAGAGAGAAACCG 59.111 55.000 0.00 0.00 44.86 4.44
227 228 0.889306 CGGGAAGAGAGAGAAACCGT 59.111 55.000 0.00 0.00 35.47 4.83
228 229 1.402984 CGGGAAGAGAGAGAAACCGTG 60.403 57.143 0.00 0.00 35.47 4.94
229 230 1.066787 GGGAAGAGAGAGAAACCGTGG 60.067 57.143 0.00 0.00 0.00 4.94
230 231 1.893801 GGAAGAGAGAGAAACCGTGGA 59.106 52.381 0.00 0.00 0.00 4.02
231 232 2.352912 GGAAGAGAGAGAAACCGTGGAC 60.353 54.545 0.00 0.00 0.00 4.02
232 233 1.258676 AGAGAGAGAAACCGTGGACC 58.741 55.000 0.00 0.00 0.00 4.46
233 234 0.966920 GAGAGAGAAACCGTGGACCA 59.033 55.000 0.00 0.00 0.00 4.02
234 235 1.550976 GAGAGAGAAACCGTGGACCAT 59.449 52.381 0.00 0.00 0.00 3.55
235 236 2.758979 GAGAGAGAAACCGTGGACCATA 59.241 50.000 0.00 0.00 0.00 2.74
236 237 2.761208 AGAGAGAAACCGTGGACCATAG 59.239 50.000 0.00 0.00 0.00 2.23
237 238 2.496470 GAGAGAAACCGTGGACCATAGT 59.504 50.000 0.00 0.00 0.00 2.12
238 239 2.233922 AGAGAAACCGTGGACCATAGTG 59.766 50.000 0.00 0.00 0.00 2.74
239 240 2.232941 GAGAAACCGTGGACCATAGTGA 59.767 50.000 0.00 0.00 0.00 3.41
240 241 2.233922 AGAAACCGTGGACCATAGTGAG 59.766 50.000 0.00 0.00 0.00 3.51
241 242 0.902531 AACCGTGGACCATAGTGAGG 59.097 55.000 0.00 0.00 0.00 3.86
242 243 1.144057 CCGTGGACCATAGTGAGGC 59.856 63.158 0.00 0.00 0.00 4.70
243 244 1.613317 CCGTGGACCATAGTGAGGCA 61.613 60.000 0.00 0.00 0.00 4.75
244 245 0.179100 CGTGGACCATAGTGAGGCAG 60.179 60.000 0.00 0.00 0.00 4.85
245 246 0.462759 GTGGACCATAGTGAGGCAGC 60.463 60.000 0.00 0.00 0.00 5.25
246 247 0.618680 TGGACCATAGTGAGGCAGCT 60.619 55.000 0.00 0.00 0.00 4.24
247 248 1.342975 TGGACCATAGTGAGGCAGCTA 60.343 52.381 0.00 0.00 0.00 3.32
248 249 1.974236 GGACCATAGTGAGGCAGCTAT 59.026 52.381 0.00 0.00 0.00 2.97
249 250 2.370189 GGACCATAGTGAGGCAGCTATT 59.630 50.000 0.00 0.00 0.00 1.73
250 251 3.397482 GACCATAGTGAGGCAGCTATTG 58.603 50.000 0.00 0.00 0.00 1.90
262 263 3.598019 CAGCTATTGCATTGGGTGTTT 57.402 42.857 13.90 0.00 42.74 2.83
263 264 3.929094 CAGCTATTGCATTGGGTGTTTT 58.071 40.909 13.90 0.00 42.74 2.43
264 265 5.070770 CAGCTATTGCATTGGGTGTTTTA 57.929 39.130 13.90 0.00 42.74 1.52
265 266 5.477510 CAGCTATTGCATTGGGTGTTTTAA 58.522 37.500 13.90 0.00 42.74 1.52
266 267 5.577945 CAGCTATTGCATTGGGTGTTTTAAG 59.422 40.000 13.90 0.00 42.74 1.85
267 268 4.869861 GCTATTGCATTGGGTGTTTTAAGG 59.130 41.667 0.00 0.00 39.41 2.69
268 269 4.972751 ATTGCATTGGGTGTTTTAAGGT 57.027 36.364 0.00 0.00 0.00 3.50
269 270 6.350612 GCTATTGCATTGGGTGTTTTAAGGTA 60.351 38.462 0.00 0.00 39.41 3.08
270 271 4.857509 TGCATTGGGTGTTTTAAGGTAC 57.142 40.909 0.00 0.00 0.00 3.34
290 291 8.688747 AGGTACTTTATCGTAATACTACTGCT 57.311 34.615 0.00 0.00 27.25 4.24
291 292 8.782144 AGGTACTTTATCGTAATACTACTGCTC 58.218 37.037 0.00 0.00 27.25 4.26
292 293 8.562892 GGTACTTTATCGTAATACTACTGCTCA 58.437 37.037 0.00 0.00 0.00 4.26
293 294 9.941664 GTACTTTATCGTAATACTACTGCTCAA 57.058 33.333 0.00 0.00 0.00 3.02
295 296 8.136165 ACTTTATCGTAATACTACTGCTCAAGG 58.864 37.037 0.00 0.00 0.00 3.61
296 297 7.578310 TTATCGTAATACTACTGCTCAAGGT 57.422 36.000 0.00 0.00 0.00 3.50
297 298 5.244785 TCGTAATACTACTGCTCAAGGTG 57.755 43.478 0.00 0.00 0.00 4.00
298 299 3.797256 CGTAATACTACTGCTCAAGGTGC 59.203 47.826 0.00 0.00 0.00 5.01
299 300 4.440250 CGTAATACTACTGCTCAAGGTGCT 60.440 45.833 0.00 0.00 0.00 4.40
300 301 4.559862 AATACTACTGCTCAAGGTGCTT 57.440 40.909 0.00 0.00 0.00 3.91
301 302 2.464157 ACTACTGCTCAAGGTGCTTC 57.536 50.000 0.00 0.00 0.00 3.86
302 303 1.002544 ACTACTGCTCAAGGTGCTTCC 59.997 52.381 0.00 0.00 0.00 3.46
303 304 1.002430 CTACTGCTCAAGGTGCTTCCA 59.998 52.381 1.79 0.00 39.02 3.53
304 305 0.403271 ACTGCTCAAGGTGCTTCCAT 59.597 50.000 1.79 0.00 39.02 3.41
305 306 1.202976 ACTGCTCAAGGTGCTTCCATT 60.203 47.619 1.79 0.00 39.02 3.16
306 307 1.201647 CTGCTCAAGGTGCTTCCATTG 59.798 52.381 1.79 3.87 39.02 2.82
307 308 0.108945 GCTCAAGGTGCTTCCATTGC 60.109 55.000 1.79 0.00 39.02 3.56
308 309 1.542492 CTCAAGGTGCTTCCATTGCT 58.458 50.000 1.79 0.00 39.02 3.91
309 310 1.471684 CTCAAGGTGCTTCCATTGCTC 59.528 52.381 1.79 0.00 39.02 4.26
310 311 1.202915 TCAAGGTGCTTCCATTGCTCA 60.203 47.619 1.79 0.00 39.02 4.26
311 312 1.822990 CAAGGTGCTTCCATTGCTCAT 59.177 47.619 1.79 0.00 39.02 2.90
312 313 1.471119 AGGTGCTTCCATTGCTCATG 58.529 50.000 0.00 0.00 39.02 3.07
313 314 0.179119 GGTGCTTCCATTGCTCATGC 60.179 55.000 0.00 0.00 36.52 4.06
314 315 0.179119 GTGCTTCCATTGCTCATGCC 60.179 55.000 0.00 0.00 38.71 4.40
324 325 0.253044 TGCTCATGCCCTTAGTCCAC 59.747 55.000 0.00 0.00 38.71 4.02
331 332 1.282382 GCCCTTAGTCCACCCTACAA 58.718 55.000 0.00 0.00 0.00 2.41
366 367 4.451900 TCTTCCCTGTTGACTTCTTTGAC 58.548 43.478 0.00 0.00 0.00 3.18
431 1336 1.005630 GTTCTCACTGCTGCCGTCT 60.006 57.895 0.00 0.00 0.00 4.18
466 1371 1.079127 CGTCTTCGTCTTGGCCCAT 60.079 57.895 0.00 0.00 0.00 4.00
486 1391 4.926238 CCATAGCTCAGATGTATTTCGTCC 59.074 45.833 0.00 0.00 32.85 4.79
533 1438 5.977725 GTGTCTCTGTCGCAGCTAATAAATA 59.022 40.000 0.00 0.00 0.00 1.40
569 1493 4.634883 CAGATAAAGAGCTCATGTGTGCTT 59.365 41.667 17.77 0.00 43.90 3.91
571 1495 2.267174 AAGAGCTCATGTGTGCTTGT 57.733 45.000 17.77 0.29 43.90 3.16
618 1542 2.328099 CCACTTCTTCACCAGCCGC 61.328 63.158 0.00 0.00 0.00 6.53
1162 2234 5.105146 AGTTTGTAAGAGATCTGAAGGCGAT 60.105 40.000 0.00 0.00 0.00 4.58
1261 2333 2.227388 CTGCACCTGGTTTCATGTCTTC 59.773 50.000 0.00 0.00 0.00 2.87
1276 2348 4.778415 TTCTGCTCGAGCGACGGC 62.778 66.667 30.75 9.09 45.83 5.68
1322 2394 3.588210 TTTCTTTCTCTTTTCCCCGGT 57.412 42.857 0.00 0.00 0.00 5.28
1389 2484 1.610086 CAGGGATTTGGGCAAGGCA 60.610 57.895 0.00 0.00 0.00 4.75
1429 2524 0.710588 TCCTGAGCTGGGAGGTCTTA 59.289 55.000 0.00 0.00 42.83 2.10
1434 2529 0.615850 AGCTGGGAGGTCTTAAGCAC 59.384 55.000 0.00 0.00 36.32 4.40
1508 2603 1.732259 GCTGCATGTACACTACACCAC 59.268 52.381 0.00 0.00 42.23 4.16
1743 2838 6.486248 TGAAGAAATGATAATTAGCGTGCAC 58.514 36.000 6.82 6.82 0.00 4.57
1781 2883 4.447138 AAACCACCAATACAGACAAGGA 57.553 40.909 0.00 0.00 0.00 3.36
1798 2900 6.211584 AGACAAGGAGCAATCTTCTAAGTACA 59.788 38.462 0.00 0.00 0.00 2.90
1920 3022 5.621193 ACTTGGCTGAAATGTTAGTAGTGT 58.379 37.500 0.00 0.00 0.00 3.55
1971 3194 0.604780 CCCAGTCACTTGCACTGAGG 60.605 60.000 2.98 0.00 43.54 3.86
1992 3219 7.541162 TGAGGCAACATCTTTCTTATTCATTG 58.459 34.615 0.00 0.00 41.41 2.82
2113 3341 0.175989 CCGGGAGAAGTTCTAGTGCC 59.824 60.000 5.09 2.47 0.00 5.01
2200 3430 6.992063 ATCTGAAAATTTGCGTCTAGACAT 57.008 33.333 22.37 5.69 0.00 3.06
2309 3539 3.520317 TCCCGCCAAAGAAGGATAAACTA 59.480 43.478 0.00 0.00 0.00 2.24
2314 3544 5.277345 CGCCAAAGAAGGATAAACTATTCCG 60.277 44.000 0.00 0.00 0.00 4.30
2350 3580 7.287061 TGGTACACCCAATATCTTTTCATAGG 58.713 38.462 0.00 0.00 41.50 2.57
2442 3679 9.762933 GATGGCATATGAATTTTAGGCTAAAAA 57.237 29.630 29.98 17.85 40.62 1.94
2510 3759 3.885724 TGCGATCTACACCTTTGATGA 57.114 42.857 0.00 0.00 0.00 2.92
2611 3871 4.445448 GCCTTCATCATCCAGGATACACTT 60.445 45.833 0.00 0.00 41.41 3.16
2793 4053 5.516339 CCGCAAAATGAAATGAGTATGAACC 59.484 40.000 0.00 0.00 0.00 3.62
2889 4149 7.532571 CAGTGACATGTGAACATATGAAATGT 58.467 34.615 10.38 10.66 34.26 2.71
3010 4271 3.035576 CTCCAGCTCGACGTGCGTA 62.036 63.158 15.41 5.24 41.80 4.42
3013 4274 1.076533 CCAGCTCGACGTGCGTAATT 61.077 55.000 15.41 0.00 41.80 1.40
3014 4275 0.294887 CAGCTCGACGTGCGTAATTC 59.705 55.000 15.41 0.00 41.80 2.17
3091 4369 5.106277 CCACCCGAAACTTTAGGATTCTTTC 60.106 44.000 2.37 0.00 0.00 2.62
3112 4390 5.524511 TCAATAGGTTCATTCGTGTTTCG 57.475 39.130 0.00 0.00 41.41 3.46
3203 4481 3.378427 GTGGCTCCACTTTCAATACCATC 59.622 47.826 11.61 0.00 43.12 3.51
3238 4516 5.573219 TGAAGACCCACATTCATTGAATCT 58.427 37.500 8.95 0.94 30.67 2.40
3270 4548 4.579340 TCGAGCAAACTAGAATACGAGGAT 59.421 41.667 0.00 0.00 0.00 3.24
3341 4619 6.703319 TGAATGAGTCGTAAAATCAGGGTTA 58.297 36.000 0.00 0.00 0.00 2.85
3385 4663 2.757314 TGTGTCAAAAACAGCACCATCA 59.243 40.909 0.00 0.00 38.97 3.07
3432 4710 1.077429 GGCGGGGATTCTGAGCTTT 60.077 57.895 0.00 0.00 0.00 3.51
3446 4724 1.373873 GCTTTGGCTTGGCAGCTTC 60.374 57.895 8.45 0.00 46.44 3.86
3448 4726 0.606604 CTTTGGCTTGGCAGCTTCAT 59.393 50.000 8.45 0.00 46.44 2.57
3482 4760 0.103208 CGCGAGCTAGGGAAATGAGT 59.897 55.000 0.00 0.00 0.00 3.41
3511 4789 3.203040 CAGTGGGTTTAAGGATGGGATCT 59.797 47.826 0.00 0.00 0.00 2.75
3573 4858 1.134965 CACATCGAGAGGTTGGGAGTC 60.135 57.143 0.00 0.00 0.00 3.36
3597 4882 1.891449 CATGTGTGGGTGTCGTGCA 60.891 57.895 0.00 0.00 0.00 4.57
3607 4892 2.813908 GTCGTGCATCGGTGGGAC 60.814 66.667 0.00 0.00 40.32 4.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 1.617850 CTAGGTGGATAGCTGGAGCAG 59.382 57.143 0.00 0.00 45.16 4.24
7 8 1.709578 CTAGGTGGATAGCTGGAGCA 58.290 55.000 0.00 0.00 45.16 4.26
8 9 0.972883 CCTAGGTGGATAGCTGGAGC 59.027 60.000 0.00 0.00 35.18 4.70
9 10 0.972883 GCCTAGGTGGATAGCTGGAG 59.027 60.000 11.31 0.00 35.18 3.86
10 11 0.563173 AGCCTAGGTGGATAGCTGGA 59.437 55.000 11.31 0.00 35.18 3.86
11 12 0.972883 GAGCCTAGGTGGATAGCTGG 59.027 60.000 11.31 0.00 38.35 4.85
12 13 0.600557 CGAGCCTAGGTGGATAGCTG 59.399 60.000 11.31 0.00 38.35 4.24
13 14 0.186386 ACGAGCCTAGGTGGATAGCT 59.814 55.000 11.31 0.00 38.35 3.32
14 15 0.315568 CACGAGCCTAGGTGGATAGC 59.684 60.000 11.31 0.00 38.35 2.97
15 16 1.338337 CACACGAGCCTAGGTGGATAG 59.662 57.143 11.31 0.00 38.46 2.08
16 17 1.399714 CACACGAGCCTAGGTGGATA 58.600 55.000 11.31 0.00 38.46 2.59
17 18 2.202866 CACACGAGCCTAGGTGGAT 58.797 57.895 11.31 0.00 38.46 3.41
18 19 3.694746 CACACGAGCCTAGGTGGA 58.305 61.111 11.31 0.00 38.46 4.02
19 20 2.579201 CCACACGAGCCTAGGTGG 59.421 66.667 11.31 4.97 44.17 4.61
20 21 1.215647 GACCACACGAGCCTAGGTG 59.784 63.158 11.31 2.84 39.98 4.00
21 22 1.982938 GGACCACACGAGCCTAGGT 60.983 63.158 11.31 0.00 34.76 3.08
22 23 1.541310 TTGGACCACACGAGCCTAGG 61.541 60.000 3.67 3.67 0.00 3.02
23 24 0.320374 TTTGGACCACACGAGCCTAG 59.680 55.000 0.00 0.00 0.00 3.02
24 25 0.759959 TTTTGGACCACACGAGCCTA 59.240 50.000 0.00 0.00 0.00 3.93
25 26 0.818040 GTTTTGGACCACACGAGCCT 60.818 55.000 0.00 0.00 0.00 4.58
26 27 1.098712 TGTTTTGGACCACACGAGCC 61.099 55.000 0.00 0.00 0.00 4.70
27 28 0.307760 CTGTTTTGGACCACACGAGC 59.692 55.000 0.00 0.00 0.00 5.03
28 29 0.307760 GCTGTTTTGGACCACACGAG 59.692 55.000 0.00 0.00 0.00 4.18
29 30 0.107410 AGCTGTTTTGGACCACACGA 60.107 50.000 0.00 0.00 0.00 4.35
30 31 0.307760 GAGCTGTTTTGGACCACACG 59.692 55.000 0.00 0.00 0.00 4.49
31 32 0.307760 CGAGCTGTTTTGGACCACAC 59.692 55.000 0.00 0.00 0.00 3.82
32 33 0.179234 TCGAGCTGTTTTGGACCACA 59.821 50.000 0.00 0.00 0.00 4.17
33 34 0.586802 GTCGAGCTGTTTTGGACCAC 59.413 55.000 0.00 0.00 0.00 4.16
34 35 0.878523 CGTCGAGCTGTTTTGGACCA 60.879 55.000 0.00 0.00 0.00 4.02
35 36 0.878961 ACGTCGAGCTGTTTTGGACC 60.879 55.000 0.00 0.00 0.00 4.46
36 37 0.232303 CACGTCGAGCTGTTTTGGAC 59.768 55.000 0.00 0.00 0.00 4.02
37 38 1.495584 GCACGTCGAGCTGTTTTGGA 61.496 55.000 7.45 0.00 0.00 3.53
38 39 1.082756 GCACGTCGAGCTGTTTTGG 60.083 57.895 7.45 0.00 0.00 3.28
39 40 1.934463 AGCACGTCGAGCTGTTTTG 59.066 52.632 16.58 0.00 41.61 2.44
40 41 4.438346 AGCACGTCGAGCTGTTTT 57.562 50.000 16.58 0.00 41.61 2.43
45 46 4.731612 CAGGCAGCACGTCGAGCT 62.732 66.667 11.60 11.60 44.62 4.09
46 47 4.724602 TCAGGCAGCACGTCGAGC 62.725 66.667 6.54 6.54 0.00 5.03
47 48 2.049156 TTCAGGCAGCACGTCGAG 60.049 61.111 0.00 0.00 0.00 4.04
48 49 1.877576 ATCTTCAGGCAGCACGTCGA 61.878 55.000 0.00 0.00 0.00 4.20
49 50 1.016130 AATCTTCAGGCAGCACGTCG 61.016 55.000 0.00 0.00 0.00 5.12
50 51 2.010145 TAATCTTCAGGCAGCACGTC 57.990 50.000 0.00 0.00 0.00 4.34
51 52 2.076863 GTTAATCTTCAGGCAGCACGT 58.923 47.619 0.00 0.00 0.00 4.49
52 53 2.076100 TGTTAATCTTCAGGCAGCACG 58.924 47.619 0.00 0.00 0.00 5.34
53 54 2.159653 CGTGTTAATCTTCAGGCAGCAC 60.160 50.000 0.00 0.00 0.00 4.40
54 55 2.076100 CGTGTTAATCTTCAGGCAGCA 58.924 47.619 0.00 0.00 0.00 4.41
55 56 1.398390 CCGTGTTAATCTTCAGGCAGC 59.602 52.381 0.00 0.00 0.00 5.25
56 57 2.972625 TCCGTGTTAATCTTCAGGCAG 58.027 47.619 0.00 0.00 0.00 4.85
57 58 3.270027 CATCCGTGTTAATCTTCAGGCA 58.730 45.455 0.00 0.00 0.00 4.75
58 59 2.032178 GCATCCGTGTTAATCTTCAGGC 59.968 50.000 0.00 0.00 0.00 4.85
59 60 2.614057 GGCATCCGTGTTAATCTTCAGG 59.386 50.000 0.00 0.00 0.00 3.86
60 61 3.535561 AGGCATCCGTGTTAATCTTCAG 58.464 45.455 0.00 0.00 0.00 3.02
61 62 3.627395 AGGCATCCGTGTTAATCTTCA 57.373 42.857 0.00 0.00 0.00 3.02
62 63 4.439057 TGTAGGCATCCGTGTTAATCTTC 58.561 43.478 0.00 0.00 0.00 2.87
63 64 4.161565 TCTGTAGGCATCCGTGTTAATCTT 59.838 41.667 0.00 0.00 0.00 2.40
64 65 3.704566 TCTGTAGGCATCCGTGTTAATCT 59.295 43.478 0.00 0.00 0.00 2.40
65 66 4.051922 CTCTGTAGGCATCCGTGTTAATC 58.948 47.826 0.00 0.00 0.00 1.75
66 67 3.181465 CCTCTGTAGGCATCCGTGTTAAT 60.181 47.826 0.00 0.00 35.64 1.40
67 68 2.167693 CCTCTGTAGGCATCCGTGTTAA 59.832 50.000 0.00 0.00 35.64 2.01
68 69 1.754803 CCTCTGTAGGCATCCGTGTTA 59.245 52.381 0.00 0.00 35.64 2.41
69 70 0.537188 CCTCTGTAGGCATCCGTGTT 59.463 55.000 0.00 0.00 35.64 3.32
70 71 0.324368 TCCTCTGTAGGCATCCGTGT 60.324 55.000 0.00 0.00 43.31 4.49
71 72 0.387202 CTCCTCTGTAGGCATCCGTG 59.613 60.000 0.00 0.00 43.31 4.94
72 73 0.757188 CCTCCTCTGTAGGCATCCGT 60.757 60.000 0.00 0.00 43.31 4.69
73 74 2.045280 CCTCCTCTGTAGGCATCCG 58.955 63.158 0.00 0.00 43.31 4.18
79 80 3.541713 GCCGGCCTCCTCTGTAGG 61.542 72.222 18.11 0.00 45.21 3.18
80 81 2.443016 AGCCGGCCTCCTCTGTAG 60.443 66.667 26.15 0.00 0.00 2.74
81 82 2.442272 GAGCCGGCCTCCTCTGTA 60.442 66.667 26.15 0.00 34.35 2.74
93 94 2.527951 CTTTGGTCAGGGAGGAGCCG 62.528 65.000 0.00 0.00 37.63 5.52
94 95 1.201429 TCTTTGGTCAGGGAGGAGCC 61.201 60.000 0.00 0.00 34.46 4.70
95 96 0.693049 TTCTTTGGTCAGGGAGGAGC 59.307 55.000 0.00 0.00 35.89 4.70
96 97 1.339535 GCTTCTTTGGTCAGGGAGGAG 60.340 57.143 0.00 0.00 0.00 3.69
97 98 0.693049 GCTTCTTTGGTCAGGGAGGA 59.307 55.000 0.00 0.00 0.00 3.71
98 99 0.401738 TGCTTCTTTGGTCAGGGAGG 59.598 55.000 0.00 0.00 0.00 4.30
99 100 2.276732 TTGCTTCTTTGGTCAGGGAG 57.723 50.000 0.00 0.00 0.00 4.30
100 101 2.746279 TTTGCTTCTTTGGTCAGGGA 57.254 45.000 0.00 0.00 0.00 4.20
101 102 3.493176 CCTTTTTGCTTCTTTGGTCAGGG 60.493 47.826 0.00 0.00 0.00 4.45
102 103 3.721035 CCTTTTTGCTTCTTTGGTCAGG 58.279 45.455 0.00 0.00 0.00 3.86
103 104 3.126073 GCCTTTTTGCTTCTTTGGTCAG 58.874 45.455 0.00 0.00 0.00 3.51
104 105 2.481104 CGCCTTTTTGCTTCTTTGGTCA 60.481 45.455 0.00 0.00 0.00 4.02
105 106 2.127251 CGCCTTTTTGCTTCTTTGGTC 58.873 47.619 0.00 0.00 0.00 4.02
106 107 1.754226 TCGCCTTTTTGCTTCTTTGGT 59.246 42.857 0.00 0.00 0.00 3.67
107 108 2.034558 TCTCGCCTTTTTGCTTCTTTGG 59.965 45.455 0.00 0.00 0.00 3.28
108 109 3.354089 TCTCGCCTTTTTGCTTCTTTG 57.646 42.857 0.00 0.00 0.00 2.77
109 110 3.305608 CCATCTCGCCTTTTTGCTTCTTT 60.306 43.478 0.00 0.00 0.00 2.52
110 111 2.229784 CCATCTCGCCTTTTTGCTTCTT 59.770 45.455 0.00 0.00 0.00 2.52
111 112 1.815003 CCATCTCGCCTTTTTGCTTCT 59.185 47.619 0.00 0.00 0.00 2.85
112 113 1.135286 CCCATCTCGCCTTTTTGCTTC 60.135 52.381 0.00 0.00 0.00 3.86
113 114 0.890683 CCCATCTCGCCTTTTTGCTT 59.109 50.000 0.00 0.00 0.00 3.91
114 115 0.967380 CCCCATCTCGCCTTTTTGCT 60.967 55.000 0.00 0.00 0.00 3.91
115 116 1.512694 CCCCATCTCGCCTTTTTGC 59.487 57.895 0.00 0.00 0.00 3.68
116 117 2.192605 CCCCCATCTCGCCTTTTTG 58.807 57.895 0.00 0.00 0.00 2.44
117 118 4.764143 CCCCCATCTCGCCTTTTT 57.236 55.556 0.00 0.00 0.00 1.94
131 132 2.965831 ACTTTCTTTGCTTTTCTCCCCC 59.034 45.455 0.00 0.00 0.00 5.40
132 133 4.672587 AACTTTCTTTGCTTTTCTCCCC 57.327 40.909 0.00 0.00 0.00 4.81
133 134 5.692204 GCTTAACTTTCTTTGCTTTTCTCCC 59.308 40.000 0.00 0.00 0.00 4.30
134 135 6.273071 TGCTTAACTTTCTTTGCTTTTCTCC 58.727 36.000 0.00 0.00 0.00 3.71
135 136 7.568315 GCATGCTTAACTTTCTTTGCTTTTCTC 60.568 37.037 11.37 0.00 0.00 2.87
136 137 6.201615 GCATGCTTAACTTTCTTTGCTTTTCT 59.798 34.615 11.37 0.00 0.00 2.52
137 138 6.018832 TGCATGCTTAACTTTCTTTGCTTTTC 60.019 34.615 20.33 0.00 0.00 2.29
138 139 5.816777 TGCATGCTTAACTTTCTTTGCTTTT 59.183 32.000 20.33 0.00 0.00 2.27
139 140 5.234972 GTGCATGCTTAACTTTCTTTGCTTT 59.765 36.000 20.33 0.00 0.00 3.51
140 141 4.746611 GTGCATGCTTAACTTTCTTTGCTT 59.253 37.500 20.33 0.00 0.00 3.91
141 142 4.038402 AGTGCATGCTTAACTTTCTTTGCT 59.962 37.500 20.33 0.00 0.00 3.91
142 143 4.149396 CAGTGCATGCTTAACTTTCTTTGC 59.851 41.667 20.33 0.00 0.00 3.68
143 144 4.682860 CCAGTGCATGCTTAACTTTCTTTG 59.317 41.667 20.33 2.18 0.00 2.77
144 145 4.342092 ACCAGTGCATGCTTAACTTTCTTT 59.658 37.500 20.33 0.00 0.00 2.52
145 146 3.891366 ACCAGTGCATGCTTAACTTTCTT 59.109 39.130 20.33 0.00 0.00 2.52
146 147 3.490348 ACCAGTGCATGCTTAACTTTCT 58.510 40.909 20.33 1.90 0.00 2.52
147 148 3.923017 ACCAGTGCATGCTTAACTTTC 57.077 42.857 20.33 0.00 0.00 2.62
148 149 4.158394 CCATACCAGTGCATGCTTAACTTT 59.842 41.667 20.33 6.07 0.00 2.66
149 150 3.696051 CCATACCAGTGCATGCTTAACTT 59.304 43.478 20.33 2.83 0.00 2.66
150 151 3.054434 TCCATACCAGTGCATGCTTAACT 60.054 43.478 20.33 11.41 0.00 2.24
151 152 3.065371 GTCCATACCAGTGCATGCTTAAC 59.935 47.826 20.33 9.00 0.00 2.01
152 153 3.054434 AGTCCATACCAGTGCATGCTTAA 60.054 43.478 20.33 0.00 0.00 1.85
153 154 2.505407 AGTCCATACCAGTGCATGCTTA 59.495 45.455 20.33 0.00 0.00 3.09
154 155 1.283029 AGTCCATACCAGTGCATGCTT 59.717 47.619 20.33 4.18 0.00 3.91
155 156 0.914644 AGTCCATACCAGTGCATGCT 59.085 50.000 20.33 0.00 0.00 3.79
156 157 2.487934 CTAGTCCATACCAGTGCATGC 58.512 52.381 11.82 11.82 0.00 4.06
157 158 2.808202 GCCTAGTCCATACCAGTGCATG 60.808 54.545 0.00 0.00 0.00 4.06
158 159 1.417890 GCCTAGTCCATACCAGTGCAT 59.582 52.381 0.00 0.00 0.00 3.96
159 160 0.830648 GCCTAGTCCATACCAGTGCA 59.169 55.000 0.00 0.00 0.00 4.57
160 161 0.830648 TGCCTAGTCCATACCAGTGC 59.169 55.000 0.00 0.00 0.00 4.40
161 162 2.808202 GCATGCCTAGTCCATACCAGTG 60.808 54.545 6.36 0.00 0.00 3.66
162 163 1.417890 GCATGCCTAGTCCATACCAGT 59.582 52.381 6.36 0.00 0.00 4.00
163 164 1.696336 AGCATGCCTAGTCCATACCAG 59.304 52.381 15.66 0.00 0.00 4.00
164 165 1.806496 AGCATGCCTAGTCCATACCA 58.194 50.000 15.66 0.00 0.00 3.25
165 166 2.938956 AAGCATGCCTAGTCCATACC 57.061 50.000 15.66 0.00 0.00 2.73
166 167 3.808728 TGAAAGCATGCCTAGTCCATAC 58.191 45.455 15.66 0.00 0.00 2.39
167 168 4.502105 TTGAAAGCATGCCTAGTCCATA 57.498 40.909 15.66 0.00 0.00 2.74
168 169 3.370840 TTGAAAGCATGCCTAGTCCAT 57.629 42.857 15.66 0.00 0.00 3.41
169 170 2.877097 TTGAAAGCATGCCTAGTCCA 57.123 45.000 15.66 1.32 0.00 4.02
170 171 2.620585 GGATTGAAAGCATGCCTAGTCC 59.379 50.000 15.66 11.03 0.00 3.85
171 172 3.282021 TGGATTGAAAGCATGCCTAGTC 58.718 45.455 15.66 7.31 0.00 2.59
172 173 3.370840 TGGATTGAAAGCATGCCTAGT 57.629 42.857 15.66 0.00 0.00 2.57
173 174 3.552273 GCATGGATTGAAAGCATGCCTAG 60.552 47.826 15.66 0.00 41.75 3.02
174 175 2.363038 GCATGGATTGAAAGCATGCCTA 59.637 45.455 15.66 0.00 41.75 3.93
175 176 1.138266 GCATGGATTGAAAGCATGCCT 59.862 47.619 15.66 0.00 41.75 4.75
176 177 1.578583 GCATGGATTGAAAGCATGCC 58.421 50.000 15.66 0.00 41.75 4.40
177 178 1.202325 TCGCATGGATTGAAAGCATGC 60.202 47.619 10.51 10.51 43.47 4.06
178 179 2.855660 TCGCATGGATTGAAAGCATG 57.144 45.000 0.00 0.00 0.00 4.06
179 180 2.953648 TCATCGCATGGATTGAAAGCAT 59.046 40.909 0.00 0.00 31.28 3.79
180 181 2.367486 TCATCGCATGGATTGAAAGCA 58.633 42.857 0.00 0.00 31.28 3.91
181 182 3.425577 TTCATCGCATGGATTGAAAGC 57.574 42.857 0.00 0.00 31.28 3.51
182 183 5.643664 TCTTTTCATCGCATGGATTGAAAG 58.356 37.500 14.73 14.73 36.61 2.62
183 184 5.641783 TCTTTTCATCGCATGGATTGAAA 57.358 34.783 0.00 6.35 33.91 2.69
184 185 5.641783 TTCTTTTCATCGCATGGATTGAA 57.358 34.783 0.00 1.10 31.28 2.69
185 186 5.401550 GTTTCTTTTCATCGCATGGATTGA 58.598 37.500 0.00 0.00 31.28 2.57
186 187 4.263677 CGTTTCTTTTCATCGCATGGATTG 59.736 41.667 0.00 0.00 31.28 2.67
187 188 4.414852 CGTTTCTTTTCATCGCATGGATT 58.585 39.130 0.00 0.00 31.28 3.01
188 189 3.181497 CCGTTTCTTTTCATCGCATGGAT 60.181 43.478 0.00 0.00 35.09 3.41
189 190 2.161410 CCGTTTCTTTTCATCGCATGGA 59.839 45.455 0.00 0.00 0.00 3.41
190 191 2.518949 CCGTTTCTTTTCATCGCATGG 58.481 47.619 0.00 0.00 0.00 3.66
191 192 2.161410 TCCCGTTTCTTTTCATCGCATG 59.839 45.455 0.00 0.00 0.00 4.06
192 193 2.432444 TCCCGTTTCTTTTCATCGCAT 58.568 42.857 0.00 0.00 0.00 4.73
193 194 1.885560 TCCCGTTTCTTTTCATCGCA 58.114 45.000 0.00 0.00 0.00 5.10
194 195 2.482721 TCTTCCCGTTTCTTTTCATCGC 59.517 45.455 0.00 0.00 0.00 4.58
195 196 3.994392 TCTCTTCCCGTTTCTTTTCATCG 59.006 43.478 0.00 0.00 0.00 3.84
196 197 5.238583 TCTCTCTTCCCGTTTCTTTTCATC 58.761 41.667 0.00 0.00 0.00 2.92
197 198 5.012148 TCTCTCTCTTCCCGTTTCTTTTCAT 59.988 40.000 0.00 0.00 0.00 2.57
198 199 4.344102 TCTCTCTCTTCCCGTTTCTTTTCA 59.656 41.667 0.00 0.00 0.00 2.69
199 200 4.884247 TCTCTCTCTTCCCGTTTCTTTTC 58.116 43.478 0.00 0.00 0.00 2.29
200 201 4.957684 TCTCTCTCTTCCCGTTTCTTTT 57.042 40.909 0.00 0.00 0.00 2.27
201 202 4.957684 TTCTCTCTCTTCCCGTTTCTTT 57.042 40.909 0.00 0.00 0.00 2.52
202 203 4.503469 GGTTTCTCTCTCTTCCCGTTTCTT 60.503 45.833 0.00 0.00 0.00 2.52
203 204 3.007074 GGTTTCTCTCTCTTCCCGTTTCT 59.993 47.826 0.00 0.00 0.00 2.52
204 205 3.327626 GGTTTCTCTCTCTTCCCGTTTC 58.672 50.000 0.00 0.00 0.00 2.78
205 206 2.288886 CGGTTTCTCTCTCTTCCCGTTT 60.289 50.000 0.00 0.00 0.00 3.60
206 207 1.272769 CGGTTTCTCTCTCTTCCCGTT 59.727 52.381 0.00 0.00 0.00 4.44
207 208 0.889306 CGGTTTCTCTCTCTTCCCGT 59.111 55.000 0.00 0.00 0.00 5.28
208 209 0.889306 ACGGTTTCTCTCTCTTCCCG 59.111 55.000 0.00 0.00 39.75 5.14
209 210 1.066787 CCACGGTTTCTCTCTCTTCCC 60.067 57.143 0.00 0.00 0.00 3.97
210 211 1.893801 TCCACGGTTTCTCTCTCTTCC 59.106 52.381 0.00 0.00 0.00 3.46
211 212 2.352912 GGTCCACGGTTTCTCTCTCTTC 60.353 54.545 0.00 0.00 0.00 2.87
212 213 1.619332 GGTCCACGGTTTCTCTCTCTT 59.381 52.381 0.00 0.00 0.00 2.85
213 214 1.258676 GGTCCACGGTTTCTCTCTCT 58.741 55.000 0.00 0.00 0.00 3.10
214 215 0.966920 TGGTCCACGGTTTCTCTCTC 59.033 55.000 0.00 0.00 0.00 3.20
215 216 1.645710 ATGGTCCACGGTTTCTCTCT 58.354 50.000 0.00 0.00 0.00 3.10
216 217 2.496470 ACTATGGTCCACGGTTTCTCTC 59.504 50.000 0.00 0.00 0.00 3.20
217 218 2.233922 CACTATGGTCCACGGTTTCTCT 59.766 50.000 0.00 0.00 0.00 3.10
218 219 2.232941 TCACTATGGTCCACGGTTTCTC 59.767 50.000 0.00 0.00 0.00 2.87
219 220 2.233922 CTCACTATGGTCCACGGTTTCT 59.766 50.000 0.00 0.00 0.00 2.52
220 221 2.618053 CTCACTATGGTCCACGGTTTC 58.382 52.381 0.00 0.00 0.00 2.78
221 222 1.278127 CCTCACTATGGTCCACGGTTT 59.722 52.381 0.00 0.00 0.00 3.27
222 223 0.902531 CCTCACTATGGTCCACGGTT 59.097 55.000 0.00 0.00 0.00 4.44
223 224 1.614241 GCCTCACTATGGTCCACGGT 61.614 60.000 0.00 0.00 0.00 4.83
224 225 1.144057 GCCTCACTATGGTCCACGG 59.856 63.158 0.00 0.00 0.00 4.94
225 226 0.179100 CTGCCTCACTATGGTCCACG 60.179 60.000 0.00 0.00 0.00 4.94
226 227 0.462759 GCTGCCTCACTATGGTCCAC 60.463 60.000 0.00 0.00 0.00 4.02
227 228 0.618680 AGCTGCCTCACTATGGTCCA 60.619 55.000 0.00 0.00 0.00 4.02
228 229 1.414158 TAGCTGCCTCACTATGGTCC 58.586 55.000 0.00 0.00 0.00 4.46
229 230 3.397482 CAATAGCTGCCTCACTATGGTC 58.603 50.000 0.00 0.00 0.00 4.02
230 231 2.486191 GCAATAGCTGCCTCACTATGGT 60.486 50.000 0.00 0.00 46.13 3.55
231 232 2.149578 GCAATAGCTGCCTCACTATGG 58.850 52.381 0.00 0.00 46.13 2.74
242 243 3.598019 AAACACCCAATGCAATAGCTG 57.402 42.857 0.00 0.00 42.74 4.24
243 244 5.337491 CCTTAAAACACCCAATGCAATAGCT 60.337 40.000 0.00 0.00 42.74 3.32
244 245 4.869861 CCTTAAAACACCCAATGCAATAGC 59.130 41.667 0.00 0.00 42.57 2.97
245 246 6.036577 ACCTTAAAACACCCAATGCAATAG 57.963 37.500 0.00 0.00 0.00 1.73
246 247 6.722129 AGTACCTTAAAACACCCAATGCAATA 59.278 34.615 0.00 0.00 0.00 1.90
247 248 4.972751 ACCTTAAAACACCCAATGCAAT 57.027 36.364 0.00 0.00 0.00 3.56
248 249 4.896482 AGTACCTTAAAACACCCAATGCAA 59.104 37.500 0.00 0.00 0.00 4.08
249 250 4.475345 AGTACCTTAAAACACCCAATGCA 58.525 39.130 0.00 0.00 0.00 3.96
250 251 5.462530 AAGTACCTTAAAACACCCAATGC 57.537 39.130 0.00 0.00 0.00 3.56
251 252 7.966204 CGATAAAGTACCTTAAAACACCCAATG 59.034 37.037 0.00 0.00 0.00 2.82
252 253 7.666804 ACGATAAAGTACCTTAAAACACCCAAT 59.333 33.333 0.00 0.00 0.00 3.16
253 254 6.997476 ACGATAAAGTACCTTAAAACACCCAA 59.003 34.615 0.00 0.00 0.00 4.12
254 255 6.532826 ACGATAAAGTACCTTAAAACACCCA 58.467 36.000 0.00 0.00 0.00 4.51
255 256 8.546597 TTACGATAAAGTACCTTAAAACACCC 57.453 34.615 0.00 0.00 0.00 4.61
264 265 9.129532 AGCAGTAGTATTACGATAAAGTACCTT 57.870 33.333 0.00 0.00 34.88 3.50
265 266 8.688747 AGCAGTAGTATTACGATAAAGTACCT 57.311 34.615 0.00 0.00 34.88 3.08
266 267 8.562892 TGAGCAGTAGTATTACGATAAAGTACC 58.437 37.037 0.00 0.00 34.88 3.34
267 268 9.941664 TTGAGCAGTAGTATTACGATAAAGTAC 57.058 33.333 0.00 0.00 34.88 2.73
269 270 8.136165 CCTTGAGCAGTAGTATTACGATAAAGT 58.864 37.037 0.00 0.00 34.88 2.66
270 271 8.136165 ACCTTGAGCAGTAGTATTACGATAAAG 58.864 37.037 0.00 0.00 34.88 1.85
271 272 7.919091 CACCTTGAGCAGTAGTATTACGATAAA 59.081 37.037 0.00 0.00 34.88 1.40
272 273 7.423199 CACCTTGAGCAGTAGTATTACGATAA 58.577 38.462 0.00 0.00 34.88 1.75
273 274 6.514541 GCACCTTGAGCAGTAGTATTACGATA 60.515 42.308 0.00 0.00 34.88 2.92
274 275 5.736492 GCACCTTGAGCAGTAGTATTACGAT 60.736 44.000 0.00 0.00 34.88 3.73
275 276 4.439700 GCACCTTGAGCAGTAGTATTACGA 60.440 45.833 0.00 0.00 34.88 3.43
276 277 3.797256 GCACCTTGAGCAGTAGTATTACG 59.203 47.826 0.00 0.00 34.88 3.18
277 278 5.012328 AGCACCTTGAGCAGTAGTATTAC 57.988 43.478 0.00 0.00 0.00 1.89
278 279 5.395324 GGAAGCACCTTGAGCAGTAGTATTA 60.395 44.000 0.00 0.00 35.41 0.98
279 280 4.508662 GAAGCACCTTGAGCAGTAGTATT 58.491 43.478 0.00 0.00 0.00 1.89
280 281 3.118592 GGAAGCACCTTGAGCAGTAGTAT 60.119 47.826 0.00 0.00 35.41 2.12
281 282 2.233922 GGAAGCACCTTGAGCAGTAGTA 59.766 50.000 0.00 0.00 35.41 1.82
282 283 1.002544 GGAAGCACCTTGAGCAGTAGT 59.997 52.381 0.00 0.00 35.41 2.73
283 284 1.002430 TGGAAGCACCTTGAGCAGTAG 59.998 52.381 1.91 0.00 39.86 2.57
284 285 1.055849 TGGAAGCACCTTGAGCAGTA 58.944 50.000 1.91 0.00 39.86 2.74
285 286 0.403271 ATGGAAGCACCTTGAGCAGT 59.597 50.000 1.91 0.00 39.86 4.40
286 287 1.201647 CAATGGAAGCACCTTGAGCAG 59.798 52.381 1.91 0.00 39.86 4.24
287 288 1.250328 CAATGGAAGCACCTTGAGCA 58.750 50.000 1.91 0.00 39.86 4.26
288 289 0.108945 GCAATGGAAGCACCTTGAGC 60.109 55.000 12.41 0.00 39.86 4.26
289 290 1.471684 GAGCAATGGAAGCACCTTGAG 59.528 52.381 12.41 2.52 39.86 3.02
290 291 1.202915 TGAGCAATGGAAGCACCTTGA 60.203 47.619 12.41 0.00 39.86 3.02
291 292 1.250328 TGAGCAATGGAAGCACCTTG 58.750 50.000 1.91 5.17 39.86 3.61
292 293 1.822990 CATGAGCAATGGAAGCACCTT 59.177 47.619 0.00 0.00 39.86 3.50
293 294 1.471119 CATGAGCAATGGAAGCACCT 58.529 50.000 0.00 0.00 39.86 4.00
294 295 0.179119 GCATGAGCAATGGAAGCACC 60.179 55.000 0.00 0.00 41.58 5.01
295 296 0.179119 GGCATGAGCAATGGAAGCAC 60.179 55.000 0.00 0.00 44.61 4.40
296 297 1.324740 GGGCATGAGCAATGGAAGCA 61.325 55.000 0.00 0.00 44.61 3.91
297 298 1.041447 AGGGCATGAGCAATGGAAGC 61.041 55.000 0.00 0.00 44.61 3.86
298 299 1.481871 AAGGGCATGAGCAATGGAAG 58.518 50.000 0.00 0.00 44.61 3.46
299 300 2.025037 ACTAAGGGCATGAGCAATGGAA 60.025 45.455 0.00 0.00 44.61 3.53
300 301 1.565759 ACTAAGGGCATGAGCAATGGA 59.434 47.619 0.00 0.00 44.61 3.41
301 302 1.952296 GACTAAGGGCATGAGCAATGG 59.048 52.381 0.00 0.00 44.61 3.16
302 303 1.952296 GGACTAAGGGCATGAGCAATG 59.048 52.381 0.00 0.00 44.61 2.82
303 304 1.565759 TGGACTAAGGGCATGAGCAAT 59.434 47.619 0.00 0.00 44.61 3.56
304 305 0.991146 TGGACTAAGGGCATGAGCAA 59.009 50.000 0.00 0.00 44.61 3.91
305 306 0.253044 GTGGACTAAGGGCATGAGCA 59.747 55.000 0.00 0.00 44.61 4.26
306 307 0.464554 GGTGGACTAAGGGCATGAGC 60.465 60.000 0.00 0.00 41.10 4.26
307 308 0.181350 GGGTGGACTAAGGGCATGAG 59.819 60.000 0.00 0.00 0.00 2.90
308 309 0.253160 AGGGTGGACTAAGGGCATGA 60.253 55.000 0.00 0.00 0.00 3.07
309 310 1.141053 GTAGGGTGGACTAAGGGCATG 59.859 57.143 0.00 0.00 0.00 4.06
310 311 1.274184 TGTAGGGTGGACTAAGGGCAT 60.274 52.381 0.00 0.00 0.00 4.40
311 312 0.117541 TGTAGGGTGGACTAAGGGCA 59.882 55.000 0.00 0.00 0.00 5.36
312 313 1.065636 GTTGTAGGGTGGACTAAGGGC 60.066 57.143 0.00 0.00 0.00 5.19
313 314 2.547990 AGTTGTAGGGTGGACTAAGGG 58.452 52.381 0.00 0.00 0.00 3.95
314 315 4.324267 CAAAGTTGTAGGGTGGACTAAGG 58.676 47.826 0.00 0.00 0.00 2.69
324 325 6.072119 GGAAGATAAACACCAAAGTTGTAGGG 60.072 42.308 0.00 0.00 0.00 3.53
331 332 5.061721 ACAGGGAAGATAAACACCAAAGT 57.938 39.130 0.00 0.00 0.00 2.66
366 367 1.079503 GAAAGAGCTTGCCTACGTGG 58.920 55.000 0.00 0.00 39.35 4.94
431 1336 3.376078 GGAGGACACGCGGTGGTA 61.376 66.667 12.47 0.00 37.94 3.25
466 1371 5.854010 AAGGACGAAATACATCTGAGCTA 57.146 39.130 0.00 0.00 0.00 3.32
486 1391 4.434857 CGAGCGCTAGAAAAGAAAGGAAAG 60.435 45.833 11.50 0.00 0.00 2.62
533 1438 1.344953 TTATCTGGGCGGGTGATGCT 61.345 55.000 0.00 0.00 0.00 3.79
569 1493 1.227823 CGGGGTGTTTCTGCTCACA 60.228 57.895 0.00 0.00 36.43 3.58
571 1495 1.070786 GACGGGGTGTTTCTGCTCA 59.929 57.895 0.00 0.00 0.00 4.26
585 1509 2.046285 GTGGCAAATGGAGGGACGG 61.046 63.158 0.00 0.00 0.00 4.79
1162 2234 0.249322 GCCTTTGCGCGTAGAGGATA 60.249 55.000 32.82 0.00 0.00 2.59
1348 2420 0.794981 GCACGCACACAACGAAACAA 60.795 50.000 0.00 0.00 0.00 2.83
1349 2421 1.226156 GCACGCACACAACGAAACA 60.226 52.632 0.00 0.00 0.00 2.83
1350 2422 2.276123 CGCACGCACACAACGAAAC 61.276 57.895 0.00 0.00 0.00 2.78
1352 2424 4.583254 GCGCACGCACACAACGAA 62.583 61.111 10.65 0.00 41.49 3.85
1413 2508 0.905357 GCTTAAGACCTCCCAGCTCA 59.095 55.000 6.67 0.00 0.00 4.26
1429 2524 6.211584 TCTTCTTACAGATACTGAAGGTGCTT 59.788 38.462 5.76 0.00 35.98 3.91
1434 2529 6.533367 GCAGTTCTTCTTACAGATACTGAAGG 59.467 42.308 5.76 0.00 35.79 3.46
1494 2589 2.892215 TCAATCCGTGGTGTAGTGTACA 59.108 45.455 0.00 0.00 36.08 2.90
1508 2603 0.818296 AAGACGAGGAGGTCAATCCG 59.182 55.000 0.00 0.00 44.65 4.18
1743 2838 6.035843 GGTGGTTTAACATACAATGATGCAG 58.964 40.000 0.00 0.00 0.00 4.41
1781 2883 9.066892 TGTCATTTTTGTACTTAGAAGATTGCT 57.933 29.630 0.00 0.00 0.00 3.91
1798 2900 8.846943 AGGAAGAAACAAAACTTGTCATTTTT 57.153 26.923 0.00 0.00 44.59 1.94
1920 3022 3.535280 TGTGGTATGCGAAATGAGCTA 57.465 42.857 0.00 0.00 35.28 3.32
1971 3194 8.976986 AAGACAATGAATAAGAAAGATGTTGC 57.023 30.769 0.00 0.00 0.00 4.17
2113 3341 1.661341 GAGGTAGCATCAGCCTTGTG 58.339 55.000 0.00 0.00 43.56 3.33
2287 3517 2.307686 AGTTTATCCTTCTTTGGCGGGA 59.692 45.455 0.00 0.00 0.00 5.14
2309 3539 7.147514 TGGGTGTACCACTAATATTTACGGAAT 60.148 37.037 3.11 0.00 46.80 3.01
2358 3588 9.979578 ACACATTCATAGTATGAGAAGATCTTC 57.020 33.333 25.20 25.20 40.94 2.87
2401 3638 9.631257 TCATATGCCATCTAAGAAAATTTCAGA 57.369 29.630 8.55 3.56 0.00 3.27
2449 3686 7.041721 CACACAAGAGCACTACCAAATCTATA 58.958 38.462 0.00 0.00 0.00 1.31
2510 3759 6.098266 GGAATAACCACATGGAAAGCCTAAAT 59.902 38.462 4.53 0.00 38.94 1.40
2557 3806 1.159713 TGCCAAGCTGAGTGAACACG 61.160 55.000 0.00 0.00 36.20 4.49
2793 4053 9.825972 CATAAACAAAGTTGTACTGGTTCATAG 57.174 33.333 0.00 0.00 41.31 2.23
2864 4124 7.483691 CACATTTCATATGTTCACATGTCACTG 59.516 37.037 1.90 0.00 37.15 3.66
2893 4153 9.558396 TGCTCATTTCATATGTTCATATGTACA 57.442 29.630 23.42 16.31 36.26 2.90
2953 4213 1.759445 AGGTGAGAGGATTGACCGATG 59.241 52.381 0.00 0.00 44.74 3.84
2954 4214 2.166907 AGGTGAGAGGATTGACCGAT 57.833 50.000 0.00 0.00 44.74 4.18
3010 4271 6.175471 GCATCTTCCCCAAAATTTCAGAATT 58.825 36.000 0.00 0.00 37.06 2.17
3013 4274 4.158786 TGCATCTTCCCCAAAATTTCAGA 58.841 39.130 0.00 0.00 0.00 3.27
3014 4275 4.540359 TGCATCTTCCCCAAAATTTCAG 57.460 40.909 0.00 0.00 0.00 3.02
3091 4369 5.277601 ACGAAACACGAATGAACCTATTG 57.722 39.130 0.00 0.00 45.77 1.90
3203 4481 7.636150 ATGTGGGTCTTCATAATTCTTTCAG 57.364 36.000 0.00 0.00 0.00 3.02
3238 4516 9.042008 GTATTCTAGTTTGCTCGATTTTCCATA 57.958 33.333 0.00 0.00 0.00 2.74
3341 4619 6.040616 ACATAGGTCTTCCTCGTCGATTATTT 59.959 38.462 0.00 0.00 43.94 1.40
3436 4714 0.828762 ACTTGCCATGAAGCTGCCAA 60.829 50.000 0.00 0.00 0.00 4.52
3446 4724 1.153168 CGGACCCCTACTTGCCATG 60.153 63.158 0.00 0.00 0.00 3.66
3448 4726 3.712907 GCGGACCCCTACTTGCCA 61.713 66.667 0.00 0.00 0.00 4.92
3482 4760 3.050089 TCCTTAAACCCACTGTTCTCCA 58.950 45.455 0.00 0.00 35.67 3.86
3511 4789 3.182263 CCCTGGACCAACCCCACA 61.182 66.667 0.00 0.00 38.00 4.17
3556 4841 1.187087 GTGACTCCCAACCTCTCGAT 58.813 55.000 0.00 0.00 0.00 3.59
3597 4882 1.381872 CCTCCTCTGTCCCACCGAT 60.382 63.158 0.00 0.00 0.00 4.18
3607 4892 1.521616 GCAGCTCCTTCCTCCTCTG 59.478 63.158 0.00 0.00 0.00 3.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.