Multiple sequence alignment - TraesCS2B01G003600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G003600 chr2B 100.000 3896 0 0 1 3896 1830881 1834776 0.000000e+00 7195.0
1 TraesCS2B01G003600 chr2D 95.847 2143 60 5 953 3066 7167541 7169683 0.000000e+00 3437.0
2 TraesCS2B01G003600 chr2D 84.062 389 46 10 3439 3818 7169844 7170225 1.030000e-95 361.0
3 TraesCS2B01G003600 chr2A 94.398 2249 92 13 839 3066 5675955 5678190 0.000000e+00 3424.0
4 TraesCS2B01G003600 chr2A 94.881 2012 80 6 1073 3066 62721903 62723909 0.000000e+00 3123.0
5 TraesCS2B01G003600 chr2A 84.703 438 49 13 3439 3871 5678328 5678752 4.650000e-114 422.0
6 TraesCS2B01G003600 chr2A 84.055 439 50 15 3439 3871 62724047 62724471 4.690000e-109 405.0
7 TraesCS2B01G003600 chr2A 85.366 205 11 8 849 1037 62721434 62721635 1.100000e-45 195.0
8 TraesCS2B01G003600 chr2A 100.000 29 0 0 3615 3643 12835691 12835719 2.000000e-03 54.7
9 TraesCS2B01G003600 chr5D 96.621 799 23 4 1 796 127880987 127881784 0.000000e+00 1323.0
10 TraesCS2B01G003600 chr5D 80.672 119 18 5 3123 3239 62104100 62104215 1.930000e-13 87.9
11 TraesCS2B01G003600 chr5D 97.619 42 1 0 791 832 127882177 127882218 5.400000e-09 73.1
12 TraesCS2B01G003600 chr6B 96.101 795 25 4 3 796 683645003 683645792 0.000000e+00 1291.0
13 TraesCS2B01G003600 chr6B 83.261 687 80 13 119 795 633848271 633847610 2.000000e-167 599.0
14 TraesCS2B01G003600 chr6B 84.946 93 12 2 3148 3239 202126906 202126997 4.140000e-15 93.5
15 TraesCS2B01G003600 chr6B 97.619 42 1 0 791 832 683646185 683646226 5.400000e-09 73.1
16 TraesCS2B01G003600 chr1A 87.037 810 75 12 1 795 50705157 50705951 0.000000e+00 887.0
17 TraesCS2B01G003600 chr1A 85.556 90 11 2 3154 3242 544173926 544173838 4.140000e-15 93.5
18 TraesCS2B01G003600 chr3B 86.989 807 75 12 1 795 770094622 770095410 0.000000e+00 881.0
19 TraesCS2B01G003600 chr3B 86.924 803 75 12 5 795 770091216 770092000 0.000000e+00 874.0
20 TraesCS2B01G003600 chr3B 84.981 799 89 18 4 792 545011091 545010314 0.000000e+00 782.0
21 TraesCS2B01G003600 chr7B 86.600 806 77 16 4 795 374424728 374423940 0.000000e+00 861.0
22 TraesCS2B01G003600 chr7B 81.538 130 12 5 3154 3272 151403631 151403503 3.200000e-16 97.1
23 TraesCS2B01G003600 chr7A 86.449 797 75 18 1 774 48911206 48911992 0.000000e+00 843.0
24 TraesCS2B01G003600 chr7A 85.593 118 15 2 3156 3272 181013685 181013801 5.290000e-24 122.0
25 TraesCS2B01G003600 chr5B 83.863 818 91 24 1 795 509467931 509468730 0.000000e+00 741.0
26 TraesCS2B01G003600 chrUn 96.305 406 15 0 2563 2968 478150119 478150524 0.000000e+00 667.0
27 TraesCS2B01G003600 chrUn 86.207 87 10 2 3154 3239 16475836 16475921 4.140000e-15 93.5
28 TraesCS2B01G003600 chr1B 85.528 615 63 9 189 795 524272645 524273241 1.540000e-173 619.0
29 TraesCS2B01G003600 chr1B 81.890 127 19 4 3146 3271 6464402 6464525 1.910000e-18 104.0
30 TraesCS2B01G003600 chr4B 97.059 272 8 0 525 796 502993698 502993969 3.550000e-125 459.0
31 TraesCS2B01G003600 chr4B 84.211 95 12 3 3146 3239 593370320 593370228 5.360000e-14 89.8
32 TraesCS2B01G003600 chr4B 97.619 42 1 0 791 832 502994362 502994403 5.400000e-09 73.1
33 TraesCS2B01G003600 chr7D 83.333 120 19 1 3153 3271 127218900 127218781 4.120000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G003600 chr2B 1830881 1834776 3895 False 7195.00 7195 100.000000 1 3896 1 chr2B.!!$F1 3895
1 TraesCS2B01G003600 chr2D 7167541 7170225 2684 False 1899.00 3437 89.954500 953 3818 2 chr2D.!!$F1 2865
2 TraesCS2B01G003600 chr2A 5675955 5678752 2797 False 1923.00 3424 89.550500 839 3871 2 chr2A.!!$F2 3032
3 TraesCS2B01G003600 chr2A 62721434 62724471 3037 False 1241.00 3123 88.100667 849 3871 3 chr2A.!!$F3 3022
4 TraesCS2B01G003600 chr5D 127880987 127882218 1231 False 698.05 1323 97.120000 1 832 2 chr5D.!!$F2 831
5 TraesCS2B01G003600 chr6B 683645003 683646226 1223 False 682.05 1291 96.860000 3 832 2 chr6B.!!$F2 829
6 TraesCS2B01G003600 chr6B 633847610 633848271 661 True 599.00 599 83.261000 119 795 1 chr6B.!!$R1 676
7 TraesCS2B01G003600 chr1A 50705157 50705951 794 False 887.00 887 87.037000 1 795 1 chr1A.!!$F1 794
8 TraesCS2B01G003600 chr3B 770091216 770095410 4194 False 877.50 881 86.956500 1 795 2 chr3B.!!$F1 794
9 TraesCS2B01G003600 chr3B 545010314 545011091 777 True 782.00 782 84.981000 4 792 1 chr3B.!!$R1 788
10 TraesCS2B01G003600 chr7B 374423940 374424728 788 True 861.00 861 86.600000 4 795 1 chr7B.!!$R2 791
11 TraesCS2B01G003600 chr7A 48911206 48911992 786 False 843.00 843 86.449000 1 774 1 chr7A.!!$F1 773
12 TraesCS2B01G003600 chr5B 509467931 509468730 799 False 741.00 741 83.863000 1 795 1 chr5B.!!$F1 794
13 TraesCS2B01G003600 chr1B 524272645 524273241 596 False 619.00 619 85.528000 189 795 1 chr1B.!!$F2 606
14 TraesCS2B01G003600 chr4B 502993698 502994403 705 False 266.05 459 97.339000 525 832 2 chr4B.!!$F1 307

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
842 4299 0.468226 TATTGAGTCCACCCATCGGC 59.532 55.0 0.00 0.0 0.00 5.54 F
946 4403 0.743701 CTCATCTCACACAGCCAGCC 60.744 60.0 0.00 0.0 0.00 4.85 F
2016 5747 0.390209 GCTTCAATGCGCCATTTGGT 60.390 50.0 4.18 0.0 37.57 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1923 5654 0.108138 AGTCGCCCTCAAATCCTTCG 60.108 55.0 0.00 0.0 0.00 3.79 R
2445 6405 0.523519 GCTTTGGCAGGAAGCTGTAC 59.476 55.0 15.01 0.0 44.63 2.90 R
3241 7207 0.029035 CGTCGGGAGATACTTGTCGG 59.971 60.0 0.00 0.0 43.27 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
378 395 1.282157 CTCCCGTTCCCATTCCTTCTT 59.718 52.381 0.00 0.00 0.00 2.52
530 555 1.388133 GGGGCTCCCAGGTTCATTT 59.612 57.895 7.34 0.00 44.65 2.32
578 610 3.449018 TGCAGTTTCTCTCCTATCTGTCC 59.551 47.826 0.00 0.00 0.00 4.02
640 686 2.585330 TGTTCTTGGAGCATCAAAGCA 58.415 42.857 0.00 0.00 45.99 3.91
796 4253 6.183361 TGGTGAACATGTATAGGAGGATTCTG 60.183 42.308 0.00 0.00 0.00 3.02
797 4254 5.698545 GTGAACATGTATAGGAGGATTCTGC 59.301 44.000 0.00 0.00 0.00 4.26
798 4255 5.604231 TGAACATGTATAGGAGGATTCTGCT 59.396 40.000 0.00 0.00 44.14 4.24
799 4256 5.480642 ACATGTATAGGAGGATTCTGCTG 57.519 43.478 5.05 0.00 41.88 4.41
800 4257 5.150715 ACATGTATAGGAGGATTCTGCTGA 58.849 41.667 5.05 0.00 41.88 4.26
801 4258 5.604231 ACATGTATAGGAGGATTCTGCTGAA 59.396 40.000 5.05 8.59 41.88 3.02
802 4259 5.798125 TGTATAGGAGGATTCTGCTGAAG 57.202 43.478 5.05 0.00 41.88 3.02
803 4260 3.767902 ATAGGAGGATTCTGCTGAAGC 57.232 47.619 12.62 12.62 41.88 3.86
807 4264 2.008329 GAGGATTCTGCTGAAGCTGTG 58.992 52.381 19.08 0.00 42.66 3.66
808 4265 1.627329 AGGATTCTGCTGAAGCTGTGA 59.373 47.619 19.08 0.00 42.66 3.58
809 4266 2.239150 AGGATTCTGCTGAAGCTGTGAT 59.761 45.455 19.08 0.00 42.66 3.06
811 4268 3.442977 GGATTCTGCTGAAGCTGTGATTT 59.557 43.478 19.08 0.00 42.66 2.17
812 4269 3.909776 TTCTGCTGAAGCTGTGATTTG 57.090 42.857 1.33 0.00 42.66 2.32
813 4270 2.854963 TCTGCTGAAGCTGTGATTTGT 58.145 42.857 3.61 0.00 42.66 2.83
814 4271 4.006780 TCTGCTGAAGCTGTGATTTGTA 57.993 40.909 3.61 0.00 42.66 2.41
815 4272 3.748048 TCTGCTGAAGCTGTGATTTGTAC 59.252 43.478 3.61 0.00 42.66 2.90
816 4273 2.813754 TGCTGAAGCTGTGATTTGTACC 59.186 45.455 3.61 0.00 42.66 3.34
817 4274 2.159653 GCTGAAGCTGTGATTTGTACCG 60.160 50.000 0.00 0.00 38.21 4.02
818 4275 3.325870 CTGAAGCTGTGATTTGTACCGA 58.674 45.455 0.00 0.00 0.00 4.69
819 4276 3.325870 TGAAGCTGTGATTTGTACCGAG 58.674 45.455 0.00 0.00 0.00 4.63
820 4277 3.244078 TGAAGCTGTGATTTGTACCGAGT 60.244 43.478 0.00 0.00 0.00 4.18
821 4278 3.402628 AGCTGTGATTTGTACCGAGTT 57.597 42.857 0.00 0.00 0.00 3.01
822 4279 4.530710 AGCTGTGATTTGTACCGAGTTA 57.469 40.909 0.00 0.00 0.00 2.24
823 4280 5.086104 AGCTGTGATTTGTACCGAGTTAT 57.914 39.130 0.00 0.00 0.00 1.89
824 4281 6.216801 AGCTGTGATTTGTACCGAGTTATA 57.783 37.500 0.00 0.00 0.00 0.98
825 4282 6.817184 AGCTGTGATTTGTACCGAGTTATAT 58.183 36.000 0.00 0.00 0.00 0.86
826 4283 7.272978 AGCTGTGATTTGTACCGAGTTATATT 58.727 34.615 0.00 0.00 0.00 1.28
827 4284 7.224753 AGCTGTGATTTGTACCGAGTTATATTG 59.775 37.037 0.00 0.00 0.00 1.90
828 4285 7.223971 GCTGTGATTTGTACCGAGTTATATTGA 59.776 37.037 0.00 0.00 0.00 2.57
829 4286 8.642908 TGTGATTTGTACCGAGTTATATTGAG 57.357 34.615 0.00 0.00 0.00 3.02
830 4287 8.255206 TGTGATTTGTACCGAGTTATATTGAGT 58.745 33.333 0.00 0.00 0.00 3.41
831 4288 8.753175 GTGATTTGTACCGAGTTATATTGAGTC 58.247 37.037 0.00 0.00 0.00 3.36
832 4289 7.924412 TGATTTGTACCGAGTTATATTGAGTCC 59.076 37.037 0.00 0.00 0.00 3.85
833 4290 6.778834 TTGTACCGAGTTATATTGAGTCCA 57.221 37.500 0.00 0.00 0.00 4.02
834 4291 6.140303 TGTACCGAGTTATATTGAGTCCAC 57.860 41.667 0.00 0.00 0.00 4.02
835 4292 4.667519 ACCGAGTTATATTGAGTCCACC 57.332 45.455 0.00 0.00 0.00 4.61
836 4293 3.387050 ACCGAGTTATATTGAGTCCACCC 59.613 47.826 0.00 0.00 0.00 4.61
837 4294 3.386726 CCGAGTTATATTGAGTCCACCCA 59.613 47.826 0.00 0.00 0.00 4.51
838 4295 4.040461 CCGAGTTATATTGAGTCCACCCAT 59.960 45.833 0.00 0.00 0.00 4.00
839 4296 5.230942 CGAGTTATATTGAGTCCACCCATC 58.769 45.833 0.00 0.00 0.00 3.51
840 4297 5.215252 AGTTATATTGAGTCCACCCATCG 57.785 43.478 0.00 0.00 0.00 3.84
841 4298 4.040461 AGTTATATTGAGTCCACCCATCGG 59.960 45.833 0.00 0.00 0.00 4.18
842 4299 0.468226 TATTGAGTCCACCCATCGGC 59.532 55.000 0.00 0.00 0.00 5.54
867 4324 2.202797 CTGAGTCCACCCATCGCG 60.203 66.667 0.00 0.00 0.00 5.87
900 4357 3.198200 GTCTCCTTCCTTCCTTTACTCCC 59.802 52.174 0.00 0.00 0.00 4.30
922 4379 4.530857 CGCACCCACTCCCGGATC 62.531 72.222 0.73 0.00 0.00 3.36
923 4380 3.083997 GCACCCACTCCCGGATCT 61.084 66.667 0.73 0.00 0.00 2.75
924 4381 3.095347 GCACCCACTCCCGGATCTC 62.095 68.421 0.73 0.00 0.00 2.75
946 4403 0.743701 CTCATCTCACACAGCCAGCC 60.744 60.000 0.00 0.00 0.00 4.85
973 4440 1.200519 CAGATCCGAACCCTACCCAA 58.799 55.000 0.00 0.00 0.00 4.12
976 4443 1.619807 ATCCGAACCCTACCCAACCG 61.620 60.000 0.00 0.00 0.00 4.44
1050 4528 3.735037 GAACGGCCCGGACATCCTC 62.735 68.421 8.57 0.00 0.00 3.71
1245 4976 4.471726 CGCGTCGTCTACCGCCTT 62.472 66.667 0.00 0.00 46.83 4.35
1637 5368 2.042435 CTCCTTCGAGCTCCCCCT 60.042 66.667 8.47 0.00 0.00 4.79
1926 5657 3.913548 CCAACATTCATTGGTGTCGAA 57.086 42.857 0.00 0.00 41.81 3.71
1938 5669 1.087501 GTGTCGAAGGATTTGAGGGC 58.912 55.000 0.00 0.00 39.66 5.19
1944 5675 2.224066 CGAAGGATTTGAGGGCGACTAT 60.224 50.000 0.00 0.00 0.00 2.12
1965 5696 5.722021 ATGGTGGAATTGAGTTTGGTAAC 57.278 39.130 0.00 0.00 34.36 2.50
1992 5723 1.093159 CTTCACTGGCTGAGGCATTC 58.907 55.000 9.81 0.00 40.87 2.67
1995 5726 0.674581 CACTGGCTGAGGCATTCGAA 60.675 55.000 9.81 0.00 40.87 3.71
2016 5747 0.390209 GCTTCAATGCGCCATTTGGT 60.390 50.000 4.18 0.00 37.57 3.67
2079 5810 2.040412 GGATCACAAGGACAAGACCCTT 59.960 50.000 0.00 0.00 44.36 3.95
2175 6027 0.988832 TGGTAACCCCGAGCAAAGAT 59.011 50.000 0.00 0.00 35.15 2.40
2445 6405 2.026449 GGAGCCTATCCCCATCATGAAG 60.026 54.545 0.00 0.00 43.01 3.02
2460 6420 3.935993 GAAGTACAGCTTCCTGCCA 57.064 52.632 0.00 0.00 45.95 4.92
2550 6510 1.175654 TACACTATGCGTCGAACCCA 58.824 50.000 0.00 0.00 0.00 4.51
2607 6567 2.280628 GTTAAGCTTCCTGTGGATCCG 58.719 52.381 0.00 0.00 0.00 4.18
2865 6825 4.535526 ATTTAATGAAGTTGGCCACACC 57.464 40.909 3.88 0.00 39.84 4.16
2921 6881 4.020839 TGGTACCTTCTTTGTACTGTAGCC 60.021 45.833 14.36 0.00 38.84 3.93
3048 7008 4.891168 TGTGATTATTCATCAAGGCTGCAT 59.109 37.500 0.50 0.00 43.93 3.96
3069 7029 7.142021 TGCATAATCTTTTGCAAGTTTCGTAA 58.858 30.769 0.00 0.00 45.30 3.18
3070 7030 7.812191 TGCATAATCTTTTGCAAGTTTCGTAAT 59.188 29.630 0.00 0.00 45.30 1.89
3071 7031 8.103924 GCATAATCTTTTGCAAGTTTCGTAATG 58.896 33.333 0.00 0.42 38.72 1.90
3072 7032 8.586273 CATAATCTTTTGCAAGTTTCGTAATGG 58.414 33.333 0.00 0.00 0.00 3.16
3073 7033 5.759506 TCTTTTGCAAGTTTCGTAATGGA 57.240 34.783 0.00 0.00 0.00 3.41
3074 7034 6.325919 TCTTTTGCAAGTTTCGTAATGGAT 57.674 33.333 0.00 0.00 0.00 3.41
3075 7035 6.148948 TCTTTTGCAAGTTTCGTAATGGATG 58.851 36.000 0.00 0.00 0.00 3.51
3076 7036 3.485947 TGCAAGTTTCGTAATGGATGC 57.514 42.857 0.00 0.00 0.00 3.91
3077 7037 2.816672 TGCAAGTTTCGTAATGGATGCA 59.183 40.909 0.00 0.00 39.95 3.96
3078 7038 3.443329 TGCAAGTTTCGTAATGGATGCAT 59.557 39.130 0.00 0.00 37.61 3.96
3079 7039 4.637977 TGCAAGTTTCGTAATGGATGCATA 59.362 37.500 0.00 0.00 37.61 3.14
3080 7040 5.207768 GCAAGTTTCGTAATGGATGCATAG 58.792 41.667 0.00 0.00 33.00 2.23
3081 7041 5.007626 GCAAGTTTCGTAATGGATGCATAGA 59.992 40.000 0.00 0.00 33.00 1.98
3082 7042 6.458206 GCAAGTTTCGTAATGGATGCATAGAA 60.458 38.462 0.00 4.50 33.00 2.10
3083 7043 6.851222 AGTTTCGTAATGGATGCATAGAAG 57.149 37.500 0.00 0.00 0.00 2.85
3084 7044 6.582636 AGTTTCGTAATGGATGCATAGAAGA 58.417 36.000 0.00 0.00 0.00 2.87
3085 7045 7.047891 AGTTTCGTAATGGATGCATAGAAGAA 58.952 34.615 0.00 3.47 0.00 2.52
3086 7046 6.844696 TTCGTAATGGATGCATAGAAGAAC 57.155 37.500 0.00 0.00 0.00 3.01
3087 7047 5.912892 TCGTAATGGATGCATAGAAGAACA 58.087 37.500 0.00 0.00 0.00 3.18
3088 7048 6.524734 TCGTAATGGATGCATAGAAGAACAT 58.475 36.000 0.00 0.00 0.00 2.71
3094 7054 6.653020 TGGATGCATAGAAGAACATGTACTT 58.347 36.000 0.00 0.00 0.00 2.24
3104 7068 6.734104 AAGAACATGTACTTCTGCTCATTC 57.266 37.500 0.00 0.00 0.00 2.67
3111 7075 3.278668 ACTTCTGCTCATTCTGGATGG 57.721 47.619 0.00 0.00 36.37 3.51
3150 7116 8.059798 AGTTCTGCTACGACCTTTAGTAATTA 57.940 34.615 0.00 0.00 0.00 1.40
3151 7117 8.693625 AGTTCTGCTACGACCTTTAGTAATTAT 58.306 33.333 0.00 0.00 0.00 1.28
3152 7118 9.956720 GTTCTGCTACGACCTTTAGTAATTATA 57.043 33.333 0.00 0.00 0.00 0.98
3160 7126 9.819754 ACGACCTTTAGTAATTATATACTCCCT 57.180 33.333 0.00 0.00 37.34 4.20
3168 7134 8.846423 AGTAATTATATACTCCCTCCATCCAG 57.154 38.462 0.00 0.00 30.26 3.86
3169 7135 8.633724 AGTAATTATATACTCCCTCCATCCAGA 58.366 37.037 0.00 0.00 30.26 3.86
3170 7136 9.268282 GTAATTATATACTCCCTCCATCCAGAA 57.732 37.037 0.00 0.00 0.00 3.02
3171 7137 8.940012 AATTATATACTCCCTCCATCCAGAAT 57.060 34.615 0.00 0.00 0.00 2.40
3172 7138 8.940012 ATTATATACTCCCTCCATCCAGAATT 57.060 34.615 0.00 0.00 0.00 2.17
3174 7140 7.741554 ATATACTCCCTCCATCCAGAATTAC 57.258 40.000 0.00 0.00 0.00 1.89
3175 7141 4.014273 ACTCCCTCCATCCAGAATTACT 57.986 45.455 0.00 0.00 0.00 2.24
3176 7142 4.375313 ACTCCCTCCATCCAGAATTACTT 58.625 43.478 0.00 0.00 0.00 2.24
3177 7143 4.164988 ACTCCCTCCATCCAGAATTACTTG 59.835 45.833 0.00 0.00 0.00 3.16
3178 7144 4.111577 TCCCTCCATCCAGAATTACTTGT 58.888 43.478 0.00 0.00 0.00 3.16
3179 7145 4.164221 TCCCTCCATCCAGAATTACTTGTC 59.836 45.833 0.00 0.00 0.00 3.18
3180 7146 4.122776 CCTCCATCCAGAATTACTTGTCG 58.877 47.826 0.00 0.00 0.00 4.35
3181 7147 3.531538 TCCATCCAGAATTACTTGTCGC 58.468 45.455 0.00 0.00 0.00 5.19
3182 7148 3.055458 TCCATCCAGAATTACTTGTCGCA 60.055 43.478 0.00 0.00 0.00 5.10
3183 7149 3.879295 CCATCCAGAATTACTTGTCGCAT 59.121 43.478 0.00 0.00 0.00 4.73
3184 7150 5.056480 CCATCCAGAATTACTTGTCGCATA 58.944 41.667 0.00 0.00 0.00 3.14
3185 7151 5.527214 CCATCCAGAATTACTTGTCGCATAA 59.473 40.000 0.00 0.00 0.00 1.90
3186 7152 6.038161 CCATCCAGAATTACTTGTCGCATAAA 59.962 38.462 0.00 0.00 0.00 1.40
3187 7153 6.662414 TCCAGAATTACTTGTCGCATAAAG 57.338 37.500 0.00 0.00 0.00 1.85
3188 7154 5.584649 TCCAGAATTACTTGTCGCATAAAGG 59.415 40.000 0.00 0.00 0.00 3.11
3189 7155 5.220854 CCAGAATTACTTGTCGCATAAAGGG 60.221 44.000 0.00 0.00 0.00 3.95
3190 7156 5.584649 CAGAATTACTTGTCGCATAAAGGGA 59.415 40.000 0.00 0.00 36.77 4.20
3191 7157 6.260936 CAGAATTACTTGTCGCATAAAGGGAT 59.739 38.462 0.00 0.00 41.61 3.85
3192 7158 7.441157 CAGAATTACTTGTCGCATAAAGGGATA 59.559 37.037 0.00 0.00 41.61 2.59
3193 7159 7.990886 AGAATTACTTGTCGCATAAAGGGATAA 59.009 33.333 0.00 0.00 41.61 1.75
3194 7160 8.514330 AATTACTTGTCGCATAAAGGGATAAA 57.486 30.769 0.00 0.00 39.23 1.40
3195 7161 7.925043 TTACTTGTCGCATAAAGGGATAAAA 57.075 32.000 0.00 0.00 39.23 1.52
3196 7162 6.190954 ACTTGTCGCATAAAGGGATAAAAC 57.809 37.500 0.00 0.00 39.23 2.43
3197 7163 5.124936 ACTTGTCGCATAAAGGGATAAAACC 59.875 40.000 0.00 0.00 39.23 3.27
3198 7164 4.850680 TGTCGCATAAAGGGATAAAACCT 58.149 39.130 0.00 0.00 41.61 3.50
3199 7165 4.638421 TGTCGCATAAAGGGATAAAACCTG 59.362 41.667 0.00 0.00 41.61 4.00
3200 7166 4.879545 GTCGCATAAAGGGATAAAACCTGA 59.120 41.667 0.00 0.00 41.61 3.86
3201 7167 5.531287 GTCGCATAAAGGGATAAAACCTGAT 59.469 40.000 0.00 0.00 41.61 2.90
3202 7168 5.530915 TCGCATAAAGGGATAAAACCTGATG 59.469 40.000 0.00 0.00 38.63 3.07
3203 7169 5.299279 CGCATAAAGGGATAAAACCTGATGT 59.701 40.000 0.00 0.00 38.63 3.06
3204 7170 6.485313 CGCATAAAGGGATAAAACCTGATGTA 59.515 38.462 0.00 0.00 38.63 2.29
3205 7171 7.174946 CGCATAAAGGGATAAAACCTGATGTAT 59.825 37.037 0.00 0.00 38.63 2.29
3206 7172 8.515414 GCATAAAGGGATAAAACCTGATGTATC 58.485 37.037 0.00 0.00 38.63 2.24
3207 7173 9.799106 CATAAAGGGATAAAACCTGATGTATCT 57.201 33.333 0.00 0.00 38.63 1.98
3210 7176 8.568617 AAGGGATAAAACCTGATGTATCTAGT 57.431 34.615 0.00 0.00 38.63 2.57
3211 7177 9.670442 AAGGGATAAAACCTGATGTATCTAGTA 57.330 33.333 0.00 0.00 38.63 1.82
3212 7178 9.091220 AGGGATAAAACCTGATGTATCTAGTAC 57.909 37.037 0.00 0.00 36.85 2.73
3213 7179 9.091220 GGGATAAAACCTGATGTATCTAGTACT 57.909 37.037 0.00 0.00 34.27 2.73
3243 7209 6.987386 ACATCTAGATACATCCTTTTCTCCG 58.013 40.000 4.54 0.00 0.00 4.63
3244 7210 6.778069 ACATCTAGATACATCCTTTTCTCCGA 59.222 38.462 4.54 0.00 0.00 4.55
3245 7211 6.636562 TCTAGATACATCCTTTTCTCCGAC 57.363 41.667 0.00 0.00 0.00 4.79
3246 7212 6.127101 TCTAGATACATCCTTTTCTCCGACA 58.873 40.000 0.00 0.00 0.00 4.35
3247 7213 5.677319 AGATACATCCTTTTCTCCGACAA 57.323 39.130 0.00 0.00 0.00 3.18
3248 7214 5.665459 AGATACATCCTTTTCTCCGACAAG 58.335 41.667 0.00 0.00 0.00 3.16
3249 7215 3.771577 ACATCCTTTTCTCCGACAAGT 57.228 42.857 0.00 0.00 0.00 3.16
3250 7216 4.884668 ACATCCTTTTCTCCGACAAGTA 57.115 40.909 0.00 0.00 0.00 2.24
3251 7217 5.422214 ACATCCTTTTCTCCGACAAGTAT 57.578 39.130 0.00 0.00 0.00 2.12
3252 7218 5.420409 ACATCCTTTTCTCCGACAAGTATC 58.580 41.667 0.00 0.00 0.00 2.24
3253 7219 5.187967 ACATCCTTTTCTCCGACAAGTATCT 59.812 40.000 0.00 0.00 0.00 1.98
3254 7220 5.326200 TCCTTTTCTCCGACAAGTATCTC 57.674 43.478 0.00 0.00 0.00 2.75
3255 7221 4.159879 TCCTTTTCTCCGACAAGTATCTCC 59.840 45.833 0.00 0.00 0.00 3.71
3256 7222 4.434520 CTTTTCTCCGACAAGTATCTCCC 58.565 47.826 0.00 0.00 0.00 4.30
3257 7223 1.676746 TCTCCGACAAGTATCTCCCG 58.323 55.000 0.00 0.00 0.00 5.14
3258 7224 1.211212 TCTCCGACAAGTATCTCCCGA 59.789 52.381 0.00 0.00 0.00 5.14
3259 7225 1.334243 CTCCGACAAGTATCTCCCGAC 59.666 57.143 0.00 0.00 0.00 4.79
3260 7226 0.029035 CCGACAAGTATCTCCCGACG 59.971 60.000 0.00 0.00 0.00 5.12
3261 7227 0.029035 CGACAAGTATCTCCCGACGG 59.971 60.000 6.99 6.99 0.00 4.79
3262 7228 1.386533 GACAAGTATCTCCCGACGGA 58.613 55.000 17.49 0.15 36.45 4.69
3286 7252 7.027874 AGGGAGTATTCACTATTGAAAACCA 57.972 36.000 0.00 0.00 45.01 3.67
3296 7262 6.599244 TCACTATTGAAAACCATCATCACCTC 59.401 38.462 0.00 0.00 0.00 3.85
3297 7263 6.375174 CACTATTGAAAACCATCATCACCTCA 59.625 38.462 0.00 0.00 0.00 3.86
3298 7264 5.909621 ATTGAAAACCATCATCACCTCAG 57.090 39.130 0.00 0.00 0.00 3.35
3299 7265 4.371624 TGAAAACCATCATCACCTCAGT 57.628 40.909 0.00 0.00 0.00 3.41
3301 7267 5.139727 TGAAAACCATCATCACCTCAGTTT 58.860 37.500 0.00 0.00 0.00 2.66
3349 7323 2.115910 CCCTGGCCTCTGCACAAA 59.884 61.111 3.32 0.00 40.13 2.83
3350 7324 1.304713 CCCTGGCCTCTGCACAAAT 60.305 57.895 3.32 0.00 40.13 2.32
3351 7325 1.601419 CCCTGGCCTCTGCACAAATG 61.601 60.000 3.32 0.00 40.13 2.32
3366 7340 4.937015 GCACAAATGCCCAGATTATTTGTT 59.063 37.500 10.75 0.00 46.87 2.83
3367 7341 5.412286 GCACAAATGCCCAGATTATTTGTTT 59.588 36.000 10.75 0.00 46.87 2.83
3368 7342 6.402442 GCACAAATGCCCAGATTATTTGTTTC 60.402 38.462 10.75 4.44 46.87 2.78
3369 7343 5.868801 ACAAATGCCCAGATTATTTGTTTCG 59.131 36.000 8.32 0.00 46.87 3.46
3370 7344 4.654091 ATGCCCAGATTATTTGTTTCGG 57.346 40.909 0.00 0.00 0.00 4.30
3371 7345 3.426615 TGCCCAGATTATTTGTTTCGGT 58.573 40.909 0.00 0.00 0.00 4.69
3372 7346 3.192422 TGCCCAGATTATTTGTTTCGGTG 59.808 43.478 0.00 0.00 0.00 4.94
3373 7347 3.192633 GCCCAGATTATTTGTTTCGGTGT 59.807 43.478 0.00 0.00 0.00 4.16
3374 7348 4.396790 GCCCAGATTATTTGTTTCGGTGTA 59.603 41.667 0.00 0.00 0.00 2.90
3375 7349 5.067283 GCCCAGATTATTTGTTTCGGTGTAT 59.933 40.000 0.00 0.00 0.00 2.29
3376 7350 6.725246 CCCAGATTATTTGTTTCGGTGTATC 58.275 40.000 0.00 0.00 0.00 2.24
3377 7351 6.317642 CCCAGATTATTTGTTTCGGTGTATCA 59.682 38.462 0.00 0.00 0.00 2.15
3378 7352 7.409697 CCAGATTATTTGTTTCGGTGTATCAG 58.590 38.462 0.00 0.00 0.00 2.90
3379 7353 6.907212 CAGATTATTTGTTTCGGTGTATCAGC 59.093 38.462 0.00 0.00 0.00 4.26
3380 7354 6.597672 AGATTATTTGTTTCGGTGTATCAGCA 59.402 34.615 0.00 0.00 0.00 4.41
3381 7355 6.751514 TTATTTGTTTCGGTGTATCAGCAT 57.248 33.333 0.00 0.00 0.00 3.79
3382 7356 4.678509 TTTGTTTCGGTGTATCAGCATC 57.321 40.909 0.00 0.00 0.00 3.91
3383 7357 2.267426 TGTTTCGGTGTATCAGCATCG 58.733 47.619 0.00 0.00 43.63 3.84
3384 7358 1.593006 GTTTCGGTGTATCAGCATCGG 59.407 52.381 0.00 0.00 42.63 4.18
3385 7359 0.821517 TTCGGTGTATCAGCATCGGT 59.178 50.000 0.00 0.00 42.63 4.69
3386 7360 0.821517 TCGGTGTATCAGCATCGGTT 59.178 50.000 0.00 0.00 42.63 4.44
3387 7361 1.206132 TCGGTGTATCAGCATCGGTTT 59.794 47.619 0.00 0.00 42.63 3.27
3388 7362 1.593006 CGGTGTATCAGCATCGGTTTC 59.407 52.381 0.00 0.00 39.12 2.78
3389 7363 2.627945 GGTGTATCAGCATCGGTTTCA 58.372 47.619 0.00 0.00 0.00 2.69
3390 7364 3.206150 GGTGTATCAGCATCGGTTTCAT 58.794 45.455 0.00 0.00 0.00 2.57
3391 7365 3.248602 GGTGTATCAGCATCGGTTTCATC 59.751 47.826 0.00 0.00 0.00 2.92
3392 7366 4.122776 GTGTATCAGCATCGGTTTCATCT 58.877 43.478 0.00 0.00 0.00 2.90
3393 7367 4.025396 GTGTATCAGCATCGGTTTCATCTG 60.025 45.833 0.00 0.00 0.00 2.90
3394 7368 2.028420 TCAGCATCGGTTTCATCTGG 57.972 50.000 0.00 0.00 0.00 3.86
3395 7369 1.278985 TCAGCATCGGTTTCATCTGGT 59.721 47.619 0.00 0.00 0.00 4.00
3396 7370 1.399440 CAGCATCGGTTTCATCTGGTG 59.601 52.381 0.00 0.00 0.00 4.17
3397 7371 1.003580 AGCATCGGTTTCATCTGGTGT 59.996 47.619 0.00 0.00 0.00 4.16
3398 7372 1.131126 GCATCGGTTTCATCTGGTGTG 59.869 52.381 0.00 0.00 0.00 3.82
3399 7373 2.698803 CATCGGTTTCATCTGGTGTGA 58.301 47.619 0.00 0.00 0.00 3.58
3400 7374 3.273434 CATCGGTTTCATCTGGTGTGAT 58.727 45.455 0.00 0.00 0.00 3.06
3401 7375 2.972625 TCGGTTTCATCTGGTGTGATC 58.027 47.619 0.00 0.00 0.00 2.92
3402 7376 1.660607 CGGTTTCATCTGGTGTGATCG 59.339 52.381 0.00 0.00 0.00 3.69
3403 7377 2.009774 GGTTTCATCTGGTGTGATCGG 58.990 52.381 0.00 0.00 0.00 4.18
3404 7378 1.398390 GTTTCATCTGGTGTGATCGGC 59.602 52.381 0.00 0.00 0.00 5.54
3405 7379 0.612744 TTCATCTGGTGTGATCGGCA 59.387 50.000 0.00 0.00 0.00 5.69
3406 7380 0.176449 TCATCTGGTGTGATCGGCAG 59.824 55.000 0.00 0.00 0.00 4.85
3407 7381 1.153289 ATCTGGTGTGATCGGCAGC 60.153 57.895 10.99 10.99 35.19 5.25
3408 7382 2.599645 ATCTGGTGTGATCGGCAGCC 62.600 60.000 0.00 0.00 33.85 4.85
3409 7383 3.320879 CTGGTGTGATCGGCAGCCT 62.321 63.158 10.54 0.00 33.85 4.58
3410 7384 1.960040 CTGGTGTGATCGGCAGCCTA 61.960 60.000 10.54 0.00 33.85 3.93
3411 7385 1.220749 GGTGTGATCGGCAGCCTAA 59.779 57.895 10.54 0.00 0.00 2.69
3412 7386 0.392461 GGTGTGATCGGCAGCCTAAA 60.392 55.000 10.54 0.00 0.00 1.85
3413 7387 0.727398 GTGTGATCGGCAGCCTAAAC 59.273 55.000 10.54 2.56 0.00 2.01
3414 7388 0.613260 TGTGATCGGCAGCCTAAACT 59.387 50.000 10.54 0.00 0.00 2.66
3415 7389 1.828595 TGTGATCGGCAGCCTAAACTA 59.171 47.619 10.54 0.00 0.00 2.24
3416 7390 2.235155 TGTGATCGGCAGCCTAAACTAA 59.765 45.455 10.54 0.00 0.00 2.24
3417 7391 3.267483 GTGATCGGCAGCCTAAACTAAA 58.733 45.455 10.54 0.00 0.00 1.85
3418 7392 3.877508 GTGATCGGCAGCCTAAACTAAAT 59.122 43.478 10.54 0.00 0.00 1.40
3419 7393 5.054477 GTGATCGGCAGCCTAAACTAAATA 58.946 41.667 10.54 0.00 0.00 1.40
3420 7394 5.177696 GTGATCGGCAGCCTAAACTAAATAG 59.822 44.000 10.54 0.00 0.00 1.73
3421 7395 5.069914 TGATCGGCAGCCTAAACTAAATAGA 59.930 40.000 10.54 0.00 0.00 1.98
3422 7396 4.945246 TCGGCAGCCTAAACTAAATAGAG 58.055 43.478 10.54 0.00 0.00 2.43
3423 7397 4.647853 TCGGCAGCCTAAACTAAATAGAGA 59.352 41.667 10.54 0.00 0.00 3.10
3424 7398 5.128171 TCGGCAGCCTAAACTAAATAGAGAA 59.872 40.000 10.54 0.00 0.00 2.87
3425 7399 5.992217 CGGCAGCCTAAACTAAATAGAGAAT 59.008 40.000 10.54 0.00 0.00 2.40
3426 7400 6.146347 CGGCAGCCTAAACTAAATAGAGAATC 59.854 42.308 10.54 0.00 0.00 2.52
3427 7401 6.992715 GGCAGCCTAAACTAAATAGAGAATCA 59.007 38.462 3.29 0.00 37.82 2.57
3428 7402 7.172361 GGCAGCCTAAACTAAATAGAGAATCAG 59.828 40.741 3.29 0.00 37.82 2.90
3429 7403 7.172361 GCAGCCTAAACTAAATAGAGAATCAGG 59.828 40.741 0.00 0.00 37.82 3.86
3430 7404 8.424918 CAGCCTAAACTAAATAGAGAATCAGGA 58.575 37.037 0.00 0.00 37.82 3.86
3431 7405 8.646900 AGCCTAAACTAAATAGAGAATCAGGAG 58.353 37.037 0.00 0.00 37.82 3.69
3432 7406 8.425703 GCCTAAACTAAATAGAGAATCAGGAGT 58.574 37.037 0.00 0.00 37.82 3.85
3449 7423 2.162408 GGAGTACTTCAGTTGGCATTGC 59.838 50.000 0.00 0.00 0.00 3.56
3452 7426 2.514205 ACTTCAGTTGGCATTGCAAC 57.486 45.000 11.39 12.33 0.00 4.17
3478 7452 8.092521 TGATTTGTTTGCTTTCAAGTTGAAAA 57.907 26.923 26.60 13.95 44.69 2.29
3479 7453 8.229137 TGATTTGTTTGCTTTCAAGTTGAAAAG 58.771 29.630 26.60 21.14 44.69 2.27
3487 7461 5.725864 GCTTTCAAGTTGAAAAGCTTGCAAG 60.726 40.000 26.60 22.44 44.69 4.01
3494 7468 3.520569 TGAAAAGCTTGCAAGTTTGGTC 58.479 40.909 26.42 24.16 29.55 4.02
3496 7470 1.780503 AAGCTTGCAAGTTTGGTCCT 58.219 45.000 25.36 10.76 0.00 3.85
3507 7481 5.335191 GCAAGTTTGGTCCTGAGATGTTTAG 60.335 44.000 0.00 0.00 0.00 1.85
3508 7482 4.327680 AGTTTGGTCCTGAGATGTTTAGC 58.672 43.478 0.00 0.00 0.00 3.09
3509 7483 4.072131 GTTTGGTCCTGAGATGTTTAGCA 58.928 43.478 0.00 0.00 0.00 3.49
3543 7517 8.561738 TTTTCTCATTATCTTCCAACTGTACC 57.438 34.615 0.00 0.00 0.00 3.34
3554 7528 8.958119 TCTTCCAACTGTACCATACATATTTC 57.042 34.615 0.00 0.00 38.15 2.17
3555 7529 8.544622 TCTTCCAACTGTACCATACATATTTCA 58.455 33.333 0.00 0.00 38.15 2.69
3598 7574 5.100943 GGTAACTGACTTATTCACGGAGAC 58.899 45.833 0.00 0.00 0.00 3.36
3600 7576 5.470047 AACTGACTTATTCACGGAGACTT 57.530 39.130 0.00 0.00 0.00 3.01
3645 7621 6.906659 ACAGATTCAAACATAGTTTCTGCTG 58.093 36.000 8.45 8.46 34.00 4.41
3656 7632 7.951591 ACATAGTTTCTGCTGTTTAACCAAAT 58.048 30.769 0.00 0.00 0.00 2.32
3657 7633 8.421002 ACATAGTTTCTGCTGTTTAACCAAATT 58.579 29.630 0.00 0.00 0.00 1.82
3658 7634 9.906660 CATAGTTTCTGCTGTTTAACCAAATTA 57.093 29.630 0.00 0.00 0.00 1.40
3669 7645 8.528044 TGTTTAACCAAATTAAAGAGTGAGGT 57.472 30.769 0.00 0.00 42.21 3.85
3681 7657 6.613153 AAAGAGTGAGGTAGTAATTGCTCT 57.387 37.500 0.00 0.00 34.04 4.09
3684 7660 5.896678 AGAGTGAGGTAGTAATTGCTCTCAT 59.103 40.000 14.96 7.24 34.42 2.90
3689 7665 6.070824 TGAGGTAGTAATTGCTCTCATGTGAA 60.071 38.462 9.84 0.00 0.00 3.18
3690 7666 6.711277 AGGTAGTAATTGCTCTCATGTGAAA 58.289 36.000 0.00 0.00 0.00 2.69
3701 7677 0.037046 CATGTGAAAGCTTTGCCCCC 60.037 55.000 18.30 1.79 0.00 5.40
3716 7692 1.839424 CCCCCTGTGTTCCTTTGATC 58.161 55.000 0.00 0.00 0.00 2.92
3731 7707 5.419788 TCCTTTGATCCATCATTGACCTTTG 59.580 40.000 0.00 0.00 36.56 2.77
3736 7712 9.473007 TTTGATCCATCATTGACCTTTGTATTA 57.527 29.630 0.00 0.00 36.56 0.98
3766 7747 6.119536 TGACACACAGGTTACTCTTTTCATT 58.880 36.000 0.00 0.00 0.00 2.57
3768 7749 5.531287 ACACACAGGTTACTCTTTTCATTCC 59.469 40.000 0.00 0.00 0.00 3.01
3774 7755 6.371825 CAGGTTACTCTTTTCATTCCCTACAC 59.628 42.308 0.00 0.00 0.00 2.90
3783 7764 3.248024 TCATTCCCTACACAGGTTGTCT 58.752 45.455 0.00 0.00 40.79 3.41
3784 7765 3.260884 TCATTCCCTACACAGGTTGTCTC 59.739 47.826 0.00 0.00 40.79 3.36
3793 7776 3.904339 ACACAGGTTGTCTCAAGGATAGT 59.096 43.478 0.00 0.00 29.79 2.12
3794 7777 4.248859 CACAGGTTGTCTCAAGGATAGTG 58.751 47.826 0.00 0.00 0.00 2.74
3798 7781 4.716784 AGGTTGTCTCAAGGATAGTGCATA 59.283 41.667 0.00 0.00 0.00 3.14
3826 7809 6.476706 TGCAAGACATTAGACATTAGACATCG 59.523 38.462 0.00 0.00 0.00 3.84
3833 7816 7.864882 ACATTAGACATTAGACATCGACATCTG 59.135 37.037 9.94 0.00 0.00 2.90
3835 7818 6.944234 AGACATTAGACATCGACATCTGTA 57.056 37.500 9.94 0.23 0.00 2.74
3836 7819 7.517614 AGACATTAGACATCGACATCTGTAT 57.482 36.000 9.94 0.40 0.00 2.29
3837 7820 7.589395 AGACATTAGACATCGACATCTGTATC 58.411 38.462 9.94 3.82 0.00 2.24
3849 7832 6.040054 TCGACATCTGTATCGGGAAAAGATTA 59.960 38.462 0.00 0.00 38.86 1.75
3850 7833 6.868864 CGACATCTGTATCGGGAAAAGATTAT 59.131 38.462 0.00 0.00 34.67 1.28
3862 7846 6.455113 CGGGAAAAGATTATGTCAAGTACACG 60.455 42.308 0.00 0.00 42.09 4.49
3865 7849 6.648725 AAAGATTATGTCAAGTACACGCTC 57.351 37.500 0.00 0.00 42.09 5.03
3871 7855 9.459640 GATTATGTCAAGTACACGCTCTATTTA 57.540 33.333 0.00 0.00 42.09 1.40
3872 7856 8.624701 TTATGTCAAGTACACGCTCTATTTAC 57.375 34.615 0.00 0.00 42.09 2.01
3873 7857 6.263516 TGTCAAGTACACGCTCTATTTACT 57.736 37.500 0.00 0.00 31.43 2.24
3874 7858 6.684686 TGTCAAGTACACGCTCTATTTACTT 58.315 36.000 0.00 0.00 34.10 2.24
3875 7859 6.584942 TGTCAAGTACACGCTCTATTTACTTG 59.415 38.462 11.78 11.78 45.79 3.16
3876 7860 5.575606 TCAAGTACACGCTCTATTTACTTGC 59.424 40.000 12.78 0.00 44.80 4.01
3877 7861 5.326200 AGTACACGCTCTATTTACTTGCT 57.674 39.130 0.00 0.00 0.00 3.91
3878 7862 5.103000 AGTACACGCTCTATTTACTTGCTG 58.897 41.667 0.00 0.00 0.00 4.41
3879 7863 2.673368 ACACGCTCTATTTACTTGCTGC 59.327 45.455 0.00 0.00 0.00 5.25
3880 7864 1.927174 ACGCTCTATTTACTTGCTGCG 59.073 47.619 0.00 0.00 46.21 5.18
3881 7865 1.927174 CGCTCTATTTACTTGCTGCGT 59.073 47.619 0.00 0.00 37.80 5.24
3882 7866 2.285256 CGCTCTATTTACTTGCTGCGTG 60.285 50.000 0.00 0.00 37.80 5.34
3883 7867 2.930040 GCTCTATTTACTTGCTGCGTGA 59.070 45.455 0.00 0.00 0.00 4.35
3884 7868 3.242123 GCTCTATTTACTTGCTGCGTGAC 60.242 47.826 0.00 0.00 0.00 3.67
3885 7869 4.177026 CTCTATTTACTTGCTGCGTGACT 58.823 43.478 0.00 0.00 0.00 3.41
3886 7870 4.174009 TCTATTTACTTGCTGCGTGACTC 58.826 43.478 0.00 0.00 0.00 3.36
3887 7871 1.136690 TTTACTTGCTGCGTGACTCG 58.863 50.000 0.00 0.00 43.12 4.18
3888 7872 0.312729 TTACTTGCTGCGTGACTCGA 59.687 50.000 0.22 0.00 42.86 4.04
3889 7873 0.312729 TACTTGCTGCGTGACTCGAA 59.687 50.000 0.22 0.00 42.86 3.71
3890 7874 0.529773 ACTTGCTGCGTGACTCGAAA 60.530 50.000 0.22 0.00 42.86 3.46
3891 7875 0.162507 CTTGCTGCGTGACTCGAAAG 59.837 55.000 0.22 0.00 42.86 2.62
3892 7876 0.529773 TTGCTGCGTGACTCGAAAGT 60.530 50.000 0.22 0.00 42.86 2.66
3893 7877 0.529773 TGCTGCGTGACTCGAAAGTT 60.530 50.000 0.22 0.00 42.86 2.66
3894 7878 0.582005 GCTGCGTGACTCGAAAGTTT 59.418 50.000 0.22 0.00 42.86 2.66
3895 7879 1.397315 GCTGCGTGACTCGAAAGTTTC 60.397 52.381 5.47 5.47 42.86 2.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 5.182001 GTCTTAGGCTCTTTGCAAATTCTGA 59.818 40.000 13.23 5.51 45.15 3.27
16 17 4.222810 TGAGTATGTCTTAGGCTCTTTGCA 59.777 41.667 0.00 0.00 45.15 4.08
168 175 7.413328 GCATTTTTCCAAGCAATTTATGACCTC 60.413 37.037 0.00 0.00 0.00 3.85
378 395 1.280998 GAAACCAATTCCGGGAGAGGA 59.719 52.381 10.15 0.00 38.79 3.71
530 555 0.675633 GGAAGCAAAGCAAAGCTGGA 59.324 50.000 0.00 0.00 41.70 3.86
578 610 4.339872 AGAGAGAGGCATAGCAAATCTG 57.660 45.455 0.00 0.00 0.00 2.90
640 686 5.984926 CACATGTTTACCAGTCAAGCAATTT 59.015 36.000 0.00 0.00 0.00 1.82
796 4253 2.159653 CGGTACAAATCACAGCTTCAGC 60.160 50.000 0.00 0.00 42.49 4.26
797 4254 3.325870 TCGGTACAAATCACAGCTTCAG 58.674 45.455 0.00 0.00 0.00 3.02
798 4255 3.244078 ACTCGGTACAAATCACAGCTTCA 60.244 43.478 0.00 0.00 0.00 3.02
799 4256 3.326747 ACTCGGTACAAATCACAGCTTC 58.673 45.455 0.00 0.00 0.00 3.86
800 4257 3.402628 ACTCGGTACAAATCACAGCTT 57.597 42.857 0.00 0.00 0.00 3.74
801 4258 3.402628 AACTCGGTACAAATCACAGCT 57.597 42.857 0.00 0.00 0.00 4.24
802 4259 7.223971 TCAATATAACTCGGTACAAATCACAGC 59.776 37.037 0.00 0.00 0.00 4.40
803 4260 8.642908 TCAATATAACTCGGTACAAATCACAG 57.357 34.615 0.00 0.00 0.00 3.66
807 4264 7.924412 TGGACTCAATATAACTCGGTACAAATC 59.076 37.037 0.00 0.00 0.00 2.17
808 4265 7.709613 GTGGACTCAATATAACTCGGTACAAAT 59.290 37.037 0.00 0.00 0.00 2.32
809 4266 7.037438 GTGGACTCAATATAACTCGGTACAAA 58.963 38.462 0.00 0.00 0.00 2.83
811 4268 5.068198 GGTGGACTCAATATAACTCGGTACA 59.932 44.000 0.00 0.00 0.00 2.90
812 4269 5.508657 GGGTGGACTCAATATAACTCGGTAC 60.509 48.000 0.00 0.00 0.00 3.34
813 4270 4.586001 GGGTGGACTCAATATAACTCGGTA 59.414 45.833 0.00 0.00 0.00 4.02
814 4271 3.387050 GGGTGGACTCAATATAACTCGGT 59.613 47.826 0.00 0.00 0.00 4.69
815 4272 3.386726 TGGGTGGACTCAATATAACTCGG 59.613 47.826 0.00 0.00 0.00 4.63
816 4273 4.665833 TGGGTGGACTCAATATAACTCG 57.334 45.455 0.00 0.00 0.00 4.18
817 4274 5.230942 CGATGGGTGGACTCAATATAACTC 58.769 45.833 0.00 0.00 0.00 3.01
818 4275 4.040461 CCGATGGGTGGACTCAATATAACT 59.960 45.833 0.00 0.00 0.00 2.24
819 4276 4.315803 CCGATGGGTGGACTCAATATAAC 58.684 47.826 0.00 0.00 0.00 1.89
820 4277 3.244422 GCCGATGGGTGGACTCAATATAA 60.244 47.826 0.00 0.00 34.97 0.98
821 4278 2.301870 GCCGATGGGTGGACTCAATATA 59.698 50.000 0.00 0.00 34.97 0.86
822 4279 1.072331 GCCGATGGGTGGACTCAATAT 59.928 52.381 0.00 0.00 34.97 1.28
823 4280 0.468226 GCCGATGGGTGGACTCAATA 59.532 55.000 0.00 0.00 34.97 1.90
824 4281 1.224592 GCCGATGGGTGGACTCAAT 59.775 57.895 0.00 0.00 34.97 2.57
825 4282 2.668632 GCCGATGGGTGGACTCAA 59.331 61.111 0.00 0.00 34.97 3.02
826 4283 3.399181 GGCCGATGGGTGGACTCA 61.399 66.667 0.00 0.00 34.97 3.41
827 4284 4.176752 GGGCCGATGGGTGGACTC 62.177 72.222 0.00 0.00 33.80 3.36
836 4293 4.758251 TCAGTGCACGGGCCGATG 62.758 66.667 35.78 26.12 40.13 3.84
837 4294 4.457496 CTCAGTGCACGGGCCGAT 62.457 66.667 35.78 14.57 40.13 4.18
841 4298 4.314440 TGGACTCAGTGCACGGGC 62.314 66.667 17.13 0.34 41.68 6.13
842 4299 2.357517 GTGGACTCAGTGCACGGG 60.358 66.667 14.29 11.69 44.01 5.28
920 4377 3.069872 GGCTGTGTGAGATGAGATGAGAT 59.930 47.826 0.00 0.00 0.00 2.75
921 4378 2.429971 GGCTGTGTGAGATGAGATGAGA 59.570 50.000 0.00 0.00 0.00 3.27
922 4379 2.167900 TGGCTGTGTGAGATGAGATGAG 59.832 50.000 0.00 0.00 0.00 2.90
923 4380 2.167900 CTGGCTGTGTGAGATGAGATGA 59.832 50.000 0.00 0.00 0.00 2.92
924 4381 2.552031 CTGGCTGTGTGAGATGAGATG 58.448 52.381 0.00 0.00 0.00 2.90
946 4403 0.179045 GGTTCGGATCTGGGATGTGG 60.179 60.000 0.62 0.00 0.00 4.17
1050 4528 4.504916 CAGGAGCGCGTCTGGAGG 62.505 72.222 20.29 0.74 0.00 4.30
1212 4943 2.099831 CGGTACTGCGACTCGACC 59.900 66.667 1.63 0.00 0.00 4.79
1245 4976 1.893137 AGCACGTAGATGGAGTTGACA 59.107 47.619 0.00 0.00 0.00 3.58
1637 5368 2.363018 CGGCAGAGAGGGTCTCCA 60.363 66.667 0.17 0.00 44.42 3.86
1701 5432 4.115199 GGCGGCTCATCCCCAGTT 62.115 66.667 0.00 0.00 0.00 3.16
1773 5504 0.460987 CCTCCTCTGGCTTGCTAACG 60.461 60.000 0.00 0.00 0.00 3.18
1794 5525 0.878523 TCTTGAACGCACCGACCAAG 60.879 55.000 13.18 13.18 39.19 3.61
1893 5624 2.969821 ATGTTGGTTTAGTGGCCTCA 57.030 45.000 3.32 0.00 0.00 3.86
1920 5651 0.391130 CGCCCTCAAATCCTTCGACA 60.391 55.000 0.00 0.00 0.00 4.35
1923 5654 0.108138 AGTCGCCCTCAAATCCTTCG 60.108 55.000 0.00 0.00 0.00 3.79
1926 5657 1.417890 CCATAGTCGCCCTCAAATCCT 59.582 52.381 0.00 0.00 0.00 3.24
1938 5669 4.094887 CCAAACTCAATTCCACCATAGTCG 59.905 45.833 0.00 0.00 0.00 4.18
1944 5675 3.566322 CGTTACCAAACTCAATTCCACCA 59.434 43.478 0.00 0.00 33.15 4.17
1965 5696 1.018226 CAGCCAGTGAAGCTTCCTCG 61.018 60.000 23.42 13.26 38.95 4.63
2079 5810 4.610333 TGGCTAGAATCTCAAGACCAGTA 58.390 43.478 0.00 0.00 0.00 2.74
2175 6027 0.973632 ACAACTCAGGCACGGTCATA 59.026 50.000 0.00 0.00 0.00 2.15
2445 6405 0.523519 GCTTTGGCAGGAAGCTGTAC 59.476 55.000 15.01 0.00 44.63 2.90
2460 6420 1.492993 GGGGGAGAGGTGAGTGCTTT 61.493 60.000 0.00 0.00 0.00 3.51
2523 6483 2.658802 CGACGCATAGTGTATCATCAGC 59.341 50.000 0.00 0.00 0.00 4.26
2550 6510 2.598394 AGTGGCTGCGGCAACATT 60.598 55.556 26.79 4.21 44.47 2.71
2607 6567 2.096013 GGGCGAAACATTAAGCAGAGTC 59.904 50.000 0.00 0.00 0.00 3.36
2754 6714 3.221771 CTTCACCATTCCAACAACCTCA 58.778 45.455 0.00 0.00 0.00 3.86
2921 6881 6.381481 ACTGAAAAAGGGGTAAAGTAAACG 57.619 37.500 0.00 0.00 0.00 3.60
3048 7008 7.877003 TCCATTACGAAACTTGCAAAAGATTA 58.123 30.769 0.00 0.00 0.00 1.75
3066 7026 7.502120 ACATGTTCTTCTATGCATCCATTAC 57.498 36.000 0.19 0.00 32.85 1.89
3069 7029 6.835174 AGTACATGTTCTTCTATGCATCCAT 58.165 36.000 2.30 0.00 35.44 3.41
3070 7030 6.239217 AGTACATGTTCTTCTATGCATCCA 57.761 37.500 2.30 0.00 0.00 3.41
3071 7031 6.989169 AGAAGTACATGTTCTTCTATGCATCC 59.011 38.462 33.69 13.73 45.43 3.51
3072 7032 7.518052 GCAGAAGTACATGTTCTTCTATGCATC 60.518 40.741 33.89 20.16 45.49 3.91
3073 7033 6.259608 GCAGAAGTACATGTTCTTCTATGCAT 59.740 38.462 33.89 17.60 45.49 3.96
3074 7034 5.582269 GCAGAAGTACATGTTCTTCTATGCA 59.418 40.000 33.89 0.77 45.49 3.96
3075 7035 5.814705 AGCAGAAGTACATGTTCTTCTATGC 59.185 40.000 33.89 32.24 45.49 3.14
3076 7036 7.038048 TGAGCAGAAGTACATGTTCTTCTATG 58.962 38.462 33.89 26.96 45.49 2.23
3077 7037 7.175347 TGAGCAGAAGTACATGTTCTTCTAT 57.825 36.000 33.89 27.53 45.49 1.98
3078 7038 6.590234 TGAGCAGAAGTACATGTTCTTCTA 57.410 37.500 33.89 22.21 45.49 2.10
3080 7040 6.593382 AGAATGAGCAGAAGTACATGTTCTTC 59.407 38.462 28.31 28.31 39.93 2.87
3081 7041 6.370994 CAGAATGAGCAGAAGTACATGTTCTT 59.629 38.462 16.61 16.61 39.69 2.52
3082 7042 5.873712 CAGAATGAGCAGAAGTACATGTTCT 59.126 40.000 2.30 0.00 39.69 3.01
3083 7043 5.064452 CCAGAATGAGCAGAAGTACATGTTC 59.936 44.000 2.30 0.00 39.69 3.18
3084 7044 4.940046 CCAGAATGAGCAGAAGTACATGTT 59.060 41.667 2.30 0.00 39.69 2.71
3085 7045 4.223700 TCCAGAATGAGCAGAAGTACATGT 59.776 41.667 2.69 2.69 39.69 3.21
3086 7046 4.763073 TCCAGAATGAGCAGAAGTACATG 58.237 43.478 0.00 0.00 39.69 3.21
3087 7047 5.366460 CATCCAGAATGAGCAGAAGTACAT 58.634 41.667 0.00 0.00 39.69 2.29
3088 7048 4.383444 CCATCCAGAATGAGCAGAAGTACA 60.383 45.833 0.00 0.00 39.69 2.90
3094 7054 3.009363 TGTTTCCATCCAGAATGAGCAGA 59.991 43.478 0.00 0.00 39.69 4.26
3104 7068 6.391227 ACTACTGTTTTTGTTTCCATCCAG 57.609 37.500 0.00 0.00 0.00 3.86
3111 7075 7.894013 GTAGCAGAACTACTGTTTTTGTTTC 57.106 36.000 0.00 0.00 46.65 2.78
3123 7088 5.307926 ACTAAAGGTCGTAGCAGAACTAC 57.692 43.478 0.00 0.00 46.70 2.73
3126 7091 8.868635 ATAATTACTAAAGGTCGTAGCAGAAC 57.131 34.615 0.00 0.00 0.00 3.01
3150 7116 7.491681 AGTAATTCTGGATGGAGGGAGTATAT 58.508 38.462 0.00 0.00 0.00 0.86
3151 7117 6.875469 AGTAATTCTGGATGGAGGGAGTATA 58.125 40.000 0.00 0.00 0.00 1.47
3152 7118 5.731924 AGTAATTCTGGATGGAGGGAGTAT 58.268 41.667 0.00 0.00 0.00 2.12
3153 7119 5.157770 AGTAATTCTGGATGGAGGGAGTA 57.842 43.478 0.00 0.00 0.00 2.59
3154 7120 4.014273 AGTAATTCTGGATGGAGGGAGT 57.986 45.455 0.00 0.00 0.00 3.85
3155 7121 4.164988 ACAAGTAATTCTGGATGGAGGGAG 59.835 45.833 0.00 0.00 0.00 4.30
3156 7122 4.111577 ACAAGTAATTCTGGATGGAGGGA 58.888 43.478 0.00 0.00 0.00 4.20
3157 7123 4.455606 GACAAGTAATTCTGGATGGAGGG 58.544 47.826 0.00 0.00 0.00 4.30
3158 7124 4.122776 CGACAAGTAATTCTGGATGGAGG 58.877 47.826 0.00 0.00 0.00 4.30
3159 7125 3.557595 GCGACAAGTAATTCTGGATGGAG 59.442 47.826 0.00 0.00 0.00 3.86
3160 7126 3.055458 TGCGACAAGTAATTCTGGATGGA 60.055 43.478 0.00 0.00 0.00 3.41
3161 7127 3.270027 TGCGACAAGTAATTCTGGATGG 58.730 45.455 0.00 0.00 0.00 3.51
3162 7128 6.603237 TTATGCGACAAGTAATTCTGGATG 57.397 37.500 0.00 0.00 0.00 3.51
3163 7129 6.260936 CCTTTATGCGACAAGTAATTCTGGAT 59.739 38.462 0.00 0.00 0.00 3.41
3164 7130 5.584649 CCTTTATGCGACAAGTAATTCTGGA 59.415 40.000 0.00 0.00 0.00 3.86
3165 7131 5.220854 CCCTTTATGCGACAAGTAATTCTGG 60.221 44.000 0.00 0.00 0.00 3.86
3166 7132 5.584649 TCCCTTTATGCGACAAGTAATTCTG 59.415 40.000 0.00 0.00 0.00 3.02
3167 7133 5.741011 TCCCTTTATGCGACAAGTAATTCT 58.259 37.500 0.00 0.00 0.00 2.40
3168 7134 6.619801 ATCCCTTTATGCGACAAGTAATTC 57.380 37.500 0.00 0.00 0.00 2.17
3169 7135 8.514330 TTTATCCCTTTATGCGACAAGTAATT 57.486 30.769 0.00 0.00 0.00 1.40
3170 7136 8.403236 GTTTTATCCCTTTATGCGACAAGTAAT 58.597 33.333 0.00 0.00 0.00 1.89
3171 7137 7.148205 GGTTTTATCCCTTTATGCGACAAGTAA 60.148 37.037 0.00 0.00 0.00 2.24
3172 7138 6.316890 GGTTTTATCCCTTTATGCGACAAGTA 59.683 38.462 0.00 0.00 0.00 2.24
3173 7139 5.124936 GGTTTTATCCCTTTATGCGACAAGT 59.875 40.000 0.00 0.00 0.00 3.16
3174 7140 5.357032 AGGTTTTATCCCTTTATGCGACAAG 59.643 40.000 0.00 0.00 0.00 3.16
3175 7141 5.124776 CAGGTTTTATCCCTTTATGCGACAA 59.875 40.000 0.00 0.00 0.00 3.18
3176 7142 4.638421 CAGGTTTTATCCCTTTATGCGACA 59.362 41.667 0.00 0.00 0.00 4.35
3177 7143 4.879545 TCAGGTTTTATCCCTTTATGCGAC 59.120 41.667 0.00 0.00 0.00 5.19
3178 7144 5.105567 TCAGGTTTTATCCCTTTATGCGA 57.894 39.130 0.00 0.00 0.00 5.10
3179 7145 5.299279 ACATCAGGTTTTATCCCTTTATGCG 59.701 40.000 0.00 0.00 30.84 4.73
3180 7146 6.715347 ACATCAGGTTTTATCCCTTTATGC 57.285 37.500 0.00 0.00 30.84 3.14
3181 7147 9.799106 AGATACATCAGGTTTTATCCCTTTATG 57.201 33.333 0.00 0.00 32.66 1.90
3184 7150 9.004231 ACTAGATACATCAGGTTTTATCCCTTT 57.996 33.333 0.00 0.00 0.00 3.11
3185 7151 8.568617 ACTAGATACATCAGGTTTTATCCCTT 57.431 34.615 0.00 0.00 0.00 3.95
3186 7152 9.091220 GTACTAGATACATCAGGTTTTATCCCT 57.909 37.037 0.00 0.00 33.54 4.20
3187 7153 9.091220 AGTACTAGATACATCAGGTTTTATCCC 57.909 37.037 0.00 0.00 36.09 3.85
3217 7183 8.744652 CGGAGAAAAGGATGTATCTAGATGTAT 58.255 37.037 15.79 9.11 0.00 2.29
3218 7184 7.942894 TCGGAGAAAAGGATGTATCTAGATGTA 59.057 37.037 15.79 4.44 0.00 2.29
3219 7185 6.778069 TCGGAGAAAAGGATGTATCTAGATGT 59.222 38.462 15.79 1.25 0.00 3.06
3220 7186 7.087639 GTCGGAGAAAAGGATGTATCTAGATG 58.912 42.308 15.79 0.00 39.69 2.90
3221 7187 6.778069 TGTCGGAGAAAAGGATGTATCTAGAT 59.222 38.462 10.73 10.73 39.69 1.98
3222 7188 6.127101 TGTCGGAGAAAAGGATGTATCTAGA 58.873 40.000 0.00 0.00 39.69 2.43
3223 7189 6.392625 TGTCGGAGAAAAGGATGTATCTAG 57.607 41.667 0.00 0.00 39.69 2.43
3224 7190 6.785337 TTGTCGGAGAAAAGGATGTATCTA 57.215 37.500 0.00 0.00 39.69 1.98
3225 7191 5.677319 TTGTCGGAGAAAAGGATGTATCT 57.323 39.130 0.00 0.00 39.69 1.98
3235 7201 3.119245 CGGGAGATACTTGTCGGAGAAAA 60.119 47.826 0.00 0.00 39.69 2.29
3236 7202 2.426024 CGGGAGATACTTGTCGGAGAAA 59.574 50.000 0.00 0.00 39.69 2.52
3237 7203 2.022195 CGGGAGATACTTGTCGGAGAA 58.978 52.381 0.00 0.00 39.69 2.87
3238 7204 1.211212 TCGGGAGATACTTGTCGGAGA 59.789 52.381 0.00 0.00 0.00 3.71
3239 7205 1.334243 GTCGGGAGATACTTGTCGGAG 59.666 57.143 0.00 0.00 43.27 4.63
3240 7206 1.386533 GTCGGGAGATACTTGTCGGA 58.613 55.000 0.00 0.00 43.27 4.55
3241 7207 0.029035 CGTCGGGAGATACTTGTCGG 59.971 60.000 0.00 0.00 43.27 4.79
3242 7208 0.029035 CCGTCGGGAGATACTTGTCG 59.971 60.000 2.34 0.00 43.27 4.35
3243 7209 1.386533 TCCGTCGGGAGATACTTGTC 58.613 55.000 12.29 0.00 43.27 3.18
3244 7210 3.583054 TCCGTCGGGAGATACTTGT 57.417 52.632 12.29 0.00 43.27 3.16
3254 7220 0.754217 TGAATACTCCCTCCGTCGGG 60.754 60.000 12.29 1.87 46.13 5.14
3255 7221 0.384669 GTGAATACTCCCTCCGTCGG 59.615 60.000 4.39 4.39 0.00 4.79
3256 7222 1.390565 AGTGAATACTCCCTCCGTCG 58.609 55.000 0.00 0.00 28.79 5.12
3257 7223 4.583489 TCAATAGTGAATACTCCCTCCGTC 59.417 45.833 0.00 0.00 38.36 4.79
3258 7224 4.543689 TCAATAGTGAATACTCCCTCCGT 58.456 43.478 0.00 0.00 38.36 4.69
3259 7225 5.531122 TTCAATAGTGAATACTCCCTCCG 57.469 43.478 0.56 0.00 38.88 4.63
3260 7226 6.542735 GGTTTTCAATAGTGAATACTCCCTCC 59.457 42.308 20.53 5.07 43.29 4.30
3261 7227 7.110155 TGGTTTTCAATAGTGAATACTCCCTC 58.890 38.462 20.53 8.72 43.29 4.30
3262 7228 7.027874 TGGTTTTCAATAGTGAATACTCCCT 57.972 36.000 20.53 0.00 43.29 4.20
3263 7229 7.556275 TGATGGTTTTCAATAGTGAATACTCCC 59.444 37.037 20.53 9.43 43.29 4.30
3264 7230 8.506168 TGATGGTTTTCAATAGTGAATACTCC 57.494 34.615 20.53 14.12 43.29 3.85
3266 7232 9.685276 TGATGATGGTTTTCAATAGTGAATACT 57.315 29.630 20.53 7.07 43.29 2.12
3267 7233 9.722056 GTGATGATGGTTTTCAATAGTGAATAC 57.278 33.333 15.35 15.35 43.29 1.89
3268 7234 8.902806 GGTGATGATGGTTTTCAATAGTGAATA 58.097 33.333 6.42 0.00 43.29 1.75
3343 7317 4.506758 ACAAATAATCTGGGCATTTGTGC 58.493 39.130 10.24 0.00 46.04 4.57
3349 7323 4.023291 ACCGAAACAAATAATCTGGGCAT 58.977 39.130 0.00 0.00 0.00 4.40
3350 7324 3.192422 CACCGAAACAAATAATCTGGGCA 59.808 43.478 0.00 0.00 0.00 5.36
3351 7325 3.192633 ACACCGAAACAAATAATCTGGGC 59.807 43.478 0.00 0.00 0.00 5.36
3352 7326 6.317642 TGATACACCGAAACAAATAATCTGGG 59.682 38.462 0.00 0.00 0.00 4.45
3353 7327 7.315247 TGATACACCGAAACAAATAATCTGG 57.685 36.000 0.00 0.00 0.00 3.86
3354 7328 6.907212 GCTGATACACCGAAACAAATAATCTG 59.093 38.462 0.00 0.00 0.00 2.90
3355 7329 6.597672 TGCTGATACACCGAAACAAATAATCT 59.402 34.615 0.00 0.00 0.00 2.40
3356 7330 6.781138 TGCTGATACACCGAAACAAATAATC 58.219 36.000 0.00 0.00 0.00 1.75
3358 7332 6.456315 CGATGCTGATACACCGAAACAAATAA 60.456 38.462 0.00 0.00 0.00 1.40
3359 7333 5.006261 CGATGCTGATACACCGAAACAAATA 59.994 40.000 0.00 0.00 0.00 1.40
3360 7334 4.201812 CGATGCTGATACACCGAAACAAAT 60.202 41.667 0.00 0.00 0.00 2.32
3361 7335 3.124466 CGATGCTGATACACCGAAACAAA 59.876 43.478 0.00 0.00 0.00 2.83
3362 7336 2.670905 CGATGCTGATACACCGAAACAA 59.329 45.455 0.00 0.00 0.00 2.83
3363 7337 2.267426 CGATGCTGATACACCGAAACA 58.733 47.619 0.00 0.00 0.00 2.83
3364 7338 1.593006 CCGATGCTGATACACCGAAAC 59.407 52.381 0.00 0.00 0.00 2.78
3365 7339 1.206132 ACCGATGCTGATACACCGAAA 59.794 47.619 0.00 0.00 0.00 3.46
3366 7340 0.821517 ACCGATGCTGATACACCGAA 59.178 50.000 0.00 0.00 0.00 4.30
3367 7341 0.821517 AACCGATGCTGATACACCGA 59.178 50.000 0.00 0.00 0.00 4.69
3368 7342 1.593006 GAAACCGATGCTGATACACCG 59.407 52.381 0.00 0.00 0.00 4.94
3369 7343 2.627945 TGAAACCGATGCTGATACACC 58.372 47.619 0.00 0.00 0.00 4.16
3370 7344 4.025396 CAGATGAAACCGATGCTGATACAC 60.025 45.833 0.00 0.00 0.00 2.90
3371 7345 4.122046 CAGATGAAACCGATGCTGATACA 58.878 43.478 0.00 0.00 0.00 2.29
3372 7346 3.496130 CCAGATGAAACCGATGCTGATAC 59.504 47.826 0.00 0.00 0.00 2.24
3373 7347 3.134623 ACCAGATGAAACCGATGCTGATA 59.865 43.478 0.00 0.00 0.00 2.15
3374 7348 2.092753 ACCAGATGAAACCGATGCTGAT 60.093 45.455 0.00 0.00 0.00 2.90
3375 7349 1.278985 ACCAGATGAAACCGATGCTGA 59.721 47.619 0.00 0.00 0.00 4.26
3376 7350 1.399440 CACCAGATGAAACCGATGCTG 59.601 52.381 0.00 0.00 0.00 4.41
3377 7351 1.003580 ACACCAGATGAAACCGATGCT 59.996 47.619 0.00 0.00 0.00 3.79
3378 7352 1.131126 CACACCAGATGAAACCGATGC 59.869 52.381 0.00 0.00 0.00 3.91
3379 7353 2.698803 TCACACCAGATGAAACCGATG 58.301 47.619 0.00 0.00 0.00 3.84
3380 7354 3.535561 GATCACACCAGATGAAACCGAT 58.464 45.455 0.00 0.00 0.00 4.18
3381 7355 2.673893 CGATCACACCAGATGAAACCGA 60.674 50.000 0.00 0.00 0.00 4.69
3382 7356 1.660607 CGATCACACCAGATGAAACCG 59.339 52.381 0.00 0.00 0.00 4.44
3383 7357 2.009774 CCGATCACACCAGATGAAACC 58.990 52.381 0.00 0.00 0.00 3.27
3384 7358 1.398390 GCCGATCACACCAGATGAAAC 59.602 52.381 0.00 0.00 0.00 2.78
3385 7359 1.003003 TGCCGATCACACCAGATGAAA 59.997 47.619 0.00 0.00 0.00 2.69
3386 7360 0.612744 TGCCGATCACACCAGATGAA 59.387 50.000 0.00 0.00 0.00 2.57
3387 7361 0.176449 CTGCCGATCACACCAGATGA 59.824 55.000 0.00 0.00 0.00 2.92
3388 7362 1.434622 GCTGCCGATCACACCAGATG 61.435 60.000 0.00 0.00 0.00 2.90
3389 7363 1.153289 GCTGCCGATCACACCAGAT 60.153 57.895 0.00 0.00 0.00 2.90
3390 7364 2.265739 GCTGCCGATCACACCAGA 59.734 61.111 0.00 0.00 0.00 3.86
3391 7365 1.960040 TAGGCTGCCGATCACACCAG 61.960 60.000 13.96 0.00 0.00 4.00
3392 7366 1.549243 TTAGGCTGCCGATCACACCA 61.549 55.000 13.96 0.00 0.00 4.17
3393 7367 0.392461 TTTAGGCTGCCGATCACACC 60.392 55.000 13.96 0.00 0.00 4.16
3394 7368 0.727398 GTTTAGGCTGCCGATCACAC 59.273 55.000 13.96 2.05 0.00 3.82
3395 7369 0.613260 AGTTTAGGCTGCCGATCACA 59.387 50.000 13.96 0.00 0.00 3.58
3396 7370 2.596904 TAGTTTAGGCTGCCGATCAC 57.403 50.000 13.96 8.18 0.00 3.06
3397 7371 3.620427 TTTAGTTTAGGCTGCCGATCA 57.380 42.857 13.96 0.00 0.00 2.92
3398 7372 5.539048 TCTATTTAGTTTAGGCTGCCGATC 58.461 41.667 13.96 5.62 0.00 3.69
3399 7373 5.304614 TCTCTATTTAGTTTAGGCTGCCGAT 59.695 40.000 13.96 0.00 0.00 4.18
3400 7374 4.647853 TCTCTATTTAGTTTAGGCTGCCGA 59.352 41.667 13.96 4.89 0.00 5.54
3401 7375 4.945246 TCTCTATTTAGTTTAGGCTGCCG 58.055 43.478 13.96 0.00 0.00 5.69
3402 7376 6.992715 TGATTCTCTATTTAGTTTAGGCTGCC 59.007 38.462 11.65 11.65 0.00 4.85
3403 7377 7.172361 CCTGATTCTCTATTTAGTTTAGGCTGC 59.828 40.741 0.00 0.00 0.00 5.25
3404 7378 8.424918 TCCTGATTCTCTATTTAGTTTAGGCTG 58.575 37.037 0.00 0.00 0.00 4.85
3405 7379 8.554490 TCCTGATTCTCTATTTAGTTTAGGCT 57.446 34.615 0.00 0.00 0.00 4.58
3406 7380 8.425703 ACTCCTGATTCTCTATTTAGTTTAGGC 58.574 37.037 0.00 0.00 0.00 3.93
3412 7386 9.702253 TGAAGTACTCCTGATTCTCTATTTAGT 57.298 33.333 0.00 0.00 0.00 2.24
3414 7388 9.702253 ACTGAAGTACTCCTGATTCTCTATTTA 57.298 33.333 0.00 0.00 0.00 1.40
3415 7389 8.602472 ACTGAAGTACTCCTGATTCTCTATTT 57.398 34.615 0.00 0.00 0.00 1.40
3416 7390 8.474025 CAACTGAAGTACTCCTGATTCTCTATT 58.526 37.037 0.00 0.00 0.00 1.73
3417 7391 7.069331 CCAACTGAAGTACTCCTGATTCTCTAT 59.931 40.741 0.00 0.00 0.00 1.98
3418 7392 6.378564 CCAACTGAAGTACTCCTGATTCTCTA 59.621 42.308 0.00 0.00 0.00 2.43
3419 7393 5.186797 CCAACTGAAGTACTCCTGATTCTCT 59.813 44.000 0.00 0.00 0.00 3.10
3420 7394 5.415221 CCAACTGAAGTACTCCTGATTCTC 58.585 45.833 0.00 0.00 0.00 2.87
3421 7395 4.323104 GCCAACTGAAGTACTCCTGATTCT 60.323 45.833 0.00 0.00 0.00 2.40
3422 7396 3.935828 GCCAACTGAAGTACTCCTGATTC 59.064 47.826 0.00 0.00 0.00 2.52
3423 7397 3.327757 TGCCAACTGAAGTACTCCTGATT 59.672 43.478 0.00 0.00 0.00 2.57
3424 7398 2.906389 TGCCAACTGAAGTACTCCTGAT 59.094 45.455 0.00 0.00 0.00 2.90
3425 7399 2.325484 TGCCAACTGAAGTACTCCTGA 58.675 47.619 0.00 0.00 0.00 3.86
3426 7400 2.839486 TGCCAACTGAAGTACTCCTG 57.161 50.000 0.00 0.00 0.00 3.86
3427 7401 3.679389 CAATGCCAACTGAAGTACTCCT 58.321 45.455 0.00 0.00 0.00 3.69
3428 7402 2.162408 GCAATGCCAACTGAAGTACTCC 59.838 50.000 0.00 0.00 0.00 3.85
3429 7403 2.813754 TGCAATGCCAACTGAAGTACTC 59.186 45.455 1.53 0.00 0.00 2.59
3430 7404 2.862541 TGCAATGCCAACTGAAGTACT 58.137 42.857 1.53 0.00 0.00 2.73
3431 7405 3.308530 GTTGCAATGCCAACTGAAGTAC 58.691 45.455 0.59 0.00 41.36 2.73
3432 7406 3.641437 GTTGCAATGCCAACTGAAGTA 57.359 42.857 0.59 0.00 41.36 2.24
3433 7407 2.514205 GTTGCAATGCCAACTGAAGT 57.486 45.000 0.59 0.00 41.36 3.01
3449 7423 6.651755 ACTTGAAAGCAAACAAATCAGTTG 57.348 33.333 0.00 0.00 43.43 3.16
3452 7426 6.890663 TCAACTTGAAAGCAAACAAATCAG 57.109 33.333 0.00 0.00 32.73 2.90
3478 7452 1.035139 CAGGACCAAACTTGCAAGCT 58.965 50.000 26.27 11.98 0.00 3.74
3479 7453 1.000938 CTCAGGACCAAACTTGCAAGC 60.001 52.381 26.27 8.60 0.00 4.01
3487 7461 4.072131 TGCTAAACATCTCAGGACCAAAC 58.928 43.478 0.00 0.00 0.00 2.93
3494 7468 9.512588 AAAAGGATATATGCTAAACATCTCAGG 57.487 33.333 7.22 0.00 40.38 3.86
3554 7528 9.612620 GTTACCTATCAACAGAAAGTGAAAATG 57.387 33.333 0.00 0.00 0.00 2.32
3555 7529 9.574516 AGTTACCTATCAACAGAAAGTGAAAAT 57.425 29.630 0.00 0.00 0.00 1.82
3560 7535 7.155328 AGTCAGTTACCTATCAACAGAAAGTG 58.845 38.462 0.00 0.00 0.00 3.16
3565 7540 9.031537 TGAATAAGTCAGTTACCTATCAACAGA 57.968 33.333 0.00 0.00 0.00 3.41
3584 7560 6.037172 CCATAACCAAAGTCTCCGTGAATAAG 59.963 42.308 0.00 0.00 0.00 1.73
3643 7619 8.630037 ACCTCACTCTTTAATTTGGTTAAACAG 58.370 33.333 0.00 0.00 37.35 3.16
3656 7632 8.135382 AGAGCAATTACTACCTCACTCTTTAA 57.865 34.615 0.00 0.00 29.18 1.52
3657 7633 7.396339 TGAGAGCAATTACTACCTCACTCTTTA 59.604 37.037 0.00 0.00 33.59 1.85
3658 7634 6.211584 TGAGAGCAATTACTACCTCACTCTTT 59.788 38.462 0.00 0.00 33.59 2.52
3659 7635 5.717178 TGAGAGCAATTACTACCTCACTCTT 59.283 40.000 0.00 0.00 33.59 2.85
3667 7643 6.985188 TTTCACATGAGAGCAATTACTACC 57.015 37.500 0.00 0.00 0.00 3.18
3681 7657 0.968405 GGGGCAAAGCTTTCACATGA 59.032 50.000 9.23 0.00 0.00 3.07
3684 7660 1.114722 CAGGGGGCAAAGCTTTCACA 61.115 55.000 9.23 0.00 0.00 3.58
3689 7665 1.075301 AACACAGGGGGCAAAGCTT 60.075 52.632 0.00 0.00 0.00 3.74
3690 7666 1.531602 GAACACAGGGGGCAAAGCT 60.532 57.895 0.00 0.00 0.00 3.74
3701 7677 5.416639 TCAATGATGGATCAAAGGAACACAG 59.583 40.000 0.00 0.00 40.69 3.66
3736 7712 8.691661 AAAGAGTAACCTGTGTGTCATAAAAT 57.308 30.769 0.00 0.00 0.00 1.82
3774 7755 3.265791 GCACTATCCTTGAGACAACCTG 58.734 50.000 0.00 0.00 0.00 4.00
3783 7764 4.961438 TGCAGATATGCACTATCCTTGA 57.039 40.909 11.76 0.00 40.23 3.02
3784 7765 5.178996 GTCTTGCAGATATGCACTATCCTTG 59.821 44.000 15.91 0.00 45.32 3.61
3793 7776 5.673514 TGTCTAATGTCTTGCAGATATGCA 58.326 37.500 11.76 11.76 43.81 3.96
3794 7777 6.798315 ATGTCTAATGTCTTGCAGATATGC 57.202 37.500 5.09 5.09 0.00 3.14
3798 7781 7.559486 TGTCTAATGTCTAATGTCTTGCAGAT 58.441 34.615 0.00 0.00 0.00 2.90
3803 7786 7.702348 TGTCGATGTCTAATGTCTAATGTCTTG 59.298 37.037 0.00 0.00 0.00 3.02
3805 7788 7.334844 TGTCGATGTCTAATGTCTAATGTCT 57.665 36.000 0.00 0.00 0.00 3.41
3806 7789 8.079203 AGATGTCGATGTCTAATGTCTAATGTC 58.921 37.037 1.16 0.00 0.00 3.06
3807 7790 7.864882 CAGATGTCGATGTCTAATGTCTAATGT 59.135 37.037 2.68 0.00 0.00 2.71
3808 7791 7.864882 ACAGATGTCGATGTCTAATGTCTAATG 59.135 37.037 2.68 0.00 0.00 1.90
3809 7792 7.946207 ACAGATGTCGATGTCTAATGTCTAAT 58.054 34.615 2.68 0.00 0.00 1.73
3810 7793 7.334844 ACAGATGTCGATGTCTAATGTCTAA 57.665 36.000 2.68 0.00 0.00 2.10
3811 7794 6.944234 ACAGATGTCGATGTCTAATGTCTA 57.056 37.500 2.68 0.00 0.00 2.59
3826 7809 7.657761 ACATAATCTTTTCCCGATACAGATGTC 59.342 37.037 0.00 0.00 0.00 3.06
3833 7816 7.787725 ACTTGACATAATCTTTTCCCGATAC 57.212 36.000 0.00 0.00 0.00 2.24
3835 7818 7.280205 GTGTACTTGACATAATCTTTTCCCGAT 59.720 37.037 0.00 0.00 41.14 4.18
3836 7819 6.592607 GTGTACTTGACATAATCTTTTCCCGA 59.407 38.462 0.00 0.00 41.14 5.14
3837 7820 6.455113 CGTGTACTTGACATAATCTTTTCCCG 60.455 42.308 0.00 0.00 41.14 5.14
3849 7832 6.864342 AGTAAATAGAGCGTGTACTTGACAT 58.136 36.000 0.00 0.00 41.14 3.06
3850 7833 6.263516 AGTAAATAGAGCGTGTACTTGACA 57.736 37.500 0.00 0.00 34.94 3.58
3862 7846 2.930040 TCACGCAGCAAGTAAATAGAGC 59.070 45.455 0.00 0.00 0.00 4.09
3865 7849 3.000674 CGAGTCACGCAGCAAGTAAATAG 60.001 47.826 0.00 0.00 34.51 1.73
3871 7855 0.529773 TTTCGAGTCACGCAGCAAGT 60.530 50.000 0.00 0.00 42.26 3.16
3872 7856 0.162507 CTTTCGAGTCACGCAGCAAG 59.837 55.000 0.00 0.00 42.26 4.01
3873 7857 0.529773 ACTTTCGAGTCACGCAGCAA 60.530 50.000 0.00 0.00 42.26 3.91
3874 7858 0.529773 AACTTTCGAGTCACGCAGCA 60.530 50.000 0.00 0.00 42.26 4.41
3875 7859 0.582005 AAACTTTCGAGTCACGCAGC 59.418 50.000 0.00 0.00 42.26 5.25
3876 7860 2.561976 GAAACTTTCGAGTCACGCAG 57.438 50.000 0.00 0.00 42.26 5.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.