Multiple sequence alignment - TraesCS2B01G008700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G008700 chr2B 100.000 3607 0 0 1 3607 4881497 4885103 0.000000e+00 6661.0
1 TraesCS2B01G008700 chr2B 92.261 2830 196 13 781 3607 1170901 1173710 0.000000e+00 3991.0
2 TraesCS2B01G008700 chr2B 100.000 1686 0 0 4910 6595 4886406 4888091 0.000000e+00 3114.0
3 TraesCS2B01G008700 chr2B 85.849 2763 378 8 856 3607 1248819 1251579 0.000000e+00 2924.0
4 TraesCS2B01G008700 chr2B 83.116 2683 447 4 926 3607 2643174 2640497 0.000000e+00 2440.0
5 TraesCS2B01G008700 chr2B 88.875 1645 149 13 4910 6527 1265766 1264129 0.000000e+00 1993.0
6 TraesCS2B01G008700 chr2B 84.136 2055 313 8 1556 3607 1310014 1307970 0.000000e+00 1977.0
7 TraesCS2B01G008700 chr2B 84.095 2056 306 11 1556 3607 3660798 3658760 0.000000e+00 1965.0
8 TraesCS2B01G008700 chr2B 88.092 1646 160 14 4910 6527 1173712 1175349 0.000000e+00 1921.0
9 TraesCS2B01G008700 chr2B 85.674 712 81 15 4913 5613 3407774 3407073 0.000000e+00 730.0
10 TraesCS2B01G008700 chr2B 83.188 803 107 16 4910 5684 1307968 1307166 0.000000e+00 710.0
11 TraesCS2B01G008700 chr2B 83.000 800 108 16 4910 5681 3687296 3688095 0.000000e+00 699.0
12 TraesCS2B01G008700 chr2B 83.044 519 80 6 833 1350 1310515 1310004 1.300000e-126 464.0
13 TraesCS2B01G008700 chr2B 83.044 519 80 6 833 1350 3684740 3685251 1.300000e-126 464.0
14 TraesCS2B01G008700 chr2B 83.673 245 27 8 6047 6281 1306650 1306409 1.110000e-52 219.0
15 TraesCS2B01G008700 chr2B 83.133 249 32 7 6085 6328 3473485 3473242 1.110000e-52 219.0
16 TraesCS2B01G008700 chr2B 83.673 245 27 8 6047 6281 3688614 3688855 1.110000e-52 219.0
17 TraesCS2B01G008700 chr2D 91.473 3483 242 24 165 3607 6593076 6596543 0.000000e+00 4735.0
18 TraesCS2B01G008700 chr2D 84.272 2060 314 5 1550 3607 6600498 6602549 0.000000e+00 2001.0
19 TraesCS2B01G008700 chr2D 88.638 1637 153 16 4910 6522 6596545 6598172 0.000000e+00 1962.0
20 TraesCS2B01G008700 chr2D 91.576 736 54 5 4910 5640 6524955 6525687 0.000000e+00 1009.0
21 TraesCS2B01G008700 chr2D 85.369 786 101 10 4910 5681 6602551 6603336 0.000000e+00 802.0
22 TraesCS2B01G008700 chr2D 85.880 517 69 2 944 1457 6522500 6523015 1.250000e-151 547.0
23 TraesCS2B01G008700 chr2D 81.885 541 87 8 811 1350 6599984 6600514 4.690000e-121 446.0
24 TraesCS2B01G008700 chr2D 83.390 295 31 13 6045 6326 6526304 6526593 2.360000e-64 257.0
25 TraesCS2B01G008700 chr2D 83.951 81 9 3 5707 5784 6603411 6603490 2.550000e-09 75.0
26 TraesCS2B01G008700 chr2A 93.245 2339 152 5 1271 3606 4937423 4939758 0.000000e+00 3439.0
27 TraesCS2B01G008700 chr2A 84.683 2063 300 11 1550 3607 4944688 4946739 0.000000e+00 2045.0
28 TraesCS2B01G008700 chr2A 88.571 1645 154 15 4910 6527 4939761 4941398 0.000000e+00 1965.0
29 TraesCS2B01G008700 chr2A 84.829 791 101 13 4910 5681 4946741 4947531 0.000000e+00 778.0
30 TraesCS2B01G008700 chr2A 85.650 223 23 7 6082 6300 4949595 4949812 6.650000e-55 226.0
31 TraesCS2B01G008700 chrUn 86.320 519 58 7 5139 5644 313258776 313258258 2.690000e-153 553.0
32 TraesCS2B01G008700 chrUn 83.044 519 80 6 833 1350 321154808 321154297 1.300000e-126 464.0
33 TraesCS2B01G008700 chr4B 88.350 103 8 2 44 144 634192684 634192584 3.230000e-23 121.0
34 TraesCS2B01G008700 chr3B 83.654 104 13 3 44 144 659293240 659293342 1.960000e-15 95.3
35 TraesCS2B01G008700 chr3B 95.918 49 2 0 6547 6595 99509470 99509422 5.480000e-11 80.5
36 TraesCS2B01G008700 chr7B 97.959 49 1 0 6547 6595 610141739 610141691 1.180000e-12 86.1
37 TraesCS2B01G008700 chr7B 97.959 49 1 0 6547 6595 704795238 704795286 1.180000e-12 86.1
38 TraesCS2B01G008700 chr7B 95.918 49 2 0 6547 6595 708087267 708087219 5.480000e-11 80.5
39 TraesCS2B01G008700 chr5D 95.918 49 2 0 6547 6595 449625103 449625151 5.480000e-11 80.5
40 TraesCS2B01G008700 chr5B 95.918 49 2 0 6547 6595 110431197 110431149 5.480000e-11 80.5
41 TraesCS2B01G008700 chr3D 95.918 49 2 0 6547 6595 14966505 14966457 5.480000e-11 80.5
42 TraesCS2B01G008700 chr1A 95.918 49 2 0 6547 6595 99191024 99190976 5.480000e-11 80.5
43 TraesCS2B01G008700 chr3A 93.878 49 3 0 6547 6595 456435543 456435591 2.550000e-09 75.0
44 TraesCS2B01G008700 chr5A 79.817 109 13 9 44 147 585086797 585086693 3.300000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G008700 chr2B 4881497 4888091 6594 False 4887.500000 6661 100.000000 1 6595 2 chr2B.!!$F4 6594
1 TraesCS2B01G008700 chr2B 1170901 1175349 4448 False 2956.000000 3991 90.176500 781 6527 2 chr2B.!!$F2 5746
2 TraesCS2B01G008700 chr2B 1248819 1251579 2760 False 2924.000000 2924 85.849000 856 3607 1 chr2B.!!$F1 2751
3 TraesCS2B01G008700 chr2B 2640497 2643174 2677 True 2440.000000 2440 83.116000 926 3607 1 chr2B.!!$R2 2681
4 TraesCS2B01G008700 chr2B 1264129 1265766 1637 True 1993.000000 1993 88.875000 4910 6527 1 chr2B.!!$R1 1617
5 TraesCS2B01G008700 chr2B 3658760 3660798 2038 True 1965.000000 1965 84.095000 1556 3607 1 chr2B.!!$R5 2051
6 TraesCS2B01G008700 chr2B 1306409 1310515 4106 True 842.500000 1977 83.510250 833 6281 4 chr2B.!!$R6 5448
7 TraesCS2B01G008700 chr2B 3407073 3407774 701 True 730.000000 730 85.674000 4913 5613 1 chr2B.!!$R3 700
8 TraesCS2B01G008700 chr2B 3684740 3688855 4115 False 460.666667 699 83.239000 833 6281 3 chr2B.!!$F3 5448
9 TraesCS2B01G008700 chr2D 6593076 6603490 10414 False 1670.166667 4735 85.931333 165 6522 6 chr2D.!!$F2 6357
10 TraesCS2B01G008700 chr2D 6522500 6526593 4093 False 604.333333 1009 86.948667 944 6326 3 chr2D.!!$F1 5382
11 TraesCS2B01G008700 chr2A 4937423 4949812 12389 False 1690.600000 3439 87.395600 1271 6527 5 chr2A.!!$F1 5256
12 TraesCS2B01G008700 chrUn 313258258 313258776 518 True 553.000000 553 86.320000 5139 5644 1 chrUn.!!$R1 505
13 TraesCS2B01G008700 chrUn 321154297 321154808 511 True 464.000000 464 83.044000 833 1350 1 chrUn.!!$R2 517

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
143 144 0.035630 GCACCTGTTGGAGATGCTCT 60.036 55.000 0.00 0.00 37.04 4.09 F
724 747 0.038892 GCACAGCTGGTTCAATGGTG 60.039 55.000 19.93 4.69 35.60 4.17 F
1858 1917 0.326264 AGGAACGCTGCCTTCTGATT 59.674 50.000 10.43 0.00 29.44 2.57 F
2329 9386 0.036483 TCAGCTACGCAATCTGGCAA 60.036 50.000 0.00 0.00 0.00 4.52 F
3216 10273 2.036572 TCCGGGCAATTTGGGACC 59.963 61.111 0.00 0.00 0.00 4.46 F
4973 12030 1.081833 ATCTGGAGGGCAGAGTGGT 59.918 57.895 0.00 0.00 31.61 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1838 1897 0.326264 ATCAGAAGGCAGCGTTCCTT 59.674 50.000 21.55 2.84 45.98 3.36 R
1918 8966 1.668826 TGTAGGGAGGCAGGAATGTT 58.331 50.000 0.00 0.00 0.00 2.71 R
2817 9874 0.531974 GCAACGTGGTGAAGGTCTCA 60.532 55.000 0.00 0.00 0.00 3.27 R
3234 10291 1.138036 CGTACCATCTTCCGCGTCA 59.862 57.895 4.92 0.00 0.00 4.35 R
5199 12262 3.257873 CCATAGCTGTAGATGTCTCCCTG 59.742 52.174 0.00 0.00 0.00 4.45 R
6031 20858 0.107703 CCTAGTTTCGCATGCAGGGA 60.108 55.000 19.57 3.84 37.42 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.645411 GCTGCATTTTAGCGCACTG 58.355 52.632 11.47 0.00 37.31 3.66
23 24 1.408474 GCTGCATTTTAGCGCACTGC 61.408 55.000 11.47 11.29 46.98 4.40
32 33 3.562150 GCGCACTGCTAGAGCTGC 61.562 66.667 0.30 6.95 42.72 5.25
34 35 3.562150 GCACTGCTAGAGCTGCGC 61.562 66.667 0.00 0.00 42.72 6.09
35 36 3.253206 CACTGCTAGAGCTGCGCG 61.253 66.667 0.00 0.00 42.72 6.86
50 51 4.907034 GCGCGCGCTACTGCTAGA 62.907 66.667 44.38 0.00 38.26 2.43
51 52 2.723995 CGCGCGCTACTGCTAGAG 60.724 66.667 30.48 5.07 36.97 2.43
52 53 3.027449 GCGCGCTACTGCTAGAGC 61.027 66.667 26.67 0.00 41.18 4.09
53 54 2.354072 CGCGCTACTGCTAGAGCC 60.354 66.667 5.56 0.00 41.46 4.70
54 55 2.808315 GCGCTACTGCTAGAGCCA 59.192 61.111 0.00 0.00 39.28 4.75
55 56 1.299773 GCGCTACTGCTAGAGCCAG 60.300 63.158 0.00 0.00 39.28 4.85
56 57 1.299773 CGCTACTGCTAGAGCCAGC 60.300 63.158 0.00 4.67 42.15 4.85
57 58 1.299773 GCTACTGCTAGAGCCAGCG 60.300 63.158 0.00 0.00 44.88 5.18
58 59 1.299773 CTACTGCTAGAGCCAGCGC 60.300 63.158 0.00 0.00 44.88 5.92
80 81 3.165498 CGCCACGCTAAACCTGAC 58.835 61.111 0.00 0.00 0.00 3.51
81 82 2.726691 CGCCACGCTAAACCTGACG 61.727 63.158 0.00 0.00 0.00 4.35
82 83 1.666872 GCCACGCTAAACCTGACGT 60.667 57.895 0.00 0.00 39.78 4.34
83 84 1.226030 GCCACGCTAAACCTGACGTT 61.226 55.000 0.00 0.00 36.45 3.99
84 85 0.511221 CCACGCTAAACCTGACGTTG 59.489 55.000 0.00 0.00 36.45 4.10
85 86 0.110823 CACGCTAAACCTGACGTTGC 60.111 55.000 0.00 0.00 36.45 4.17
86 87 1.129809 CGCTAAACCTGACGTTGCG 59.870 57.895 0.00 0.00 39.53 4.85
87 88 1.154469 GCTAAACCTGACGTTGCGC 60.154 57.895 0.00 0.00 33.93 6.09
89 90 2.811893 CTAAACCTGACGTTGCGCGC 62.812 60.000 27.26 27.26 46.11 6.86
104 105 3.089784 CGCGCCGCAAACTAGATT 58.910 55.556 10.75 0.00 0.00 2.40
105 106 1.423845 CGCGCCGCAAACTAGATTT 59.576 52.632 10.75 0.00 0.00 2.17
106 107 0.179200 CGCGCCGCAAACTAGATTTT 60.179 50.000 10.75 0.00 0.00 1.82
107 108 1.061421 CGCGCCGCAAACTAGATTTTA 59.939 47.619 10.75 0.00 0.00 1.52
108 109 2.705154 GCGCCGCAAACTAGATTTTAG 58.295 47.619 3.15 0.00 0.00 1.85
109 110 2.705154 CGCCGCAAACTAGATTTTAGC 58.295 47.619 0.00 0.00 0.00 3.09
110 111 2.705154 GCCGCAAACTAGATTTTAGCG 58.295 47.619 8.41 8.41 36.56 4.26
111 112 2.705154 CCGCAAACTAGATTTTAGCGC 58.295 47.619 0.00 0.00 36.02 5.92
112 113 2.354196 CGCAAACTAGATTTTAGCGCG 58.646 47.619 0.00 0.00 34.11 6.86
113 114 2.222729 CGCAAACTAGATTTTAGCGCGT 60.223 45.455 8.43 0.00 35.42 6.01
114 115 3.343129 GCAAACTAGATTTTAGCGCGTC 58.657 45.455 8.43 0.00 0.00 5.19
115 116 3.584344 CAAACTAGATTTTAGCGCGTCG 58.416 45.455 8.43 0.00 0.00 5.12
140 141 3.595819 GGCACCTGTTGGAGATGC 58.404 61.111 0.00 0.00 37.04 3.91
141 142 1.001641 GGCACCTGTTGGAGATGCT 60.002 57.895 0.00 0.00 34.46 3.79
142 143 1.028868 GGCACCTGTTGGAGATGCTC 61.029 60.000 0.00 0.00 34.46 4.26
143 144 0.035630 GCACCTGTTGGAGATGCTCT 60.036 55.000 0.00 0.00 37.04 4.09
144 145 1.208052 GCACCTGTTGGAGATGCTCTA 59.792 52.381 0.00 0.00 37.04 2.43
145 146 2.741228 GCACCTGTTGGAGATGCTCTAG 60.741 54.545 0.00 0.00 37.04 2.43
146 147 1.484240 ACCTGTTGGAGATGCTCTAGC 59.516 52.381 0.00 0.00 38.14 3.42
147 148 1.761784 CCTGTTGGAGATGCTCTAGCT 59.238 52.381 3.26 0.00 37.47 3.32
148 149 2.170187 CCTGTTGGAGATGCTCTAGCTT 59.830 50.000 3.26 0.00 37.47 3.74
149 150 3.456280 CTGTTGGAGATGCTCTAGCTTC 58.544 50.000 9.25 9.25 43.17 3.86
155 156 2.886862 GATGCTCTAGCTTCTCTGCA 57.113 50.000 9.86 0.00 40.69 4.41
156 157 3.176552 GATGCTCTAGCTTCTCTGCAA 57.823 47.619 9.86 0.00 40.69 4.08
157 158 3.731089 GATGCTCTAGCTTCTCTGCAAT 58.269 45.455 9.86 0.00 40.69 3.56
158 159 4.880759 GATGCTCTAGCTTCTCTGCAATA 58.119 43.478 9.86 0.00 40.69 1.90
159 160 4.743057 TGCTCTAGCTTCTCTGCAATAA 57.257 40.909 3.26 0.00 42.66 1.40
160 161 5.089970 TGCTCTAGCTTCTCTGCAATAAA 57.910 39.130 3.26 0.00 42.66 1.40
161 162 4.872691 TGCTCTAGCTTCTCTGCAATAAAC 59.127 41.667 3.26 0.00 42.66 2.01
162 163 4.872691 GCTCTAGCTTCTCTGCAATAAACA 59.127 41.667 0.00 0.00 38.21 2.83
163 164 5.006552 GCTCTAGCTTCTCTGCAATAAACAG 59.993 44.000 0.00 0.00 38.21 3.16
164 165 5.423015 TCTAGCTTCTCTGCAATAAACAGG 58.577 41.667 0.00 0.00 35.78 4.00
165 166 4.026356 AGCTTCTCTGCAATAAACAGGT 57.974 40.909 0.00 0.00 35.78 4.00
166 167 4.006319 AGCTTCTCTGCAATAAACAGGTC 58.994 43.478 0.00 0.00 35.78 3.85
175 176 2.396590 ATAAACAGGTCGCCGATGTT 57.603 45.000 0.46 0.46 38.76 2.71
191 192 0.940833 TGTTTGCACGATTCTTGCGA 59.059 45.000 10.16 5.87 43.34 5.10
247 248 3.894547 GAGCGCGGTTGGGGAGAAA 62.895 63.158 14.00 0.00 0.00 2.52
252 253 1.677820 CGCGGTTGGGGAGAAAGTATT 60.678 52.381 0.00 0.00 0.00 1.89
268 269 1.544246 GTATTGTTGGGAGGTTGTGCC 59.456 52.381 0.00 0.00 37.11 5.01
269 270 1.178534 ATTGTTGGGAGGTTGTGCCG 61.179 55.000 0.00 0.00 40.42 5.69
283 284 4.353437 GCCGGAACTGTCGTCCGT 62.353 66.667 17.05 0.00 44.71 4.69
291 292 1.284715 CTGTCGTCCGTGCAGTGTA 59.715 57.895 0.00 0.00 0.00 2.90
295 296 0.108992 TCGTCCGTGCAGTGTATTCC 60.109 55.000 0.00 0.00 0.00 3.01
308 309 5.047188 CAGTGTATTCCGTGTGCATATACA 58.953 41.667 0.00 0.00 31.32 2.29
329 330 0.248289 GCAACTTGCAAGGCATGGAT 59.752 50.000 29.18 4.47 44.26 3.41
359 382 1.265095 CGCTACTTGGCAATGGCATAG 59.735 52.381 11.08 11.40 43.71 2.23
400 423 0.173708 GTGGAGACAAGCCGACTAGG 59.826 60.000 0.00 0.00 46.06 3.02
423 446 0.040067 GCGCCCAACTTTGAAGACTG 60.040 55.000 0.00 0.00 0.00 3.51
424 447 0.593128 CGCCCAACTTTGAAGACTGG 59.407 55.000 0.00 4.14 34.48 4.00
432 455 2.186350 TTTGAAGACTGGCGCGCATG 62.186 55.000 34.42 25.61 0.00 4.06
441 464 3.913573 GCGCGCATGTGGTAGTCG 61.914 66.667 29.10 3.64 0.00 4.18
447 470 0.721718 GCATGTGGTAGTCGTCTTGC 59.278 55.000 0.00 0.00 0.00 4.01
472 495 2.095532 CAGCAAAGATGGCTCGAAGAAG 59.904 50.000 0.00 0.00 40.23 2.85
573 596 2.584835 ATTAACAGCAGTGGCCTCAA 57.415 45.000 3.32 0.00 42.56 3.02
619 642 5.538067 TCTCAGAGATAACGATCTATGCG 57.462 43.478 0.00 0.05 46.63 4.73
643 666 1.269831 GGCGACTATGACTCCATGACC 60.270 57.143 0.00 0.00 34.31 4.02
708 731 2.413453 GAGTGGATGAAAGAGAACGCAC 59.587 50.000 0.00 0.00 0.00 5.34
709 732 2.143122 GTGGATGAAAGAGAACGCACA 58.857 47.619 0.00 0.00 0.00 4.57
710 733 2.158449 GTGGATGAAAGAGAACGCACAG 59.842 50.000 0.00 0.00 0.00 3.66
711 734 1.129437 GGATGAAAGAGAACGCACAGC 59.871 52.381 0.00 0.00 0.00 4.40
712 735 2.072298 GATGAAAGAGAACGCACAGCT 58.928 47.619 0.00 0.00 0.00 4.24
713 736 1.220529 TGAAAGAGAACGCACAGCTG 58.779 50.000 13.48 13.48 0.00 4.24
715 738 0.179045 AAAGAGAACGCACAGCTGGT 60.179 50.000 19.93 3.12 0.00 4.00
716 739 0.179045 AAGAGAACGCACAGCTGGTT 60.179 50.000 19.93 12.59 0.00 3.67
717 740 0.601311 AGAGAACGCACAGCTGGTTC 60.601 55.000 19.93 20.22 40.17 3.62
718 741 0.880278 GAGAACGCACAGCTGGTTCA 60.880 55.000 26.12 0.00 41.84 3.18
720 743 0.593128 GAACGCACAGCTGGTTCAAT 59.407 50.000 22.07 5.00 39.76 2.57
721 744 0.311790 AACGCACAGCTGGTTCAATG 59.688 50.000 19.93 7.04 0.00 2.82
724 747 0.038892 GCACAGCTGGTTCAATGGTG 60.039 55.000 19.93 4.69 35.60 4.17
725 748 0.599558 CACAGCTGGTTCAATGGTGG 59.400 55.000 19.93 0.00 34.02 4.61
740 787 5.353956 TCAATGGTGGATCTTAACGTCAATG 59.646 40.000 0.00 0.00 0.00 2.82
743 790 4.221924 TGGTGGATCTTAACGTCAATGAGA 59.778 41.667 0.00 0.00 0.00 3.27
761 808 5.644977 TGAGAATCAACGTACTCACATCT 57.355 39.130 0.00 0.00 45.97 2.90
762 809 5.641709 TGAGAATCAACGTACTCACATCTC 58.358 41.667 0.00 0.00 45.97 2.75
763 810 5.000012 AGAATCAACGTACTCACATCTCC 58.000 43.478 0.00 0.00 0.00 3.71
764 811 4.462834 AGAATCAACGTACTCACATCTCCA 59.537 41.667 0.00 0.00 0.00 3.86
765 812 3.570926 TCAACGTACTCACATCTCCAC 57.429 47.619 0.00 0.00 0.00 4.02
766 813 3.154710 TCAACGTACTCACATCTCCACT 58.845 45.455 0.00 0.00 0.00 4.00
767 814 3.190744 TCAACGTACTCACATCTCCACTC 59.809 47.826 0.00 0.00 0.00 3.51
778 825 7.129457 TCACATCTCCACTCTATTAAAGCAT 57.871 36.000 0.00 0.00 0.00 3.79
812 859 1.518903 GGCAGCAGGACAGTTGGAAC 61.519 60.000 0.00 0.00 0.00 3.62
872 919 4.023107 GGTTTCTCCTCTGTTTTTAGCCAC 60.023 45.833 0.00 0.00 0.00 5.01
897 950 2.266554 CTCCTCGTGTCATCAGCTTTC 58.733 52.381 0.00 0.00 0.00 2.62
1098 1157 0.974010 CACCCCTCGTGGTAGCCTTA 60.974 60.000 2.33 0.00 38.96 2.69
1101 1160 1.033574 CCCTCGTGGTAGCCTTAGAG 58.966 60.000 2.33 0.00 0.00 2.43
1458 1517 1.067776 AGTTCCTCGCTTCGTTACCTG 60.068 52.381 0.00 0.00 0.00 4.00
1493 1552 1.453745 GCATTCAAGGGGCGATCCA 60.454 57.895 0.00 0.00 37.22 3.41
1582 1641 6.103997 GCAATTCCACATTTCATGATGTTCT 58.896 36.000 0.00 0.00 38.15 3.01
1626 1685 5.309282 AGATCTCTCCCAAAACAGTCTTTCT 59.691 40.000 0.00 0.00 0.00 2.52
1731 1790 2.164338 GATTTGGGTAAACTTGCCGGA 58.836 47.619 5.05 0.00 33.27 5.14
1752 1811 2.972713 ACTACAAAGCCTTGGTCTCTCA 59.027 45.455 0.00 0.00 36.82 3.27
1776 1835 8.851145 TCATATAACAGTCTGTCAGGAATAGTC 58.149 37.037 5.82 0.00 0.00 2.59
1783 1842 0.837940 GTCAGGAATAGTCCCACCCC 59.162 60.000 5.39 0.00 46.30 4.95
1858 1917 0.326264 AGGAACGCTGCCTTCTGATT 59.674 50.000 10.43 0.00 29.44 2.57
1918 8966 7.471260 GCATGGCTAATAATCATTTTGTGGGTA 60.471 37.037 0.00 0.00 0.00 3.69
2063 9120 3.070734 TCAAATCATCTAGAGGCTGGAGC 59.929 47.826 0.00 0.00 41.14 4.70
2116 9173 3.626930 ACCCAACTGCTGAAACTTAACA 58.373 40.909 0.00 0.00 0.00 2.41
2136 9193 5.317733 ACATCGGTGAAAACAACTTGAAA 57.682 34.783 0.65 0.00 0.00 2.69
2140 9197 3.129638 CGGTGAAAACAACTTGAAAGGGA 59.870 43.478 0.00 0.00 0.00 4.20
2145 9202 7.201609 GGTGAAAACAACTTGAAAGGGAATTTC 60.202 37.037 0.00 0.00 46.37 2.17
2327 9384 1.432270 GGTCAGCTACGCAATCTGGC 61.432 60.000 0.00 0.00 0.00 4.85
2328 9385 0.740868 GTCAGCTACGCAATCTGGCA 60.741 55.000 0.00 0.00 33.05 4.92
2329 9386 0.036483 TCAGCTACGCAATCTGGCAA 60.036 50.000 0.00 0.00 0.00 4.52
2345 9402 2.556534 GCAATGCTTAGCCTGTCAAG 57.443 50.000 0.29 0.00 0.00 3.02
2457 9514 5.205056 AGCATACCTGAAAGTCTAGCTAGT 58.795 41.667 20.10 0.57 0.00 2.57
2478 9535 3.713858 TGTCAGAACTTGGTTGCATTG 57.286 42.857 0.00 0.00 0.00 2.82
2578 9635 8.627208 ACTTGATTTATCACACAATCAACTCT 57.373 30.769 3.70 0.00 42.06 3.24
2601 9658 7.583625 TCTCAATGTCCTTACCACTAGAGATA 58.416 38.462 0.00 0.00 0.00 1.98
2640 9697 5.397672 CCTTGGATCCTTGAACATCTCTCAT 60.398 44.000 14.23 0.00 0.00 2.90
2817 9874 3.900966 GGTACAATACCGGAGTTCCTT 57.099 47.619 9.46 0.00 39.39 3.36
2856 9913 6.258727 CGTTGCAGTATCTGAATATGTCCTTT 59.741 38.462 0.66 0.00 32.44 3.11
2859 9916 9.851686 TTGCAGTATCTGAATATGTCCTTTAAT 57.148 29.630 0.66 0.00 32.44 1.40
2874 9931 4.017126 CCTTTAATGACTTGGAAGGACCC 58.983 47.826 0.00 0.00 39.33 4.46
2932 9989 4.799255 GCGTTTTTGTCCAAGGAAATCCAT 60.799 41.667 1.67 0.00 38.89 3.41
2982 10039 3.054508 AGCTGCCTAGATGCTTTTCTTCT 60.055 43.478 0.00 0.00 32.61 2.85
2984 10041 4.511527 CTGCCTAGATGCTTTTCTTCTGA 58.488 43.478 0.00 0.00 32.25 3.27
3086 10143 6.152379 GGATGTTCATTTTCTGGTTGAAGAC 58.848 40.000 0.00 0.00 35.89 3.01
3160 10217 9.520515 AAAGGATAACATATGGTGATGTAATCC 57.479 33.333 2.68 6.69 44.73 3.01
3216 10273 2.036572 TCCGGGCAATTTGGGACC 59.963 61.111 0.00 0.00 0.00 4.46
3234 10291 3.208594 GACCGTCTACAAAGGTTGGTTT 58.791 45.455 0.00 0.00 40.14 3.27
3261 10318 2.000447 GAAGATGGTACGGTTGCTGTC 59.000 52.381 0.00 0.00 0.00 3.51
3405 10462 2.158475 AGTGGGAAATGAGTTCAAGGCA 60.158 45.455 0.00 0.00 38.06 4.75
3441 10498 2.335712 GGCCAACGGAAGCCTTGAG 61.336 63.158 0.00 0.00 46.14 3.02
3463 10520 1.338769 ACCGACTTCATAACCACCAGC 60.339 52.381 0.00 0.00 0.00 4.85
3485 10542 2.740447 GTGGTAGTTTGAGTTTAGGCGG 59.260 50.000 0.00 0.00 0.00 6.13
3543 10600 7.490657 TCTTGAATACCTACATAACCAGTGT 57.509 36.000 0.00 0.00 0.00 3.55
3545 10602 8.472413 TCTTGAATACCTACATAACCAGTGTAC 58.528 37.037 0.00 0.00 0.00 2.90
3555 10612 1.610086 CCAGTGTACCCCACCGGTA 60.610 63.158 6.87 0.00 45.97 4.02
4934 11991 2.664851 TGCGACTTTGGTCTGGCG 60.665 61.111 0.00 0.00 40.10 5.69
4973 12030 1.081833 ATCTGGAGGGCAGAGTGGT 59.918 57.895 0.00 0.00 31.61 4.16
4997 12054 3.788227 ACAAGCATAGTTGGACCAAGA 57.212 42.857 7.31 0.00 0.00 3.02
5049 12106 9.760660 GTGAGTACATTTTATGAACACATTCTC 57.239 33.333 0.00 0.00 35.69 2.87
5066 12123 9.903682 ACACATTCTCAAATAAGATTGACAAAG 57.096 29.630 0.00 0.00 35.55 2.77
5263 12326 3.314541 AACACAGAAACGGCCTACTAG 57.685 47.619 0.00 0.00 0.00 2.57
5341 12413 2.765689 ACCCAAGACATTCAACCCAA 57.234 45.000 0.00 0.00 0.00 4.12
5349 12421 5.836024 AGACATTCAACCCAACCTTACTA 57.164 39.130 0.00 0.00 0.00 1.82
5355 12427 1.565067 ACCCAACCTTACTACGGAGG 58.435 55.000 0.00 0.00 39.02 4.30
5415 12487 3.541191 GCAACACATTTGCGCTGG 58.459 55.556 9.73 0.00 35.58 4.85
5418 12490 1.005294 CAACACATTTGCGCTGGAGC 61.005 55.000 9.73 0.00 37.78 4.70
5439 12511 3.192422 GCATATATGTGCTCTCCGTCTCT 59.808 47.826 16.44 0.00 41.82 3.10
5474 12546 0.829990 TATGCTCTGCGGAATCACCA 59.170 50.000 0.00 0.00 38.90 4.17
5508 18592 1.869342 CGATGCATGATGTCTACGGCA 60.869 52.381 2.46 0.00 35.54 5.69
5552 18636 4.240096 CATTTTTCTCCATGGACAACTGC 58.760 43.478 11.44 0.00 0.00 4.40
5576 18665 7.555914 TGCAGCAATGACCTTACATTATTAAGA 59.444 33.333 0.00 0.00 38.25 2.10
5619 18733 3.876300 GCTCGTTGCTTCGACCAT 58.124 55.556 0.00 0.00 38.95 3.55
5635 18749 7.254761 GCTTCGACCATGACATGAAAATATGTA 60.255 37.037 17.24 0.00 41.15 2.29
5661 18832 6.072230 GCTATCTTTTTCCTTTTCTGTGAGCT 60.072 38.462 0.00 0.00 0.00 4.09
5665 18836 7.875971 TCTTTTTCCTTTTCTGTGAGCTAATC 58.124 34.615 0.00 0.00 0.00 1.75
5671 18842 5.702670 CCTTTTCTGTGAGCTAATCTGTTCA 59.297 40.000 0.00 0.00 0.00 3.18
5672 18843 6.373774 CCTTTTCTGTGAGCTAATCTGTTCAT 59.626 38.462 0.00 0.00 30.43 2.57
5718 18953 7.514784 TTGCATGATAATGATGGGTTTCTAG 57.485 36.000 0.00 0.00 0.00 2.43
5825 19127 3.057245 GGAACAGTGAAGCTCATTTTCCC 60.057 47.826 0.00 0.00 0.00 3.97
5831 19133 3.191371 GTGAAGCTCATTTTCCCGTTCAT 59.809 43.478 0.00 0.00 0.00 2.57
5837 19139 4.507710 CTCATTTTCCCGTTCATCTCTCA 58.492 43.478 0.00 0.00 0.00 3.27
5852 19157 2.146342 CTCTCACCACGAACTTGCAAT 58.854 47.619 0.00 0.00 0.00 3.56
5853 19158 1.872952 TCTCACCACGAACTTGCAATG 59.127 47.619 0.00 0.00 0.00 2.82
5855 19160 2.020720 TCACCACGAACTTGCAATGTT 58.979 42.857 12.23 12.23 36.86 2.71
5856 19161 2.118683 CACCACGAACTTGCAATGTTG 58.881 47.619 15.84 7.00 34.00 3.33
5857 19162 1.748493 ACCACGAACTTGCAATGTTGT 59.252 42.857 15.84 7.55 34.00 3.32
5858 19163 2.118683 CCACGAACTTGCAATGTTGTG 58.881 47.619 17.33 17.33 34.00 3.33
5865 20290 5.164012 CGAACTTGCAATGTTGTGTCAAAAA 60.164 36.000 15.84 0.00 34.00 1.94
5887 20312 7.481275 AAATTGTGATCATTTTGTGAACCAC 57.519 32.000 0.00 0.00 40.97 4.16
5913 20720 8.209869 CGCAAAAACTTTCAAGATACAAATGAG 58.790 33.333 0.00 0.00 0.00 2.90
5927 20734 7.775093 AGATACAAATGAGCAGCCATAAAGTTA 59.225 33.333 0.00 0.00 0.00 2.24
5939 20746 7.171678 GCAGCCATAAAGTTATCTCTTTCGTAT 59.828 37.037 0.00 0.00 38.40 3.06
5972 20779 8.790718 CAAGTCATATTTTGCAAGATATAGCCT 58.209 33.333 19.02 12.98 0.00 4.58
6042 20913 3.508744 AATTAGTTTTCCCTGCATGCG 57.491 42.857 14.09 7.87 0.00 4.73
6043 20914 2.192664 TTAGTTTTCCCTGCATGCGA 57.807 45.000 14.09 0.81 0.00 5.10
6097 20982 9.740239 ATAATCCTGACAATTTCAAATGAATCG 57.260 29.630 0.00 0.00 32.21 3.34
6118 21006 7.837202 ATCGATATCGTAAACACAAAAGGAA 57.163 32.000 23.61 0.00 40.80 3.36
6168 21056 5.321102 AGTTTTCCATATACACAGGTTGCA 58.679 37.500 0.00 0.00 0.00 4.08
6233 21121 3.987220 GCAACCACACCAAAATGATGTAC 59.013 43.478 0.00 0.00 0.00 2.90
6254 21143 5.048846 ACCAAATCACCAGACAAGTACTT 57.951 39.130 1.12 1.12 0.00 2.24
6256 21145 5.299279 ACCAAATCACCAGACAAGTACTTTG 59.701 40.000 5.07 1.90 42.68 2.77
6308 21200 7.276658 AGCAAAATGATAAATCATGCATTCCA 58.723 30.769 15.63 0.00 46.22 3.53
6333 21225 2.285220 CGCATGTACATCAACTACAGCC 59.715 50.000 5.07 0.00 0.00 4.85
6357 21249 4.959349 ACGAAGTGGTGGGTCCTA 57.041 55.556 0.00 0.00 42.51 2.94
6362 21254 2.092323 GAAGTGGTGGGTCCTAAATGC 58.908 52.381 0.00 0.00 37.07 3.56
6369 21261 2.683362 GTGGGTCCTAAATGCAAGCTAC 59.317 50.000 0.00 0.00 0.00 3.58
6382 21274 1.351017 CAAGCTACCCCAAAGGAGACA 59.649 52.381 0.00 0.00 39.89 3.41
6391 21283 1.477558 CCAAAGGAGACAGCAACTGGT 60.478 52.381 0.00 0.00 35.51 4.00
6394 21286 0.764369 AGGAGACAGCAACTGGTGGA 60.764 55.000 13.08 0.00 46.90 4.02
6474 21367 0.183492 TGAAGTTCAAGTGGCAGCCT 59.817 50.000 14.15 0.00 0.00 4.58
6492 21385 4.272018 CAGCCTTTGAATATCCGACTTCAG 59.728 45.833 0.00 0.00 33.25 3.02
6532 21425 7.423844 AAAAATTCCTCCACTCACTCTTTTT 57.576 32.000 0.00 0.00 0.00 1.94
6565 21458 6.339587 CCTCTGTTAGGTTGATCTCTATCC 57.660 45.833 0.00 0.00 40.94 2.59
6566 21459 6.074648 CCTCTGTTAGGTTGATCTCTATCCT 58.925 44.000 0.00 0.00 40.94 3.24
6567 21460 6.015519 CCTCTGTTAGGTTGATCTCTATCCTG 60.016 46.154 0.00 0.00 40.94 3.86
6568 21461 6.436027 TCTGTTAGGTTGATCTCTATCCTGT 58.564 40.000 0.00 0.00 0.00 4.00
6569 21462 6.897966 TCTGTTAGGTTGATCTCTATCCTGTT 59.102 38.462 0.00 0.00 0.00 3.16
6570 21463 7.068839 TCTGTTAGGTTGATCTCTATCCTGTTC 59.931 40.741 0.00 0.00 0.00 3.18
6571 21464 4.927978 AGGTTGATCTCTATCCTGTTCG 57.072 45.455 0.00 0.00 0.00 3.95
6572 21465 4.537751 AGGTTGATCTCTATCCTGTTCGA 58.462 43.478 0.00 0.00 0.00 3.71
6573 21466 4.956700 AGGTTGATCTCTATCCTGTTCGAA 59.043 41.667 0.00 0.00 0.00 3.71
6574 21467 5.044558 GGTTGATCTCTATCCTGTTCGAAC 58.955 45.833 21.42 21.42 0.00 3.95
6575 21468 4.920640 TGATCTCTATCCTGTTCGAACC 57.079 45.455 24.78 8.19 0.00 3.62
6576 21469 3.637229 TGATCTCTATCCTGTTCGAACCC 59.363 47.826 24.78 2.06 0.00 4.11
6577 21470 3.095912 TCTCTATCCTGTTCGAACCCA 57.904 47.619 24.78 9.41 0.00 4.51
6578 21471 3.437213 TCTCTATCCTGTTCGAACCCAA 58.563 45.455 24.78 10.56 0.00 4.12
6579 21472 3.194968 TCTCTATCCTGTTCGAACCCAAC 59.805 47.826 24.78 1.09 0.00 3.77
6580 21473 2.094390 TCTATCCTGTTCGAACCCAACG 60.094 50.000 24.78 9.55 0.00 4.10
6581 21474 0.321298 ATCCTGTTCGAACCCAACGG 60.321 55.000 24.78 16.12 0.00 4.44
6591 21484 2.431942 CCCAACGGGTCGAACGAG 60.432 66.667 16.42 5.45 38.25 4.18
6592 21485 3.110178 CCAACGGGTCGAACGAGC 61.110 66.667 16.42 16.29 41.42 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 1.408474 GCAGTGCGCTAAAATGCAGC 61.408 55.000 12.92 0.00 42.68 5.25
5 6 2.645411 GCAGTGCGCTAAAATGCAG 58.355 52.632 12.92 0.00 42.68 4.41
6 7 4.866088 GCAGTGCGCTAAAATGCA 57.134 50.000 12.92 0.00 39.13 3.96
15 16 3.562150 GCAGCTCTAGCAGTGCGC 61.562 66.667 10.00 7.06 45.16 6.09
39 40 1.299773 CGCTGGCTCTAGCAGTAGC 60.300 63.158 4.07 9.18 43.87 3.58
40 41 1.299773 GCGCTGGCTCTAGCAGTAG 60.300 63.158 0.00 0.58 43.87 2.57
41 42 2.808315 GCGCTGGCTCTAGCAGTA 59.192 61.111 0.00 0.00 43.87 2.74
63 64 3.165498 GTCAGGTTTAGCGTGGCG 58.835 61.111 0.00 0.00 34.05 5.69
64 65 1.226030 AACGTCAGGTTTAGCGTGGC 61.226 55.000 0.00 0.00 34.41 5.01
65 66 0.511221 CAACGTCAGGTTTAGCGTGG 59.489 55.000 0.00 0.00 36.49 4.94
66 67 0.110823 GCAACGTCAGGTTTAGCGTG 60.111 55.000 0.00 0.00 36.49 5.34
67 68 1.554042 CGCAACGTCAGGTTTAGCGT 61.554 55.000 6.75 0.00 42.64 5.07
68 69 1.129809 CGCAACGTCAGGTTTAGCG 59.870 57.895 1.21 1.21 42.20 4.26
69 70 1.154469 GCGCAACGTCAGGTTTAGC 60.154 57.895 0.30 0.00 36.49 3.09
70 71 1.129809 CGCGCAACGTCAGGTTTAG 59.870 57.895 8.75 0.00 36.49 1.85
71 72 2.945615 GCGCGCAACGTCAGGTTTA 61.946 57.895 29.10 0.00 46.11 2.01
72 73 4.307908 GCGCGCAACGTCAGGTTT 62.308 61.111 29.10 0.00 46.11 3.27
87 88 0.179200 AAAATCTAGTTTGCGGCGCG 60.179 50.000 28.09 11.83 0.00 6.86
88 89 2.705154 CTAAAATCTAGTTTGCGGCGC 58.295 47.619 27.44 27.44 0.00 6.53
89 90 2.705154 GCTAAAATCTAGTTTGCGGCG 58.295 47.619 0.51 0.51 0.00 6.46
90 91 2.705154 CGCTAAAATCTAGTTTGCGGC 58.295 47.619 10.90 0.00 35.89 6.53
91 92 2.705154 GCGCTAAAATCTAGTTTGCGG 58.295 47.619 17.27 4.87 37.91 5.69
92 93 2.354196 CGCGCTAAAATCTAGTTTGCG 58.646 47.619 5.56 13.35 39.16 4.85
93 94 3.343129 GACGCGCTAAAATCTAGTTTGC 58.657 45.455 5.73 0.00 0.00 3.68
94 95 3.584344 CGACGCGCTAAAATCTAGTTTG 58.416 45.455 5.73 0.00 0.00 2.93
95 96 3.901667 CGACGCGCTAAAATCTAGTTT 57.098 42.857 5.73 0.00 0.00 2.66
116 117 4.326766 CAACAGGTGCCCAACGCG 62.327 66.667 3.53 3.53 42.08 6.01
117 118 3.977244 CCAACAGGTGCCCAACGC 61.977 66.667 0.00 0.00 38.31 4.84
118 119 2.203280 TCCAACAGGTGCCCAACG 60.203 61.111 0.00 0.00 0.00 4.10
119 120 0.251341 ATCTCCAACAGGTGCCCAAC 60.251 55.000 0.00 0.00 0.00 3.77
120 121 0.251297 CATCTCCAACAGGTGCCCAA 60.251 55.000 0.00 0.00 0.00 4.12
121 122 1.379916 CATCTCCAACAGGTGCCCA 59.620 57.895 0.00 0.00 0.00 5.36
122 123 4.326255 CATCTCCAACAGGTGCCC 57.674 61.111 0.00 0.00 0.00 5.36
136 137 2.886862 TGCAGAGAAGCTAGAGCATC 57.113 50.000 4.01 1.08 45.16 3.91
137 138 3.842007 ATTGCAGAGAAGCTAGAGCAT 57.158 42.857 4.01 0.00 45.16 3.79
138 139 4.743057 TTATTGCAGAGAAGCTAGAGCA 57.257 40.909 4.01 0.00 45.16 4.26
139 140 4.872691 TGTTTATTGCAGAGAAGCTAGAGC 59.127 41.667 0.00 0.00 42.49 4.09
140 141 5.523188 CCTGTTTATTGCAGAGAAGCTAGAG 59.477 44.000 0.00 0.00 36.12 2.43
141 142 5.046304 ACCTGTTTATTGCAGAGAAGCTAGA 60.046 40.000 0.00 0.00 36.12 2.43
142 143 5.181748 ACCTGTTTATTGCAGAGAAGCTAG 58.818 41.667 0.00 0.00 36.12 3.42
143 144 5.165961 ACCTGTTTATTGCAGAGAAGCTA 57.834 39.130 0.00 0.00 36.12 3.32
144 145 4.006319 GACCTGTTTATTGCAGAGAAGCT 58.994 43.478 0.00 0.00 36.12 3.74
145 146 3.181516 CGACCTGTTTATTGCAGAGAAGC 60.182 47.826 0.00 0.00 36.12 3.86
146 147 3.181516 GCGACCTGTTTATTGCAGAGAAG 60.182 47.826 0.00 0.00 36.12 2.85
147 148 2.742053 GCGACCTGTTTATTGCAGAGAA 59.258 45.455 0.00 0.00 36.12 2.87
148 149 2.346803 GCGACCTGTTTATTGCAGAGA 58.653 47.619 0.00 0.00 36.12 3.10
149 150 1.398390 GGCGACCTGTTTATTGCAGAG 59.602 52.381 0.00 0.00 36.12 3.35
150 151 1.448985 GGCGACCTGTTTATTGCAGA 58.551 50.000 0.00 0.00 36.12 4.26
151 152 0.096976 CGGCGACCTGTTTATTGCAG 59.903 55.000 0.00 0.00 0.00 4.41
152 153 0.320858 TCGGCGACCTGTTTATTGCA 60.321 50.000 4.99 0.00 0.00 4.08
153 154 1.014352 ATCGGCGACCTGTTTATTGC 58.986 50.000 13.76 0.00 0.00 3.56
154 155 2.006888 ACATCGGCGACCTGTTTATTG 58.993 47.619 13.76 5.68 0.00 1.90
155 156 2.396590 ACATCGGCGACCTGTTTATT 57.603 45.000 13.76 0.00 0.00 1.40
156 157 2.396590 AACATCGGCGACCTGTTTAT 57.603 45.000 19.87 2.33 30.87 1.40
157 158 1.801771 CAAACATCGGCGACCTGTTTA 59.198 47.619 29.98 2.40 39.39 2.01
158 159 0.591170 CAAACATCGGCGACCTGTTT 59.409 50.000 26.96 26.96 41.02 2.83
159 160 1.852067 GCAAACATCGGCGACCTGTT 61.852 55.000 19.87 19.87 35.04 3.16
160 161 2.325082 GCAAACATCGGCGACCTGT 61.325 57.895 13.76 11.62 0.00 4.00
161 162 2.324330 TGCAAACATCGGCGACCTG 61.324 57.895 13.76 10.83 0.00 4.00
162 163 2.031919 TGCAAACATCGGCGACCT 59.968 55.556 13.76 0.00 0.00 3.85
163 164 2.175811 GTGCAAACATCGGCGACC 59.824 61.111 13.76 0.00 0.00 4.79
164 165 1.966493 ATCGTGCAAACATCGGCGAC 61.966 55.000 13.76 0.00 0.00 5.19
165 166 1.295357 AATCGTGCAAACATCGGCGA 61.295 50.000 13.87 13.87 0.00 5.54
166 167 0.857311 GAATCGTGCAAACATCGGCG 60.857 55.000 0.00 0.00 0.00 6.46
234 235 3.067684 ACAATACTTTCTCCCCAACCG 57.932 47.619 0.00 0.00 0.00 4.44
235 236 3.509967 CCAACAATACTTTCTCCCCAACC 59.490 47.826 0.00 0.00 0.00 3.77
245 246 3.320826 GCACAACCTCCCAACAATACTTT 59.679 43.478 0.00 0.00 0.00 2.66
247 248 2.514803 GCACAACCTCCCAACAATACT 58.485 47.619 0.00 0.00 0.00 2.12
252 253 2.203280 CGGCACAACCTCCCAACA 60.203 61.111 0.00 0.00 35.61 3.33
269 270 2.022129 CTGCACGGACGACAGTTCC 61.022 63.158 0.00 0.00 0.00 3.62
283 284 0.250081 TGCACACGGAATACACTGCA 60.250 50.000 0.00 0.00 32.35 4.41
291 292 2.158827 TGCCTGTATATGCACACGGAAT 60.159 45.455 0.00 0.00 31.31 3.01
295 296 2.279741 AGTTGCCTGTATATGCACACG 58.720 47.619 0.00 0.00 37.18 4.49
308 309 1.669440 CATGCCTTGCAAGTTGCCT 59.331 52.632 24.59 11.96 44.23 4.75
329 330 0.317160 CCAAGTAGCGTGTGTCTCCA 59.683 55.000 0.00 0.00 0.00 3.86
338 339 0.680921 ATGCCATTGCCAAGTAGCGT 60.681 50.000 0.00 0.00 36.33 5.07
340 341 2.291741 GTCTATGCCATTGCCAAGTAGC 59.708 50.000 0.00 0.00 36.33 3.58
359 382 0.040336 TCAGTCAAGTCGAGCGTGTC 60.040 55.000 0.00 0.00 0.00 3.67
400 423 2.753931 CTTCAAAGTTGGGCGCCTGC 62.754 60.000 28.56 16.44 41.71 4.85
416 439 3.121030 ACATGCGCGCCAGTCTTC 61.121 61.111 30.77 0.00 0.00 2.87
423 446 3.564027 GACTACCACATGCGCGCC 61.564 66.667 30.77 11.42 0.00 6.53
424 447 3.913573 CGACTACCACATGCGCGC 61.914 66.667 27.26 27.26 0.00 6.86
432 455 1.582968 TCGGCAAGACGACTACCAC 59.417 57.895 0.00 0.00 38.06 4.16
447 470 1.699656 CGAGCCATCTTTGCTGTCGG 61.700 60.000 0.00 0.00 39.69 4.79
462 485 1.813337 GCCTCTGGCTTCTTCGAGC 60.813 63.158 0.73 0.00 46.69 5.03
543 566 6.327934 CCACTGCTGTTAATTAGTAGTACGT 58.672 40.000 11.22 0.00 38.75 3.57
544 567 5.231568 GCCACTGCTGTTAATTAGTAGTACG 59.768 44.000 11.22 7.48 38.75 3.67
545 568 5.522824 GGCCACTGCTGTTAATTAGTAGTAC 59.477 44.000 0.00 0.00 38.75 2.73
546 569 5.424252 AGGCCACTGCTGTTAATTAGTAGTA 59.576 40.000 5.01 0.00 38.75 1.82
619 642 2.027751 GAGTCATAGTCGCCGGCC 59.972 66.667 23.46 7.92 0.00 6.13
643 666 0.108615 GTCACATCCTCCACGTCTGG 60.109 60.000 0.00 0.00 39.23 3.86
708 731 1.747355 GATCCACCATTGAACCAGCTG 59.253 52.381 6.78 6.78 0.00 4.24
709 732 1.637553 AGATCCACCATTGAACCAGCT 59.362 47.619 0.00 0.00 0.00 4.24
710 733 2.134789 AGATCCACCATTGAACCAGC 57.865 50.000 0.00 0.00 0.00 4.85
711 734 4.094887 CGTTAAGATCCACCATTGAACCAG 59.905 45.833 0.00 0.00 0.00 4.00
712 735 4.006989 CGTTAAGATCCACCATTGAACCA 58.993 43.478 0.00 0.00 0.00 3.67
713 736 4.007659 ACGTTAAGATCCACCATTGAACC 58.992 43.478 0.00 0.00 0.00 3.62
715 738 4.900684 TGACGTTAAGATCCACCATTGAA 58.099 39.130 0.00 0.00 0.00 2.69
716 739 4.545208 TGACGTTAAGATCCACCATTGA 57.455 40.909 0.00 0.00 0.00 2.57
717 740 5.353956 TCATTGACGTTAAGATCCACCATTG 59.646 40.000 0.00 0.00 0.00 2.82
718 741 5.496556 TCATTGACGTTAAGATCCACCATT 58.503 37.500 0.00 0.00 0.00 3.16
720 743 4.221924 TCTCATTGACGTTAAGATCCACCA 59.778 41.667 0.00 0.00 0.00 4.17
721 744 4.755411 TCTCATTGACGTTAAGATCCACC 58.245 43.478 0.00 0.00 0.00 4.61
724 747 7.402640 GTTGATTCTCATTGACGTTAAGATCC 58.597 38.462 0.00 0.00 0.00 3.36
725 748 7.113658 CGTTGATTCTCATTGACGTTAAGATC 58.886 38.462 0.00 0.00 0.00 2.75
740 787 5.038033 GGAGATGTGAGTACGTTGATTCTC 58.962 45.833 0.00 0.00 0.00 2.87
743 790 4.220821 AGTGGAGATGTGAGTACGTTGATT 59.779 41.667 0.00 0.00 0.00 2.57
756 803 6.465035 GGGATGCTTTAATAGAGTGGAGATGT 60.465 42.308 0.00 0.00 0.00 3.06
757 804 5.936956 GGGATGCTTTAATAGAGTGGAGATG 59.063 44.000 0.00 0.00 0.00 2.90
758 805 5.848921 AGGGATGCTTTAATAGAGTGGAGAT 59.151 40.000 0.00 0.00 0.00 2.75
759 806 5.070981 CAGGGATGCTTTAATAGAGTGGAGA 59.929 44.000 0.00 0.00 0.00 3.71
760 807 5.070981 TCAGGGATGCTTTAATAGAGTGGAG 59.929 44.000 0.00 0.00 0.00 3.86
761 808 4.968719 TCAGGGATGCTTTAATAGAGTGGA 59.031 41.667 0.00 0.00 0.00 4.02
762 809 5.163258 ACTCAGGGATGCTTTAATAGAGTGG 60.163 44.000 0.00 0.00 33.06 4.00
763 810 5.923204 ACTCAGGGATGCTTTAATAGAGTG 58.077 41.667 0.00 0.00 33.06 3.51
764 811 7.510685 TGATACTCAGGGATGCTTTAATAGAGT 59.489 37.037 0.00 0.00 37.54 3.24
765 812 7.901029 TGATACTCAGGGATGCTTTAATAGAG 58.099 38.462 0.00 0.00 0.00 2.43
766 813 7.855784 TGATACTCAGGGATGCTTTAATAGA 57.144 36.000 0.00 0.00 0.00 1.98
767 814 8.908786 TTTGATACTCAGGGATGCTTTAATAG 57.091 34.615 0.00 0.00 0.00 1.73
778 825 1.210478 GCTGCCTTTGATACTCAGGGA 59.790 52.381 0.00 0.00 0.00 4.20
812 859 2.426522 ACGTGGTGGACATGAATGAAG 58.573 47.619 0.00 0.00 39.46 3.02
872 919 1.133982 CTGATGACACGAGGAGGAGTG 59.866 57.143 0.00 0.00 43.46 3.51
897 950 1.742761 CTGCACATGACAAGGGGTAG 58.257 55.000 0.00 0.00 0.00 3.18
1098 1157 2.381941 GCCTTGGGCCTCCATCTCT 61.382 63.158 4.53 0.00 44.06 3.10
1365 1424 0.393402 TGTACTCTAGAGCCGGCGAA 60.393 55.000 23.20 9.67 0.00 4.70
1422 1481 1.661112 GAACTATTCGCCAGTGACAGC 59.339 52.381 0.00 0.00 0.00 4.40
1458 1517 1.953559 TGCTGTTGTTGTCCAGAGAC 58.046 50.000 0.00 0.00 43.83 3.36
1493 1552 0.598065 GCTGTTGAAAAGGGACGCAT 59.402 50.000 0.00 0.00 0.00 4.73
1582 1641 6.433404 AGATCTAGGTACGTGAGTTTTGAAGA 59.567 38.462 0.00 0.00 46.40 2.87
1731 1790 2.972713 TGAGAGACCAAGGCTTTGTAGT 59.027 45.455 7.87 0.00 32.21 2.73
1752 1811 7.233757 GGGACTATTCCTGACAGACTGTTATAT 59.766 40.741 10.01 2.86 42.38 0.86
1838 1897 0.326264 ATCAGAAGGCAGCGTTCCTT 59.674 50.000 21.55 2.84 45.98 3.36
1858 1917 4.172807 AGGTTAGGAAGTGTGATACCCAA 58.827 43.478 0.00 0.00 0.00 4.12
1918 8966 1.668826 TGTAGGGAGGCAGGAATGTT 58.331 50.000 0.00 0.00 0.00 2.71
2063 9120 4.260170 CAAAGAGGAGAAGAATGTCCAGG 58.740 47.826 0.00 0.00 41.48 4.45
2116 9173 4.202111 CCCTTTCAAGTTGTTTTCACCGAT 60.202 41.667 2.11 0.00 0.00 4.18
2140 9197 4.527816 TGCTACAGAATTTGCTGGGAAATT 59.472 37.500 11.48 11.48 40.20 1.82
2145 9202 3.940209 TTTGCTACAGAATTTGCTGGG 57.060 42.857 0.00 0.00 40.20 4.45
2157 9214 2.825532 GCTTTTGGGGAGATTTGCTACA 59.174 45.455 0.00 0.00 0.00 2.74
2158 9215 3.092301 AGCTTTTGGGGAGATTTGCTAC 58.908 45.455 0.00 0.00 0.00 3.58
2327 9384 2.715046 TCCTTGACAGGCTAAGCATTG 58.285 47.619 0.00 0.00 40.58 2.82
2328 9385 3.084786 GTTCCTTGACAGGCTAAGCATT 58.915 45.455 0.00 0.00 40.58 3.56
2329 9386 2.040278 TGTTCCTTGACAGGCTAAGCAT 59.960 45.455 0.00 0.00 40.58 3.79
2345 9402 6.887002 AGGTATCTCTCCTGAAAATTTGTTCC 59.113 38.462 0.00 0.00 33.62 3.62
2429 9486 4.640771 AGACTTTCAGGTATGCTTCCAA 57.359 40.909 0.00 0.00 0.00 3.53
2457 9514 3.698539 TCAATGCAACCAAGTTCTGACAA 59.301 39.130 0.00 0.00 0.00 3.18
2478 9535 7.148239 CCACCAAGAGTATTACATGAAAGGTTC 60.148 40.741 0.00 0.00 28.09 3.62
2578 9635 6.778069 CCTATCTCTAGTGGTAAGGACATTGA 59.222 42.308 0.00 0.00 0.00 2.57
2601 9658 5.398012 GGATCCAAGGTTTATCAAGCTACCT 60.398 44.000 6.95 0.00 39.96 3.08
2640 9697 7.455058 ACGGGATTATGCCTGTAATATTGTTA 58.545 34.615 0.47 0.00 45.58 2.41
2702 9759 1.909986 GCAGGAGGTTCCCTTCTAAGT 59.090 52.381 0.00 0.00 37.37 2.24
2817 9874 0.531974 GCAACGTGGTGAAGGTCTCA 60.532 55.000 0.00 0.00 0.00 3.27
2856 9913 4.325030 GGAATGGGTCCTTCCAAGTCATTA 60.325 45.833 5.24 0.00 43.98 1.90
2859 9916 1.354368 GGAATGGGTCCTTCCAAGTCA 59.646 52.381 5.24 0.00 43.98 3.41
2892 9949 4.705337 AACGCCACTTGTGTTAGAAAAA 57.295 36.364 0.00 0.00 45.60 1.94
2910 9967 4.314740 TGGATTTCCTTGGACAAAAACG 57.685 40.909 0.00 0.00 36.82 3.60
2982 10039 5.913137 ACTTGTGTTCTTTTGTGGATTCA 57.087 34.783 0.00 0.00 0.00 2.57
2984 10041 6.463360 ACAAACTTGTGTTCTTTTGTGGATT 58.537 32.000 0.00 0.00 39.96 3.01
3086 10143 5.424757 TGTTCTCATTAGATTTGTACCCCG 58.575 41.667 0.00 0.00 0.00 5.73
3160 10217 7.239972 GCTAGAGAAAGACTATTTGTTGCTTG 58.760 38.462 0.00 0.00 0.00 4.01
3216 10273 3.302870 CGTCAAACCAACCTTTGTAGACG 60.303 47.826 0.00 0.00 33.54 4.18
3234 10291 1.138036 CGTACCATCTTCCGCGTCA 59.862 57.895 4.92 0.00 0.00 4.35
3261 10318 4.474113 GCTGATTGAGCTTGAAGACTTTG 58.526 43.478 0.00 0.00 45.21 2.77
3405 10462 6.583562 GTTGGCCATATACTCAAAGACTAGT 58.416 40.000 6.09 0.00 0.00 2.57
3441 10498 1.276989 TGGTGGTTATGAAGTCGGTCC 59.723 52.381 0.00 0.00 0.00 4.46
3463 10520 2.410730 CGCCTAAACTCAAACTACCACG 59.589 50.000 0.00 0.00 0.00 4.94
3469 10526 2.367567 TCACTCCGCCTAAACTCAAACT 59.632 45.455 0.00 0.00 0.00 2.66
3485 10542 9.556030 CAATGTCAATTGATATGCATATCACTC 57.444 33.333 37.42 26.42 46.28 3.51
3502 10559 3.570975 TCAAGAGCACAAGCAATGTCAAT 59.429 39.130 0.00 0.00 41.46 2.57
3545 10602 1.295423 CAGTGAACTACCGGTGGGG 59.705 63.158 23.02 12.22 43.62 4.96
3555 10612 4.422073 TGGTTTCAGATCACAGTGAACT 57.578 40.909 7.50 7.51 32.40 3.01
4934 11991 6.971184 CAGATGAACAACCATGAATTAGCTTC 59.029 38.462 0.00 0.00 0.00 3.86
4973 12030 4.359434 TGGTCCAACTATGCTTGTTGTA 57.641 40.909 13.08 0.00 42.09 2.41
5115 12175 6.545666 TCAAAGGAGCTCAAACTAAAACATGA 59.454 34.615 17.19 1.34 0.00 3.07
5123 12183 5.930135 AGTTCTTCAAAGGAGCTCAAACTA 58.070 37.500 17.19 0.00 0.00 2.24
5125 12187 5.506686 AAGTTCTTCAAAGGAGCTCAAAC 57.493 39.130 17.19 6.27 0.00 2.93
5127 12189 6.530019 AAAAAGTTCTTCAAAGGAGCTCAA 57.470 33.333 17.19 0.00 0.00 3.02
5199 12262 3.257873 CCATAGCTGTAGATGTCTCCCTG 59.742 52.174 0.00 0.00 0.00 4.45
5263 12326 3.051081 AGCCATCACTGAACTCTTCAC 57.949 47.619 0.00 0.00 35.46 3.18
5341 12413 0.706433 TCCCACCTCCGTAGTAAGGT 59.294 55.000 1.83 0.00 46.94 3.50
5349 12421 0.972983 CACTGATCTCCCACCTCCGT 60.973 60.000 0.00 0.00 0.00 4.69
5355 12427 2.839486 TCAACACACTGATCTCCCAC 57.161 50.000 0.00 0.00 0.00 4.61
5418 12490 5.384063 AAGAGACGGAGAGCACATATATG 57.616 43.478 11.29 11.29 0.00 1.78
5439 12511 7.257722 GCAGAGCATAATAAGCCAAGTTTAAA 58.742 34.615 0.00 0.00 0.00 1.52
5508 18592 8.465273 AATGCCTCTTTTACTTCAGTTACTTT 57.535 30.769 0.00 0.00 0.00 2.66
5552 18636 8.892723 TGTCTTAATAATGTAAGGTCATTGCTG 58.107 33.333 0.00 0.00 38.32 4.41
5576 18665 1.535462 CTTCATCGTCCGCCTTTTTGT 59.465 47.619 0.00 0.00 0.00 2.83
5635 18749 6.072230 GCTCACAGAAAAGGAAAAAGATAGCT 60.072 38.462 0.00 0.00 0.00 3.32
5661 18832 7.174107 TCATCACAGTGAGATGAACAGATTA 57.826 36.000 25.23 5.70 46.36 1.75
5671 18842 2.170187 GGGCTCTTCATCACAGTGAGAT 59.830 50.000 9.64 0.00 0.00 2.75
5672 18843 1.552337 GGGCTCTTCATCACAGTGAGA 59.448 52.381 9.64 4.19 0.00 3.27
5733 18971 8.908903 TCTAGTTTTTCCAGCAAAGAAATACAA 58.091 29.630 14.37 0.01 37.52 2.41
5734 18972 8.458573 TCTAGTTTTTCCAGCAAAGAAATACA 57.541 30.769 14.37 5.14 37.52 2.29
5735 18973 9.399403 CTTCTAGTTTTTCCAGCAAAGAAATAC 57.601 33.333 7.92 7.92 36.21 1.89
5800 19102 5.279156 GGAAAATGAGCTTCACTGTTCCAAT 60.279 40.000 13.51 0.00 35.56 3.16
5825 19127 1.986378 GTTCGTGGTGAGAGATGAACG 59.014 52.381 0.00 0.00 30.56 3.95
5831 19133 0.750249 TGCAAGTTCGTGGTGAGAGA 59.250 50.000 0.00 0.00 0.00 3.10
5837 19139 1.748493 ACAACATTGCAAGTTCGTGGT 59.252 42.857 4.94 0.30 0.00 4.16
5852 19157 8.489990 AAATGATCACAATTTTTGACACAACA 57.510 26.923 0.00 0.00 0.00 3.33
5853 19158 9.212687 CAAAATGATCACAATTTTTGACACAAC 57.787 29.630 20.29 0.00 37.79 3.32
5855 19160 8.388853 CACAAAATGATCACAATTTTTGACACA 58.611 29.630 27.12 1.75 37.79 3.72
5856 19161 8.602328 TCACAAAATGATCACAATTTTTGACAC 58.398 29.630 27.12 0.00 37.79 3.67
5857 19162 8.713737 TCACAAAATGATCACAATTTTTGACA 57.286 26.923 27.12 15.78 37.79 3.58
5858 19163 9.424659 GTTCACAAAATGATCACAATTTTTGAC 57.575 29.630 27.12 16.77 36.20 3.18
5865 20290 5.221880 CGTGGTTCACAAAATGATCACAAT 58.778 37.500 0.00 0.00 39.72 2.71
5887 20312 8.060020 TCATTTGTATCTTGAAAGTTTTTGCG 57.940 30.769 0.00 0.00 0.00 4.85
5913 20720 5.294552 ACGAAAGAGATAACTTTATGGCTGC 59.705 40.000 0.00 0.00 39.71 5.25
5958 20765 8.382405 TGGATGTAAATTAGGCTATATCTTGCA 58.618 33.333 0.00 0.00 0.00 4.08
6031 20858 0.107703 CCTAGTTTCGCATGCAGGGA 60.108 55.000 19.57 3.84 37.42 4.20
6075 20959 6.816134 TCGATTCATTTGAAATTGTCAGGA 57.184 33.333 0.00 0.00 37.61 3.86
6092 20976 7.902032 TCCTTTTGTGTTTACGATATCGATTC 58.098 34.615 30.75 16.88 43.02 2.52
6095 20979 7.837202 ATTCCTTTTGTGTTTACGATATCGA 57.163 32.000 30.75 12.15 43.02 3.59
6118 21006 8.548877 TGAAAGAGGGCAGATTAGTTTACTTAT 58.451 33.333 0.00 0.00 0.00 1.73
6124 21012 5.635120 ACTTGAAAGAGGGCAGATTAGTTT 58.365 37.500 0.00 0.00 0.00 2.66
6168 21056 5.105432 CCGATGATCTCTCATGTATGACCAT 60.105 44.000 0.00 0.00 42.27 3.55
6233 21121 5.299279 ACAAAGTACTTGTCTGGTGATTTGG 59.701 40.000 9.34 0.00 45.50 3.28
6308 21200 0.253044 AGTTGATGTACATGCGGCCT 59.747 50.000 14.43 0.00 0.00 5.19
6333 21225 1.136305 ACCCACCACTTCGTCATATCG 59.864 52.381 0.00 0.00 0.00 2.92
6356 21248 3.096092 CCTTTGGGGTAGCTTGCATTTA 58.904 45.455 0.00 0.00 0.00 1.40
6357 21249 1.901833 CCTTTGGGGTAGCTTGCATTT 59.098 47.619 0.00 0.00 0.00 2.32
6362 21254 1.351017 TGTCTCCTTTGGGGTAGCTTG 59.649 52.381 0.00 0.00 36.25 4.01
6369 21261 0.111253 AGTTGCTGTCTCCTTTGGGG 59.889 55.000 0.00 0.00 0.00 4.96
6382 21274 2.111043 CCGTGTCCACCAGTTGCT 59.889 61.111 0.00 0.00 0.00 3.91
6425 21317 0.461870 CTATGCCACTACCGCTTGCA 60.462 55.000 0.00 0.00 36.23 4.08
6463 21356 3.026694 GGATATTCAAAGGCTGCCACTT 58.973 45.455 22.65 10.86 0.00 3.16
6474 21367 6.338146 CCACTACTGAAGTCGGATATTCAAA 58.662 40.000 9.11 2.29 35.76 2.69
6538 21431 7.308951 GATAGAGATCAACCTAACAGAGGCTAC 60.309 44.444 0.00 0.00 39.38 3.58
6539 21432 6.717540 GATAGAGATCAACCTAACAGAGGCTA 59.282 42.308 0.00 0.00 39.38 3.93
6540 21433 5.538433 GATAGAGATCAACCTAACAGAGGCT 59.462 44.000 0.00 0.00 39.38 4.58
6541 21434 5.279256 GGATAGAGATCAACCTAACAGAGGC 60.279 48.000 0.00 0.00 40.54 4.70
6542 21435 6.015519 CAGGATAGAGATCAACCTAACAGAGG 60.016 46.154 0.00 0.00 41.73 3.69
6543 21436 6.549364 ACAGGATAGAGATCAACCTAACAGAG 59.451 42.308 0.00 0.00 33.27 3.35
6544 21437 6.436027 ACAGGATAGAGATCAACCTAACAGA 58.564 40.000 0.00 0.00 33.27 3.41
6545 21438 6.723298 ACAGGATAGAGATCAACCTAACAG 57.277 41.667 0.00 0.00 33.27 3.16
6546 21439 6.183360 CGAACAGGATAGAGATCAACCTAACA 60.183 42.308 0.00 0.00 33.27 2.41
6547 21440 6.039493 TCGAACAGGATAGAGATCAACCTAAC 59.961 42.308 0.00 0.00 33.27 2.34
6548 21441 6.127101 TCGAACAGGATAGAGATCAACCTAA 58.873 40.000 0.00 0.00 33.27 2.69
6549 21442 5.691896 TCGAACAGGATAGAGATCAACCTA 58.308 41.667 0.00 0.00 33.27 3.08
6550 21443 4.537751 TCGAACAGGATAGAGATCAACCT 58.462 43.478 0.00 0.00 33.27 3.50
6551 21444 4.920640 TCGAACAGGATAGAGATCAACC 57.079 45.455 0.00 0.00 33.27 3.77
6552 21445 5.044558 GGTTCGAACAGGATAGAGATCAAC 58.955 45.833 28.24 2.70 33.27 3.18
6553 21446 4.099573 GGGTTCGAACAGGATAGAGATCAA 59.900 45.833 28.24 0.00 33.27 2.57
6554 21447 3.637229 GGGTTCGAACAGGATAGAGATCA 59.363 47.826 28.24 0.00 33.27 2.92
6555 21448 3.637229 TGGGTTCGAACAGGATAGAGATC 59.363 47.826 28.24 7.35 0.00 2.75
6556 21449 3.643237 TGGGTTCGAACAGGATAGAGAT 58.357 45.455 28.24 0.00 0.00 2.75
6557 21450 3.095912 TGGGTTCGAACAGGATAGAGA 57.904 47.619 28.24 0.00 0.00 3.10
6558 21451 3.522553 GTTGGGTTCGAACAGGATAGAG 58.477 50.000 28.24 0.00 0.00 2.43
6559 21452 2.094390 CGTTGGGTTCGAACAGGATAGA 60.094 50.000 28.24 5.31 0.00 1.98
6560 21453 2.268298 CGTTGGGTTCGAACAGGATAG 58.732 52.381 28.24 11.67 0.00 2.08
6561 21454 1.066716 CCGTTGGGTTCGAACAGGATA 60.067 52.381 28.24 7.72 0.00 2.59
6562 21455 0.321298 CCGTTGGGTTCGAACAGGAT 60.321 55.000 28.24 0.00 0.00 3.24
6563 21456 1.070105 CCGTTGGGTTCGAACAGGA 59.930 57.895 28.24 11.13 0.00 3.86
6564 21457 1.964373 CCCGTTGGGTTCGAACAGG 60.964 63.158 28.24 20.40 38.25 4.00
6565 21458 3.650369 CCCGTTGGGTTCGAACAG 58.350 61.111 28.24 13.66 38.25 3.16
6575 21468 3.110178 GCTCGTTCGACCCGTTGG 61.110 66.667 3.87 0.00 37.80 3.77
6576 21469 3.110178 GGCTCGTTCGACCCGTTG 61.110 66.667 3.87 0.91 0.00 4.10
6577 21470 4.368543 GGGCTCGTTCGACCCGTT 62.369 66.667 13.65 0.00 32.92 4.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.