Multiple sequence alignment - TraesCS2B01G011100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G011100 chr2B 100.000 6533 0 0 1 6533 5992745 5999277 0.000000e+00 12065.0
1 TraesCS2B01G011100 chr2B 99.811 1591 3 0 198 1788 5819550 5817960 0.000000e+00 2922.0
2 TraesCS2B01G011100 chr2B 81.919 1355 196 28 4404 5740 6111705 6113028 0.000000e+00 1099.0
3 TraesCS2B01G011100 chr2B 88.394 853 92 5 5028 5877 6029729 6030577 0.000000e+00 1020.0
4 TraesCS2B01G011100 chr2B 82.049 1220 157 32 4364 5557 6132033 6133216 0.000000e+00 983.0
5 TraesCS2B01G011100 chr2B 95.431 569 23 2 3213 3781 5812203 5811638 0.000000e+00 904.0
6 TraesCS2B01G011100 chr2B 82.778 720 71 22 291 971 38274050 38273345 1.570000e-165 593.0
7 TraesCS2B01G011100 chr2B 88.889 450 43 4 6091 6533 5964634 5965083 1.240000e-151 547.0
8 TraesCS2B01G011100 chr2B 80.241 415 53 18 537 934 188809071 188809473 1.070000e-72 285.0
9 TraesCS2B01G011100 chr2B 92.271 207 5 3 1 207 3022730 3022535 3.860000e-72 283.0
10 TraesCS2B01G011100 chr2B 92.233 206 5 3 1 205 32749772 32749577 1.390000e-71 281.0
11 TraesCS2B01G011100 chr2B 79.462 409 57 21 2021 2419 682165051 682165442 1.400000e-66 265.0
12 TraesCS2B01G011100 chr2B 77.458 417 76 13 2019 2426 256387685 256388092 3.940000e-57 233.0
13 TraesCS2B01G011100 chr2B 89.571 163 12 5 1 163 102743834 102743677 1.110000e-47 202.0
14 TraesCS2B01G011100 chr2B 80.383 209 36 5 6320 6524 655517949 655518156 3.150000e-33 154.0
15 TraesCS2B01G011100 chr2B 93.976 83 5 0 1017 1099 485456008 485455926 6.880000e-25 126.0
16 TraesCS2B01G011100 chr2B 87.654 81 9 1 1017 1097 6063192 6063113 6.970000e-15 93.5
17 TraesCS2B01G011100 chr2B 89.189 74 8 0 198 271 164077484 164077411 6.970000e-15 93.5
18 TraesCS2B01G011100 chr2B 100.000 40 0 0 1113 1152 5819965 5819926 2.530000e-09 75.0
19 TraesCS2B01G011100 chr2D 93.500 1523 77 6 3489 5010 5472262 5473763 0.000000e+00 2244.0
20 TraesCS2B01G011100 chr2D 94.274 978 45 5 2525 3496 5469949 5470921 0.000000e+00 1485.0
21 TraesCS2B01G011100 chr2D 91.984 973 55 15 5551 6511 5445161 5444200 0.000000e+00 1343.0
22 TraesCS2B01G011100 chr2D 90.966 952 58 7 4627 5553 5480908 5481856 0.000000e+00 1256.0
23 TraesCS2B01G011100 chr2D 88.425 527 47 7 1666 2187 5468490 5469007 2.000000e-174 623.0
24 TraesCS2B01G011100 chr2D 90.995 422 27 4 523 934 378196957 378196537 5.720000e-155 558.0
25 TraesCS2B01G011100 chr2D 83.368 475 51 15 480 934 96543444 96543910 1.310000e-111 414.0
26 TraesCS2B01G011100 chr2D 84.305 446 39 9 2091 2530 5468995 5469415 2.190000e-109 407.0
27 TraesCS2B01G011100 chr2D 92.414 145 11 0 1416 1560 5468345 5468489 2.390000e-49 207.0
28 TraesCS2B01G011100 chr2D 85.106 188 22 5 6318 6502 141189192 141189376 3.110000e-43 187.0
29 TraesCS2B01G011100 chr2D 83.246 191 27 5 6313 6500 597963548 597963736 3.130000e-38 171.0
30 TraesCS2B01G011100 chr2D 81.579 190 31 3 6313 6500 641975793 641975980 3.150000e-33 154.0
31 TraesCS2B01G011100 chr2D 83.594 128 18 3 6405 6529 490678723 490678596 4.140000e-22 117.0
32 TraesCS2B01G011100 chr2D 76.256 219 40 9 6301 6513 508079465 508079253 8.960000e-19 106.0
33 TraesCS2B01G011100 chr2D 84.337 83 8 5 4957 5038 568236059 568235981 7.020000e-10 76.8
34 TraesCS2B01G011100 chr2D 97.674 43 1 0 1017 1059 76876234 76876192 2.530000e-09 75.0
35 TraesCS2B01G011100 chr2A 92.063 1008 64 8 3612 4610 4111254 4110254 0.000000e+00 1404.0
36 TraesCS2B01G011100 chr2A 91.006 1034 88 4 4682 5713 4110233 4109203 0.000000e+00 1389.0
37 TraesCS2B01G011100 chr2A 86.821 736 69 12 1805 2530 4113583 4112866 0.000000e+00 797.0
38 TraesCS2B01G011100 chr2A 87.198 414 33 10 5750 6155 4109203 4108802 2.780000e-123 453.0
39 TraesCS2B01G011100 chr2A 98.684 76 1 0 1017 1092 24008556 24008631 1.140000e-27 135.0
40 TraesCS2B01G011100 chr2A 84.746 118 12 6 81 197 28040709 28040821 5.350000e-21 113.0
41 TraesCS2B01G011100 chr7D 86.558 677 53 12 291 934 41063195 41062524 0.000000e+00 712.0
42 TraesCS2B01G011100 chr7D 86.324 680 48 14 291 934 160491900 160491230 0.000000e+00 699.0
43 TraesCS2B01G011100 chr7D 85.037 675 58 15 296 934 90807601 90808268 0.000000e+00 647.0
44 TraesCS2B01G011100 chr7D 85.737 638 54 16 291 896 159088427 159087795 1.990000e-179 640.0
45 TraesCS2B01G011100 chr7D 88.000 175 17 4 291 465 127672388 127672218 3.090000e-48 204.0
46 TraesCS2B01G011100 chr7D 84.444 135 15 5 6372 6502 599188783 599188651 1.910000e-25 128.0
47 TraesCS2B01G011100 chr7D 93.506 77 5 0 1017 1093 17368767 17368691 1.490000e-21 115.0
48 TraesCS2B01G011100 chr4A 86.677 668 58 9 291 934 616011995 616012655 0.000000e+00 712.0
49 TraesCS2B01G011100 chr4A 93.627 204 3 2 1 203 525981576 525981770 4.950000e-76 296.0
50 TraesCS2B01G011100 chr4A 94.416 197 2 1 1 197 623774775 623774962 1.780000e-75 294.0
51 TraesCS2B01G011100 chr4A 96.053 76 3 0 1017 1092 616012820 616012895 2.470000e-24 124.0
52 TraesCS2B01G011100 chr4A 97.059 34 1 0 4958 4991 659223606 659223639 2.540000e-04 58.4
53 TraesCS2B01G011100 chr4A 96.970 33 1 0 4959 4991 659827076 659827108 1.000000e-03 56.5
54 TraesCS2B01G011100 chr3D 86.471 680 52 15 291 935 602225048 602225722 0.000000e+00 710.0
55 TraesCS2B01G011100 chr3D 86.050 681 53 17 291 934 93602769 93603444 0.000000e+00 693.0
56 TraesCS2B01G011100 chr3D 78.147 421 65 21 2019 2428 412820819 412820415 6.540000e-60 243.0
57 TraesCS2B01G011100 chr3D 75.909 220 39 13 6321 6533 437473444 437473232 4.170000e-17 100.0
58 TraesCS2B01G011100 chr3B 85.125 679 60 12 291 934 501969346 501970018 0.000000e+00 656.0
59 TraesCS2B01G011100 chr3B 84.934 531 47 9 291 792 828251313 828251839 2.100000e-139 507.0
60 TraesCS2B01G011100 chr3B 90.909 77 7 0 1017 1093 74761380 74761456 3.220000e-18 104.0
61 TraesCS2B01G011100 chr5D 85.460 619 69 16 291 896 218579212 218579822 5.560000e-175 625.0
62 TraesCS2B01G011100 chr5D 83.673 147 19 4 6357 6499 445802755 445802900 4.110000e-27 134.0
63 TraesCS2B01G011100 chr1B 82.464 633 60 23 291 896 468148 467540 2.100000e-139 507.0
64 TraesCS2B01G011100 chr1B 93.689 206 3 2 1 205 582803656 582803460 3.830000e-77 300.0
65 TraesCS2B01G011100 chr1B 91.748 206 3 4 1 206 545816875 545816684 2.320000e-69 274.0
66 TraesCS2B01G011100 chr1B 79.100 311 51 11 634 931 46374102 46373793 1.110000e-47 202.0
67 TraesCS2B01G011100 chr1B 90.541 74 7 0 198 271 188935357 188935284 1.500000e-16 99.0
68 TraesCS2B01G011100 chr1B 89.041 73 8 0 1017 1089 11916371 11916443 2.510000e-14 91.6
69 TraesCS2B01G011100 chr5B 80.204 687 77 37 291 930 686219883 686220557 1.660000e-125 460.0
70 TraesCS2B01G011100 chr5B 92.611 203 5 2 1 203 333148804 333148996 3.860000e-72 283.0
71 TraesCS2B01G011100 chr5B 90.857 175 16 0 291 465 702877471 702877297 1.100000e-57 235.0
72 TraesCS2B01G011100 chr5B 80.663 181 28 7 6319 6494 123764823 123765001 4.110000e-27 134.0
73 TraesCS2B01G011100 chr7A 81.895 475 56 22 480 934 408561840 408561376 2.220000e-99 374.0
74 TraesCS2B01G011100 chr7A 93.103 203 5 1 1 203 570732971 570733164 8.290000e-74 289.0
75 TraesCS2B01G011100 chr7A 92.893 197 4 2 1 197 636185423 636185609 1.790000e-70 278.0
76 TraesCS2B01G011100 chr7A 80.682 176 27 6 6331 6502 691441962 691441790 5.320000e-26 130.0
77 TraesCS2B01G011100 chr7A 80.714 140 17 6 4823 4953 344677308 344677446 4.170000e-17 100.0
78 TraesCS2B01G011100 chr7A 77.528 178 28 8 4823 4992 80142171 80141998 5.390000e-16 97.1
79 TraesCS2B01G011100 chr7B 80.873 481 59 21 480 934 582639332 582638859 1.350000e-91 348.0
80 TraesCS2B01G011100 chr7B 87.500 288 25 2 657 934 499369040 499368754 8.170000e-84 322.0
81 TraesCS2B01G011100 chr7B 93.204 206 4 2 1 205 747860836 747860640 1.780000e-75 294.0
82 TraesCS2B01G011100 chr7B 93.909 197 3 1 1 197 328431524 328431337 8.290000e-74 289.0
83 TraesCS2B01G011100 chr7B 89.447 199 19 2 1 197 730288925 730289123 3.910000e-62 250.0
84 TraesCS2B01G011100 chr7B 82.911 158 23 3 6357 6511 678641393 678641237 8.830000e-29 139.0
85 TraesCS2B01G011100 chr7B 80.420 143 18 6 4822 4956 22462001 22461861 4.170000e-17 100.0
86 TraesCS2B01G011100 chr6B 92.754 207 6 1 1 207 109733889 109733692 2.300000e-74 291.0
87 TraesCS2B01G011100 chr6B 90.769 195 15 3 5 197 717281767 717281960 2.340000e-64 257.0
88 TraesCS2B01G011100 chr6B 85.593 118 10 7 81 197 73932009 73932120 4.140000e-22 117.0
89 TraesCS2B01G011100 chr6A 93.939 198 3 1 1 198 9966661 9966849 2.300000e-74 291.0
90 TraesCS2B01G011100 chr6A 91.388 209 6 3 1 209 262600126 262600322 6.450000e-70 276.0
91 TraesCS2B01G011100 chr4D 79.793 386 58 14 2047 2425 298116127 298116499 5.020000e-66 263.0
92 TraesCS2B01G011100 chr4D 93.421 76 5 0 1017 1092 69009822 69009897 5.350000e-21 113.0
93 TraesCS2B01G011100 chr1D 77.562 361 65 13 2002 2358 424909326 424908978 3.090000e-48 204.0
94 TraesCS2B01G011100 chr1D 79.832 119 20 4 6385 6500 329024943 329024826 4.200000e-12 84.2
95 TraesCS2B01G011100 chr1D 81.000 100 15 4 6417 6513 393731566 393731468 7.020000e-10 76.8
96 TraesCS2B01G011100 chrUn 76.585 410 70 19 2026 2425 61035758 61035365 1.110000e-47 202.0
97 TraesCS2B01G011100 chrUn 76.694 369 65 13 2026 2385 35058745 35058389 1.120000e-42 185.0
98 TraesCS2B01G011100 chr5A 79.621 211 35 7 6329 6533 1835401 1835193 1.900000e-30 145.0
99 TraesCS2B01G011100 chr4B 94.737 76 4 0 1017 1092 366461939 366462014 1.150000e-22 119.0
100 TraesCS2B01G011100 chr4B 83.898 118 13 6 81 197 73595183 73595071 2.490000e-19 108.0
101 TraesCS2B01G011100 chr4B 84.000 100 12 4 6405 6501 661169970 661169872 6.970000e-15 93.5
102 TraesCS2B01G011100 chr6D 77.368 190 37 5 6319 6503 73407650 73407838 2.490000e-19 108.0
103 TraesCS2B01G011100 chr6D 82.222 90 11 5 4957 5043 428990490 428990577 9.090000e-09 73.1
104 TraesCS2B01G011100 chr6D 93.023 43 3 0 4845 4887 437919591 437919549 5.470000e-06 63.9
105 TraesCS2B01G011100 chr6D 94.595 37 2 0 897 933 450017178 450017214 2.540000e-04 58.4
106 TraesCS2B01G011100 chr3A 92.105 76 6 0 1017 1092 507755520 507755595 2.490000e-19 108.0
107 TraesCS2B01G011100 chr3A 81.746 126 13 8 4911 5033 478700738 478700856 5.390000e-16 97.1
108 TraesCS2B01G011100 chr1A 83.465 127 10 9 76 198 129696769 129696650 2.490000e-19 108.0
109 TraesCS2B01G011100 chr1A 81.148 122 19 4 6384 6502 385663291 385663411 1.940000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G011100 chr2B 5992745 5999277 6532 False 12065.00 12065 100.0000 1 6533 1 chr2B.!!$F2 6532
1 TraesCS2B01G011100 chr2B 5817960 5819965 2005 True 1498.50 2922 99.9055 198 1788 2 chr2B.!!$R9 1590
2 TraesCS2B01G011100 chr2B 6111705 6113028 1323 False 1099.00 1099 81.9190 4404 5740 1 chr2B.!!$F4 1336
3 TraesCS2B01G011100 chr2B 6029729 6030577 848 False 1020.00 1020 88.3940 5028 5877 1 chr2B.!!$F3 849
4 TraesCS2B01G011100 chr2B 6132033 6133216 1183 False 983.00 983 82.0490 4364 5557 1 chr2B.!!$F5 1193
5 TraesCS2B01G011100 chr2B 5811638 5812203 565 True 904.00 904 95.4310 3213 3781 1 chr2B.!!$R2 568
6 TraesCS2B01G011100 chr2B 38273345 38274050 705 True 593.00 593 82.7780 291 971 1 chr2B.!!$R5 680
7 TraesCS2B01G011100 chr2D 5444200 5445161 961 True 1343.00 1343 91.9840 5551 6511 1 chr2D.!!$R1 960
8 TraesCS2B01G011100 chr2D 5480908 5481856 948 False 1256.00 1256 90.9660 4627 5553 1 chr2D.!!$F1 926
9 TraesCS2B01G011100 chr2D 5468345 5473763 5418 False 993.20 2244 90.5836 1416 5010 5 chr2D.!!$F6 3594
10 TraesCS2B01G011100 chr2A 4108802 4113583 4781 True 1010.75 1404 89.2720 1805 6155 4 chr2A.!!$R1 4350
11 TraesCS2B01G011100 chr7D 41062524 41063195 671 True 712.00 712 86.5580 291 934 1 chr7D.!!$R2 643
12 TraesCS2B01G011100 chr7D 160491230 160491900 670 True 699.00 699 86.3240 291 934 1 chr7D.!!$R5 643
13 TraesCS2B01G011100 chr7D 90807601 90808268 667 False 647.00 647 85.0370 296 934 1 chr7D.!!$F1 638
14 TraesCS2B01G011100 chr7D 159087795 159088427 632 True 640.00 640 85.7370 291 896 1 chr7D.!!$R4 605
15 TraesCS2B01G011100 chr4A 616011995 616012895 900 False 418.00 712 91.3650 291 1092 2 chr4A.!!$F5 801
16 TraesCS2B01G011100 chr3D 602225048 602225722 674 False 710.00 710 86.4710 291 935 1 chr3D.!!$F2 644
17 TraesCS2B01G011100 chr3D 93602769 93603444 675 False 693.00 693 86.0500 291 934 1 chr3D.!!$F1 643
18 TraesCS2B01G011100 chr3B 501969346 501970018 672 False 656.00 656 85.1250 291 934 1 chr3B.!!$F2 643
19 TraesCS2B01G011100 chr3B 828251313 828251839 526 False 507.00 507 84.9340 291 792 1 chr3B.!!$F3 501
20 TraesCS2B01G011100 chr5D 218579212 218579822 610 False 625.00 625 85.4600 291 896 1 chr5D.!!$F1 605
21 TraesCS2B01G011100 chr1B 467540 468148 608 True 507.00 507 82.4640 291 896 1 chr1B.!!$R1 605
22 TraesCS2B01G011100 chr5B 686219883 686220557 674 False 460.00 460 80.2040 291 930 1 chr5B.!!$F3 639

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
164 165 0.036164 TTCTGGTGCGCCATTAGTGT 59.964 50.000 21.54 0.0 45.05 3.55 F
167 168 0.250510 TGGTGCGCCATTAGTGTCAA 60.251 50.000 16.89 0.0 40.46 3.18 F
168 169 1.094785 GGTGCGCCATTAGTGTCAAT 58.905 50.000 12.58 0.0 34.09 2.57 F
2104 2499 1.004320 ACCCAAACAGACGCGCATA 60.004 52.632 5.73 0.0 0.00 3.14 F
2495 2980 0.321653 GAGGAGCTCTCGCCCAAAAA 60.322 55.000 14.64 0.0 36.60 1.94 F
3508 7098 0.331278 ACGAGCCATGGGAAAATCCA 59.669 50.000 15.13 0.0 38.64 3.41 F
5138 8792 0.106868 TCTTGAGCTGCATCCATGGG 60.107 55.000 13.02 0.0 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2031 2423 0.030101 CCAAACAAACACGCGTGGAT 59.970 50.000 39.21 26.40 34.19 3.41 R
2044 2436 0.107800 TGTCCGTTTCGACCCAAACA 60.108 50.000 0.00 0.00 36.23 2.83 R
2148 2543 0.534203 AACGCCGACACAAATGAGGT 60.534 50.000 0.00 0.00 32.32 3.85 R
3200 5442 0.312416 TGGAATTCCCAAAACACGCG 59.688 50.000 21.90 3.53 43.29 6.01 R
4050 7647 0.610232 GGCTGGGCAGTGTTGAGAAT 60.610 55.000 0.00 0.00 0.00 2.40 R
5212 8866 2.135933 GTGCATACCTATCTTCGGTGC 58.864 52.381 0.00 0.00 35.98 5.01 R
6338 10003 0.325671 TCGGGGAGGAAATGCTCTCT 60.326 55.000 1.70 0.00 0.00 3.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.325028 TTGGACAGACGCACTAGTTAAA 57.675 40.909 0.00 0.00 0.00 1.52
22 23 4.325028 TGGACAGACGCACTAGTTAAAA 57.675 40.909 0.00 0.00 0.00 1.52
23 24 4.695396 TGGACAGACGCACTAGTTAAAAA 58.305 39.130 0.00 0.00 0.00 1.94
46 47 6.885735 AAAAATTTGATACTAATGGCGCAC 57.114 33.333 10.83 0.00 0.00 5.34
48 49 1.961793 TTGATACTAATGGCGCACCC 58.038 50.000 10.83 0.00 33.59 4.61
49 50 0.249699 TGATACTAATGGCGCACCCG 60.250 55.000 10.83 0.00 35.87 5.28
50 51 0.249741 GATACTAATGGCGCACCCGT 60.250 55.000 10.83 1.45 35.87 5.28
51 52 1.000060 GATACTAATGGCGCACCCGTA 60.000 52.381 10.83 3.94 35.87 4.02
54 55 2.916502 CTAATGGCGCACCCGTAGCA 62.917 60.000 10.83 0.00 35.87 3.49
74 75 2.483014 TGGTGCGCCATTAGTAGTTT 57.517 45.000 16.89 0.00 40.46 2.66
76 77 3.940319 TGGTGCGCCATTAGTAGTTTAA 58.060 40.909 16.89 0.00 40.46 1.52
77 78 4.325119 TGGTGCGCCATTAGTAGTTTAAA 58.675 39.130 16.89 0.00 40.46 1.52
78 79 4.154556 TGGTGCGCCATTAGTAGTTTAAAC 59.845 41.667 16.89 10.47 40.46 2.01
79 80 4.393990 GGTGCGCCATTAGTAGTTTAAACT 59.606 41.667 23.58 23.58 37.61 2.66
80 81 5.446875 GGTGCGCCATTAGTAGTTTAAACTC 60.447 44.000 23.76 15.03 36.21 3.01
81 82 5.350640 GTGCGCCATTAGTAGTTTAAACTCT 59.649 40.000 23.76 20.33 40.37 3.24
82 83 6.532657 GTGCGCCATTAGTAGTTTAAACTCTA 59.467 38.462 23.76 19.46 40.37 2.43
83 84 7.063780 GTGCGCCATTAGTAGTTTAAACTCTAA 59.936 37.037 23.76 24.91 40.37 2.10
84 85 7.767198 TGCGCCATTAGTAGTTTAAACTCTAAT 59.233 33.333 26.69 26.69 40.37 1.73
89 90 7.529880 TTAGTAGTTTAAACTCTAATGGCGC 57.470 36.000 23.76 0.00 40.37 6.53
90 91 5.484715 AGTAGTTTAAACTCTAATGGCGCA 58.515 37.500 23.76 0.10 40.37 6.09
91 92 6.113411 AGTAGTTTAAACTCTAATGGCGCAT 58.887 36.000 23.76 0.00 40.37 4.73
92 93 5.485662 AGTTTAAACTCTAATGGCGCATC 57.514 39.130 15.22 0.00 32.86 3.91
94 95 5.065218 AGTTTAAACTCTAATGGCGCATCAG 59.935 40.000 15.22 0.00 32.86 2.90
95 96 2.988010 AACTCTAATGGCGCATCAGA 57.012 45.000 10.83 4.85 0.00 3.27
96 97 3.482156 AACTCTAATGGCGCATCAGAT 57.518 42.857 10.83 0.00 0.00 2.90
97 98 3.482156 ACTCTAATGGCGCATCAGATT 57.518 42.857 10.83 1.39 0.00 2.40
101 102 4.256110 TCTAATGGCGCATCAGATTATGG 58.744 43.478 10.83 0.00 0.00 2.74
103 104 1.596603 TGGCGCATCAGATTATGGTG 58.403 50.000 10.83 0.00 43.46 4.17
138 139 3.830744 ACTAATGGTACTAATGGCGCA 57.169 42.857 10.83 0.00 0.00 6.09
139 140 3.463944 ACTAATGGTACTAATGGCGCAC 58.536 45.455 10.83 0.00 0.00 5.34
140 141 1.675552 AATGGTACTAATGGCGCACC 58.324 50.000 10.83 6.82 0.00 5.01
141 142 8.149101 ATACTAATGGTACTAATGGCGCACCA 62.149 42.308 14.90 14.90 43.10 4.17
149 150 3.985877 TGGCGCACCATCTTTCTG 58.014 55.556 10.83 0.00 42.67 3.02
150 151 1.675310 TGGCGCACCATCTTTCTGG 60.675 57.895 10.83 0.00 42.67 3.86
157 158 1.675310 CCATCTTTCTGGTGCGCCA 60.675 57.895 19.93 19.93 43.73 5.69
159 160 0.813184 CATCTTTCTGGTGCGCCATT 59.187 50.000 21.54 0.00 45.05 3.16
160 161 2.016318 CATCTTTCTGGTGCGCCATTA 58.984 47.619 21.54 8.54 45.05 1.90
161 162 1.737838 TCTTTCTGGTGCGCCATTAG 58.262 50.000 21.54 16.53 45.05 1.73
162 163 1.003118 TCTTTCTGGTGCGCCATTAGT 59.997 47.619 21.54 0.00 45.05 2.24
163 164 1.131126 CTTTCTGGTGCGCCATTAGTG 59.869 52.381 21.54 7.89 45.05 2.74
164 165 0.036164 TTCTGGTGCGCCATTAGTGT 59.964 50.000 21.54 0.00 45.05 3.55
166 167 0.673333 CTGGTGCGCCATTAGTGTCA 60.673 55.000 21.54 0.00 45.05 3.58
167 168 0.250510 TGGTGCGCCATTAGTGTCAA 60.251 50.000 16.89 0.00 40.46 3.18
168 169 1.094785 GGTGCGCCATTAGTGTCAAT 58.905 50.000 12.58 0.00 34.09 2.57
172 173 2.279741 GCGCCATTAGTGTCAATCTCA 58.720 47.619 0.00 0.00 0.00 3.27
173 174 2.874701 GCGCCATTAGTGTCAATCTCAT 59.125 45.455 0.00 0.00 0.00 2.90
176 177 5.532557 CGCCATTAGTGTCAATCTCATCTA 58.467 41.667 0.00 0.00 0.00 1.98
177 178 6.162079 CGCCATTAGTGTCAATCTCATCTAT 58.838 40.000 0.00 0.00 0.00 1.98
178 179 7.315890 CGCCATTAGTGTCAATCTCATCTATA 58.684 38.462 0.00 0.00 0.00 1.31
179 180 7.487509 CGCCATTAGTGTCAATCTCATCTATAG 59.512 40.741 0.00 0.00 0.00 1.31
181 182 7.763528 CCATTAGTGTCAATCTCATCTATAGCC 59.236 40.741 0.00 0.00 0.00 3.93
182 183 5.736951 AGTGTCAATCTCATCTATAGCCC 57.263 43.478 0.00 0.00 0.00 5.19
183 184 5.401750 AGTGTCAATCTCATCTATAGCCCT 58.598 41.667 0.00 0.00 0.00 5.19
184 185 5.843421 AGTGTCAATCTCATCTATAGCCCTT 59.157 40.000 0.00 0.00 0.00 3.95
185 186 6.328672 AGTGTCAATCTCATCTATAGCCCTTT 59.671 38.462 0.00 0.00 0.00 3.11
186 187 6.995091 GTGTCAATCTCATCTATAGCCCTTTT 59.005 38.462 0.00 0.00 0.00 2.27
187 188 7.172361 GTGTCAATCTCATCTATAGCCCTTTTC 59.828 40.741 0.00 0.00 0.00 2.29
189 190 6.560304 TCAATCTCATCTATAGCCCTTTTCCT 59.440 38.462 0.00 0.00 0.00 3.36
190 191 7.734865 TCAATCTCATCTATAGCCCTTTTCCTA 59.265 37.037 0.00 0.00 0.00 2.94
191 192 7.732222 ATCTCATCTATAGCCCTTTTCCTAG 57.268 40.000 0.00 0.00 0.00 3.02
192 193 6.625267 TCTCATCTATAGCCCTTTTCCTAGT 58.375 40.000 0.00 0.00 0.00 2.57
193 194 7.766628 TCTCATCTATAGCCCTTTTCCTAGTA 58.233 38.462 0.00 0.00 0.00 1.82
195 196 7.536625 TCATCTATAGCCCTTTTCCTAGTAGT 58.463 38.462 0.00 0.00 0.00 2.73
196 197 7.451877 TCATCTATAGCCCTTTTCCTAGTAGTG 59.548 40.741 0.00 0.00 0.00 2.74
197 198 4.691326 ATAGCCCTTTTCCTAGTAGTGC 57.309 45.455 0.00 0.00 0.00 4.40
198 199 2.552367 AGCCCTTTTCCTAGTAGTGCT 58.448 47.619 0.00 0.00 0.00 4.40
199 200 2.913617 AGCCCTTTTCCTAGTAGTGCTT 59.086 45.455 0.00 0.00 0.00 3.91
200 201 3.055021 AGCCCTTTTCCTAGTAGTGCTTC 60.055 47.826 0.00 0.00 0.00 3.86
201 202 3.055021 GCCCTTTTCCTAGTAGTGCTTCT 60.055 47.826 0.00 0.00 0.00 2.85
1765 2156 9.452287 TTTTTACCCTATAGACGCACTTTATTT 57.548 29.630 0.00 0.00 0.00 1.40
1767 2158 9.533253 TTTACCCTATAGACGCACTTTATTTAC 57.467 33.333 0.00 0.00 0.00 2.01
1768 2159 7.357429 ACCCTATAGACGCACTTTATTTACT 57.643 36.000 0.00 0.00 0.00 2.24
1769 2160 7.789026 ACCCTATAGACGCACTTTATTTACTT 58.211 34.615 0.00 0.00 0.00 2.24
1770 2161 8.262933 ACCCTATAGACGCACTTTATTTACTTT 58.737 33.333 0.00 0.00 0.00 2.66
1771 2162 9.754382 CCCTATAGACGCACTTTATTTACTTTA 57.246 33.333 0.00 0.00 0.00 1.85
1791 2182 8.390854 ACTTTATTACTACTCGACAATGTTCG 57.609 34.615 0.00 0.00 40.53 3.95
1825 2216 2.293598 AGATCAGGGGGATTGGAAGT 57.706 50.000 0.00 0.00 36.00 3.01
1856 2247 3.306019 GCGTCCAAAATCCAGACCAAAAT 60.306 43.478 0.00 0.00 0.00 1.82
1866 2257 2.878406 CCAGACCAAAATCGTGTTCAGT 59.122 45.455 0.00 0.00 0.00 3.41
1923 2314 7.769220 ACTTCAAAGATAAAGGAGCAATGATG 58.231 34.615 0.00 0.00 0.00 3.07
1956 2347 6.976925 CCATCAAATGTTGCTTTTATCTCCTC 59.023 38.462 0.00 0.00 0.00 3.71
1965 2356 3.122613 GCTTTTATCTCCTCGATGATGCG 59.877 47.826 6.12 0.00 33.48 4.73
2015 2407 8.321353 TGTGTATCTCATTTAGAACATTCCAGT 58.679 33.333 0.00 0.00 37.89 4.00
2031 2423 1.955778 CCAGTGTGCCAACTCATTTCA 59.044 47.619 0.00 0.00 0.00 2.69
2044 2436 1.876799 TCATTTCATCCACGCGTGTTT 59.123 42.857 34.81 20.46 0.00 2.83
2104 2499 1.004320 ACCCAAACAGACGCGCATA 60.004 52.632 5.73 0.00 0.00 3.14
2148 2543 2.763448 CCCATTCCGGCCTAAATTTGAA 59.237 45.455 0.00 0.00 0.00 2.69
2158 2553 5.566627 CGGCCTAAATTTGAACCTCATTTGT 60.567 40.000 0.00 0.00 0.00 2.83
2161 2556 6.366061 GCCTAAATTTGAACCTCATTTGTGTC 59.634 38.462 0.00 0.00 0.00 3.67
2205 2684 4.208686 GACGCCCGCCTACTCCTG 62.209 72.222 0.00 0.00 0.00 3.86
2279 2758 1.228459 AAAAACTCCCGCCCACTCC 60.228 57.895 0.00 0.00 0.00 3.85
2280 2759 2.708593 AAAAACTCCCGCCCACTCCC 62.709 60.000 0.00 0.00 0.00 4.30
2402 2886 2.813908 CCGCGCCACCTACAAGAC 60.814 66.667 0.00 0.00 0.00 3.01
2405 2889 2.813908 CGCCACCTACAAGACGGC 60.814 66.667 0.00 0.00 39.45 5.68
2407 2891 2.967397 CCACCTACAAGACGGCGA 59.033 61.111 16.62 0.00 0.00 5.54
2451 2935 3.206150 GACAGCAGGTGTTTTTCTCTGA 58.794 45.455 6.72 0.00 40.56 3.27
2454 2938 4.646492 ACAGCAGGTGTTTTTCTCTGAAAT 59.354 37.500 0.00 0.00 34.94 2.17
2465 2949 8.442384 TGTTTTTCTCTGAAATTTTGCAAGAAC 58.558 29.630 0.00 0.00 0.00 3.01
2471 2955 6.042143 TCTGAAATTTTGCAAGAACCTCAAC 58.958 36.000 0.00 0.00 0.00 3.18
2475 2960 6.607735 AATTTTGCAAGAACCTCAACATTG 57.392 33.333 0.00 0.00 0.00 2.82
2491 2976 3.905153 TTGGAGGAGCTCTCGCCCA 62.905 63.158 14.64 12.46 43.34 5.36
2495 2980 0.321653 GAGGAGCTCTCGCCCAAAAA 60.322 55.000 14.64 0.00 36.60 1.94
2538 4774 7.491682 AGTTTTGTGCAATGTTTCTTCATAGT 58.508 30.769 0.00 0.00 0.00 2.12
2580 4822 4.990257 GCTAGCAGAATGAAGCAAATCAA 58.010 39.130 10.63 0.00 43.51 2.57
2584 4826 5.168569 AGCAGAATGAAGCAAATCAATGTG 58.831 37.500 0.00 0.00 39.69 3.21
2619 4861 6.376299 ACATGTGACACAAGAATATGAAGCAT 59.624 34.615 17.19 0.00 0.00 3.79
2641 4883 5.948162 CATTAAGATGATATTGGGGACCTGG 59.052 44.000 0.00 0.00 42.45 4.45
2732 4974 2.933906 CGAGTTAATACGGGTGCAACAT 59.066 45.455 3.06 0.00 39.98 2.71
2738 4980 0.958382 TACGGGTGCAACATGGAAGC 60.958 55.000 3.06 0.00 39.98 3.86
2743 4985 2.550639 GGGTGCAACATGGAAGCAAATT 60.551 45.455 3.06 0.00 40.35 1.82
2753 4995 0.881118 GAAGCAAATTGGCTGGTCGA 59.119 50.000 8.45 0.00 45.07 4.20
2908 5150 9.520204 CACCTTATATATTTTCAAAACAGCCTG 57.480 33.333 0.00 0.00 0.00 4.85
2993 5235 0.417841 ACCTAGCCTTGGGAAGAGGA 59.582 55.000 0.00 0.00 36.33 3.71
3117 5359 8.221801 GATAGCTTGTCTATCTTTATGTCGTG 57.778 38.462 0.00 0.00 46.50 4.35
3122 5364 7.400599 TTGTCTATCTTTATGTCGTGTACCT 57.599 36.000 0.00 0.00 0.00 3.08
3124 5366 6.600427 TGTCTATCTTTATGTCGTGTACCTCA 59.400 38.462 0.00 0.00 0.00 3.86
3165 5407 3.762288 AGTGTCCGAGACAGCAGTAATAA 59.238 43.478 6.94 0.00 43.57 1.40
3168 5410 4.142447 TGTCCGAGACAGCAGTAATAAGAC 60.142 45.833 3.02 0.00 37.67 3.01
3200 5442 5.316770 GTGCAACTCTTGTGATCGAAATAC 58.683 41.667 0.00 0.00 0.00 1.89
3204 5446 2.852413 CTCTTGTGATCGAAATACGCGT 59.148 45.455 19.17 19.17 42.26 6.01
3209 5451 3.184783 TGTGATCGAAATACGCGTGTTTT 59.815 39.130 30.28 24.03 42.26 2.43
3210 5452 3.532977 GTGATCGAAATACGCGTGTTTTG 59.467 43.478 31.53 31.53 42.26 2.44
3211 5453 2.580729 TCGAAATACGCGTGTTTTGG 57.419 45.000 34.23 26.99 42.26 3.28
3257 5499 4.325119 AGCTGCTAAGAAGATATGCCATG 58.675 43.478 0.00 0.00 0.00 3.66
3288 5530 3.298619 AGCTGACTCTAGCATCATCAGT 58.701 45.455 0.00 0.00 46.07 3.41
3293 5535 4.579753 TGACTCTAGCATCATCAGTCTGAG 59.420 45.833 8.82 1.25 35.50 3.35
3294 5536 3.318839 ACTCTAGCATCATCAGTCTGAGC 59.681 47.826 8.82 6.21 0.00 4.26
3508 7098 0.331278 ACGAGCCATGGGAAAATCCA 59.669 50.000 15.13 0.00 38.64 3.41
3624 7214 3.704566 TGCCTCGGAGTTGTGTATAGATT 59.295 43.478 4.02 0.00 0.00 2.40
3629 7219 5.348986 TCGGAGTTGTGTATAGATTCAAGC 58.651 41.667 0.00 0.00 0.00 4.01
3693 7283 4.354087 AGTTCACAAGTAGGGGAAGGAAAT 59.646 41.667 0.00 0.00 0.00 2.17
3822 7418 1.478105 GGTCTGGGTGCAATTGAATCC 59.522 52.381 9.04 9.04 0.00 3.01
3841 7437 3.743132 TCCCCCTAAGTGGTCATACATT 58.257 45.455 0.00 0.00 0.00 2.71
3842 7438 4.898268 TCCCCCTAAGTGGTCATACATTA 58.102 43.478 0.00 0.00 0.00 1.90
3843 7439 5.482580 TCCCCCTAAGTGGTCATACATTAT 58.517 41.667 0.00 0.00 0.00 1.28
3844 7440 6.636003 TCCCCCTAAGTGGTCATACATTATA 58.364 40.000 0.00 0.00 0.00 0.98
3845 7441 7.260891 TCCCCCTAAGTGGTCATACATTATAT 58.739 38.462 0.00 0.00 0.00 0.86
3851 7447 7.750229 AAGTGGTCATACATTATATTGCTGG 57.250 36.000 0.00 0.00 0.00 4.85
3909 7505 6.510879 AAAAACTAAGCTACATAAGGGCAC 57.489 37.500 0.00 0.00 0.00 5.01
3953 7549 9.836864 AAAAGCAAAAGAGGAGTAAAATTTCAT 57.163 25.926 0.00 0.00 0.00 2.57
3980 7576 3.071479 CTCTTTTAAACCGCACCTAGCA 58.929 45.455 0.00 0.00 46.13 3.49
4043 7640 1.665735 CGAAAATTTGGTCCGTGGCTG 60.666 52.381 0.00 0.00 0.00 4.85
4050 7647 0.179015 TGGTCCGTGGCTGCTAAAAA 60.179 50.000 0.00 0.00 0.00 1.94
4059 7656 4.556501 CGTGGCTGCTAAAAATTCTCAACA 60.557 41.667 0.00 0.00 0.00 3.33
4081 7678 0.321298 GCCCAGCCGAGTAAACTTCA 60.321 55.000 0.00 0.00 0.00 3.02
4096 7693 8.281212 AGTAAACTTCACAACACATCTTTCTT 57.719 30.769 0.00 0.00 0.00 2.52
4105 7702 0.673644 ACATCTTTCTTCCACCCGCG 60.674 55.000 0.00 0.00 0.00 6.46
4124 7721 4.125695 GACGCCGTAGTTCCCGCT 62.126 66.667 0.00 0.00 0.00 5.52
4125 7722 2.751436 ACGCCGTAGTTCCCGCTA 60.751 61.111 0.00 0.00 0.00 4.26
4160 7757 1.134580 ACCAACATCGCCTCTGATGAG 60.135 52.381 10.45 3.15 46.98 2.90
4169 7766 1.473080 GCCTCTGATGAGAGCAACTCC 60.473 57.143 3.27 0.00 44.11 3.85
4207 7804 2.933287 ACCCTTCCGCCACCATCA 60.933 61.111 0.00 0.00 0.00 3.07
4218 7815 1.449423 CACCATCACCGCCGATGAA 60.449 57.895 12.42 0.00 44.67 2.57
4241 7838 0.613777 AACTCCGGACAGAATGGGTC 59.386 55.000 0.00 0.00 43.62 4.46
4262 7859 1.460273 CCAAAACCCTTCCACCACCG 61.460 60.000 0.00 0.00 0.00 4.94
4300 7897 3.176433 TAAACCACCCCCGCACCA 61.176 61.111 0.00 0.00 0.00 4.17
4362 7961 2.030562 GGTCCACCACACCGACTG 59.969 66.667 0.00 0.00 35.64 3.51
4486 8093 1.622811 TGCCCCAAAGCAACCAAATAG 59.377 47.619 0.00 0.00 40.56 1.73
4604 8211 7.786178 TTTTTATGTGATGGTTATCCTCTCG 57.214 36.000 0.00 0.00 32.09 4.04
4610 8217 4.215827 GTGATGGTTATCCTCTCGTATCGT 59.784 45.833 0.00 0.00 32.09 3.73
4611 8218 4.215613 TGATGGTTATCCTCTCGTATCGTG 59.784 45.833 0.00 0.00 32.09 4.35
4616 8223 1.015109 TCCTCTCGTATCGTGTGAGC 58.985 55.000 0.00 0.00 0.00 4.26
4636 8243 5.408299 TGAGCATATCGAATTTATTGTCGGG 59.592 40.000 0.00 0.00 37.84 5.14
4671 8279 6.261118 GCTTATGTAGCTTTTGACATTCCAG 58.739 40.000 5.21 2.10 46.77 3.86
4691 8299 8.700439 TTCCAGTTTTTGTAAGCCTAACTTAT 57.300 30.769 0.00 0.00 42.75 1.73
4702 8310 8.421784 TGTAAGCCTAACTTATGTATTCTCCAG 58.578 37.037 0.00 0.00 42.75 3.86
4721 8335 6.100279 TCTCCAGAATATGAAGCAATGGTAGT 59.900 38.462 0.00 0.00 0.00 2.73
4722 8336 7.290014 TCTCCAGAATATGAAGCAATGGTAGTA 59.710 37.037 0.00 0.00 0.00 1.82
4757 8371 9.491675 TGTTAAAATAAGACGTTACAGGATTCA 57.508 29.630 0.00 0.00 0.00 2.57
4841 8455 4.328536 TGCAATGGACGTTAACATTAGGT 58.671 39.130 6.39 0.00 35.67 3.08
4861 8475 5.070001 AGGTGGTATATTAATTGCACGCAT 58.930 37.500 0.00 0.00 0.00 4.73
4879 8493 8.141909 TGCACGCATATATTAGGTAGGATATTC 58.858 37.037 0.00 0.00 0.00 1.75
4903 8517 8.795786 TCTTTGTGTGCTAATGTTTTGATTAC 57.204 30.769 0.00 0.00 0.00 1.89
4971 8600 0.665068 CGTCGGTCGTTGGATTGACA 60.665 55.000 0.00 0.00 36.83 3.58
4983 8612 4.044946 TGGATTGACATGGTTTGATGGA 57.955 40.909 0.00 0.00 0.00 3.41
4999 8628 7.711339 GGTTTGATGGACGAGATTACTAGAATT 59.289 37.037 0.00 0.00 0.00 2.17
5096 8750 3.369147 AGCTCGATCAACAATTGAAGTCG 59.631 43.478 13.59 14.92 43.95 4.18
5138 8792 0.106868 TCTTGAGCTGCATCCATGGG 60.107 55.000 13.02 0.00 0.00 4.00
5143 8797 2.129785 GCTGCATCCATGGGGTTCC 61.130 63.158 13.02 0.00 34.93 3.62
5236 8890 3.641436 ACCGAAGATAGGTATGCACATCA 59.359 43.478 0.00 0.00 40.80 3.07
5358 9012 3.512516 GCAGATTGCCCGTCAGCC 61.513 66.667 0.00 0.00 37.42 4.85
5406 9060 7.458397 ACTGGAGGAACAAGATATGTAACAAA 58.542 34.615 0.00 0.00 42.99 2.83
5471 9125 3.528370 CGGCCAGGAGACCCGTAG 61.528 72.222 2.24 0.00 37.36 3.51
5661 9316 4.843728 TCTGGCCATGTAAACCTAGAAAG 58.156 43.478 5.51 0.00 0.00 2.62
5752 9408 6.386927 ACCATGGTCTCATTTTGGATCTAGTA 59.613 38.462 13.00 0.00 0.00 1.82
5779 9436 6.826893 AATGGTTTTTGTCTTGATGAAACG 57.173 33.333 0.00 0.00 32.50 3.60
5800 9457 6.980051 ACGATCTTTGAAGTATACCAAACC 57.020 37.500 0.00 0.00 0.00 3.27
5808 9466 8.763984 TTTGAAGTATACCAAACCCTACAAAA 57.236 30.769 0.00 0.00 0.00 2.44
5837 9495 4.390909 GGTTCTGGTTATTATTATCGGCCG 59.609 45.833 22.12 22.12 0.00 6.13
5841 9499 5.421056 TCTGGTTATTATTATCGGCCGATCT 59.579 40.000 42.11 30.85 36.17 2.75
5898 9556 6.723298 GCTGGTGCTATATACTATCTGGAT 57.277 41.667 0.00 0.00 36.03 3.41
5899 9557 7.118496 GCTGGTGCTATATACTATCTGGATT 57.882 40.000 0.00 0.00 36.03 3.01
5900 9558 7.206687 GCTGGTGCTATATACTATCTGGATTC 58.793 42.308 0.00 0.00 36.03 2.52
5901 9559 7.069331 GCTGGTGCTATATACTATCTGGATTCT 59.931 40.741 0.00 0.00 36.03 2.40
5902 9560 8.901472 TGGTGCTATATACTATCTGGATTCTT 57.099 34.615 0.00 0.00 0.00 2.52
5903 9561 9.326489 TGGTGCTATATACTATCTGGATTCTTT 57.674 33.333 0.00 0.00 0.00 2.52
5940 9599 6.959639 AATGGCTATGGTTGTGTATAAAGG 57.040 37.500 0.00 0.00 0.00 3.11
5955 9614 9.141400 TGTGTATAAAGGTTTGTTTTGTTCAAC 57.859 29.630 0.00 0.00 0.00 3.18
5958 9617 9.361315 GTATAAAGGTTTGTTTTGTTCAACTGT 57.639 29.630 0.00 0.00 0.00 3.55
5961 9620 5.606505 AGGTTTGTTTTGTTCAACTGTTGT 58.393 33.333 19.12 0.00 0.00 3.32
5979 9638 2.672098 TGTTGGGGTGCTGTATTTTGT 58.328 42.857 0.00 0.00 0.00 2.83
6021 9681 7.230849 TCCTTTGAAGTGCAATATGTTTCAT 57.769 32.000 0.00 0.00 36.15 2.57
6089 9749 6.154021 AGCATCCTCTGATTGTGCTTTTTAAT 59.846 34.615 5.36 0.00 43.03 1.40
6091 9751 7.009907 GCATCCTCTGATTGTGCTTTTTAATTC 59.990 37.037 0.00 0.00 33.25 2.17
6093 9753 8.125978 TCCTCTGATTGTGCTTTTTAATTCAT 57.874 30.769 0.00 0.00 0.00 2.57
6094 9754 8.246180 TCCTCTGATTGTGCTTTTTAATTCATC 58.754 33.333 0.00 0.00 0.00 2.92
6096 9756 7.894708 TCTGATTGTGCTTTTTAATTCATCCA 58.105 30.769 0.00 0.00 0.00 3.41
6097 9757 8.030692 TCTGATTGTGCTTTTTAATTCATCCAG 58.969 33.333 0.00 0.00 0.00 3.86
6098 9758 7.669427 TGATTGTGCTTTTTAATTCATCCAGT 58.331 30.769 0.00 0.00 0.00 4.00
6194 9859 1.670949 GCAGAGTGAGCTCGGATGGA 61.671 60.000 9.64 0.00 46.03 3.41
6214 9879 4.975147 TGGACCCAGGTGTATATCAGAATT 59.025 41.667 0.00 0.00 0.00 2.17
6236 9901 5.804944 TTGGAAAATCATGCTTCCTTTGA 57.195 34.783 17.01 0.95 41.52 2.69
6293 9958 5.465390 GGTGTTTGCTTTCTTAATCCAAACC 59.535 40.000 10.78 4.25 42.59 3.27
6294 9959 6.045955 GTGTTTGCTTTCTTAATCCAAACCA 58.954 36.000 10.78 0.00 42.59 3.67
6295 9960 6.200854 GTGTTTGCTTTCTTAATCCAAACCAG 59.799 38.462 10.78 0.00 42.59 4.00
6355 10020 1.561542 TCAAGAGAGCATTTCCTCCCC 59.438 52.381 0.00 0.00 32.17 4.81
6362 10027 3.395941 AGAGCATTTCCTCCCCGATAAAT 59.604 43.478 0.00 0.00 32.17 1.40
6399 10064 7.841915 AAGTGGTCAAATGTTTTCGAAAAAT 57.158 28.000 24.04 16.11 0.00 1.82
6402 10067 7.547370 AGTGGTCAAATGTTTTCGAAAAATTCA 59.453 29.630 24.04 17.88 0.00 2.57
6403 10068 8.334632 GTGGTCAAATGTTTTCGAAAAATTCAT 58.665 29.630 24.04 19.19 0.00 2.57
6433 10099 3.487942 TGTGAATGTTCGTGTTAGTGTCG 59.512 43.478 0.00 0.00 0.00 4.35
6462 10128 6.401367 GCATGCTTAAAGATTTTCGTGCAAAT 60.401 34.615 11.37 0.00 32.88 2.32
6482 10149 0.459585 GGAGCATAGTGTTTCGCCGA 60.460 55.000 0.00 0.00 0.00 5.54
6487 10154 2.095213 GCATAGTGTTTCGCCGATGAAA 59.905 45.455 0.00 0.00 35.58 2.69
6502 10169 5.872070 GCCGATGAAAAATACAAATTTGGGA 59.128 36.000 21.74 10.00 35.46 4.37
6504 10171 7.708752 GCCGATGAAAAATACAAATTTGGGATA 59.291 33.333 21.74 6.32 35.46 2.59
6512 10179 9.500785 AAAATACAAATTTGGGATAACACTTGG 57.499 29.630 21.74 0.00 35.46 3.61
6513 10180 7.790782 ATACAAATTTGGGATAACACTTGGT 57.209 32.000 21.74 0.00 0.00 3.67
6514 10181 5.852827 ACAAATTTGGGATAACACTTGGTG 58.147 37.500 21.74 0.00 39.75 4.17
6530 10197 8.785329 ACACTTGGTGTTCAAATTTATTTTGT 57.215 26.923 0.00 0.00 45.08 2.83
6531 10198 9.225436 ACACTTGGTGTTCAAATTTATTTTGTT 57.775 25.926 0.00 0.00 45.08 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.325028 TTTAACTAGTGCGTCTGTCCAA 57.675 40.909 0.00 0.00 0.00 3.53
1 2 4.325028 TTTTAACTAGTGCGTCTGTCCA 57.675 40.909 0.00 0.00 0.00 4.02
23 24 5.810074 GGTGCGCCATTAGTATCAAATTTTT 59.190 36.000 12.58 0.00 34.09 1.94
24 25 5.348164 GGTGCGCCATTAGTATCAAATTTT 58.652 37.500 12.58 0.00 34.09 1.82
25 26 4.202111 GGGTGCGCCATTAGTATCAAATTT 60.202 41.667 19.98 0.00 36.17 1.82
27 28 2.884639 GGGTGCGCCATTAGTATCAAAT 59.115 45.455 19.98 0.00 36.17 2.32
28 29 2.294074 GGGTGCGCCATTAGTATCAAA 58.706 47.619 19.98 0.00 36.17 2.69
29 30 1.808512 CGGGTGCGCCATTAGTATCAA 60.809 52.381 19.98 0.00 36.17 2.57
30 31 0.249699 CGGGTGCGCCATTAGTATCA 60.250 55.000 19.98 0.00 36.17 2.15
31 32 0.249741 ACGGGTGCGCCATTAGTATC 60.250 55.000 19.98 0.00 36.17 2.24
32 33 1.000506 CTACGGGTGCGCCATTAGTAT 59.999 52.381 19.98 0.00 36.17 2.12
33 34 0.386476 CTACGGGTGCGCCATTAGTA 59.614 55.000 19.98 14.44 36.17 1.82
36 37 2.202960 GCTACGGGTGCGCCATTA 60.203 61.111 19.98 7.28 36.17 1.90
37 38 3.697439 ATGCTACGGGTGCGCCATT 62.697 57.895 19.98 6.36 36.17 3.16
57 58 5.350640 AGAGTTTAAACTACTAATGGCGCAC 59.649 40.000 20.58 4.05 39.88 5.34
59 60 7.529880 TTAGAGTTTAAACTACTAATGGCGC 57.470 36.000 20.58 0.00 39.88 6.53
63 64 8.062448 GCGCCATTAGAGTTTAAACTACTAATG 58.938 37.037 34.67 34.67 44.21 1.90
64 65 7.767198 TGCGCCATTAGAGTTTAAACTACTAAT 59.233 33.333 26.69 26.69 39.88 1.73
67 68 5.484715 TGCGCCATTAGAGTTTAAACTACT 58.515 37.500 20.58 19.11 39.88 2.57
68 69 5.789710 TGCGCCATTAGAGTTTAAACTAC 57.210 39.130 20.58 13.70 39.88 2.73
69 70 6.110033 TGATGCGCCATTAGAGTTTAAACTA 58.890 36.000 20.58 6.31 39.88 2.24
70 71 4.941263 TGATGCGCCATTAGAGTTTAAACT 59.059 37.500 20.67 20.67 43.16 2.66
72 73 5.182487 TCTGATGCGCCATTAGAGTTTAAA 58.818 37.500 4.18 0.00 32.77 1.52
73 74 4.765273 TCTGATGCGCCATTAGAGTTTAA 58.235 39.130 4.18 0.00 32.77 1.52
74 75 4.400529 TCTGATGCGCCATTAGAGTTTA 57.599 40.909 4.18 0.00 32.77 2.01
76 77 2.988010 TCTGATGCGCCATTAGAGTT 57.012 45.000 4.18 0.00 32.77 3.01
77 78 3.482156 AATCTGATGCGCCATTAGAGT 57.518 42.857 4.18 6.83 39.27 3.24
78 79 4.331992 CCATAATCTGATGCGCCATTAGAG 59.668 45.833 4.18 0.00 39.27 2.43
79 80 4.256110 CCATAATCTGATGCGCCATTAGA 58.744 43.478 4.18 10.60 39.98 2.10
80 81 4.005650 ACCATAATCTGATGCGCCATTAG 58.994 43.478 4.18 5.13 0.00 1.73
81 82 3.752747 CACCATAATCTGATGCGCCATTA 59.247 43.478 4.18 0.11 0.00 1.90
82 83 2.555325 CACCATAATCTGATGCGCCATT 59.445 45.455 4.18 0.00 0.00 3.16
83 84 2.156917 CACCATAATCTGATGCGCCAT 58.843 47.619 4.18 0.00 0.00 4.40
84 85 1.596603 CACCATAATCTGATGCGCCA 58.403 50.000 4.18 0.00 0.00 5.69
88 89 0.239347 GGCGCACCATAATCTGATGC 59.761 55.000 10.83 0.00 35.26 3.91
89 90 1.596603 TGGCGCACCATAATCTGATG 58.403 50.000 10.83 0.00 42.67 3.07
95 96 8.920174 TAGTATATACTAATGGCGCACCATAAT 58.080 33.333 18.36 1.87 45.53 1.28
96 97 8.296211 TAGTATATACTAATGGCGCACCATAA 57.704 34.615 18.36 0.00 45.53 1.90
97 98 7.885009 TAGTATATACTAATGGCGCACCATA 57.115 36.000 18.36 0.00 45.53 2.74
111 112 8.411683 GCGCCATTAGTACCATTAGTATATACT 58.588 37.037 19.07 19.07 40.24 2.12
112 113 8.192774 TGCGCCATTAGTACCATTAGTATATAC 58.807 37.037 4.18 4.60 32.28 1.47
113 114 8.192774 GTGCGCCATTAGTACCATTAGTATATA 58.807 37.037 4.18 0.00 32.28 0.86
115 116 6.392354 GTGCGCCATTAGTACCATTAGTATA 58.608 40.000 4.18 0.00 32.28 1.47
116 117 5.235516 GTGCGCCATTAGTACCATTAGTAT 58.764 41.667 4.18 0.00 32.28 2.12
117 118 4.501915 GGTGCGCCATTAGTACCATTAGTA 60.502 45.833 12.58 0.00 42.73 1.82
118 119 3.463944 GTGCGCCATTAGTACCATTAGT 58.536 45.455 4.18 0.00 0.00 2.24
119 120 2.806244 GGTGCGCCATTAGTACCATTAG 59.194 50.000 12.58 0.00 42.73 1.73
120 121 2.170817 TGGTGCGCCATTAGTACCATTA 59.829 45.455 16.89 0.00 46.69 1.90
121 122 1.065053 TGGTGCGCCATTAGTACCATT 60.065 47.619 16.89 0.00 46.69 3.16
122 123 0.544223 TGGTGCGCCATTAGTACCAT 59.456 50.000 16.89 0.00 46.69 3.55
123 124 4.946038 GGTGCGCCATTAGTACCA 57.054 55.556 12.58 0.00 42.73 3.25
124 125 4.946038 TGGTGCGCCATTAGTACC 57.054 55.556 16.89 4.06 43.36 3.34
139 140 1.675310 TGGCGCACCAGAAAGATGG 60.675 57.895 10.83 0.00 42.67 3.51
140 141 3.985877 TGGCGCACCAGAAAGATG 58.014 55.556 10.83 0.00 42.67 2.90
149 150 1.064060 GATTGACACTAATGGCGCACC 59.936 52.381 10.83 0.00 36.14 5.01
150 151 2.009774 AGATTGACACTAATGGCGCAC 58.990 47.619 10.83 0.00 36.14 5.34
151 152 2.279741 GAGATTGACACTAATGGCGCA 58.720 47.619 10.83 0.00 36.14 6.09
152 153 2.279741 TGAGATTGACACTAATGGCGC 58.720 47.619 0.00 0.00 36.14 6.53
153 154 4.375272 AGATGAGATTGACACTAATGGCG 58.625 43.478 0.00 0.00 36.14 5.69
154 155 7.277539 GCTATAGATGAGATTGACACTAATGGC 59.722 40.741 3.21 0.00 0.00 4.40
157 158 7.677745 AGGGCTATAGATGAGATTGACACTAAT 59.322 37.037 3.21 0.00 0.00 1.73
159 160 6.556639 AGGGCTATAGATGAGATTGACACTA 58.443 40.000 3.21 0.00 0.00 2.74
160 161 5.401750 AGGGCTATAGATGAGATTGACACT 58.598 41.667 3.21 0.00 0.00 3.55
161 162 5.736951 AGGGCTATAGATGAGATTGACAC 57.263 43.478 3.21 0.00 0.00 3.67
162 163 6.753913 AAAGGGCTATAGATGAGATTGACA 57.246 37.500 3.21 0.00 0.00 3.58
163 164 6.652900 GGAAAAGGGCTATAGATGAGATTGAC 59.347 42.308 3.21 0.00 0.00 3.18
164 165 6.560304 AGGAAAAGGGCTATAGATGAGATTGA 59.440 38.462 3.21 0.00 0.00 2.57
166 167 7.737149 ACTAGGAAAAGGGCTATAGATGAGATT 59.263 37.037 3.21 0.00 0.00 2.40
167 168 7.252678 ACTAGGAAAAGGGCTATAGATGAGAT 58.747 38.462 3.21 0.00 0.00 2.75
168 169 6.625267 ACTAGGAAAAGGGCTATAGATGAGA 58.375 40.000 3.21 0.00 0.00 3.27
172 173 6.211785 GCACTACTAGGAAAAGGGCTATAGAT 59.788 42.308 3.21 0.00 36.70 1.98
173 174 5.539193 GCACTACTAGGAAAAGGGCTATAGA 59.461 44.000 3.21 0.00 36.70 1.98
176 177 4.691326 GCACTACTAGGAAAAGGGCTAT 57.309 45.455 0.00 0.00 36.70 2.97
178 179 2.552367 AGCACTACTAGGAAAAGGGCT 58.448 47.619 7.39 7.39 45.04 5.19
179 180 3.055021 AGAAGCACTACTAGGAAAAGGGC 60.055 47.826 0.00 0.00 40.04 5.19
181 182 5.794894 TGAAGAAGCACTACTAGGAAAAGG 58.205 41.667 0.00 0.00 0.00 3.11
182 183 6.959671 CTGAAGAAGCACTACTAGGAAAAG 57.040 41.667 0.00 0.00 0.00 2.27
197 198 2.796651 GCCATGCCGCTGAAGAAG 59.203 61.111 0.00 0.00 0.00 2.85
198 199 3.126879 CGCCATGCCGCTGAAGAA 61.127 61.111 0.00 0.00 0.00 2.52
1765 2156 9.494479 CGAACATTGTCGAGTAGTAATAAAGTA 57.506 33.333 0.00 0.00 43.86 2.24
1766 2157 8.025445 ACGAACATTGTCGAGTAGTAATAAAGT 58.975 33.333 13.15 0.00 43.86 2.66
1767 2158 8.390854 ACGAACATTGTCGAGTAGTAATAAAG 57.609 34.615 13.15 0.00 43.86 1.85
1768 2159 9.494479 CTACGAACATTGTCGAGTAGTAATAAA 57.506 33.333 13.15 0.00 43.86 1.40
1769 2160 8.124823 CCTACGAACATTGTCGAGTAGTAATAA 58.875 37.037 17.35 0.00 43.86 1.40
1770 2161 7.495606 TCCTACGAACATTGTCGAGTAGTAATA 59.504 37.037 17.35 5.50 43.86 0.98
1771 2162 6.317140 TCCTACGAACATTGTCGAGTAGTAAT 59.683 38.462 17.35 0.00 43.86 1.89
1781 2172 9.113876 CTTAATTGTTTTCCTACGAACATTGTC 57.886 33.333 0.00 0.00 35.85 3.18
1791 2182 6.321435 CCCCCTGATCTTAATTGTTTTCCTAC 59.679 42.308 0.00 0.00 0.00 3.18
1825 2216 2.552315 GGATTTTGGACGCTGTCTTTGA 59.448 45.455 8.26 0.00 32.47 2.69
1856 2247 3.845178 CACATAGCCTTACTGAACACGA 58.155 45.455 0.00 0.00 0.00 4.35
1896 2287 8.498054 TCATTGCTCCTTTATCTTTGAAGTAG 57.502 34.615 0.00 0.00 0.00 2.57
1923 2314 5.511234 AGCAACATTTGATGGCTAGATTC 57.489 39.130 0.00 0.00 32.09 2.52
1937 2328 6.115446 TCATCGAGGAGATAAAAGCAACATT 58.885 36.000 0.00 0.00 37.52 2.71
1956 2347 2.221799 CACATATGCACGCATCATCG 57.778 50.000 7.99 0.00 37.82 3.84
2015 2407 2.557924 GTGGATGAAATGAGTTGGCACA 59.442 45.455 0.00 0.00 0.00 4.57
2031 2423 0.030101 CCAAACAAACACGCGTGGAT 59.970 50.000 39.21 26.40 34.19 3.41
2044 2436 0.107800 TGTCCGTTTCGACCCAAACA 60.108 50.000 0.00 0.00 36.23 2.83
2148 2543 0.534203 AACGCCGACACAAATGAGGT 60.534 50.000 0.00 0.00 32.32 3.85
2229 2708 3.076916 GGAAATGGGGGTGGCTGC 61.077 66.667 0.00 0.00 0.00 5.25
2405 2889 4.735132 TCTTCTTGGGCGGCGTCG 62.735 66.667 4.29 4.29 39.81 5.12
2407 2891 2.358737 CTTCTTCTTGGGCGGCGT 60.359 61.111 9.37 0.00 0.00 5.68
2451 2935 6.038492 CCAATGTTGAGGTTCTTGCAAAATTT 59.962 34.615 0.00 0.00 29.44 1.82
2454 2938 4.161189 TCCAATGTTGAGGTTCTTGCAAAA 59.839 37.500 0.00 0.00 0.00 2.44
2465 2949 1.558756 AGAGCTCCTCCAATGTTGAGG 59.441 52.381 10.93 0.00 37.45 3.86
2496 2981 9.934190 GCACAAAACTTTGAATATTGATTTTGT 57.066 25.926 9.12 10.28 45.02 2.83
2497 2982 9.932699 TGCACAAAACTTTGAATATTGATTTTG 57.067 25.926 9.12 9.34 40.55 2.44
2514 2999 7.698836 ACTATGAAGAAACATTGCACAAAAC 57.301 32.000 0.00 0.00 0.00 2.43
2568 4810 4.522722 TGCATCACATTGATTTGCTTCA 57.477 36.364 4.01 0.00 34.28 3.02
2580 4822 3.626217 GTCACATGTCTCATGCATCACAT 59.374 43.478 0.00 2.79 40.66 3.21
2584 4826 3.004862 TGTGTCACATGTCTCATGCATC 58.995 45.455 0.18 0.00 0.00 3.91
2619 4861 5.231552 TCCAGGTCCCCAATATCATCTTAA 58.768 41.667 0.00 0.00 0.00 1.85
2641 4883 5.391312 ACTACCCAAACATTTGCTTCATC 57.609 39.130 0.00 0.00 36.86 2.92
2689 4931 9.482627 ACTCGAAATTAAGATTCTCCATCATAC 57.517 33.333 0.00 0.00 33.75 2.39
2692 4934 9.884636 TTAACTCGAAATTAAGATTCTCCATCA 57.115 29.630 0.00 0.00 33.75 3.07
2732 4974 0.968405 GACCAGCCAATTTGCTTCCA 59.032 50.000 0.32 0.00 40.32 3.53
2738 4980 1.522668 TCTGTCGACCAGCCAATTTG 58.477 50.000 14.12 0.00 41.25 2.32
2743 4985 0.531974 GTGTTTCTGTCGACCAGCCA 60.532 55.000 14.12 0.42 41.25 4.75
2753 4995 7.391148 AAACATACAAAGACTGTGTTTCTGT 57.609 32.000 2.96 3.39 39.20 3.41
2789 5031 9.114952 ACGGGAAAACATTTGTTTCAATTAAAT 57.885 25.926 8.98 0.00 46.47 1.40
2893 5135 2.167487 GTCACCCAGGCTGTTTTGAAAA 59.833 45.455 14.43 0.00 0.00 2.29
3017 5259 1.546029 GCTCGCCTTCCATTCCTTTTT 59.454 47.619 0.00 0.00 0.00 1.94
3021 5263 2.300967 TGGCTCGCCTTCCATTCCT 61.301 57.895 9.65 0.00 36.94 3.36
3022 5264 2.115291 GTGGCTCGCCTTCCATTCC 61.115 63.158 9.65 0.00 34.47 3.01
3023 5265 0.749454 ATGTGGCTCGCCTTCCATTC 60.749 55.000 9.65 0.00 34.47 2.67
3025 5267 0.767375 ATATGTGGCTCGCCTTCCAT 59.233 50.000 9.65 10.58 34.47 3.41
3026 5268 0.546122 AATATGTGGCTCGCCTTCCA 59.454 50.000 9.65 3.99 36.94 3.53
3028 5270 2.288666 TCAAATATGTGGCTCGCCTTC 58.711 47.619 9.65 3.43 36.94 3.46
3030 5272 1.475751 CCTCAAATATGTGGCTCGCCT 60.476 52.381 9.65 0.00 33.75 5.52
3032 5274 0.947244 CCCTCAAATATGTGGCTCGC 59.053 55.000 0.00 0.00 38.60 5.03
3034 5276 3.515602 ATCCCCTCAAATATGTGGCTC 57.484 47.619 0.00 0.00 38.60 4.70
3165 5407 3.085533 AGAGTTGCACTATCAGTCGTCT 58.914 45.455 0.00 0.00 0.00 4.18
3168 5410 3.366121 CACAAGAGTTGCACTATCAGTCG 59.634 47.826 0.00 0.00 0.00 4.18
3200 5442 0.312416 TGGAATTCCCAAAACACGCG 59.688 50.000 21.90 3.53 43.29 6.01
3210 5452 3.118261 TGCTGTCAGTCTATGGAATTCCC 60.118 47.826 21.90 5.81 34.29 3.97
3211 5453 3.873952 GTGCTGTCAGTCTATGGAATTCC 59.126 47.826 18.17 18.17 0.00 3.01
3257 5499 2.777832 AGAGTCAGCTTTGGATCACC 57.222 50.000 0.00 0.00 0.00 4.02
3288 5530 0.744281 TGTGTGTGTCTTCGCTCAGA 59.256 50.000 0.00 0.00 0.00 3.27
3293 5535 0.792640 CAGGATGTGTGTGTCTTCGC 59.207 55.000 0.00 0.00 0.00 4.70
3508 7098 6.491403 GGATAGCATTATTCCATCCAAACACT 59.509 38.462 0.00 0.00 36.09 3.55
3624 7214 3.646162 TCAAGTAAAGACCAGAGGCTTGA 59.354 43.478 0.00 0.00 38.60 3.02
3629 7219 2.303022 TGGCTCAAGTAAAGACCAGAGG 59.697 50.000 0.00 0.00 31.10 3.69
3693 7283 5.163622 GCAAATAAGCTCTAAGGACATGCAA 60.164 40.000 0.00 0.00 0.00 4.08
3822 7418 7.336931 GCAATATAATGTATGACCACTTAGGGG 59.663 40.741 0.00 0.00 43.89 4.79
3851 7447 3.186409 TGAAATAACAGTCTGTTGCGAGC 59.814 43.478 25.41 12.59 41.30 5.03
3909 7505 3.570912 TTTTAGGGGATCGGCTAAAGG 57.429 47.619 0.00 0.00 0.00 3.11
3912 7508 2.240160 TGCTTTTTAGGGGATCGGCTAA 59.760 45.455 0.00 0.00 0.00 3.09
3953 7549 5.370679 AGGTGCGGTTTAAAAGAGTAAAGA 58.629 37.500 0.00 0.00 0.00 2.52
3980 7576 7.757242 ATCCTCTAACCAATTTAGGACTTCT 57.243 36.000 0.00 0.00 39.10 2.85
4043 7640 4.237724 GGGCAGTGTTGAGAATTTTTAGC 58.762 43.478 0.00 0.00 0.00 3.09
4050 7647 0.610232 GGCTGGGCAGTGTTGAGAAT 60.610 55.000 0.00 0.00 0.00 2.40
4059 7656 1.003718 GTTTACTCGGCTGGGCAGT 60.004 57.895 0.00 0.00 0.00 4.40
4081 7678 3.222603 GGGTGGAAGAAAGATGTGTTGT 58.777 45.455 0.00 0.00 0.00 3.32
4113 7710 1.540580 GGAGGCAATAGCGGGAACTAC 60.541 57.143 0.00 0.00 43.41 2.73
4121 7718 2.588877 CGTGGGGAGGCAATAGCG 60.589 66.667 0.00 0.00 43.41 4.26
4124 7721 2.270850 GTGCGTGGGGAGGCAATA 59.729 61.111 0.00 0.00 41.46 1.90
4125 7722 4.740822 GGTGCGTGGGGAGGCAAT 62.741 66.667 0.00 0.00 41.46 3.56
4160 7757 1.280421 ACATTCCCTCTGGAGTTGCTC 59.720 52.381 0.00 0.00 43.07 4.26
4169 7766 3.344703 TGGCAACACATTCCCTCTG 57.655 52.632 0.00 0.00 46.17 3.35
4207 7804 3.419759 GTTGCGTTCATCGGCGGT 61.420 61.111 7.21 0.00 40.26 5.68
4218 7815 0.670546 CATTCTGTCCGGAGTTGCGT 60.671 55.000 3.06 0.00 0.00 5.24
4241 7838 1.830408 TGGTGGAAGGGTTTTGGCG 60.830 57.895 0.00 0.00 0.00 5.69
4273 7870 2.674084 GGTGGTTTACAGCGGCGAC 61.674 63.158 12.98 1.23 37.90 5.19
4281 7878 2.113562 GTGCGGGGGTGGTTTACA 59.886 61.111 0.00 0.00 0.00 2.41
4344 7943 2.445085 AGTCGGTGTGGTGGACCA 60.445 61.111 0.00 0.00 45.30 4.02
4386 7986 4.359434 TGCCACCTCACACATTTAGTAA 57.641 40.909 0.00 0.00 0.00 2.24
4591 8198 3.314357 CACACGATACGAGAGGATAACCA 59.686 47.826 0.00 0.00 32.11 3.67
4604 8211 6.453643 AAATTCGATATGCTCACACGATAC 57.546 37.500 0.00 0.00 33.25 2.24
4610 8217 6.073819 CCGACAATAAATTCGATATGCTCACA 60.074 38.462 0.00 0.00 37.43 3.58
4611 8218 6.299604 CCGACAATAAATTCGATATGCTCAC 58.700 40.000 0.00 0.00 37.43 3.51
4616 8223 6.618592 GCAGACCCGACAATAAATTCGATATG 60.619 42.308 0.00 0.00 37.43 1.78
4636 8243 2.208431 CTACATAAGCTGGCAGCAGAC 58.792 52.381 38.09 11.98 45.56 3.51
4691 8299 7.446319 CCATTGCTTCATATTCTGGAGAATACA 59.554 37.037 10.60 2.88 46.20 2.29
4696 8304 5.378230 ACCATTGCTTCATATTCTGGAGA 57.622 39.130 0.00 0.00 31.23 3.71
4879 8493 8.693504 CAGTAATCAAAACATTAGCACACAAAG 58.306 33.333 0.00 0.00 0.00 2.77
4971 8600 5.359194 AGTAATCTCGTCCATCAAACCAT 57.641 39.130 0.00 0.00 0.00 3.55
4999 8628 6.105397 AGTATAAAAGACCCAACGAGACAA 57.895 37.500 0.00 0.00 0.00 3.18
5058 8708 2.623416 CGAGCTACTGATATGTCACCCA 59.377 50.000 0.00 0.00 0.00 4.51
5096 8750 7.818642 AGAGAGCAATTACGTATGACCTATAC 58.181 38.462 0.00 0.00 38.62 1.47
5138 8792 2.951787 ATGATGACATGCTTGGGGAACC 60.952 50.000 4.44 0.00 42.86 3.62
5143 8797 2.804527 CGAGTATGATGACATGCTTGGG 59.195 50.000 4.44 0.00 46.32 4.12
5212 8866 2.135933 GTGCATACCTATCTTCGGTGC 58.864 52.381 0.00 0.00 35.98 5.01
5217 8871 6.749139 TGTACTGATGTGCATACCTATCTTC 58.251 40.000 0.00 0.00 33.97 2.87
5290 8944 7.230309 TGTCAAGATACCACATCAAATCAAACA 59.770 33.333 0.00 0.00 0.00 2.83
5377 9031 5.738909 ACATATCTTGTTCCTCCAGTTCTG 58.261 41.667 0.00 0.00 33.74 3.02
5471 9125 3.813596 CGTAGCAGGGGCATTCAC 58.186 61.111 0.00 0.00 44.61 3.18
5705 9361 6.889177 TGGTTGATGGTTGTATTGTGTATGAT 59.111 34.615 0.00 0.00 0.00 2.45
5779 9436 8.044908 TGTAGGGTTTGGTATACTTCAAAGATC 58.955 37.037 2.25 0.00 34.11 2.75
5800 9457 4.461198 ACCAGAACCAACTCTTTTGTAGG 58.539 43.478 0.00 0.00 0.00 3.18
5808 9466 7.931948 CCGATAATAATAACCAGAACCAACTCT 59.068 37.037 0.00 0.00 0.00 3.24
5841 9499 2.829720 AGCATAATTACCGGCCTCGATA 59.170 45.455 0.00 0.00 39.00 2.92
5845 9503 2.808543 CAAGAGCATAATTACCGGCCTC 59.191 50.000 0.00 0.00 0.00 4.70
5850 9508 7.306866 GCTTTCTAGACAAGAGCATAATTACCG 60.307 40.741 14.88 0.00 35.05 4.02
5906 9564 5.975693 ACCATAGCCATTTCGAAGAAAAA 57.024 34.783 0.00 0.00 45.90 1.94
5911 9570 3.440173 ACACAACCATAGCCATTTCGAAG 59.560 43.478 0.00 0.00 0.00 3.79
5919 9578 5.444744 ACCTTTATACACAACCATAGCCA 57.555 39.130 0.00 0.00 0.00 4.75
5940 9599 6.132724 CCAACAACAGTTGAACAAAACAAAC 58.867 36.000 20.56 0.00 44.15 2.93
5955 9614 1.909700 ATACAGCACCCCAACAACAG 58.090 50.000 0.00 0.00 0.00 3.16
5958 9617 3.034635 ACAAAATACAGCACCCCAACAA 58.965 40.909 0.00 0.00 0.00 2.83
5961 9620 7.397476 TCATAATTACAAAATACAGCACCCCAA 59.603 33.333 0.00 0.00 0.00 4.12
6051 9711 7.407393 TCAGAGGATGCTCTAATCATCATAG 57.593 40.000 17.19 0.55 39.31 2.23
6089 9749 4.623932 ACAGTTTGCTCTACTGGATGAA 57.376 40.909 14.77 0.00 45.67 2.57
6091 9751 5.295292 CCATAACAGTTTGCTCTACTGGATG 59.705 44.000 14.77 15.16 45.67 3.51
6093 9753 4.286032 ACCATAACAGTTTGCTCTACTGGA 59.714 41.667 14.77 5.89 45.67 3.86
6094 9754 4.393062 CACCATAACAGTTTGCTCTACTGG 59.607 45.833 14.77 0.00 45.67 4.00
6096 9756 4.997395 CACACCATAACAGTTTGCTCTACT 59.003 41.667 0.00 0.00 0.00 2.57
6097 9757 4.994852 TCACACCATAACAGTTTGCTCTAC 59.005 41.667 0.00 0.00 0.00 2.59
6098 9758 5.221641 ACTCACACCATAACAGTTTGCTCTA 60.222 40.000 0.00 0.00 0.00 2.43
6194 9859 5.431731 TCCAAATTCTGATATACACCTGGGT 59.568 40.000 0.00 0.00 0.00 4.51
6214 9879 5.804944 TCAAAGGAAGCATGATTTTCCAA 57.195 34.783 19.76 5.96 44.26 3.53
6236 9901 4.773674 TGAAACTCATTCATTCATGCCCTT 59.226 37.500 0.00 0.00 43.08 3.95
6337 10002 0.543749 CGGGGAGGAAATGCTCTCTT 59.456 55.000 1.70 0.00 0.00 2.85
6338 10003 0.325671 TCGGGGAGGAAATGCTCTCT 60.326 55.000 1.70 0.00 0.00 3.10
6351 10016 2.596346 TGCGGTACTATTTATCGGGGA 58.404 47.619 0.00 0.00 0.00 4.81
6415 10081 2.475818 TGCGACACTAACACGAACATT 58.524 42.857 0.00 0.00 0.00 2.71
6445 10111 3.989817 GCTCCATTTGCACGAAAATCTTT 59.010 39.130 0.00 0.00 0.00 2.52
6448 10114 2.945278 TGCTCCATTTGCACGAAAATC 58.055 42.857 0.00 0.00 35.31 2.17
6453 10119 2.009051 CACTATGCTCCATTTGCACGA 58.991 47.619 0.00 0.00 43.59 4.35
6462 10128 0.739462 CGGCGAAACACTATGCTCCA 60.739 55.000 0.00 0.00 0.00 3.86
6487 10154 8.655901 ACCAAGTGTTATCCCAAATTTGTATTT 58.344 29.630 16.73 2.08 34.29 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.