Multiple sequence alignment - TraesCS2B01G008900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G008900 chr2B 100.000 8058 0 0 1 8058 4983390 4991447 0.000000e+00 14881.0
1 TraesCS2B01G008900 chr2B 92.179 3286 181 46 4520 7782 69346856 69343624 0.000000e+00 4575.0
2 TraesCS2B01G008900 chr2B 88.377 456 46 7 3646 4095 69347460 69347006 7.110000e-150 542.0
3 TraesCS2B01G008900 chr2B 84.323 421 61 3 3648 4063 5368278 5368698 2.710000e-109 407.0
4 TraesCS2B01G008900 chr2B 88.746 311 29 4 2076 2385 69349062 69348757 7.630000e-100 375.0
5 TraesCS2B01G008900 chr2B 86.207 348 41 1 4089 4436 5368698 5369038 3.550000e-98 370.0
6 TraesCS2B01G008900 chr2B 86.913 298 35 3 5469 5763 5442582 5442878 1.680000e-86 331.0
7 TraesCS2B01G008900 chr2B 89.712 243 24 1 3406 3648 5367976 5368217 7.850000e-80 309.0
8 TraesCS2B01G008900 chr2B 84.667 300 36 7 5675 5966 5369608 5369905 2.840000e-74 291.0
9 TraesCS2B01G008900 chr2B 86.585 246 25 8 3407 3648 69347760 69347519 1.720000e-66 265.0
10 TraesCS2B01G008900 chr2B 95.302 149 6 1 3376 3523 5369466 5369614 1.350000e-57 235.0
11 TraesCS2B01G008900 chr2B 90.446 157 15 0 4282 4438 69347009 69346853 2.950000e-49 207.0
12 TraesCS2B01G008900 chr2B 94.017 117 5 1 7819 7935 588950202 588950088 8.310000e-40 176.0
13 TraesCS2B01G008900 chr2A 95.730 3864 116 23 3646 7499 4790481 4786657 0.000000e+00 6176.0
14 TraesCS2B01G008900 chr2A 91.580 2589 140 30 303 2871 4794272 4791742 0.000000e+00 3502.0
15 TraesCS2B01G008900 chr2A 88.678 1157 82 20 4869 6005 4745682 4744555 0.000000e+00 1365.0
16 TraesCS2B01G008900 chr2A 97.009 769 21 2 2880 3648 4791305 4790539 0.000000e+00 1291.0
17 TraesCS2B01G008900 chr2A 87.161 849 71 29 6608 7447 4840822 4841641 0.000000e+00 929.0
18 TraesCS2B01G008900 chr2A 90.265 678 42 11 4472 5141 4838754 4839415 0.000000e+00 865.0
19 TraesCS2B01G008900 chr2A 91.817 611 45 2 5170 5779 4839483 4840089 0.000000e+00 846.0
20 TraesCS2B01G008900 chr2A 87.858 733 72 14 6752 7481 4744015 4743297 0.000000e+00 845.0
21 TraesCS2B01G008900 chr2A 91.068 515 46 0 3946 4460 4837975 4838489 0.000000e+00 697.0
22 TraesCS2B01G008900 chr2A 81.001 779 107 18 2877 3642 4406119 4406869 1.510000e-161 580.0
23 TraesCS2B01G008900 chr2A 87.619 315 35 4 6100 6412 4744524 4744212 5.940000e-96 363.0
24 TraesCS2B01G008900 chr2A 87.171 304 33 4 3646 3944 4406934 4407236 2.790000e-89 340.0
25 TraesCS2B01G008900 chr2A 86.120 317 32 5 2076 2385 4760592 4760281 1.680000e-86 331.0
26 TraesCS2B01G008900 chr2A 94.231 156 7 1 6452 6607 4840594 4840747 3.760000e-58 237.0
27 TraesCS2B01G008900 chr2A 88.889 162 18 0 6440 6601 4744214 4744053 4.930000e-47 200.0
28 TraesCS2B01G008900 chr2A 90.580 138 12 1 99 236 4794889 4794753 1.790000e-41 182.0
29 TraesCS2B01G008900 chr2A 77.740 292 31 19 2599 2871 4405359 4405635 1.810000e-31 148.0
30 TraesCS2B01G008900 chr2A 92.500 40 3 0 7342 7381 4786659 4786620 3.140000e-04 58.4
31 TraesCS2B01G008900 chr2D 96.908 2652 66 9 3646 6295 6428346 6425709 0.000000e+00 4429.0
32 TraesCS2B01G008900 chr2D 91.995 2611 119 31 303 2871 6432108 6429546 0.000000e+00 3581.0
33 TraesCS2B01G008900 chr2D 93.907 1477 46 14 6326 7795 6425708 6424269 0.000000e+00 2189.0
34 TraesCS2B01G008900 chr2D 84.732 2050 190 59 5262 7259 6281752 6279774 0.000000e+00 1938.0
35 TraesCS2B01G008900 chr2D 88.028 710 69 6 3735 4438 6283156 6282457 0.000000e+00 826.0
36 TraesCS2B01G008900 chr2D 98.309 414 5 1 2880 3293 6429139 6428728 0.000000e+00 725.0
37 TraesCS2B01G008900 chr2D 84.404 654 51 25 4520 5141 6282460 6281826 5.380000e-166 595.0
38 TraesCS2B01G008900 chr2D 98.165 327 6 0 3322 3648 6428730 6428404 9.070000e-159 571.0
39 TraesCS2B01G008900 chr2D 88.222 450 53 0 5461 5910 5917351 5917800 9.200000e-149 538.0
40 TraesCS2B01G008900 chr2D 88.197 305 27 6 2085 2385 6283856 6283557 9.950000e-94 355.0
41 TraesCS2B01G008900 chr2D 88.983 118 1 6 7941 8058 6422835 6422730 1.410000e-27 135.0
42 TraesCS2B01G008900 chr2D 91.463 82 4 2 7348 7427 6279731 6279651 8.550000e-20 110.0
43 TraesCS2B01G008900 chr2D 84.946 93 12 2 507 599 6432971 6432881 8.610000e-15 93.5
44 TraesCS2B01G008900 chr2D 96.078 51 2 0 243 293 128455550 128455500 5.180000e-12 84.2
45 TraesCS2B01G008900 chr2D 89.231 65 6 1 393 457 6433103 6433040 6.700000e-11 80.5
46 TraesCS2B01G008900 chr4A 95.696 1185 43 4 5238 6422 693410890 693409714 0.000000e+00 1899.0
47 TraesCS2B01G008900 chr4A 96.601 1059 30 5 6420 7476 693399357 693398303 0.000000e+00 1751.0
48 TraesCS2B01G008900 chr4A 96.154 52 1 1 245 296 330086817 330086767 5.180000e-12 84.2
49 TraesCS2B01G008900 chr4B 84.368 467 53 13 4634 5092 580320506 580320052 2.670000e-119 440.0
50 TraesCS2B01G008900 chr4B 83.976 337 50 2 3836 4170 580321149 580320815 3.630000e-83 320.0
51 TraesCS2B01G008900 chr4B 85.714 308 31 7 2079 2385 580322252 580321957 6.070000e-81 313.0
52 TraesCS2B01G008900 chr4B 91.765 85 7 0 2605 2689 580321601 580321517 1.420000e-22 119.0
53 TraesCS2B01G008900 chr6B 94.068 118 5 1 7819 7936 267021893 267021778 2.310000e-40 178.0
54 TraesCS2B01G008900 chr5B 94.068 118 5 1 7819 7936 79817995 79817880 2.310000e-40 178.0
55 TraesCS2B01G008900 chr5B 93.388 121 6 2 7824 7943 522656743 522656862 2.310000e-40 178.0
56 TraesCS2B01G008900 chr5B 90.977 133 8 3 7804 7936 454655330 454655458 8.310000e-40 176.0
57 TraesCS2B01G008900 chr5B 94.690 113 4 1 7824 7936 70795769 70795659 2.990000e-39 174.0
58 TraesCS2B01G008900 chr5B 97.959 49 1 0 246 294 348582431 348582383 1.440000e-12 86.1
59 TraesCS2B01G008900 chr5D 92.683 123 6 2 7821 7942 420228166 420228286 2.990000e-39 174.0
60 TraesCS2B01G008900 chr5D 97.959 49 1 0 245 293 420277179 420277227 1.440000e-12 86.1
61 TraesCS2B01G008900 chr5D 88.889 63 5 2 233 294 164605981 164606042 8.670000e-10 76.8
62 TraesCS2B01G008900 chr4D 94.690 113 4 1 7824 7936 234179256 234179146 2.990000e-39 174.0
63 TraesCS2B01G008900 chr3D 94.690 113 4 1 7824 7936 346837559 346837449 2.990000e-39 174.0
64 TraesCS2B01G008900 chr3D 97.959 49 1 0 245 293 157099403 157099355 1.440000e-12 86.1
65 TraesCS2B01G008900 chr6A 96.296 54 1 1 245 297 311856948 311857001 4.010000e-13 87.9
66 TraesCS2B01G008900 chr5A 97.959 49 1 0 245 293 533944237 533944285 1.440000e-12 86.1
67 TraesCS2B01G008900 chr5A 91.667 60 3 2 234 292 302553351 302553409 1.860000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G008900 chr2B 4983390 4991447 8057 False 14881.00 14881 100.000000 1 8058 1 chr2B.!!$F1 8057
1 TraesCS2B01G008900 chr2B 69343624 69349062 5438 True 1192.80 4575 89.266600 2076 7782 5 chr2B.!!$R2 5706
2 TraesCS2B01G008900 chr2B 5367976 5369905 1929 False 322.40 407 88.042200 3376 5966 5 chr2B.!!$F3 2590
3 TraesCS2B01G008900 chr2A 4786620 4794889 8269 True 2241.88 6176 93.479800 99 7499 5 chr2A.!!$R3 7400
4 TraesCS2B01G008900 chr2A 4837975 4841641 3666 False 714.80 929 90.908400 3946 7447 5 chr2A.!!$F2 3501
5 TraesCS2B01G008900 chr2A 4743297 4745682 2385 True 693.25 1365 88.261000 4869 7481 4 chr2A.!!$R2 2612
6 TraesCS2B01G008900 chr2A 4405359 4407236 1877 False 356.00 580 81.970667 2599 3944 3 chr2A.!!$F1 1345
7 TraesCS2B01G008900 chr2D 6422730 6433103 10373 True 1475.50 4429 92.805500 303 8058 8 chr2D.!!$R3 7755
8 TraesCS2B01G008900 chr2D 6279651 6283856 4205 True 764.80 1938 87.364800 2085 7427 5 chr2D.!!$R2 5342
9 TraesCS2B01G008900 chr4A 693409714 693410890 1176 True 1899.00 1899 95.696000 5238 6422 1 chr4A.!!$R3 1184
10 TraesCS2B01G008900 chr4A 693398303 693399357 1054 True 1751.00 1751 96.601000 6420 7476 1 chr4A.!!$R2 1056
11 TraesCS2B01G008900 chr4B 580320052 580322252 2200 True 298.00 440 86.455750 2079 5092 4 chr4B.!!$R1 3013

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
432 1583 0.554792 CCCTCTTTCCCATGGCATCT 59.445 55.000 6.09 0.00 0.00 2.90 F
863 2027 1.002403 TGCCCGTGGAATCTCCCTA 59.998 57.895 0.00 0.00 35.03 3.53 F
1738 2962 0.892755 ACAGCCAATGCAGAACATGG 59.107 50.000 0.00 0.00 39.60 3.66 F
2386 3620 0.256464 TGCCAGCCATCACATCATCA 59.744 50.000 0.00 0.00 0.00 3.07 F
3569 5515 2.164422 TGTCTCAGTATCTGCAGTTCGG 59.836 50.000 14.67 6.49 0.00 4.30 F
4896 7309 3.373439 CAGCTGTTGACTCTGATAAAGCC 59.627 47.826 5.25 0.00 0.00 4.35 F
5444 7989 2.239654 AGATCGATGCTTTCCCCTTCAA 59.760 45.455 0.54 0.00 0.00 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1596 2820 0.981183 TCGGTGGAGGCATAGTGTTT 59.019 50.000 0.00 0.0 0.00 2.83 R
1749 2973 1.152673 GGAGGAATGTGGCCCCATC 60.153 63.158 0.00 0.0 0.00 3.51 R
3569 5515 2.052690 TACCTCGAGCAGCCCACTC 61.053 63.158 6.99 0.0 0.00 3.51 R
4232 6275 1.004436 TCCCCCAATTTGACCCTACC 58.996 55.000 0.00 0.0 0.00 3.18 R
5064 7568 2.676232 CCTTGAGAGAGGTGCTCCA 58.324 57.895 7.70 0.0 45.10 3.86 R
6408 9013 2.742589 GTCTAGGCACTGCAAGGTTAAC 59.257 50.000 2.82 0.0 41.52 2.01 R
7427 10159 3.376234 CAGCCAGATCAATACCAACAGTG 59.624 47.826 0.00 0.0 0.00 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.239217 TGATGAGTTTGCTCTATATGTGGT 57.761 37.500 0.00 0.00 42.13 4.16
24 25 6.051074 TGATGAGTTTGCTCTATATGTGGTG 58.949 40.000 0.00 0.00 42.13 4.17
25 26 5.675684 TGAGTTTGCTCTATATGTGGTGA 57.324 39.130 0.00 0.00 42.13 4.02
26 27 5.664457 TGAGTTTGCTCTATATGTGGTGAG 58.336 41.667 0.00 0.00 42.13 3.51
31 32 4.599047 GCTCTATATGTGGTGAGCTCTT 57.401 45.455 16.19 0.00 45.78 2.85
32 33 4.954875 GCTCTATATGTGGTGAGCTCTTT 58.045 43.478 16.19 0.00 45.78 2.52
33 34 4.987912 GCTCTATATGTGGTGAGCTCTTTC 59.012 45.833 16.19 5.49 45.78 2.62
34 35 5.452496 GCTCTATATGTGGTGAGCTCTTTCA 60.452 44.000 16.19 7.65 45.78 2.69
35 36 6.737720 TCTATATGTGGTGAGCTCTTTCAT 57.262 37.500 16.19 15.18 0.00 2.57
37 38 3.996921 ATGTGGTGAGCTCTTTCATCT 57.003 42.857 16.19 0.22 0.00 2.90
40 41 5.227569 TGTGGTGAGCTCTTTCATCTTTA 57.772 39.130 16.19 0.00 0.00 1.85
42 43 6.946340 TGTGGTGAGCTCTTTCATCTTTATA 58.054 36.000 16.19 0.00 0.00 0.98
43 44 7.568349 TGTGGTGAGCTCTTTCATCTTTATAT 58.432 34.615 16.19 0.00 0.00 0.86
44 45 7.712639 TGTGGTGAGCTCTTTCATCTTTATATC 59.287 37.037 16.19 0.00 0.00 1.63
45 46 7.930865 GTGGTGAGCTCTTTCATCTTTATATCT 59.069 37.037 16.19 0.00 0.00 1.98
46 47 8.147058 TGGTGAGCTCTTTCATCTTTATATCTC 58.853 37.037 16.19 0.00 0.00 2.75
47 48 7.328249 GGTGAGCTCTTTCATCTTTATATCTCG 59.672 40.741 16.19 0.00 0.00 4.04
49 50 6.696411 AGCTCTTTCATCTTTATATCTCGGG 58.304 40.000 0.00 0.00 0.00 5.14
50 51 5.872070 GCTCTTTCATCTTTATATCTCGGGG 59.128 44.000 0.00 0.00 0.00 5.73
51 52 6.360370 TCTTTCATCTTTATATCTCGGGGG 57.640 41.667 0.00 0.00 0.00 5.40
72 73 4.349930 GGGGTAGTTTAATCCCTCTATGCA 59.650 45.833 0.00 0.00 40.88 3.96
73 74 5.306394 GGGTAGTTTAATCCCTCTATGCAC 58.694 45.833 0.00 0.00 38.29 4.57
74 75 5.071923 GGGTAGTTTAATCCCTCTATGCACT 59.928 44.000 0.00 0.00 38.29 4.40
75 76 6.409349 GGGTAGTTTAATCCCTCTATGCACTT 60.409 42.308 0.00 0.00 38.29 3.16
77 78 7.226918 GGTAGTTTAATCCCTCTATGCACTTTC 59.773 40.741 0.00 0.00 0.00 2.62
80 81 7.669722 AGTTTAATCCCTCTATGCACTTTCAAA 59.330 33.333 0.00 0.00 0.00 2.69
82 83 6.705863 AATCCCTCTATGCACTTTCAAATC 57.294 37.500 0.00 0.00 0.00 2.17
83 84 5.441718 TCCCTCTATGCACTTTCAAATCT 57.558 39.130 0.00 0.00 0.00 2.40
84 85 6.560003 TCCCTCTATGCACTTTCAAATCTA 57.440 37.500 0.00 0.00 0.00 1.98
88 89 8.689972 CCCTCTATGCACTTTCAAATCTATTTT 58.310 33.333 0.00 0.00 0.00 1.82
115 116 7.685481 TCTTAGGGATGTACTTTCAACATTGA 58.315 34.615 0.00 0.00 37.69 2.57
140 141 7.962964 TTTCTATAGGGATGCACTTTTATCG 57.037 36.000 0.00 0.00 0.00 2.92
158 159 1.017387 CGTTGCTAATGAGAAGGGGC 58.983 55.000 0.00 0.00 0.00 5.80
168 169 6.016693 GCTAATGAGAAGGGGCTTTAATTCTC 60.017 42.308 6.81 6.81 45.07 2.87
169 170 4.236527 TGAGAAGGGGCTTTAATTCTCC 57.763 45.455 10.37 0.00 44.52 3.71
171 172 4.044065 TGAGAAGGGGCTTTAATTCTCCAA 59.956 41.667 10.37 0.00 44.52 3.53
172 173 5.010708 AGAAGGGGCTTTAATTCTCCAAA 57.989 39.130 0.00 0.00 0.00 3.28
173 174 5.402630 AGAAGGGGCTTTAATTCTCCAAAA 58.597 37.500 0.00 0.00 0.00 2.44
175 176 5.745312 AGGGGCTTTAATTCTCCAAAAAG 57.255 39.130 0.00 0.00 33.15 2.27
181 182 5.787380 CTTTAATTCTCCAAAAAGCCTGCT 58.213 37.500 0.00 0.00 0.00 4.24
182 183 5.806654 TTAATTCTCCAAAAAGCCTGCTT 57.193 34.783 0.00 0.00 37.98 3.91
184 185 7.480760 TTAATTCTCCAAAAAGCCTGCTTAT 57.519 32.000 4.57 0.00 34.84 1.73
185 186 8.588290 TTAATTCTCCAAAAAGCCTGCTTATA 57.412 30.769 4.57 0.00 34.84 0.98
186 187 5.897377 TTCTCCAAAAAGCCTGCTTATAC 57.103 39.130 4.57 0.00 34.84 1.47
188 189 6.308015 TCTCCAAAAAGCCTGCTTATACTA 57.692 37.500 4.57 0.00 34.84 1.82
189 190 6.349300 TCTCCAAAAAGCCTGCTTATACTAG 58.651 40.000 4.57 1.69 34.84 2.57
191 192 6.481643 TCCAAAAAGCCTGCTTATACTAGTT 58.518 36.000 0.00 0.00 34.84 2.24
192 193 7.626390 TCCAAAAAGCCTGCTTATACTAGTTA 58.374 34.615 0.00 0.00 34.84 2.24
193 194 8.104566 TCCAAAAAGCCTGCTTATACTAGTTAA 58.895 33.333 0.00 0.00 34.84 2.01
194 195 8.903820 CCAAAAAGCCTGCTTATACTAGTTAAT 58.096 33.333 0.00 0.00 34.84 1.40
221 222 8.919777 AGCTATATAAACCAACCAAATAGTCC 57.080 34.615 0.00 0.00 0.00 3.85
229 230 6.697641 ACCAACCAAATAGTCCTTTAGAGA 57.302 37.500 0.00 0.00 0.00 3.10
230 231 7.086685 ACCAACCAAATAGTCCTTTAGAGAA 57.913 36.000 0.00 0.00 0.00 2.87
231 232 7.168905 ACCAACCAAATAGTCCTTTAGAGAAG 58.831 38.462 0.00 0.00 0.00 2.85
232 233 7.017254 ACCAACCAAATAGTCCTTTAGAGAAGA 59.983 37.037 0.00 0.00 0.00 2.87
234 235 7.800300 ACCAAATAGTCCTTTAGAGAAGACT 57.200 36.000 0.00 0.00 42.13 3.24
235 236 7.616313 ACCAAATAGTCCTTTAGAGAAGACTG 58.384 38.462 1.90 0.00 39.80 3.51
237 238 8.750298 CCAAATAGTCCTTTAGAGAAGACTGTA 58.250 37.037 1.90 0.00 39.80 2.74
244 245 9.849166 GTCCTTTAGAGAAGACTGTATATATGC 57.151 37.037 0.00 0.00 0.00 3.14
245 246 9.588096 TCCTTTAGAGAAGACTGTATATATGCA 57.412 33.333 3.35 3.35 0.00 3.96
251 252 9.539825 AGAGAAGACTGTATATATGCAAAGTTG 57.460 33.333 4.98 0.00 0.00 3.16
252 253 9.319143 GAGAAGACTGTATATATGCAAAGTTGT 57.681 33.333 4.98 0.00 0.00 3.32
265 266 4.752604 TGCAAAGTTGTACTAAATCAGCGA 59.247 37.500 0.00 0.00 0.00 4.93
267 268 5.333798 GCAAAGTTGTACTAAATCAGCGACA 60.334 40.000 0.00 0.00 0.00 4.35
268 269 5.840940 AAGTTGTACTAAATCAGCGACAC 57.159 39.130 0.00 0.00 0.00 3.67
269 270 5.135508 AGTTGTACTAAATCAGCGACACT 57.864 39.130 0.00 0.00 0.00 3.55
271 272 6.684686 AGTTGTACTAAATCAGCGACACTTA 58.315 36.000 0.00 0.00 0.00 2.24
272 273 7.321153 AGTTGTACTAAATCAGCGACACTTAT 58.679 34.615 0.00 0.00 0.00 1.73
273 274 7.817962 AGTTGTACTAAATCAGCGACACTTATT 59.182 33.333 0.00 0.00 0.00 1.40
274 275 8.440833 GTTGTACTAAATCAGCGACACTTATTT 58.559 33.333 0.00 0.00 36.43 1.40
275 276 8.542497 TGTACTAAATCAGCGACACTTATTTT 57.458 30.769 0.00 0.00 34.69 1.82
276 277 8.440059 TGTACTAAATCAGCGACACTTATTTTG 58.560 33.333 0.00 0.00 34.69 2.44
278 279 4.701956 AATCAGCGACACTTATTTTGGG 57.298 40.909 0.00 0.00 0.00 4.12
279 280 3.410631 TCAGCGACACTTATTTTGGGA 57.589 42.857 0.00 0.00 0.00 4.37
280 281 3.071479 TCAGCGACACTTATTTTGGGAC 58.929 45.455 0.00 0.00 0.00 4.46
281 282 2.073816 AGCGACACTTATTTTGGGACG 58.926 47.619 0.00 0.00 0.00 4.79
282 283 1.129811 GCGACACTTATTTTGGGACGG 59.870 52.381 0.00 0.00 0.00 4.79
283 284 2.690786 CGACACTTATTTTGGGACGGA 58.309 47.619 0.00 0.00 0.00 4.69
284 285 2.671396 CGACACTTATTTTGGGACGGAG 59.329 50.000 0.00 0.00 0.00 4.63
285 286 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
286 287 2.640826 ACACTTATTTTGGGACGGAGGA 59.359 45.455 0.00 0.00 0.00 3.71
287 288 3.073356 ACACTTATTTTGGGACGGAGGAA 59.927 43.478 0.00 0.00 0.00 3.36
289 290 3.329814 ACTTATTTTGGGACGGAGGAAGT 59.670 43.478 0.00 0.00 0.00 3.01
292 293 6.384886 ACTTATTTTGGGACGGAGGAAGTATA 59.615 38.462 0.00 0.00 0.00 1.47
294 295 8.495160 TTATTTTGGGACGGAGGAAGTATATA 57.505 34.615 0.00 0.00 0.00 0.86
295 296 7.569599 ATTTTGGGACGGAGGAAGTATATAT 57.430 36.000 0.00 0.00 0.00 0.86
296 297 8.674925 ATTTTGGGACGGAGGAAGTATATATA 57.325 34.615 0.00 0.00 0.00 0.86
297 298 7.472334 TTTGGGACGGAGGAAGTATATATAC 57.528 40.000 14.05 14.05 0.00 1.47
298 299 5.513233 TGGGACGGAGGAAGTATATATACC 58.487 45.833 17.52 4.76 33.79 2.73
299 300 5.015497 TGGGACGGAGGAAGTATATATACCA 59.985 44.000 17.52 3.33 33.79 3.25
301 302 6.127507 GGGACGGAGGAAGTATATATACCAAC 60.128 46.154 17.52 9.07 33.79 3.77
302 303 6.127507 GGACGGAGGAAGTATATATACCAACC 60.128 46.154 17.52 16.81 33.79 3.77
303 304 6.317312 ACGGAGGAAGTATATATACCAACCA 58.683 40.000 17.52 0.00 33.79 3.67
306 307 7.104290 GGAGGAAGTATATATACCAACCAAGC 58.896 42.308 17.52 11.64 33.79 4.01
311 1454 7.005709 AGTATATATACCAACCAAGCACTCC 57.994 40.000 17.52 0.00 33.79 3.85
314 1457 1.145571 TACCAACCAAGCACTCCCTT 58.854 50.000 0.00 0.00 0.00 3.95
329 1472 5.678955 ACTCCCTTAGTGTTCCATCTAAC 57.321 43.478 0.00 0.00 36.93 2.34
330 1473 4.470304 ACTCCCTTAGTGTTCCATCTAACC 59.530 45.833 0.00 0.00 36.93 2.85
367 1511 5.163519 GCATGAAGCCTTATTACCATGTGTT 60.164 40.000 0.00 0.00 37.23 3.32
368 1512 5.895636 TGAAGCCTTATTACCATGTGTTG 57.104 39.130 0.00 0.00 0.00 3.33
370 1514 6.186957 TGAAGCCTTATTACCATGTGTTGAT 58.813 36.000 0.00 0.00 0.00 2.57
382 1533 4.081476 CCATGTGTTGATCAGGTGAGTCTA 60.081 45.833 0.00 0.00 0.00 2.59
391 1542 2.490903 TCAGGTGAGTCTAGTTTACGGC 59.509 50.000 0.00 0.00 0.00 5.68
400 1551 1.955080 CTAGTTTACGGCCTCCTCGAT 59.045 52.381 0.00 0.00 0.00 3.59
432 1583 0.554792 CCCTCTTTCCCATGGCATCT 59.445 55.000 6.09 0.00 0.00 2.90
459 1610 1.277273 GACCAACGTAACCCTAAGCCT 59.723 52.381 0.00 0.00 0.00 4.58
460 1611 2.497273 GACCAACGTAACCCTAAGCCTA 59.503 50.000 0.00 0.00 0.00 3.93
461 1612 2.905736 ACCAACGTAACCCTAAGCCTAA 59.094 45.455 0.00 0.00 0.00 2.69
462 1613 3.055602 ACCAACGTAACCCTAAGCCTAAG 60.056 47.826 0.00 0.00 0.00 2.18
463 1614 3.196254 CCAACGTAACCCTAAGCCTAAGA 59.804 47.826 0.00 0.00 0.00 2.10
464 1615 4.430908 CAACGTAACCCTAAGCCTAAGAG 58.569 47.826 0.00 0.00 0.00 2.85
465 1616 2.429971 ACGTAACCCTAAGCCTAAGAGC 59.570 50.000 0.00 0.00 0.00 4.09
466 1617 2.543238 CGTAACCCTAAGCCTAAGAGCG 60.543 54.545 0.00 0.00 38.01 5.03
467 1618 1.861982 AACCCTAAGCCTAAGAGCGA 58.138 50.000 0.00 0.00 38.01 4.93
468 1619 1.112950 ACCCTAAGCCTAAGAGCGAC 58.887 55.000 0.00 0.00 38.01 5.19
469 1620 1.342175 ACCCTAAGCCTAAGAGCGACT 60.342 52.381 0.00 0.00 38.01 4.18
476 1627 4.635833 AGCCTAAGAGCGACTACTTTAC 57.364 45.455 0.00 0.00 38.01 2.01
477 1628 3.380954 AGCCTAAGAGCGACTACTTTACC 59.619 47.826 0.00 0.00 38.01 2.85
490 1642 1.004679 TTTACCTTCCCCACGACGC 60.005 57.895 0.00 0.00 0.00 5.19
502 1654 1.249598 CACGACGCATACGAAACGTA 58.750 50.000 6.48 6.48 46.28 3.57
503 1655 1.009148 CACGACGCATACGAAACGTAC 60.009 52.381 6.17 0.00 45.07 3.67
504 1656 1.249598 CGACGCATACGAAACGTACA 58.750 50.000 6.17 0.00 45.07 2.90
505 1657 1.643326 CGACGCATACGAAACGTACAA 59.357 47.619 6.17 0.00 45.07 2.41
518 1670 3.169355 ACGTACAAACAAACGACTCCT 57.831 42.857 1.45 0.00 41.55 3.69
530 1682 1.270094 ACGACTCCTTTGAACATCGCA 60.270 47.619 0.00 0.00 32.95 5.10
533 1685 3.265791 GACTCCTTTGAACATCGCAGAT 58.734 45.455 0.00 0.00 45.12 2.90
548 1701 1.479389 GCAGATCCCCCTAACATTGGG 60.479 57.143 0.00 0.00 44.19 4.12
552 1705 1.295020 TCCCCCTAACATTGGGTCTG 58.705 55.000 0.00 0.00 43.09 3.51
554 1707 1.852965 CCCCCTAACATTGGGTCTGAT 59.147 52.381 0.00 0.00 43.09 2.90
576 1729 2.435805 GGACCATGATCCTGCTAGACAA 59.564 50.000 0.00 0.00 35.68 3.18
583 1736 5.619132 TGATCCTGCTAGACAATTCATCA 57.381 39.130 0.00 0.00 0.00 3.07
587 1740 5.559770 TCCTGCTAGACAATTCATCACAAA 58.440 37.500 0.00 0.00 0.00 2.83
588 1741 6.003326 TCCTGCTAGACAATTCATCACAAAA 58.997 36.000 0.00 0.00 0.00 2.44
589 1742 6.072508 TCCTGCTAGACAATTCATCACAAAAC 60.073 38.462 0.00 0.00 0.00 2.43
590 1743 6.072286 CCTGCTAGACAATTCATCACAAAACT 60.072 38.462 0.00 0.00 0.00 2.66
591 1744 6.671190 TGCTAGACAATTCATCACAAAACTG 58.329 36.000 0.00 0.00 0.00 3.16
594 1747 7.862372 GCTAGACAATTCATCACAAAACTGAAA 59.138 33.333 0.00 0.00 33.03 2.69
595 1748 9.734620 CTAGACAATTCATCACAAAACTGAAAA 57.265 29.630 0.00 0.00 33.03 2.29
596 1749 8.411318 AGACAATTCATCACAAAACTGAAAAC 57.589 30.769 0.00 0.00 33.03 2.43
599 1752 8.872845 ACAATTCATCACAAAACTGAAAACTTC 58.127 29.630 0.00 0.00 33.03 3.01
600 1753 9.090692 CAATTCATCACAAAACTGAAAACTTCT 57.909 29.630 0.00 0.00 33.03 2.85
630 1783 2.465860 TGGACGAATTCGGTTGACAT 57.534 45.000 29.79 8.67 44.95 3.06
633 1786 2.222729 GGACGAATTCGGTTGACATTCG 60.223 50.000 29.79 11.02 43.17 3.34
638 1794 4.377022 CGAATTCGGTTGACATTCGAAACT 60.377 41.667 20.16 7.50 44.30 2.66
652 1808 2.546368 TCGAAACTGAATTTGACACGGG 59.454 45.455 0.00 0.00 0.00 5.28
653 1809 2.546368 CGAAACTGAATTTGACACGGGA 59.454 45.455 0.00 0.00 0.00 5.14
654 1810 3.363970 CGAAACTGAATTTGACACGGGAG 60.364 47.826 0.00 0.00 0.00 4.30
655 1811 3.485463 AACTGAATTTGACACGGGAGA 57.515 42.857 0.00 0.00 0.00 3.71
656 1812 3.045601 ACTGAATTTGACACGGGAGAG 57.954 47.619 0.00 0.00 0.00 3.20
657 1813 2.632996 ACTGAATTTGACACGGGAGAGA 59.367 45.455 0.00 0.00 0.00 3.10
658 1814 3.071023 ACTGAATTTGACACGGGAGAGAA 59.929 43.478 0.00 0.00 0.00 2.87
659 1815 3.664107 TGAATTTGACACGGGAGAGAAG 58.336 45.455 0.00 0.00 0.00 2.85
660 1816 3.323691 TGAATTTGACACGGGAGAGAAGA 59.676 43.478 0.00 0.00 0.00 2.87
661 1817 2.814280 TTTGACACGGGAGAGAAGAC 57.186 50.000 0.00 0.00 0.00 3.01
662 1818 1.699730 TTGACACGGGAGAGAAGACA 58.300 50.000 0.00 0.00 0.00 3.41
747 1908 4.394712 CCTCCGCACCCACCTGTC 62.395 72.222 0.00 0.00 0.00 3.51
791 1952 1.875422 ATCTCCACCTCCCCGTCTCA 61.875 60.000 0.00 0.00 0.00 3.27
804 1965 2.095853 CCCGTCTCACAAATTCCAATCG 59.904 50.000 0.00 0.00 0.00 3.34
811 1972 3.409959 AAATTCCAATCGCGCCGCC 62.410 57.895 2.28 0.00 0.00 6.13
860 2024 2.511600 CGTGCCCGTGGAATCTCC 60.512 66.667 0.00 0.00 36.96 3.71
862 2026 2.285368 TGCCCGTGGAATCTCCCT 60.285 61.111 0.00 0.00 35.03 4.20
863 2027 1.002403 TGCCCGTGGAATCTCCCTA 59.998 57.895 0.00 0.00 35.03 3.53
877 2041 2.421739 CCTACTGAATCCGGCCCG 59.578 66.667 0.00 0.00 0.00 6.13
880 2044 1.380785 TACTGAATCCGGCCCGTCT 60.381 57.895 0.85 0.00 0.00 4.18
926 2090 2.307611 GATCCGACCGAGAAACCCCC 62.308 65.000 0.00 0.00 0.00 5.40
1216 2380 2.685380 CTGCTTCTCCTCGGGGGT 60.685 66.667 0.00 0.00 36.25 4.95
1318 2482 4.020617 CTCCAGGGCCGTTCAGCA 62.021 66.667 0.00 0.00 0.00 4.41
1437 2661 2.863988 CCACCCCAGGGACCCTTT 60.864 66.667 11.56 0.00 38.96 3.11
1467 2691 1.388217 TCCAACCCAGGGACCCTTT 60.388 57.895 14.54 0.00 0.00 3.11
1468 2692 1.228862 CCAACCCAGGGACCCTTTG 60.229 63.158 14.54 13.34 0.00 2.77
1469 2693 1.228862 CAACCCAGGGACCCTTTGG 60.229 63.158 20.29 20.29 37.80 3.28
1596 2820 2.217038 GCCACAGTCTCCCACAGGA 61.217 63.158 0.00 0.00 41.08 3.86
1617 2841 0.902984 ACACTATGCCTCCACCGACA 60.903 55.000 0.00 0.00 0.00 4.35
1738 2962 0.892755 ACAGCCAATGCAGAACATGG 59.107 50.000 0.00 0.00 39.60 3.66
1869 3093 2.743928 GTGAGTTCTGCGCCTGGG 60.744 66.667 4.18 0.00 0.00 4.45
1887 3111 1.961277 GTCGCTTGACCCAGGTGTG 60.961 63.158 0.00 0.00 36.58 3.82
2001 3225 1.739067 GGCTGACAACCCACACTATC 58.261 55.000 0.00 0.00 0.00 2.08
2116 3340 8.671921 ACTCTGCTTTATCATTTTCTGTATGTG 58.328 33.333 0.00 0.00 0.00 3.21
2385 3619 0.952280 CTGCCAGCCATCACATCATC 59.048 55.000 0.00 0.00 0.00 2.92
2386 3620 0.256464 TGCCAGCCATCACATCATCA 59.744 50.000 0.00 0.00 0.00 3.07
2744 4127 3.931907 AGAATATGCTTAGTGCCACCA 57.068 42.857 0.00 0.00 42.00 4.17
2747 4130 5.940617 AGAATATGCTTAGTGCCACCATTA 58.059 37.500 0.00 0.00 42.00 1.90
2878 4780 8.802267 ACATGTTGCTATACAATTAAGTTTGGT 58.198 29.630 0.00 0.00 41.27 3.67
2991 4893 7.959175 AGCTATGTTACTTATTCGGTGGAATA 58.041 34.615 0.00 0.00 42.71 1.75
3310 5213 4.387598 AGGCTGTCATTTATGAGATCTGC 58.612 43.478 0.00 0.00 37.51 4.26
3569 5515 2.164422 TGTCTCAGTATCTGCAGTTCGG 59.836 50.000 14.67 6.49 0.00 4.30
4181 6222 4.330620 TGAAGTACACGTTGGTTGTTCTTC 59.669 41.667 12.54 12.54 39.09 2.87
4232 6275 6.356556 TCTGGACAATTATGTAATCCCTGTG 58.643 40.000 0.00 0.00 40.74 3.66
4365 6408 3.766591 AGGAGCATATTCTGAGGATACCG 59.233 47.826 0.00 0.00 37.17 4.02
4725 7112 9.267084 GGAAAAGGTTTTAGATTTTATGCACAA 57.733 29.630 0.00 0.00 0.00 3.33
4896 7309 3.373439 CAGCTGTTGACTCTGATAAAGCC 59.627 47.826 5.25 0.00 0.00 4.35
5411 7955 2.833794 TGTGTCAGTGTTGGCTAGAAC 58.166 47.619 0.00 0.00 0.00 3.01
5434 7978 4.215827 CCGGTTAGTACTAGATCGATGCTT 59.784 45.833 0.54 0.00 0.00 3.91
5444 7989 2.239654 AGATCGATGCTTTCCCCTTCAA 59.760 45.455 0.54 0.00 0.00 2.69
5453 7998 4.202243 TGCTTTCCCCTTCAAAAATGTCAG 60.202 41.667 0.00 0.00 0.00 3.51
5859 8436 6.978659 CGTATTTCCTTGCTACTGAACTGATA 59.021 38.462 0.00 0.00 0.00 2.15
5860 8437 7.653713 CGTATTTCCTTGCTACTGAACTGATAT 59.346 37.037 0.00 0.00 0.00 1.63
5966 8557 6.650807 TGTTTCTGTGATGGAATGAACTAGTC 59.349 38.462 0.00 0.00 0.00 2.59
6139 8739 7.329226 CACATTTGTAGTTAAAATGGGCAGAAG 59.671 37.037 12.14 0.00 45.29 2.85
6184 8786 4.175787 AGTCTGCTTAGTTAGTTCGGTG 57.824 45.455 0.00 0.00 0.00 4.94
6186 8788 3.919197 GTCTGCTTAGTTAGTTCGGTGTC 59.081 47.826 0.00 0.00 0.00 3.67
6194 8796 3.323979 AGTTAGTTCGGTGTCACCTCAAT 59.676 43.478 19.82 7.83 35.66 2.57
6332 8937 9.136952 ACATTTCGTTTAATCTAGTCTACACAC 57.863 33.333 0.00 0.00 0.00 3.82
7068 9768 0.249073 AGCTCGTGATGATGTACGGC 60.249 55.000 0.00 0.00 40.48 5.68
7209 9924 0.393402 CCATCCTGTTAGCAGCAGCA 60.393 55.000 3.17 0.00 45.49 4.41
7210 9925 1.015109 CATCCTGTTAGCAGCAGCAG 58.985 55.000 3.17 0.00 45.49 4.24
7211 9926 0.747283 ATCCTGTTAGCAGCAGCAGC 60.747 55.000 3.17 0.46 45.49 5.25
7212 9927 1.673337 CCTGTTAGCAGCAGCAGCA 60.673 57.895 12.92 0.00 45.49 4.41
7293 10012 5.834239 TTTTCGTGACGAGAAAAGGATAC 57.166 39.130 8.56 0.00 41.10 2.24
7294 10013 4.508461 TTCGTGACGAGAAAAGGATACA 57.492 40.909 8.02 0.00 37.14 2.29
7427 10159 7.487829 TGCAAAGATTGTGTAAACTCTTGTTTC 59.512 33.333 0.00 0.00 44.35 2.78
7447 10180 3.609853 TCACTGTTGGTATTGATCTGGC 58.390 45.455 0.00 0.00 0.00 4.85
7506 10239 6.249911 ACTGATCTGGATTCAAGATGTCAT 57.750 37.500 8.34 0.00 0.00 3.06
7552 10289 9.955208 AAGTACAAAATGCATACATGATACATG 57.045 29.630 0.00 9.72 36.36 3.21
7553 10290 8.077991 AGTACAAAATGCATACATGATACATGC 58.922 33.333 0.00 9.29 44.23 4.06
7599 10336 7.824289 TGAAATCTAGGTTAACATGAAGTCAGG 59.176 37.037 8.10 0.00 0.00 3.86
7605 10342 9.667107 CTAGGTTAACATGAAGTCAGGATTTTA 57.333 33.333 8.10 0.00 0.00 1.52
7639 10376 1.021202 TTTTGTGCCGAGACCAGTTG 58.979 50.000 0.00 0.00 0.00 3.16
7706 10443 5.042463 TCAAGATGTAACTTTGACCACCA 57.958 39.130 0.00 0.00 0.00 4.17
7799 11218 5.211266 TCGGTGAAACAAATAGTAATGCG 57.789 39.130 0.00 0.00 39.98 4.73
7812 11231 1.135199 GTAATGCGACGAACTGGGAGA 60.135 52.381 0.00 0.00 0.00 3.71
7814 11233 1.251527 ATGCGACGAACTGGGAGACT 61.252 55.000 0.00 0.00 0.00 3.24
7815 11234 0.607217 TGCGACGAACTGGGAGACTA 60.607 55.000 0.00 0.00 0.00 2.59
7816 11235 0.099082 GCGACGAACTGGGAGACTAG 59.901 60.000 0.00 0.00 45.91 2.57
7817 11236 0.099082 CGACGAACTGGGAGACTAGC 59.901 60.000 0.00 0.00 43.94 3.42
7818 11237 1.465794 GACGAACTGGGAGACTAGCT 58.534 55.000 0.00 0.00 43.94 3.32
7821 11240 1.546476 CGAACTGGGAGACTAGCTTGT 59.454 52.381 0.00 0.00 43.94 3.16
7822 11241 2.672478 CGAACTGGGAGACTAGCTTGTG 60.672 54.545 5.27 0.00 43.94 3.33
7833 11252 2.435059 GCTTGTGCTCCCTCCGTC 60.435 66.667 0.00 0.00 36.03 4.79
7834 11253 2.948720 GCTTGTGCTCCCTCCGTCT 61.949 63.158 0.00 0.00 36.03 4.18
7836 11255 2.513026 CTTGTGCTCCCTCCGTCTGG 62.513 65.000 0.00 0.00 0.00 3.86
7837 11256 2.680352 GTGCTCCCTCCGTCTGGA 60.680 66.667 0.00 0.00 43.88 3.86
7838 11257 2.119611 TGCTCCCTCCGTCTGGAA 59.880 61.111 0.00 0.00 45.87 3.53
7840 11259 0.909610 TGCTCCCTCCGTCTGGAAAT 60.910 55.000 0.00 0.00 45.87 2.17
7841 11260 1.120530 GCTCCCTCCGTCTGGAAATA 58.879 55.000 0.00 0.00 45.87 1.40
7842 11261 1.202545 GCTCCCTCCGTCTGGAAATAC 60.203 57.143 0.00 0.00 45.87 1.89
7843 11262 2.389715 CTCCCTCCGTCTGGAAATACT 58.610 52.381 0.00 0.00 45.87 2.12
7844 11263 2.766828 CTCCCTCCGTCTGGAAATACTT 59.233 50.000 0.00 0.00 45.87 2.24
7845 11264 2.500098 TCCCTCCGTCTGGAAATACTTG 59.500 50.000 0.00 0.00 45.87 3.16
7847 11266 3.522553 CCTCCGTCTGGAAATACTTGTC 58.477 50.000 0.00 0.00 45.87 3.18
7848 11267 3.179830 CTCCGTCTGGAAATACTTGTCG 58.820 50.000 0.00 0.00 45.87 4.35
7849 11268 2.821378 TCCGTCTGGAAATACTTGTCGA 59.179 45.455 0.00 0.00 42.85 4.20
7850 11269 3.256383 TCCGTCTGGAAATACTTGTCGAA 59.744 43.478 0.00 0.00 42.85 3.71
7852 11271 4.482386 CGTCTGGAAATACTTGTCGAAGA 58.518 43.478 0.00 0.00 32.98 2.87
7853 11272 4.921515 CGTCTGGAAATACTTGTCGAAGAA 59.078 41.667 0.00 0.00 39.69 2.52
7854 11273 5.404366 CGTCTGGAAATACTTGTCGAAGAAA 59.596 40.000 0.00 0.00 39.69 2.52
7855 11274 6.090898 CGTCTGGAAATACTTGTCGAAGAAAT 59.909 38.462 0.00 0.00 39.69 2.17
7856 11275 7.237173 GTCTGGAAATACTTGTCGAAGAAATG 58.763 38.462 0.00 0.00 39.69 2.32
7857 11276 7.117812 GTCTGGAAATACTTGTCGAAGAAATGA 59.882 37.037 0.00 0.00 39.69 2.57
7858 11277 7.659799 TCTGGAAATACTTGTCGAAGAAATGAA 59.340 33.333 0.00 0.00 39.69 2.57
7859 11278 8.335532 TGGAAATACTTGTCGAAGAAATGAAT 57.664 30.769 0.00 0.00 39.69 2.57
7860 11279 9.443323 TGGAAATACTTGTCGAAGAAATGAATA 57.557 29.630 0.00 0.00 39.69 1.75
7913 11332 5.420421 ACATCTAGATACATCCATTCCTCCG 59.580 44.000 4.54 0.00 0.00 4.63
7915 11334 5.832221 TCTAGATACATCCATTCCTCCGAT 58.168 41.667 0.00 0.00 0.00 4.18
7916 11335 4.815533 AGATACATCCATTCCTCCGATG 57.184 45.455 0.00 0.00 39.44 3.84
7917 11336 4.420206 AGATACATCCATTCCTCCGATGA 58.580 43.478 3.44 0.00 37.44 2.92
7921 11340 4.163427 ACATCCATTCCTCCGATGAGTAT 58.837 43.478 3.44 0.00 37.44 2.12
7922 11341 4.594920 ACATCCATTCCTCCGATGAGTATT 59.405 41.667 3.44 0.00 37.44 1.89
7923 11342 5.072329 ACATCCATTCCTCCGATGAGTATTT 59.928 40.000 3.44 0.00 37.44 1.40
7924 11343 4.960938 TCCATTCCTCCGATGAGTATTTG 58.039 43.478 0.00 0.00 36.86 2.32
7926 11345 2.509052 TCCTCCGATGAGTATTTGCG 57.491 50.000 0.00 0.00 36.86 4.85
7927 11346 1.068588 TCCTCCGATGAGTATTTGCGG 59.931 52.381 0.00 0.00 43.11 5.69
7929 11348 2.128035 CTCCGATGAGTATTTGCGGAC 58.872 52.381 0.00 0.00 45.18 4.79
7930 11349 0.852777 CCGATGAGTATTTGCGGACG 59.147 55.000 0.00 0.00 44.43 4.79
7933 11352 2.128035 GATGAGTATTTGCGGACGGAG 58.872 52.381 0.00 0.00 0.00 4.63
7935 11354 0.529992 GAGTATTTGCGGACGGAGGG 60.530 60.000 0.00 0.00 0.00 4.30
7936 11355 1.523032 GTATTTGCGGACGGAGGGG 60.523 63.158 0.00 0.00 0.00 4.79
7937 11356 2.737881 TATTTGCGGACGGAGGGGG 61.738 63.158 0.00 0.00 0.00 5.40
7943 11973 2.443577 GGACGGAGGGGGACTACC 60.444 72.222 0.00 0.00 39.11 3.18
7966 11996 0.540365 TGAAAGAAAGCCAGGCCAGG 60.540 55.000 10.48 10.48 0.00 4.45
8013 12043 0.670546 CGATGTGGTGAGTGGTGACC 60.671 60.000 0.00 0.00 0.00 4.02
8014 12044 0.396435 GATGTGGTGAGTGGTGACCA 59.604 55.000 0.00 0.00 40.04 4.02
8015 12045 1.003580 GATGTGGTGAGTGGTGACCAT 59.996 52.381 7.94 0.00 44.08 3.55
8016 12046 0.108396 TGTGGTGAGTGGTGACCATG 59.892 55.000 7.94 0.00 44.08 3.66
8017 12047 0.396435 GTGGTGAGTGGTGACCATGA 59.604 55.000 7.94 0.00 44.08 3.07
8018 12048 0.686789 TGGTGAGTGGTGACCATGAG 59.313 55.000 7.94 0.00 37.32 2.90
8041 12071 1.228644 ACAGAGCTTGGCATGGCAA 60.229 52.632 30.24 30.24 0.00 4.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 6.283694 TCACCACATATAGAGCAAACTCATC 58.716 40.000 0.00 0.00 46.09 2.92
2 3 6.239217 TCACCACATATAGAGCAAACTCAT 57.761 37.500 0.00 0.00 46.09 2.90
11 12 6.154203 TGAAAGAGCTCACCACATATAGAG 57.846 41.667 17.77 0.00 0.00 2.43
12 13 6.552725 AGATGAAAGAGCTCACCACATATAGA 59.447 38.462 17.77 0.00 0.00 1.98
13 14 6.757237 AGATGAAAGAGCTCACCACATATAG 58.243 40.000 17.77 0.00 0.00 1.31
15 16 5.627182 AGATGAAAGAGCTCACCACATAT 57.373 39.130 17.77 9.99 0.00 1.78
16 17 5.426689 AAGATGAAAGAGCTCACCACATA 57.573 39.130 17.77 0.00 0.00 2.29
18 19 3.777106 AAGATGAAAGAGCTCACCACA 57.223 42.857 17.77 10.59 0.00 4.17
19 20 7.930865 AGATATAAAGATGAAAGAGCTCACCAC 59.069 37.037 17.77 4.95 0.00 4.16
21 22 7.328249 CGAGATATAAAGATGAAAGAGCTCACC 59.672 40.741 17.77 4.78 0.00 4.02
22 23 7.328249 CCGAGATATAAAGATGAAAGAGCTCAC 59.672 40.741 17.77 7.53 0.00 3.51
23 24 7.374272 CCGAGATATAAAGATGAAAGAGCTCA 58.626 38.462 17.77 0.00 0.00 4.26
24 25 6.811170 CCCGAGATATAAAGATGAAAGAGCTC 59.189 42.308 5.27 5.27 0.00 4.09
25 26 6.295575 CCCCGAGATATAAAGATGAAAGAGCT 60.296 42.308 0.00 0.00 0.00 4.09
26 27 5.872070 CCCCGAGATATAAAGATGAAAGAGC 59.128 44.000 0.00 0.00 0.00 4.09
27 28 6.402222 CCCCCGAGATATAAAGATGAAAGAG 58.598 44.000 0.00 0.00 0.00 2.85
49 50 4.349930 TGCATAGAGGGATTAAACTACCCC 59.650 45.833 0.00 0.00 44.21 4.95
50 51 5.071923 AGTGCATAGAGGGATTAAACTACCC 59.928 44.000 0.00 0.00 43.55 3.69
51 52 6.176014 AGTGCATAGAGGGATTAAACTACC 57.824 41.667 0.00 0.00 0.00 3.18
52 53 7.769044 TGAAAGTGCATAGAGGGATTAAACTAC 59.231 37.037 0.00 0.00 0.00 2.73
53 54 7.857456 TGAAAGTGCATAGAGGGATTAAACTA 58.143 34.615 0.00 0.00 0.00 2.24
54 55 6.721318 TGAAAGTGCATAGAGGGATTAAACT 58.279 36.000 0.00 0.00 0.00 2.66
55 56 7.391148 TTGAAAGTGCATAGAGGGATTAAAC 57.609 36.000 0.00 0.00 0.00 2.01
56 57 8.593945 ATTTGAAAGTGCATAGAGGGATTAAA 57.406 30.769 0.00 0.00 0.00 1.52
57 58 8.055181 AGATTTGAAAGTGCATAGAGGGATTAA 58.945 33.333 0.00 0.00 0.00 1.40
58 59 7.577303 AGATTTGAAAGTGCATAGAGGGATTA 58.423 34.615 0.00 0.00 0.00 1.75
60 61 6.011122 AGATTTGAAAGTGCATAGAGGGAT 57.989 37.500 0.00 0.00 0.00 3.85
61 62 5.441718 AGATTTGAAAGTGCATAGAGGGA 57.558 39.130 0.00 0.00 0.00 4.20
62 63 7.814264 AATAGATTTGAAAGTGCATAGAGGG 57.186 36.000 0.00 0.00 0.00 4.30
88 89 8.792633 CAATGTTGAAAGTACATCCCTAAGAAA 58.207 33.333 0.00 0.00 35.26 2.52
89 90 8.160765 TCAATGTTGAAAGTACATCCCTAAGAA 58.839 33.333 0.00 0.00 35.26 2.52
90 91 7.685481 TCAATGTTGAAAGTACATCCCTAAGA 58.315 34.615 0.00 0.00 35.26 2.10
92 93 8.877864 AATCAATGTTGAAAGTACATCCCTAA 57.122 30.769 0.00 0.00 41.13 2.69
93 94 8.877864 AAATCAATGTTGAAAGTACATCCCTA 57.122 30.769 0.00 0.00 41.13 3.53
94 95 7.671398 AGAAATCAATGTTGAAAGTACATCCCT 59.329 33.333 0.00 0.00 41.13 4.20
110 111 7.756395 AAGTGCATCCCTATAGAAATCAATG 57.244 36.000 0.00 0.00 0.00 2.82
115 116 8.157476 ACGATAAAAGTGCATCCCTATAGAAAT 58.843 33.333 0.00 0.00 0.00 2.17
140 141 2.426842 AGCCCCTTCTCATTAGCAAC 57.573 50.000 0.00 0.00 0.00 4.17
158 159 5.787380 AGCAGGCTTTTTGGAGAATTAAAG 58.213 37.500 0.00 0.00 0.00 1.85
168 169 6.759497 AACTAGTATAAGCAGGCTTTTTGG 57.241 37.500 12.27 1.15 37.47 3.28
195 196 9.350951 GGACTATTTGGTTGGTTTATATAGCTT 57.649 33.333 0.00 0.00 0.00 3.74
196 197 8.724310 AGGACTATTTGGTTGGTTTATATAGCT 58.276 33.333 0.00 0.00 0.00 3.32
197 198 8.919777 AGGACTATTTGGTTGGTTTATATAGC 57.080 34.615 0.00 0.00 0.00 2.97
204 205 7.523415 TCTCTAAAGGACTATTTGGTTGGTTT 58.477 34.615 0.00 0.00 0.00 3.27
205 206 7.086685 TCTCTAAAGGACTATTTGGTTGGTT 57.913 36.000 0.00 0.00 0.00 3.67
207 208 7.334671 GTCTTCTCTAAAGGACTATTTGGTTGG 59.665 40.741 0.00 0.00 0.00 3.77
210 211 7.235812 ACAGTCTTCTCTAAAGGACTATTTGGT 59.764 37.037 0.00 0.00 36.99 3.67
211 212 7.616313 ACAGTCTTCTCTAAAGGACTATTTGG 58.384 38.462 0.00 0.00 36.99 3.28
218 219 9.849166 GCATATATACAGTCTTCTCTAAAGGAC 57.151 37.037 0.00 0.00 0.00 3.85
219 220 9.588096 TGCATATATACAGTCTTCTCTAAAGGA 57.412 33.333 0.00 0.00 0.00 3.36
225 226 9.539825 CAACTTTGCATATATACAGTCTTCTCT 57.460 33.333 0.00 0.00 0.00 3.10
226 227 9.319143 ACAACTTTGCATATATACAGTCTTCTC 57.681 33.333 0.00 0.00 0.00 2.87
238 239 8.547894 CGCTGATTTAGTACAACTTTGCATATA 58.452 33.333 0.00 0.00 0.00 0.86
240 241 6.592220 TCGCTGATTTAGTACAACTTTGCATA 59.408 34.615 0.00 0.00 0.00 3.14
241 242 5.411361 TCGCTGATTTAGTACAACTTTGCAT 59.589 36.000 0.00 0.00 0.00 3.96
242 243 4.752604 TCGCTGATTTAGTACAACTTTGCA 59.247 37.500 0.00 0.00 0.00 4.08
243 244 5.080068 GTCGCTGATTTAGTACAACTTTGC 58.920 41.667 0.00 0.00 0.00 3.68
244 245 6.071463 GTGTCGCTGATTTAGTACAACTTTG 58.929 40.000 0.00 0.00 0.00 2.77
245 246 5.989777 AGTGTCGCTGATTTAGTACAACTTT 59.010 36.000 0.00 0.00 0.00 2.66
246 247 5.539048 AGTGTCGCTGATTTAGTACAACTT 58.461 37.500 0.00 0.00 0.00 2.66
248 249 5.840940 AAGTGTCGCTGATTTAGTACAAC 57.159 39.130 0.00 0.00 0.00 3.32
249 250 8.542497 AAATAAGTGTCGCTGATTTAGTACAA 57.458 30.769 6.91 0.00 36.68 2.41
251 252 7.903431 CCAAAATAAGTGTCGCTGATTTAGTAC 59.097 37.037 8.84 0.00 37.29 2.73
252 253 7.065324 CCCAAAATAAGTGTCGCTGATTTAGTA 59.935 37.037 8.84 0.00 37.29 1.82
254 255 6.093495 TCCCAAAATAAGTGTCGCTGATTTAG 59.907 38.462 8.84 4.74 37.29 1.85
256 257 4.764823 TCCCAAAATAAGTGTCGCTGATTT 59.235 37.500 3.21 3.21 39.41 2.17
257 258 4.156008 GTCCCAAAATAAGTGTCGCTGATT 59.844 41.667 0.00 0.00 29.37 2.57
258 259 3.689649 GTCCCAAAATAAGTGTCGCTGAT 59.310 43.478 0.00 0.00 0.00 2.90
260 261 2.159707 CGTCCCAAAATAAGTGTCGCTG 60.160 50.000 0.00 0.00 0.00 5.18
261 262 2.073816 CGTCCCAAAATAAGTGTCGCT 58.926 47.619 0.00 0.00 0.00 4.93
262 263 1.129811 CCGTCCCAAAATAAGTGTCGC 59.870 52.381 0.00 0.00 0.00 5.19
263 264 2.671396 CTCCGTCCCAAAATAAGTGTCG 59.329 50.000 0.00 0.00 0.00 4.35
265 266 2.640826 TCCTCCGTCCCAAAATAAGTGT 59.359 45.455 0.00 0.00 0.00 3.55
267 268 3.329814 ACTTCCTCCGTCCCAAAATAAGT 59.670 43.478 0.00 0.00 0.00 2.24
268 269 3.951663 ACTTCCTCCGTCCCAAAATAAG 58.048 45.455 0.00 0.00 0.00 1.73
269 270 5.703730 ATACTTCCTCCGTCCCAAAATAA 57.296 39.130 0.00 0.00 0.00 1.40
271 272 5.906772 ATATACTTCCTCCGTCCCAAAAT 57.093 39.130 0.00 0.00 0.00 1.82
272 273 7.038799 GGTATATATACTTCCTCCGTCCCAAAA 60.039 40.741 19.78 0.00 33.81 2.44
273 274 6.438425 GGTATATATACTTCCTCCGTCCCAAA 59.562 42.308 19.78 0.00 33.81 3.28
274 275 5.954150 GGTATATATACTTCCTCCGTCCCAA 59.046 44.000 19.78 0.00 33.81 4.12
275 276 5.015497 TGGTATATATACTTCCTCCGTCCCA 59.985 44.000 19.78 4.89 33.81 4.37
276 277 5.513233 TGGTATATATACTTCCTCCGTCCC 58.487 45.833 19.78 2.58 33.81 4.46
278 279 6.435277 TGGTTGGTATATATACTTCCTCCGTC 59.565 42.308 19.78 3.65 33.81 4.79
279 280 6.317312 TGGTTGGTATATATACTTCCTCCGT 58.683 40.000 19.78 0.00 33.81 4.69
280 281 6.845758 TGGTTGGTATATATACTTCCTCCG 57.154 41.667 19.78 0.00 33.81 4.63
281 282 7.104290 GCTTGGTTGGTATATATACTTCCTCC 58.896 42.308 19.78 15.13 33.81 4.30
282 283 7.603024 GTGCTTGGTTGGTATATATACTTCCTC 59.397 40.741 19.78 6.10 33.81 3.71
283 284 7.292591 AGTGCTTGGTTGGTATATATACTTCCT 59.707 37.037 19.78 4.00 33.81 3.36
284 285 7.450903 AGTGCTTGGTTGGTATATATACTTCC 58.549 38.462 19.78 18.02 33.81 3.46
285 286 7.603024 GGAGTGCTTGGTTGGTATATATACTTC 59.397 40.741 19.78 11.46 33.81 3.01
286 287 7.450903 GGAGTGCTTGGTTGGTATATATACTT 58.549 38.462 19.78 0.00 33.81 2.24
287 288 6.013639 GGGAGTGCTTGGTTGGTATATATACT 60.014 42.308 19.78 0.13 33.81 2.12
289 290 6.088819 AGGGAGTGCTTGGTTGGTATATATA 58.911 40.000 0.00 0.00 0.00 0.86
292 293 3.123273 AGGGAGTGCTTGGTTGGTATAT 58.877 45.455 0.00 0.00 0.00 0.86
294 295 1.372501 AGGGAGTGCTTGGTTGGTAT 58.627 50.000 0.00 0.00 0.00 2.73
295 296 1.145571 AAGGGAGTGCTTGGTTGGTA 58.854 50.000 0.00 0.00 0.00 3.25
296 297 1.073923 CTAAGGGAGTGCTTGGTTGGT 59.926 52.381 0.00 0.00 0.00 3.67
297 298 1.073923 ACTAAGGGAGTGCTTGGTTGG 59.926 52.381 0.00 0.00 36.87 3.77
298 299 2.568623 ACTAAGGGAGTGCTTGGTTG 57.431 50.000 0.00 0.00 36.87 3.77
346 1490 5.565509 TCAACACATGGTAATAAGGCTTCA 58.434 37.500 1.30 0.00 0.00 3.02
352 1496 6.823182 TCACCTGATCAACACATGGTAATAAG 59.177 38.462 0.00 0.00 0.00 1.73
367 1511 4.398358 CCGTAAACTAGACTCACCTGATCA 59.602 45.833 0.00 0.00 0.00 2.92
368 1512 4.734108 GCCGTAAACTAGACTCACCTGATC 60.734 50.000 0.00 0.00 0.00 2.92
370 1514 2.490903 GCCGTAAACTAGACTCACCTGA 59.509 50.000 0.00 0.00 0.00 3.86
382 1533 0.460311 CATCGAGGAGGCCGTAAACT 59.540 55.000 0.00 0.00 0.00 2.66
400 1551 3.133003 GGAAAGAGGGAAGTCGATGATCA 59.867 47.826 0.00 0.00 0.00 2.92
432 1583 0.317770 GGTTACGTTGGTCGACGACA 60.318 55.000 27.77 12.43 45.47 4.35
459 1610 4.400567 GGGAAGGTAAAGTAGTCGCTCTTA 59.599 45.833 0.00 0.00 0.00 2.10
460 1611 3.195182 GGGAAGGTAAAGTAGTCGCTCTT 59.805 47.826 0.00 0.00 0.00 2.85
461 1612 2.759535 GGGAAGGTAAAGTAGTCGCTCT 59.240 50.000 0.00 0.00 0.00 4.09
462 1613 2.159128 GGGGAAGGTAAAGTAGTCGCTC 60.159 54.545 0.00 0.00 0.00 5.03
463 1614 1.829849 GGGGAAGGTAAAGTAGTCGCT 59.170 52.381 0.00 0.00 0.00 4.93
464 1615 1.551883 TGGGGAAGGTAAAGTAGTCGC 59.448 52.381 0.00 0.00 0.00 5.19
465 1616 2.416431 CGTGGGGAAGGTAAAGTAGTCG 60.416 54.545 0.00 0.00 0.00 4.18
466 1617 2.827921 TCGTGGGGAAGGTAAAGTAGTC 59.172 50.000 0.00 0.00 0.00 2.59
467 1618 2.564504 GTCGTGGGGAAGGTAAAGTAGT 59.435 50.000 0.00 0.00 0.00 2.73
468 1619 2.416431 CGTCGTGGGGAAGGTAAAGTAG 60.416 54.545 0.00 0.00 0.00 2.57
469 1620 1.545582 CGTCGTGGGGAAGGTAAAGTA 59.454 52.381 0.00 0.00 0.00 2.24
476 1627 1.520787 GTATGCGTCGTGGGGAAGG 60.521 63.158 0.00 0.00 0.00 3.46
477 1628 1.876714 CGTATGCGTCGTGGGGAAG 60.877 63.158 0.00 0.00 0.00 3.46
490 1642 5.331570 GTCGTTTGTTTGTACGTTTCGTATG 59.668 40.000 0.00 0.00 44.12 2.39
502 1654 4.216687 TGTTCAAAGGAGTCGTTTGTTTGT 59.783 37.500 28.26 0.00 39.34 2.83
503 1655 4.728534 TGTTCAAAGGAGTCGTTTGTTTG 58.271 39.130 28.26 11.87 39.34 2.93
504 1656 5.576447 ATGTTCAAAGGAGTCGTTTGTTT 57.424 34.783 28.26 14.59 39.34 2.83
505 1657 4.260620 CGATGTTCAAAGGAGTCGTTTGTT 60.261 41.667 28.26 16.63 39.34 2.83
518 1670 1.681780 GGGGGATCTGCGATGTTCAAA 60.682 52.381 0.00 0.00 0.00 2.69
548 1701 2.809665 GCAGGATCATGGTCCATCAGAC 60.810 54.545 26.87 5.58 45.51 3.51
552 1705 2.902486 TCTAGCAGGATCATGGTCCATC 59.098 50.000 26.87 16.78 40.90 3.51
554 1707 2.042464 GTCTAGCAGGATCATGGTCCA 58.958 52.381 26.87 5.15 40.90 4.02
561 1714 5.104817 TGTGATGAATTGTCTAGCAGGATCA 60.105 40.000 0.00 0.00 0.00 2.92
576 1729 9.090692 CAAGAAGTTTTCAGTTTTGTGATGAAT 57.909 29.630 0.00 0.00 33.26 2.57
594 1747 3.815401 CGTCCATCCAGAAACAAGAAGTT 59.185 43.478 0.00 0.00 43.89 2.66
595 1748 3.071023 TCGTCCATCCAGAAACAAGAAGT 59.929 43.478 0.00 0.00 0.00 3.01
596 1749 3.664107 TCGTCCATCCAGAAACAAGAAG 58.336 45.455 0.00 0.00 0.00 2.85
599 1752 4.436050 CGAATTCGTCCATCCAGAAACAAG 60.436 45.833 19.67 0.00 34.11 3.16
600 1753 3.435327 CGAATTCGTCCATCCAGAAACAA 59.565 43.478 19.67 0.00 34.11 2.83
606 1759 1.665679 CAACCGAATTCGTCCATCCAG 59.334 52.381 25.10 10.52 37.74 3.86
607 1760 1.276705 TCAACCGAATTCGTCCATCCA 59.723 47.619 25.10 1.04 37.74 3.41
608 1761 1.664151 GTCAACCGAATTCGTCCATCC 59.336 52.381 25.10 6.08 37.74 3.51
609 1762 2.343101 TGTCAACCGAATTCGTCCATC 58.657 47.619 25.10 13.22 37.74 3.51
610 1763 2.465860 TGTCAACCGAATTCGTCCAT 57.534 45.000 25.10 6.25 37.74 3.41
611 1764 2.465860 ATGTCAACCGAATTCGTCCA 57.534 45.000 25.10 14.04 37.74 4.02
612 1765 2.222729 CGAATGTCAACCGAATTCGTCC 60.223 50.000 25.10 9.27 44.66 4.79
630 1783 3.002862 CCCGTGTCAAATTCAGTTTCGAA 59.997 43.478 0.00 0.00 0.00 3.71
633 1786 3.813166 TCTCCCGTGTCAAATTCAGTTTC 59.187 43.478 0.00 0.00 0.00 2.78
638 1794 3.323691 TCTTCTCTCCCGTGTCAAATTCA 59.676 43.478 0.00 0.00 0.00 2.57
652 1808 2.423538 GTCTGCCTCTCTGTCTTCTCTC 59.576 54.545 0.00 0.00 0.00 3.20
653 1809 2.224992 TGTCTGCCTCTCTGTCTTCTCT 60.225 50.000 0.00 0.00 0.00 3.10
654 1810 2.164219 CTGTCTGCCTCTCTGTCTTCTC 59.836 54.545 0.00 0.00 0.00 2.87
655 1811 2.170166 CTGTCTGCCTCTCTGTCTTCT 58.830 52.381 0.00 0.00 0.00 2.85
656 1812 1.204467 CCTGTCTGCCTCTCTGTCTTC 59.796 57.143 0.00 0.00 0.00 2.87
657 1813 1.265236 CCTGTCTGCCTCTCTGTCTT 58.735 55.000 0.00 0.00 0.00 3.01
658 1814 0.114168 ACCTGTCTGCCTCTCTGTCT 59.886 55.000 0.00 0.00 0.00 3.41
659 1815 0.246086 CACCTGTCTGCCTCTCTGTC 59.754 60.000 0.00 0.00 0.00 3.51
660 1816 1.190833 CCACCTGTCTGCCTCTCTGT 61.191 60.000 0.00 0.00 0.00 3.41
661 1817 1.595882 CCACCTGTCTGCCTCTCTG 59.404 63.158 0.00 0.00 0.00 3.35
662 1818 1.611851 CCCACCTGTCTGCCTCTCT 60.612 63.158 0.00 0.00 0.00 3.10
734 1890 0.537188 ATAGAAGACAGGTGGGTGCG 59.463 55.000 0.00 0.00 0.00 5.34
735 1891 2.633488 GAATAGAAGACAGGTGGGTGC 58.367 52.381 0.00 0.00 0.00 5.01
737 1893 1.831736 CCGAATAGAAGACAGGTGGGT 59.168 52.381 0.00 0.00 0.00 4.51
747 1908 5.105310 TGGAGAAGAAGGTTCCGAATAGAAG 60.105 44.000 0.00 0.00 33.60 2.85
791 1952 1.136565 CGGCGCGATTGGAATTTGT 59.863 52.632 12.10 0.00 0.00 2.83
855 2019 1.343069 GCCGGATTCAGTAGGGAGAT 58.657 55.000 5.05 0.00 0.00 2.75
856 2020 0.759436 GGCCGGATTCAGTAGGGAGA 60.759 60.000 5.05 0.00 0.00 3.71
860 2024 2.365095 GACGGGCCGGATTCAGTAGG 62.365 65.000 31.78 0.00 0.00 3.18
862 2026 1.380785 AGACGGGCCGGATTCAGTA 60.381 57.895 31.78 0.00 0.00 2.74
863 2027 2.683933 AGACGGGCCGGATTCAGT 60.684 61.111 31.78 6.80 0.00 3.41
948 2112 2.353109 GCAGGCCAAGATCAGGTTTTTC 60.353 50.000 5.01 0.00 0.00 2.29
1453 2677 3.590574 GCCAAAGGGTCCCTGGGT 61.591 66.667 23.62 6.92 33.18 4.51
1479 2703 2.614013 GGTCCCTGGGGTGGATGT 60.614 66.667 14.00 0.00 33.65 3.06
1481 2705 2.747514 AAAGGGTCCCTGGGGTGGAT 62.748 60.000 12.53 0.00 32.13 3.41
1486 2710 4.382541 GCCAAAGGGTCCCTGGGG 62.383 72.222 24.01 21.92 32.13 4.96
1596 2820 0.981183 TCGGTGGAGGCATAGTGTTT 59.019 50.000 0.00 0.00 0.00 2.83
1635 2859 1.819632 CTGGGGCTGCGATTGTACC 60.820 63.158 0.00 0.00 0.00 3.34
1747 2971 2.519302 GGAATGTGGCCCCATCGG 60.519 66.667 0.00 0.00 0.00 4.18
1749 2973 1.152673 GGAGGAATGTGGCCCCATC 60.153 63.158 0.00 0.00 0.00 3.51
1760 2984 2.772515 GGCTGGTTACTGTAGGAGGAAT 59.227 50.000 0.00 0.00 0.00 3.01
1869 3093 1.961277 CACACCTGGGTCAAGCGAC 60.961 63.158 0.00 0.00 41.80 5.19
1887 3111 2.218603 CGTGGTAGCCCATTTACATCC 58.781 52.381 0.00 0.00 44.35 3.51
2001 3225 4.096003 AATGACTGGGACGCCGGG 62.096 66.667 2.18 0.00 0.00 5.73
2424 3727 8.621286 GGATGAACCATTAAACAGTATTGGTAG 58.379 37.037 0.00 0.00 39.72 3.18
2747 4130 8.860088 GGATAACCTTATGGAAAACAGCAATAT 58.140 33.333 0.81 0.00 37.04 1.28
3291 5194 6.862711 ACATGCAGATCTCATAAATGACAG 57.137 37.500 0.00 0.00 32.50 3.51
3310 5213 2.094026 TCAGCACTAGCACTGGTACATG 60.094 50.000 11.54 0.00 45.49 3.21
3569 5515 2.052690 TACCTCGAGCAGCCCACTC 61.053 63.158 6.99 0.00 0.00 3.51
3611 5559 7.889873 TGATAACCCTCAGAAAGAACAAAAA 57.110 32.000 0.00 0.00 0.00 1.94
3681 5695 3.478857 TCGCAACTACCTGGAAGAAAA 57.521 42.857 0.00 0.00 34.07 2.29
3900 5917 9.950680 ATACAATCAAAGAACACAAGTTACTTG 57.049 29.630 21.90 21.90 45.85 3.16
3904 5921 9.337396 ACTGATACAATCAAAGAACACAAGTTA 57.663 29.630 0.00 0.00 39.11 2.24
4166 6207 1.400494 GCACAGAAGAACAACCAACGT 59.600 47.619 0.00 0.00 0.00 3.99
4232 6275 1.004436 TCCCCCAATTTGACCCTACC 58.996 55.000 0.00 0.00 0.00 3.18
4914 7327 2.894765 GGTCATTAGGGTCTCCTCTAGC 59.105 54.545 0.00 0.00 43.66 3.42
5064 7568 2.676232 CCTTGAGAGAGGTGCTCCA 58.324 57.895 7.70 0.00 45.10 3.86
5254 7798 6.093633 GTGGTTAAGGACACAAGAATCATACC 59.906 42.308 0.00 0.00 37.54 2.73
5257 7801 5.010282 GGTGGTTAAGGACACAAGAATCAT 58.990 41.667 7.06 0.00 39.31 2.45
5411 7955 3.752222 AGCATCGATCTAGTACTAACCGG 59.248 47.826 0.00 0.00 0.00 5.28
5434 7978 7.235079 TGTATACTGACATTTTTGAAGGGGAA 58.765 34.615 4.17 0.00 0.00 3.97
5444 7989 9.102757 GATCACAGTCATGTATACTGACATTTT 57.897 33.333 24.65 13.03 45.89 1.82
5859 8436 5.131142 AGCAGCACTGGATAAAAGGTACTAT 59.869 40.000 0.00 0.00 38.49 2.12
5860 8437 4.469945 AGCAGCACTGGATAAAAGGTACTA 59.530 41.667 0.00 0.00 38.49 1.82
5939 8524 6.323203 AGTTCATTCCATCACAGAAACAAG 57.677 37.500 0.00 0.00 0.00 3.16
5966 8557 4.521146 AGGCCAAGTAATTGATCAGACTG 58.479 43.478 5.01 0.00 0.00 3.51
6098 8697 6.418057 ACAAATGTGGCTAAATTGAAGGAA 57.582 33.333 0.00 0.00 0.00 3.36
6184 8786 6.038714 GGAATCAGTAAATGGATTGAGGTGAC 59.961 42.308 0.00 0.00 34.06 3.67
6186 8788 6.039047 CAGGAATCAGTAAATGGATTGAGGTG 59.961 42.308 0.00 0.00 34.06 4.00
6194 8796 5.178096 TGAAGCAGGAATCAGTAAATGGA 57.822 39.130 0.00 0.00 0.00 3.41
6408 9013 2.742589 GTCTAGGCACTGCAAGGTTAAC 59.257 50.000 2.82 0.00 41.52 2.01
7068 9768 6.843069 AAACAAAAATTTCTGGAACATCCG 57.157 33.333 0.00 0.00 40.17 4.18
7293 10012 4.997395 ACTTATTCTGGTACAACAGCTGTG 59.003 41.667 22.49 16.62 39.20 3.66
7294 10013 5.228945 ACTTATTCTGGTACAACAGCTGT 57.771 39.130 15.25 15.25 38.70 4.40
7427 10159 3.376234 CAGCCAGATCAATACCAACAGTG 59.624 47.826 0.00 0.00 0.00 3.66
7547 10284 0.393402 CTGGCCTCTGCTTGCATGTA 60.393 55.000 3.32 0.00 37.74 2.29
7548 10285 1.677966 CTGGCCTCTGCTTGCATGT 60.678 57.895 3.32 0.00 37.74 3.21
7549 10286 1.248785 AACTGGCCTCTGCTTGCATG 61.249 55.000 3.32 0.00 37.74 4.06
7550 10287 1.076192 AACTGGCCTCTGCTTGCAT 59.924 52.632 3.32 0.00 37.74 3.96
7551 10288 1.900016 CAACTGGCCTCTGCTTGCA 60.900 57.895 3.32 0.00 37.74 4.08
7552 10289 1.860484 GACAACTGGCCTCTGCTTGC 61.860 60.000 3.32 0.00 37.74 4.01
7553 10290 0.535780 TGACAACTGGCCTCTGCTTG 60.536 55.000 3.32 0.59 37.74 4.01
7554 10291 0.403271 ATGACAACTGGCCTCTGCTT 59.597 50.000 3.32 0.00 37.74 3.91
7556 10293 0.321919 TCATGACAACTGGCCTCTGC 60.322 55.000 3.32 0.00 0.00 4.26
7605 10342 7.653647 TCGGCACAAAAACAGTTTAGATTAAT 58.346 30.769 0.00 0.00 0.00 1.40
7799 11218 1.465794 AGCTAGTCTCCCAGTTCGTC 58.534 55.000 0.00 0.00 0.00 4.20
7816 11235 2.435059 GACGGAGGGAGCACAAGC 60.435 66.667 0.00 0.00 42.56 4.01
7817 11236 1.079543 CAGACGGAGGGAGCACAAG 60.080 63.158 0.00 0.00 0.00 3.16
7818 11237 2.583441 CCAGACGGAGGGAGCACAA 61.583 63.158 0.00 0.00 0.00 3.33
7821 11240 0.909610 ATTTCCAGACGGAGGGAGCA 60.910 55.000 0.00 0.00 44.10 4.26
7822 11241 1.120530 TATTTCCAGACGGAGGGAGC 58.879 55.000 0.00 0.00 44.10 4.70
7825 11244 2.236395 ACAAGTATTTCCAGACGGAGGG 59.764 50.000 0.00 0.00 44.10 4.30
7826 11245 3.522553 GACAAGTATTTCCAGACGGAGG 58.477 50.000 0.00 0.00 44.10 4.30
7827 11246 3.119602 TCGACAAGTATTTCCAGACGGAG 60.120 47.826 0.00 0.00 44.10 4.63
7829 11248 3.226346 TCGACAAGTATTTCCAGACGG 57.774 47.619 0.00 0.00 0.00 4.79
7830 11249 4.482386 TCTTCGACAAGTATTTCCAGACG 58.518 43.478 0.00 0.00 0.00 4.18
7831 11250 6.780706 TTTCTTCGACAAGTATTTCCAGAC 57.219 37.500 0.00 0.00 0.00 3.51
7832 11251 7.158697 TCATTTCTTCGACAAGTATTTCCAGA 58.841 34.615 0.00 0.00 0.00 3.86
7833 11252 7.364522 TCATTTCTTCGACAAGTATTTCCAG 57.635 36.000 0.00 0.00 0.00 3.86
7834 11253 7.737972 TTCATTTCTTCGACAAGTATTTCCA 57.262 32.000 0.00 0.00 0.00 3.53
7886 11305 8.986991 GGAGGAATGGATGTATCTAGATGTATT 58.013 37.037 15.79 6.57 0.00 1.89
7887 11306 7.286546 CGGAGGAATGGATGTATCTAGATGTAT 59.713 40.741 15.79 9.11 0.00 2.29
7888 11307 6.603599 CGGAGGAATGGATGTATCTAGATGTA 59.396 42.308 15.79 4.44 0.00 2.29
7889 11308 5.420421 CGGAGGAATGGATGTATCTAGATGT 59.580 44.000 15.79 1.25 0.00 3.06
7890 11309 5.654209 TCGGAGGAATGGATGTATCTAGATG 59.346 44.000 15.79 0.00 0.00 2.90
7891 11310 5.832221 TCGGAGGAATGGATGTATCTAGAT 58.168 41.667 10.73 10.73 0.00 1.98
7892 11311 5.256806 TCGGAGGAATGGATGTATCTAGA 57.743 43.478 0.00 0.00 0.00 2.43
7894 11313 5.580022 TCATCGGAGGAATGGATGTATCTA 58.420 41.667 0.00 0.00 38.86 1.98
7895 11314 4.420206 TCATCGGAGGAATGGATGTATCT 58.580 43.478 0.00 0.00 38.86 1.98
7896 11315 4.221703 ACTCATCGGAGGAATGGATGTATC 59.778 45.833 0.00 0.00 45.81 2.24
7897 11316 4.163427 ACTCATCGGAGGAATGGATGTAT 58.837 43.478 0.00 0.00 45.81 2.29
7898 11317 3.576861 ACTCATCGGAGGAATGGATGTA 58.423 45.455 0.00 0.00 45.81 2.29
7899 11318 2.402564 ACTCATCGGAGGAATGGATGT 58.597 47.619 0.00 0.00 45.81 3.06
7901 11320 5.555017 CAAATACTCATCGGAGGAATGGAT 58.445 41.667 0.00 0.00 45.81 3.41
7902 11321 4.743651 GCAAATACTCATCGGAGGAATGGA 60.744 45.833 0.00 0.00 45.81 3.41
7905 11324 3.393800 CGCAAATACTCATCGGAGGAAT 58.606 45.455 0.00 0.00 45.81 3.01
7906 11325 2.483013 CCGCAAATACTCATCGGAGGAA 60.483 50.000 0.00 0.00 45.81 3.36
7907 11326 1.068588 CCGCAAATACTCATCGGAGGA 59.931 52.381 0.00 0.00 45.81 3.71
7908 11327 1.068588 TCCGCAAATACTCATCGGAGG 59.931 52.381 0.00 0.00 45.81 4.30
7910 11329 1.535226 CGTCCGCAAATACTCATCGGA 60.535 52.381 0.00 0.00 45.70 4.55
7911 11330 0.852777 CGTCCGCAAATACTCATCGG 59.147 55.000 0.00 0.00 41.30 4.18
7913 11332 2.128035 CTCCGTCCGCAAATACTCATC 58.872 52.381 0.00 0.00 0.00 2.92
7915 11334 0.174845 CCTCCGTCCGCAAATACTCA 59.825 55.000 0.00 0.00 0.00 3.41
7916 11335 0.529992 CCCTCCGTCCGCAAATACTC 60.530 60.000 0.00 0.00 0.00 2.59
7917 11336 1.520666 CCCTCCGTCCGCAAATACT 59.479 57.895 0.00 0.00 0.00 2.12
7924 11343 4.828296 TAGTCCCCCTCCGTCCGC 62.828 72.222 0.00 0.00 0.00 5.54
7926 11345 2.443577 GGTAGTCCCCCTCCGTCC 60.444 72.222 0.00 0.00 0.00 4.79
7927 11346 2.056815 GTGGTAGTCCCCCTCCGTC 61.057 68.421 0.00 0.00 0.00 4.79
7928 11347 2.038490 GTGGTAGTCCCCCTCCGT 59.962 66.667 0.00 0.00 0.00 4.69
7929 11348 1.382695 ATGTGGTAGTCCCCCTCCG 60.383 63.158 0.00 0.00 0.00 4.63
7930 11349 0.326238 TCATGTGGTAGTCCCCCTCC 60.326 60.000 0.00 0.00 0.00 4.30
7933 11352 1.913419 TCTTTCATGTGGTAGTCCCCC 59.087 52.381 0.00 0.00 0.00 5.40
7935 11354 3.440522 GCTTTCTTTCATGTGGTAGTCCC 59.559 47.826 0.00 0.00 0.00 4.46
7936 11355 3.440522 GGCTTTCTTTCATGTGGTAGTCC 59.559 47.826 0.00 0.00 0.00 3.85
7937 11356 4.072131 TGGCTTTCTTTCATGTGGTAGTC 58.928 43.478 0.00 0.00 0.00 2.59
7943 11973 1.067354 GGCCTGGCTTTCTTTCATGTG 60.067 52.381 19.68 0.00 0.00 3.21
7966 11996 0.439985 CGCGTATGCATGTATCTGGC 59.560 55.000 10.16 1.78 42.97 4.85
7967 11997 0.439985 GCGCGTATGCATGTATCTGG 59.560 55.000 10.16 0.00 42.97 3.86
7968 11998 0.091846 CGCGCGTATGCATGTATCTG 59.908 55.000 24.19 0.00 42.97 2.90
7969 11999 1.617755 GCGCGCGTATGCATGTATCT 61.618 55.000 32.35 0.00 42.97 1.98
7970 12000 1.225475 GCGCGCGTATGCATGTATC 60.225 57.895 32.35 5.70 42.97 2.24
8013 12043 1.671328 CCAAGCTCTGTCATGCTCATG 59.329 52.381 3.55 3.55 38.75 3.07
8014 12044 2.017623 GCCAAGCTCTGTCATGCTCAT 61.018 52.381 0.00 0.00 38.75 2.90
8015 12045 0.675837 GCCAAGCTCTGTCATGCTCA 60.676 55.000 0.00 0.00 38.75 4.26
8016 12046 0.675837 TGCCAAGCTCTGTCATGCTC 60.676 55.000 0.00 0.00 38.75 4.26
8017 12047 0.034380 ATGCCAAGCTCTGTCATGCT 60.034 50.000 0.00 0.00 41.82 3.79
8018 12048 0.100682 CATGCCAAGCTCTGTCATGC 59.899 55.000 6.88 0.00 0.00 4.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.