Multiple sequence alignment - TraesCS2B01G003500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G003500 chr2B 100.000 4085 0 0 1 4085 1801581 1797497 0.000000e+00 7544
1 TraesCS2B01G003500 chr2B 94.073 2514 124 12 1025 3516 1775250 1772740 0.000000e+00 3794
2 TraesCS2B01G003500 chr2B 93.986 2511 126 12 1028 3516 1759983 1757476 0.000000e+00 3777
3 TraesCS2B01G003500 chr2B 80.656 915 157 13 1346 2253 37346638 37347539 0.000000e+00 691
4 TraesCS2B01G003500 chr2B 94.500 400 20 2 3687 4085 1757407 1757009 2.090000e-172 616
5 TraesCS2B01G003500 chr2B 94.279 402 19 4 3687 4085 1772671 1772271 2.700000e-171 612
6 TraesCS2B01G003500 chr2B 92.807 431 15 2 591 1015 1775712 1775292 9.710000e-171 610
7 TraesCS2B01G003500 chr2B 92.361 432 16 3 591 1015 1760449 1760028 2.100000e-167 599
8 TraesCS2B01G003500 chr2B 96.364 110 4 0 3517 3626 770902450 770902341 9.020000e-42 182
9 TraesCS2B01G003500 chr2D 86.927 1025 113 9 1203 2221 7176866 7177875 0.000000e+00 1131
10 TraesCS2B01G003500 chr2D 81.284 919 153 14 1346 2256 23180167 23179260 0.000000e+00 726
11 TraesCS2B01G003500 chr2D 84.240 717 96 13 2595 3304 7197101 7197807 0.000000e+00 682
12 TraesCS2B01G003500 chr2D 84.167 600 93 2 2344 2942 23177959 23177361 7.610000e-162 580
13 TraesCS2B01G003500 chr2D 91.061 179 15 1 3905 4082 571925053 571924875 1.470000e-59 241
14 TraesCS2B01G003500 chr2D 83.190 232 19 5 600 811 7176508 7176739 1.160000e-45 195
15 TraesCS2B01G003500 chr2D 79.775 267 28 7 139 402 7174223 7174466 1.950000e-38 171
16 TraesCS2B01G003500 chr6D 91.758 182 14 1 1025 1206 420007530 420007350 6.780000e-63 252
17 TraesCS2B01G003500 chr6D 94.017 117 6 1 3516 3632 456557468 456557353 4.200000e-40 176
18 TraesCS2B01G003500 chr5B 91.758 182 13 2 1025 1205 146336536 146336356 6.780000e-63 252
19 TraesCS2B01G003500 chr5B 91.111 180 14 2 3906 4084 606282808 606282630 4.080000e-60 243
20 TraesCS2B01G003500 chr4D 92.571 175 12 1 1022 1196 100317677 100317850 2.440000e-62 250
21 TraesCS2B01G003500 chr4D 94.643 112 5 1 3520 3631 8658739 8658849 5.430000e-39 172
22 TraesCS2B01G003500 chr4D 93.103 116 6 2 3512 3626 441486822 441486708 7.020000e-38 169
23 TraesCS2B01G003500 chr4D 71.702 523 126 20 2344 2855 503565022 503565533 4.290000e-25 126
24 TraesCS2B01G003500 chr2A 90.270 185 16 2 1025 1208 575349199 575349016 1.470000e-59 241
25 TraesCS2B01G003500 chr2A 88.333 180 20 1 3905 4083 522488 522309 8.890000e-52 215
26 TraesCS2B01G003500 chr1D 91.061 179 15 1 3905 4082 83695421 83695243 1.470000e-59 241
27 TraesCS2B01G003500 chr1D 91.477 176 14 1 1022 1197 475865050 475865224 1.470000e-59 241
28 TraesCS2B01G003500 chr3D 89.785 186 18 1 1022 1207 11048937 11049121 1.900000e-58 237
29 TraesCS2B01G003500 chr3D 89.785 186 17 2 1025 1210 536423754 536423571 1.900000e-58 237
30 TraesCS2B01G003500 chr1B 89.503 181 18 1 3905 4084 525829999 525829819 1.140000e-55 228
31 TraesCS2B01G003500 chr1B 92.126 127 9 1 3510 3635 655252684 655252558 1.170000e-40 178
32 TraesCS2B01G003500 chr3B 89.888 178 15 3 3905 4081 603492982 603492807 4.110000e-55 226
33 TraesCS2B01G003500 chr3B 93.220 118 5 3 3512 3626 728614825 728614942 1.950000e-38 171
34 TraesCS2B01G003500 chr7D 97.692 130 2 1 1 130 32681215 32681087 5.310000e-54 222
35 TraesCS2B01G003500 chr7D 88.268 179 17 3 3905 4082 458351730 458351905 1.150000e-50 211
36 TraesCS2B01G003500 chr6A 93.130 131 1 4 1 130 8418450 8418327 6.970000e-43 185
37 TraesCS2B01G003500 chr5D 93.333 120 6 2 3511 3629 399621958 399621840 4.200000e-40 176
38 TraesCS2B01G003500 chr5D 94.643 112 5 1 3516 3627 391258928 391258818 5.430000e-39 172
39 TraesCS2B01G003500 chr7B 92.437 119 8 1 3516 3633 420072801 420072683 7.020000e-38 169


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G003500 chr2B 1797497 1801581 4084 True 7544 7544 100.000000 1 4085 1 chr2B.!!$R1 4084
1 TraesCS2B01G003500 chr2B 1772271 1775712 3441 True 1672 3794 93.719667 591 4085 3 chr2B.!!$R4 3494
2 TraesCS2B01G003500 chr2B 1757009 1760449 3440 True 1664 3777 93.615667 591 4085 3 chr2B.!!$R3 3494
3 TraesCS2B01G003500 chr2B 37346638 37347539 901 False 691 691 80.656000 1346 2253 1 chr2B.!!$F1 907
4 TraesCS2B01G003500 chr2D 7197101 7197807 706 False 682 682 84.240000 2595 3304 1 chr2D.!!$F1 709
5 TraesCS2B01G003500 chr2D 23177361 23180167 2806 True 653 726 82.725500 1346 2942 2 chr2D.!!$R2 1596
6 TraesCS2B01G003500 chr2D 7174223 7177875 3652 False 499 1131 83.297333 139 2221 3 chr2D.!!$F2 2082

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
185 186 0.379316 AACAAAAGACCAACGTCGGC 59.621 50.0 0.0 0.0 44.28 5.54 F
1529 3449 0.179048 CTTCCGCACCATAGGATGCA 60.179 55.0 0.0 0.0 42.17 3.96 F
2221 4141 0.247736 CTTGGAGTTCCCTCTCACCG 59.752 60.0 0.0 0.0 37.86 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1557 3477 0.464036 CACCAAGGCGGAGTAGCATA 59.536 55.0 0.00 0.00 39.27 3.14 R
2659 5792 0.179020 GTCCCAATGCATCGGATCCA 60.179 55.0 13.41 0.00 0.00 3.41 R
3608 6760 0.038744 ACTACTCCCTCCGTTCGGAA 59.961 55.0 14.79 0.04 33.41 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.485830 ACACAGGCATTATGTATAGTCTGT 57.514 37.500 0.00 0.00 34.98 3.41
24 25 6.889198 ACACAGGCATTATGTATAGTCTGTT 58.111 36.000 0.00 0.00 32.71 3.16
25 26 6.763135 ACACAGGCATTATGTATAGTCTGTTG 59.237 38.462 0.00 0.00 32.71 3.33
26 27 6.986231 CACAGGCATTATGTATAGTCTGTTGA 59.014 38.462 0.00 0.00 32.71 3.18
27 28 7.495606 CACAGGCATTATGTATAGTCTGTTGAA 59.504 37.037 0.00 0.00 32.71 2.69
28 29 8.046708 ACAGGCATTATGTATAGTCTGTTGAAA 58.953 33.333 0.00 0.00 31.17 2.69
29 30 9.060347 CAGGCATTATGTATAGTCTGTTGAAAT 57.940 33.333 0.00 0.00 0.00 2.17
30 31 9.060347 AGGCATTATGTATAGTCTGTTGAAATG 57.940 33.333 0.00 0.00 0.00 2.32
31 32 7.805071 GGCATTATGTATAGTCTGTTGAAATGC 59.195 37.037 0.00 0.00 42.78 3.56
32 33 8.344831 GCATTATGTATAGTCTGTTGAAATGCA 58.655 33.333 0.00 0.00 42.94 3.96
33 34 9.874215 CATTATGTATAGTCTGTTGAAATGCAG 57.126 33.333 0.00 0.00 0.00 4.41
34 35 6.932356 ATGTATAGTCTGTTGAAATGCAGG 57.068 37.500 0.00 0.00 33.81 4.85
35 36 4.635765 TGTATAGTCTGTTGAAATGCAGGC 59.364 41.667 0.00 0.00 37.58 4.85
36 37 2.283145 AGTCTGTTGAAATGCAGGCT 57.717 45.000 0.00 0.00 42.16 4.58
37 38 2.590821 AGTCTGTTGAAATGCAGGCTT 58.409 42.857 0.00 0.00 44.22 4.35
38 39 2.295349 AGTCTGTTGAAATGCAGGCTTG 59.705 45.455 0.00 0.00 44.22 4.01
39 40 5.409890 AGTCTGTTGAAATGCAGGCTTGC 62.410 47.826 14.88 14.88 44.22 4.01
50 51 3.650070 GCAGGCTTGCTAAGTTCTTTT 57.350 42.857 14.45 0.00 46.95 2.27
51 52 4.766404 GCAGGCTTGCTAAGTTCTTTTA 57.234 40.909 14.45 0.00 46.95 1.52
52 53 5.316327 GCAGGCTTGCTAAGTTCTTTTAT 57.684 39.130 14.45 0.00 46.95 1.40
53 54 5.714047 GCAGGCTTGCTAAGTTCTTTTATT 58.286 37.500 14.45 0.00 46.95 1.40
54 55 6.159293 GCAGGCTTGCTAAGTTCTTTTATTT 58.841 36.000 14.45 0.00 46.95 1.40
55 56 6.309009 GCAGGCTTGCTAAGTTCTTTTATTTC 59.691 38.462 14.45 0.00 46.95 2.17
56 57 6.524586 CAGGCTTGCTAAGTTCTTTTATTTCG 59.475 38.462 0.00 0.00 0.00 3.46
57 58 6.206829 AGGCTTGCTAAGTTCTTTTATTTCGT 59.793 34.615 0.00 0.00 0.00 3.85
58 59 6.861572 GGCTTGCTAAGTTCTTTTATTTCGTT 59.138 34.615 0.00 0.00 0.00 3.85
59 60 7.148967 GGCTTGCTAAGTTCTTTTATTTCGTTG 60.149 37.037 0.00 0.00 0.00 4.10
60 61 7.617325 GCTTGCTAAGTTCTTTTATTTCGTTGC 60.617 37.037 0.00 0.00 0.00 4.17
61 62 6.966021 TGCTAAGTTCTTTTATTTCGTTGCT 58.034 32.000 0.00 0.00 0.00 3.91
62 63 8.090250 TGCTAAGTTCTTTTATTTCGTTGCTA 57.910 30.769 0.00 0.00 0.00 3.49
63 64 8.726988 TGCTAAGTTCTTTTATTTCGTTGCTAT 58.273 29.630 0.00 0.00 0.00 2.97
64 65 9.000018 GCTAAGTTCTTTTATTTCGTTGCTATG 58.000 33.333 0.00 0.00 0.00 2.23
65 66 9.490663 CTAAGTTCTTTTATTTCGTTGCTATGG 57.509 33.333 0.00 0.00 0.00 2.74
66 67 7.448748 AGTTCTTTTATTTCGTTGCTATGGT 57.551 32.000 0.00 0.00 0.00 3.55
67 68 7.527457 AGTTCTTTTATTTCGTTGCTATGGTC 58.473 34.615 0.00 0.00 0.00 4.02
68 69 6.431198 TCTTTTATTTCGTTGCTATGGTCC 57.569 37.500 0.00 0.00 0.00 4.46
69 70 5.941058 TCTTTTATTTCGTTGCTATGGTCCA 59.059 36.000 0.00 0.00 0.00 4.02
70 71 6.601613 TCTTTTATTTCGTTGCTATGGTCCAT 59.398 34.615 9.88 9.88 0.00 3.41
71 72 7.771361 TCTTTTATTTCGTTGCTATGGTCCATA 59.229 33.333 11.22 11.22 0.00 2.74
72 73 8.458573 TTTTATTTCGTTGCTATGGTCCATAT 57.541 30.769 12.13 0.00 0.00 1.78
73 74 8.458573 TTTATTTCGTTGCTATGGTCCATATT 57.541 30.769 12.13 0.00 0.00 1.28
74 75 6.959639 ATTTCGTTGCTATGGTCCATATTT 57.040 33.333 12.13 0.00 0.00 1.40
75 76 6.767524 TTTCGTTGCTATGGTCCATATTTT 57.232 33.333 12.13 0.00 0.00 1.82
76 77 6.371809 TTCGTTGCTATGGTCCATATTTTC 57.628 37.500 12.13 3.46 0.00 2.29
77 78 5.680619 TCGTTGCTATGGTCCATATTTTCT 58.319 37.500 12.13 0.00 0.00 2.52
78 79 5.527214 TCGTTGCTATGGTCCATATTTTCTG 59.473 40.000 12.13 0.99 0.00 3.02
79 80 5.527214 CGTTGCTATGGTCCATATTTTCTGA 59.473 40.000 12.13 0.00 0.00 3.27
80 81 6.038161 CGTTGCTATGGTCCATATTTTCTGAA 59.962 38.462 12.13 0.00 0.00 3.02
81 82 7.415095 CGTTGCTATGGTCCATATTTTCTGAAA 60.415 37.037 12.13 0.00 0.00 2.69
82 83 7.572523 TGCTATGGTCCATATTTTCTGAAAG 57.427 36.000 12.13 0.00 0.00 2.62
83 84 6.547141 TGCTATGGTCCATATTTTCTGAAAGG 59.453 38.462 12.13 1.73 0.00 3.11
84 85 6.547510 GCTATGGTCCATATTTTCTGAAAGGT 59.452 38.462 12.13 0.00 0.00 3.50
85 86 7.068716 GCTATGGTCCATATTTTCTGAAAGGTT 59.931 37.037 12.13 0.00 0.00 3.50
86 87 7.797121 ATGGTCCATATTTTCTGAAAGGTTT 57.203 32.000 1.24 0.00 0.00 3.27
87 88 7.227049 TGGTCCATATTTTCTGAAAGGTTTC 57.773 36.000 2.75 0.00 37.69 2.78
88 89 7.010160 TGGTCCATATTTTCTGAAAGGTTTCT 58.990 34.615 2.75 0.00 38.02 2.52
89 90 8.167392 TGGTCCATATTTTCTGAAAGGTTTCTA 58.833 33.333 2.75 0.00 38.02 2.10
90 91 8.459635 GGTCCATATTTTCTGAAAGGTTTCTAC 58.540 37.037 2.75 0.00 38.02 2.59
91 92 9.232473 GTCCATATTTTCTGAAAGGTTTCTACT 57.768 33.333 2.75 0.00 38.02 2.57
127 128 2.067414 TTTTTAAATGAACGGGCGCC 57.933 45.000 21.18 21.18 0.00 6.53
143 144 1.854126 GCGCCGCGTCTAGTTAATAAA 59.146 47.619 15.34 0.00 0.00 1.40
146 147 3.549070 CGCCGCGTCTAGTTAATAAACTT 59.451 43.478 4.92 0.00 43.60 2.66
153 154 7.461156 CGCGTCTAGTTAATAAACTTGTGAGAC 60.461 40.741 0.00 8.08 43.60 3.36
157 158 5.567430 AGTTAATAAACTTGTGAGACCCCC 58.433 41.667 0.00 0.00 43.60 5.40
158 159 5.073965 AGTTAATAAACTTGTGAGACCCCCA 59.926 40.000 0.00 0.00 43.60 4.96
159 160 2.943036 TAAACTTGTGAGACCCCCAC 57.057 50.000 0.00 0.00 35.23 4.61
161 162 1.716028 AACTTGTGAGACCCCCACCC 61.716 60.000 0.00 0.00 33.80 4.61
163 164 3.777818 TTGTGAGACCCCCACCCGA 62.778 63.158 0.00 0.00 33.80 5.14
164 165 3.391382 GTGAGACCCCCACCCGAG 61.391 72.222 0.00 0.00 0.00 4.63
166 167 2.284405 GAGACCCCCACCCGAGAA 60.284 66.667 0.00 0.00 0.00 2.87
168 169 2.181445 GAGACCCCCACCCGAGAAAC 62.181 65.000 0.00 0.00 0.00 2.78
170 171 2.059345 GACCCCCACCCGAGAAACAA 62.059 60.000 0.00 0.00 0.00 2.83
172 173 0.468400 CCCCCACCCGAGAAACAAAA 60.468 55.000 0.00 0.00 0.00 2.44
173 174 0.958822 CCCCACCCGAGAAACAAAAG 59.041 55.000 0.00 0.00 0.00 2.27
174 175 1.477923 CCCCACCCGAGAAACAAAAGA 60.478 52.381 0.00 0.00 0.00 2.52
175 176 1.607148 CCCACCCGAGAAACAAAAGAC 59.393 52.381 0.00 0.00 0.00 3.01
176 177 1.607148 CCACCCGAGAAACAAAAGACC 59.393 52.381 0.00 0.00 0.00 3.85
177 178 2.294074 CACCCGAGAAACAAAAGACCA 58.706 47.619 0.00 0.00 0.00 4.02
178 179 2.685897 CACCCGAGAAACAAAAGACCAA 59.314 45.455 0.00 0.00 0.00 3.67
179 180 2.686405 ACCCGAGAAACAAAAGACCAAC 59.314 45.455 0.00 0.00 0.00 3.77
180 181 2.286772 CCCGAGAAACAAAAGACCAACG 60.287 50.000 0.00 0.00 0.00 4.10
181 182 2.353579 CCGAGAAACAAAAGACCAACGT 59.646 45.455 0.00 0.00 0.00 3.99
182 183 3.545426 CCGAGAAACAAAAGACCAACGTC 60.545 47.826 0.00 0.00 39.50 4.34
183 184 3.604392 GAGAAACAAAAGACCAACGTCG 58.396 45.455 0.00 0.00 44.28 5.12
184 185 2.353579 AGAAACAAAAGACCAACGTCGG 59.646 45.455 0.00 0.00 44.28 4.79
185 186 0.379316 AACAAAAGACCAACGTCGGC 59.621 50.000 0.00 0.00 44.28 5.54
227 228 6.089417 GCAAGTACACAATCCAGTTTTTATGC 59.911 38.462 0.00 0.00 0.00 3.14
250 251 5.120053 GCCCATATTTGCAGTAAAACAACAC 59.880 40.000 0.00 0.00 0.00 3.32
252 253 6.146216 CCATATTTGCAGTAAAACAACACGA 58.854 36.000 0.00 0.00 0.00 4.35
253 254 6.638873 CCATATTTGCAGTAAAACAACACGAA 59.361 34.615 0.00 0.00 0.00 3.85
254 255 7.168302 CCATATTTGCAGTAAAACAACACGAAA 59.832 33.333 0.00 0.00 0.00 3.46
256 257 9.900710 ATATTTGCAGTAAAACAACACGAAATA 57.099 25.926 0.00 0.00 0.00 1.40
257 258 8.635877 ATTTGCAGTAAAACAACACGAAATAA 57.364 26.923 0.00 0.00 0.00 1.40
258 259 7.439204 TTGCAGTAAAACAACACGAAATAAC 57.561 32.000 0.00 0.00 0.00 1.89
259 260 6.787225 TGCAGTAAAACAACACGAAATAACT 58.213 32.000 0.00 0.00 0.00 2.24
260 261 6.908284 TGCAGTAAAACAACACGAAATAACTC 59.092 34.615 0.00 0.00 0.00 3.01
262 263 7.111593 GCAGTAAAACAACACGAAATAACTCAG 59.888 37.037 0.00 0.00 0.00 3.35
263 264 8.120465 CAGTAAAACAACACGAAATAACTCAGT 58.880 33.333 0.00 0.00 0.00 3.41
264 265 8.671028 AGTAAAACAACACGAAATAACTCAGTT 58.329 29.630 0.00 0.00 0.00 3.16
265 266 9.281075 GTAAAACAACACGAAATAACTCAGTTT 57.719 29.630 0.00 0.00 0.00 2.66
266 267 7.964545 AAACAACACGAAATAACTCAGTTTC 57.035 32.000 0.00 0.00 0.00 2.78
267 268 6.671614 ACAACACGAAATAACTCAGTTTCA 57.328 33.333 0.00 0.00 34.76 2.69
268 269 7.079182 ACAACACGAAATAACTCAGTTTCAA 57.921 32.000 0.00 0.00 34.76 2.69
269 270 7.186804 ACAACACGAAATAACTCAGTTTCAAG 58.813 34.615 0.00 0.00 34.76 3.02
270 271 5.748592 ACACGAAATAACTCAGTTTCAAGC 58.251 37.500 0.00 0.00 34.76 4.01
271 272 5.147162 CACGAAATAACTCAGTTTCAAGCC 58.853 41.667 0.00 0.00 34.76 4.35
272 273 5.049405 CACGAAATAACTCAGTTTCAAGCCT 60.049 40.000 0.00 0.00 34.76 4.58
273 274 5.531287 ACGAAATAACTCAGTTTCAAGCCTT 59.469 36.000 0.00 0.00 34.76 4.35
274 275 5.853282 CGAAATAACTCAGTTTCAAGCCTTG 59.147 40.000 0.00 0.00 34.76 3.61
275 276 5.712152 AATAACTCAGTTTCAAGCCTTGG 57.288 39.130 4.30 0.00 0.00 3.61
276 277 1.986882 ACTCAGTTTCAAGCCTTGGG 58.013 50.000 4.30 0.00 0.00 4.12
277 278 1.215423 ACTCAGTTTCAAGCCTTGGGT 59.785 47.619 4.30 0.00 0.00 4.51
278 279 2.441750 ACTCAGTTTCAAGCCTTGGGTA 59.558 45.455 4.30 0.00 0.00 3.69
279 280 2.814336 CTCAGTTTCAAGCCTTGGGTAC 59.186 50.000 4.30 0.96 0.00 3.34
286 287 0.605589 AAGCCTTGGGTACGCACTTC 60.606 55.000 12.81 4.42 0.00 3.01
362 366 3.503748 AGTGGCAAACTTTAAGCTAGCTG 59.496 43.478 20.16 8.23 34.57 4.24
365 369 3.237628 GCAAACTTTAAGCTAGCTGTGC 58.762 45.455 20.16 14.61 0.00 4.57
370 374 3.199946 ACTTTAAGCTAGCTGTGCCCATA 59.800 43.478 20.16 1.49 0.00 2.74
411 1479 7.861372 ACTCAATCTTACAAGGTCGAATATACG 59.139 37.037 0.00 0.00 0.00 3.06
468 2282 4.996758 ACTTTAGTTGCATTTTGGGATTGC 59.003 37.500 0.00 0.00 35.66 3.56
469 2283 4.888326 TTAGTTGCATTTTGGGATTGCT 57.112 36.364 0.00 0.00 36.00 3.91
471 2285 4.888326 AGTTGCATTTTGGGATTGCTTA 57.112 36.364 0.00 0.00 36.00 3.09
472 2286 5.425196 AGTTGCATTTTGGGATTGCTTAT 57.575 34.783 0.00 0.00 36.00 1.73
474 2288 6.340522 AGTTGCATTTTGGGATTGCTTATAC 58.659 36.000 0.00 0.00 36.00 1.47
475 2289 6.155049 AGTTGCATTTTGGGATTGCTTATACT 59.845 34.615 0.00 0.00 36.00 2.12
476 2290 6.147864 TGCATTTTGGGATTGCTTATACTC 57.852 37.500 0.00 0.00 36.00 2.59
477 2291 5.215160 GCATTTTGGGATTGCTTATACTCG 58.785 41.667 0.00 0.00 33.06 4.18
479 2293 6.430451 CATTTTGGGATTGCTTATACTCGTC 58.570 40.000 0.00 0.00 0.00 4.20
480 2294 4.746535 TTGGGATTGCTTATACTCGTCA 57.253 40.909 0.00 0.00 0.00 4.35
481 2295 4.054780 TGGGATTGCTTATACTCGTCAC 57.945 45.455 0.00 0.00 0.00 3.67
482 2296 3.181469 TGGGATTGCTTATACTCGTCACC 60.181 47.826 0.00 0.00 0.00 4.02
531 2345 6.420913 ACAACAAGAGTAGTCATAAGGTGT 57.579 37.500 0.00 0.00 0.00 4.16
537 2351 6.026947 AGAGTAGTCATAAGGTGTTCACAC 57.973 41.667 1.10 1.10 45.72 3.82
540 2354 7.616150 AGAGTAGTCATAAGGTGTTCACACTAT 59.384 37.037 9.88 2.38 45.73 2.12
541 2355 8.135382 AGTAGTCATAAGGTGTTCACACTATT 57.865 34.615 9.88 7.87 45.73 1.73
542 2356 8.594550 AGTAGTCATAAGGTGTTCACACTATTT 58.405 33.333 9.88 5.46 45.73 1.40
544 2358 7.680730 AGTCATAAGGTGTTCACACTATTTCT 58.319 34.615 9.88 0.00 45.73 2.52
545 2359 8.157476 AGTCATAAGGTGTTCACACTATTTCTT 58.843 33.333 9.88 6.85 45.73 2.52
546 2360 8.784043 GTCATAAGGTGTTCACACTATTTCTTT 58.216 33.333 9.88 0.00 45.73 2.52
547 2361 8.999431 TCATAAGGTGTTCACACTATTTCTTTC 58.001 33.333 9.88 0.00 45.73 2.62
549 2363 7.881775 AAGGTGTTCACACTATTTCTTTCTT 57.118 32.000 9.88 0.00 45.73 2.52
550 2364 7.264373 AGGTGTTCACACTATTTCTTTCTTG 57.736 36.000 9.88 0.00 45.73 3.02
551 2365 5.915196 GGTGTTCACACTATTTCTTTCTTGC 59.085 40.000 9.88 0.00 45.73 4.01
552 2366 6.459573 GGTGTTCACACTATTTCTTTCTTGCA 60.460 38.462 9.88 0.00 45.73 4.08
554 2368 6.542005 TGTTCACACTATTTCTTTCTTGCAGA 59.458 34.615 0.00 0.00 0.00 4.26
555 2369 7.229306 TGTTCACACTATTTCTTTCTTGCAGAT 59.771 33.333 0.00 0.00 0.00 2.90
556 2370 7.369803 TCACACTATTTCTTTCTTGCAGATC 57.630 36.000 0.00 0.00 0.00 2.75
557 2371 7.164122 TCACACTATTTCTTTCTTGCAGATCT 58.836 34.615 0.00 0.00 0.00 2.75
558 2372 7.332926 TCACACTATTTCTTTCTTGCAGATCTC 59.667 37.037 0.00 0.00 0.00 2.75
559 2373 7.118825 CACACTATTTCTTTCTTGCAGATCTCA 59.881 37.037 0.00 0.00 0.00 3.27
560 2374 7.828223 ACACTATTTCTTTCTTGCAGATCTCAT 59.172 33.333 0.00 0.00 0.00 2.90
561 2375 8.675504 CACTATTTCTTTCTTGCAGATCTCATT 58.324 33.333 0.00 0.00 0.00 2.57
565 2379 6.674694 TCTTTCTTGCAGATCTCATTAAGC 57.325 37.500 0.00 0.00 0.00 3.09
567 2381 6.883217 TCTTTCTTGCAGATCTCATTAAGCTT 59.117 34.615 3.48 3.48 0.00 3.74
570 2384 8.565896 TTCTTGCAGATCTCATTAAGCTTTTA 57.434 30.769 3.20 0.00 0.00 1.52
572 2386 9.836864 TCTTGCAGATCTCATTAAGCTTTTATA 57.163 29.630 3.20 0.00 0.00 0.98
651 2503 5.287035 GTGCTTGTTTGAACTGAAGAAACAG 59.713 40.000 0.00 0.00 39.90 3.16
822 2694 9.556030 GTAACTTGAGGCAACAATTATACTTTC 57.444 33.333 0.00 0.00 41.41 2.62
861 2734 7.112984 GGCAACAATTAGACTTAACAACTTTCG 59.887 37.037 0.00 0.00 0.00 3.46
973 2848 1.308998 ATGCCGGCAGCTATACAAAC 58.691 50.000 35.36 0.00 44.23 2.93
991 2866 1.214589 CGTACTCCCACCGTCCTTG 59.785 63.158 0.00 0.00 0.00 3.61
1002 2877 3.318017 CACCGTCCTTGAAAGAGTGTAG 58.682 50.000 0.00 0.00 0.00 2.74
1015 2890 7.054124 TGAAAGAGTGTAGTTCTTTGTTGGAT 58.946 34.615 5.08 0.00 43.07 3.41
1016 2891 7.556275 TGAAAGAGTGTAGTTCTTTGTTGGATT 59.444 33.333 5.08 0.00 43.07 3.01
1018 2893 5.765182 AGAGTGTAGTTCTTTGTTGGATTGG 59.235 40.000 0.00 0.00 0.00 3.16
1019 2894 5.690865 AGTGTAGTTCTTTGTTGGATTGGA 58.309 37.500 0.00 0.00 0.00 3.53
1020 2895 6.306987 AGTGTAGTTCTTTGTTGGATTGGAT 58.693 36.000 0.00 0.00 0.00 3.41
1021 2896 6.777580 AGTGTAGTTCTTTGTTGGATTGGATT 59.222 34.615 0.00 0.00 0.00 3.01
1023 2898 8.237267 GTGTAGTTCTTTGTTGGATTGGATTAG 58.763 37.037 0.00 0.00 0.00 1.73
1064 2971 6.865205 GCCATCAAATTAGTAGCATTGGATTC 59.135 38.462 0.00 0.00 0.00 2.52
1145 3052 5.392767 TGCACAAACTTGGTCAAACTTTA 57.607 34.783 0.00 0.00 0.00 1.85
1196 3103 7.710766 AGAAAGTACACTCTTTTAAAGACGG 57.289 36.000 2.94 1.77 37.70 4.79
1205 3112 6.802834 CACTCTTTTAAAGACGGAGAGAGTAC 59.197 42.308 16.97 0.00 40.05 2.73
1208 3115 8.038492 TCTTTTAAAGACGGAGAGAGTACTAC 57.962 38.462 2.94 0.00 31.20 2.73
1248 3155 6.258160 CGGCACTTGGAAACTAATTTCATAG 58.742 40.000 0.00 0.00 45.26 2.23
1280 3187 3.130819 TAATGGCCGGCACTTGCG 61.131 61.111 30.85 0.00 43.26 4.85
1448 3368 3.467226 CCTTCGAGCCGGCCCTAA 61.467 66.667 26.15 9.16 0.00 2.69
1503 3423 2.710377 GGTCACTTGCACCACATGATA 58.290 47.619 0.00 0.00 33.63 2.15
1529 3449 0.179048 CTTCCGCACCATAGGATGCA 60.179 55.000 0.00 0.00 42.17 3.96
1543 3463 3.329542 ATGCACGACCTTGCCCGAT 62.330 57.895 0.00 0.00 42.25 4.18
1572 3492 1.139058 CCACTTATGCTACTCCGCCTT 59.861 52.381 0.00 0.00 0.00 4.35
1593 3513 3.376078 GACCTGCCCGTCGTGGTA 61.376 66.667 0.00 0.00 35.15 3.25
1603 3523 1.499056 GTCGTGGTAGCTTCGTCGA 59.501 57.895 0.00 0.00 0.00 4.20
1686 3606 0.975556 TGATCAAGCGGCTGACCCTA 60.976 55.000 1.81 0.00 0.00 3.53
1865 3785 3.816090 AACGGCAACACCAGGGGT 61.816 61.111 0.00 0.00 39.03 4.95
1995 3915 3.827302 GGGAAGGTATCGAGCTATTCTCA 59.173 47.826 0.00 0.00 41.98 3.27
1998 3918 5.241949 GGAAGGTATCGAGCTATTCTCAAGA 59.758 44.000 0.00 0.00 41.98 3.02
2138 4058 2.669569 CCAAGTGCCACCACGAGG 60.670 66.667 0.00 0.00 46.62 4.63
2221 4141 0.247736 CTTGGAGTTCCCTCTCACCG 59.752 60.000 0.00 0.00 37.86 4.94
2229 4149 2.421314 CCTCTCACCGCACACACA 59.579 61.111 0.00 0.00 0.00 3.72
2260 4180 6.583089 CCGTGATGGCGGTAAGCTAGTTAT 62.583 50.000 0.00 0.00 46.11 1.89
2278 4198 5.126067 AGTTATGACTAACCACATGATGGC 58.874 41.667 12.53 0.16 43.10 4.40
2288 4208 3.548770 CCACATGATGGCACTACTTCAT 58.451 45.455 0.00 0.00 43.24 2.57
2292 4217 6.936335 CCACATGATGGCACTACTTCATAATA 59.064 38.462 0.00 0.00 43.24 0.98
2299 4224 9.579768 GATGGCACTACTTCATAATACATCTAG 57.420 37.037 0.00 0.00 0.00 2.43
2328 5023 1.945387 ATATGCCGCACACTGAAGAG 58.055 50.000 0.00 0.00 0.00 2.85
2412 5545 4.554036 GGGCCATGTCCGAGCTCC 62.554 72.222 8.47 0.00 0.00 4.70
2659 5792 2.111043 CGCTTGGGCCATCGGTAT 59.889 61.111 7.26 0.00 34.44 2.73
2897 6030 1.771255 GACCTGGATATGGCAGAGGTT 59.229 52.381 0.00 0.00 37.16 3.50
2903 6036 2.205074 GATATGGCAGAGGTTGTCACG 58.795 52.381 0.00 0.00 45.75 4.35
2963 6096 0.318360 TGGTTCGCGTGCCGATATAG 60.318 55.000 5.77 0.00 46.81 1.31
2974 6107 0.036952 CCGATATAGCCAGCCCACTG 60.037 60.000 0.00 0.00 44.05 3.66
3056 6189 8.175925 TGTTTATCTCATGGTCATTTTTGTGA 57.824 30.769 0.00 0.00 0.00 3.58
3091 6229 1.339929 TGTGCGTACAGTGATCACAGT 59.660 47.619 27.02 25.84 33.33 3.55
3165 6303 0.037882 TCGCTCTCTGCACTCCAAAG 60.038 55.000 0.00 0.00 43.06 2.77
3228 6366 8.662141 GTCAAACCAATATAAGTAGAAAGCGAA 58.338 33.333 0.00 0.00 0.00 4.70
3243 6381 1.274167 AGCGAAACACCGATCCAACTA 59.726 47.619 0.00 0.00 0.00 2.24
3276 6414 2.504244 GAGACGGACGGCAACTCG 60.504 66.667 0.00 0.00 0.00 4.18
3332 6471 2.158608 CCCCTGTCTCTTCACCTTGTTT 60.159 50.000 0.00 0.00 0.00 2.83
3337 6476 2.879026 GTCTCTTCACCTTGTTTCCCAC 59.121 50.000 0.00 0.00 0.00 4.61
3338 6477 2.158667 TCTCTTCACCTTGTTTCCCACC 60.159 50.000 0.00 0.00 0.00 4.61
3339 6478 1.850345 TCTTCACCTTGTTTCCCACCT 59.150 47.619 0.00 0.00 0.00 4.00
3341 6480 0.107831 TCACCTTGTTTCCCACCTCG 59.892 55.000 0.00 0.00 0.00 4.63
3342 6481 1.228154 ACCTTGTTTCCCACCTCGC 60.228 57.895 0.00 0.00 0.00 5.03
3344 6483 1.228124 CTTGTTTCCCACCTCGCCA 60.228 57.895 0.00 0.00 0.00 5.69
3410 6550 2.025727 CGTCGATGGGTAGGACGC 59.974 66.667 0.00 0.00 45.55 5.19
3507 6659 4.991687 GCATGTATAGCTTCCACTAGGTTC 59.008 45.833 0.00 0.00 35.89 3.62
3511 6663 7.195374 TGTATAGCTTCCACTAGGTTCATTT 57.805 36.000 0.00 0.00 35.89 2.32
3513 6665 7.552687 TGTATAGCTTCCACTAGGTTCATTTTG 59.447 37.037 0.00 0.00 35.89 2.44
3514 6666 4.985538 AGCTTCCACTAGGTTCATTTTGA 58.014 39.130 0.00 0.00 35.89 2.69
3515 6667 5.574188 AGCTTCCACTAGGTTCATTTTGAT 58.426 37.500 0.00 0.00 35.89 2.57
3518 6670 8.494433 AGCTTCCACTAGGTTCATTTTGATATA 58.506 33.333 0.00 0.00 35.89 0.86
3519 6671 9.289782 GCTTCCACTAGGTTCATTTTGATATAT 57.710 33.333 0.00 0.00 35.89 0.86
3528 6680 8.606830 AGGTTCATTTTGATATATACTCCCTCC 58.393 37.037 0.00 0.00 0.00 4.30
3529 6681 7.549488 GGTTCATTTTGATATATACTCCCTCCG 59.451 40.741 0.00 0.00 0.00 4.63
3530 6682 7.792364 TCATTTTGATATATACTCCCTCCGT 57.208 36.000 0.00 0.00 0.00 4.69
3531 6683 8.202461 TCATTTTGATATATACTCCCTCCGTT 57.798 34.615 0.00 0.00 0.00 4.44
3532 6684 8.311836 TCATTTTGATATATACTCCCTCCGTTC 58.688 37.037 0.00 0.00 0.00 3.95
3534 6686 5.265290 TGATATATACTCCCTCCGTTCCA 57.735 43.478 0.00 0.00 0.00 3.53
3535 6687 5.647230 TGATATATACTCCCTCCGTTCCAA 58.353 41.667 0.00 0.00 0.00 3.53
3536 6688 6.079336 TGATATATACTCCCTCCGTTCCAAA 58.921 40.000 0.00 0.00 0.00 3.28
3537 6689 6.729100 TGATATATACTCCCTCCGTTCCAAAT 59.271 38.462 0.00 0.00 0.00 2.32
3539 6691 8.674925 ATATATACTCCCTCCGTTCCAAATTA 57.325 34.615 0.00 0.00 0.00 1.40
3540 6692 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
3541 6693 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
3543 6695 3.681593 TCCCTCCGTTCCAAATTACTTG 58.318 45.455 0.00 0.00 34.52 3.16
3544 6696 3.073356 TCCCTCCGTTCCAAATTACTTGT 59.927 43.478 0.00 0.00 32.65 3.16
3545 6697 3.439129 CCCTCCGTTCCAAATTACTTGTC 59.561 47.826 0.00 0.00 32.65 3.18
3546 6698 3.124636 CCTCCGTTCCAAATTACTTGTCG 59.875 47.826 0.00 0.00 32.65 4.35
3547 6699 2.481185 TCCGTTCCAAATTACTTGTCGC 59.519 45.455 0.00 0.00 32.65 5.19
3548 6700 2.224549 CCGTTCCAAATTACTTGTCGCA 59.775 45.455 0.00 0.00 32.65 5.10
3549 6701 3.479006 CGTTCCAAATTACTTGTCGCAG 58.521 45.455 0.00 0.00 32.65 5.18
3550 6702 3.185594 CGTTCCAAATTACTTGTCGCAGA 59.814 43.478 0.00 0.00 32.65 4.26
3551 6703 4.319190 CGTTCCAAATTACTTGTCGCAGAA 60.319 41.667 0.00 0.00 39.69 3.02
3552 6704 5.516090 GTTCCAAATTACTTGTCGCAGAAA 58.484 37.500 0.00 0.00 39.69 2.52
3553 6705 5.957842 TCCAAATTACTTGTCGCAGAAAT 57.042 34.783 0.00 0.00 39.69 2.17
3554 6706 5.698832 TCCAAATTACTTGTCGCAGAAATG 58.301 37.500 0.00 0.00 39.69 2.32
3555 6707 4.858692 CCAAATTACTTGTCGCAGAAATGG 59.141 41.667 0.00 0.00 39.69 3.16
3556 6708 5.335583 CCAAATTACTTGTCGCAGAAATGGA 60.336 40.000 0.00 0.00 39.69 3.41
3557 6709 6.324819 CAAATTACTTGTCGCAGAAATGGAT 58.675 36.000 0.00 0.00 39.69 3.41
3558 6710 4.944962 TTACTTGTCGCAGAAATGGATG 57.055 40.909 0.00 0.00 39.69 3.51
3559 6711 2.783135 ACTTGTCGCAGAAATGGATGT 58.217 42.857 0.00 0.00 39.69 3.06
3560 6712 3.937814 ACTTGTCGCAGAAATGGATGTA 58.062 40.909 0.00 0.00 39.69 2.29
3561 6713 4.517285 ACTTGTCGCAGAAATGGATGTAT 58.483 39.130 0.00 0.00 39.69 2.29
3562 6714 4.572389 ACTTGTCGCAGAAATGGATGTATC 59.428 41.667 0.00 0.00 39.69 2.24
3563 6715 4.406648 TGTCGCAGAAATGGATGTATCT 57.593 40.909 0.00 0.00 39.69 1.98
3564 6716 5.529581 TGTCGCAGAAATGGATGTATCTA 57.470 39.130 0.00 0.00 39.69 1.98
3565 6717 5.532557 TGTCGCAGAAATGGATGTATCTAG 58.467 41.667 0.00 0.00 39.69 2.43
3566 6718 5.301805 TGTCGCAGAAATGGATGTATCTAGA 59.698 40.000 0.00 0.00 39.69 2.43
3567 6719 6.183360 TGTCGCAGAAATGGATGTATCTAGAA 60.183 38.462 0.00 0.00 39.69 2.10
3568 6720 6.144724 GTCGCAGAAATGGATGTATCTAGAAC 59.855 42.308 0.00 0.00 39.69 3.01
3569 6721 6.040955 TCGCAGAAATGGATGTATCTAGAACT 59.959 38.462 0.00 0.00 0.00 3.01
3570 6722 7.230712 TCGCAGAAATGGATGTATCTAGAACTA 59.769 37.037 0.00 0.00 0.00 2.24
3571 6723 7.867909 CGCAGAAATGGATGTATCTAGAACTAA 59.132 37.037 0.00 0.00 0.00 2.24
3572 6724 9.547753 GCAGAAATGGATGTATCTAGAACTAAA 57.452 33.333 0.00 0.00 0.00 1.85
3616 6768 8.889849 ATTTTTATGACAAGTAATTCCGAACG 57.110 30.769 0.00 0.00 0.00 3.95
3617 6769 6.411630 TTTATGACAAGTAATTCCGAACGG 57.588 37.500 6.94 6.94 0.00 4.44
3618 6770 3.663995 TGACAAGTAATTCCGAACGGA 57.336 42.857 12.04 12.04 43.52 4.69
3619 6771 3.581755 TGACAAGTAATTCCGAACGGAG 58.418 45.455 15.34 5.60 46.06 4.63
3620 6772 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
3621 6773 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
3622 6774 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
3623 6775 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
3624 6776 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
3625 6777 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
3626 6778 1.400737 ATTCCGAACGGAGGGAGTAG 58.599 55.000 15.34 0.00 46.06 2.57
3668 6820 2.297033 GACCAGACAACCAATGTGCATT 59.703 45.455 0.00 0.00 44.12 3.56
3669 6821 3.495331 ACCAGACAACCAATGTGCATTA 58.505 40.909 0.00 0.00 44.12 1.90
3670 6822 3.894427 ACCAGACAACCAATGTGCATTAA 59.106 39.130 0.00 0.00 44.12 1.40
3671 6823 4.022068 ACCAGACAACCAATGTGCATTAAG 60.022 41.667 0.00 0.00 44.12 1.85
3672 6824 4.022068 CCAGACAACCAATGTGCATTAAGT 60.022 41.667 0.00 0.00 44.12 2.24
3673 6825 5.509501 CCAGACAACCAATGTGCATTAAGTT 60.510 40.000 0.00 2.67 44.12 2.66
3674 6826 5.984926 CAGACAACCAATGTGCATTAAGTTT 59.015 36.000 0.00 3.83 44.12 2.66
3675 6827 5.984926 AGACAACCAATGTGCATTAAGTTTG 59.015 36.000 0.00 0.00 44.12 2.93
3676 6828 5.911752 ACAACCAATGTGCATTAAGTTTGA 58.088 33.333 0.00 0.00 41.93 2.69
3677 6829 5.752955 ACAACCAATGTGCATTAAGTTTGAC 59.247 36.000 0.00 0.00 41.93 3.18
3678 6830 4.881920 ACCAATGTGCATTAAGTTTGACC 58.118 39.130 0.00 0.00 0.00 4.02
3679 6831 3.919804 CCAATGTGCATTAAGTTTGACCG 59.080 43.478 0.00 0.00 0.00 4.79
3680 6832 4.545610 CAATGTGCATTAAGTTTGACCGT 58.454 39.130 0.00 0.00 0.00 4.83
3681 6833 4.846779 ATGTGCATTAAGTTTGACCGTT 57.153 36.364 0.00 0.00 0.00 4.44
3682 6834 4.217754 TGTGCATTAAGTTTGACCGTTC 57.782 40.909 0.00 0.00 0.00 3.95
3683 6835 3.880490 TGTGCATTAAGTTTGACCGTTCT 59.120 39.130 0.00 0.00 0.00 3.01
3684 6836 4.024387 TGTGCATTAAGTTTGACCGTTCTC 60.024 41.667 0.00 0.00 0.00 2.87
3685 6837 3.500680 TGCATTAAGTTTGACCGTTCTCC 59.499 43.478 0.00 0.00 0.00 3.71
3694 6846 4.386867 TTGACCGTTCTCCATAGTGATC 57.613 45.455 0.00 0.00 0.00 2.92
3700 6852 3.066900 CGTTCTCCATAGTGATCGGAAGT 59.933 47.826 0.00 0.00 0.00 3.01
3790 6942 8.718734 CCAAAAATACCTACTCAACTTCTGTAC 58.281 37.037 0.00 0.00 0.00 2.90
3926 7081 5.174216 CCGGAAAACGTTCAAATAAACCTTG 59.826 40.000 0.00 0.00 42.24 3.61
3967 7122 5.774498 AAATCAAACCCTGAACTCTCAAC 57.226 39.130 0.00 0.00 37.67 3.18
3988 7143 1.542915 CCCTGAAATCAGCACACCAAG 59.457 52.381 4.87 0.00 42.47 3.61
3993 7148 1.818642 AATCAGCACACCAAGCTCTC 58.181 50.000 0.00 0.00 41.14 3.20
3998 7153 1.350351 AGCACACCAAGCTCTCTGATT 59.650 47.619 0.00 0.00 38.01 2.57
4025 7180 6.418946 GGTCTATTTTGAACCTTGAGAGGAT 58.581 40.000 0.00 0.00 46.74 3.24
4082 7237 1.079819 TAGTTGCTCGCACTGCTCC 60.080 57.895 0.00 0.00 0.00 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.485830 ACAGACTATACATAATGCCTGTGT 57.514 37.500 0.00 0.00 33.05 3.72
1 2 6.986231 TCAACAGACTATACATAATGCCTGTG 59.014 38.462 0.00 0.00 34.35 3.66
2 3 7.124573 TCAACAGACTATACATAATGCCTGT 57.875 36.000 0.00 0.00 35.42 4.00
3 4 8.437360 TTTCAACAGACTATACATAATGCCTG 57.563 34.615 0.00 0.00 0.00 4.85
4 5 9.060347 CATTTCAACAGACTATACATAATGCCT 57.940 33.333 0.00 0.00 0.00 4.75
5 6 7.805071 GCATTTCAACAGACTATACATAATGCC 59.195 37.037 0.00 0.00 38.60 4.40
6 7 8.344831 TGCATTTCAACAGACTATACATAATGC 58.655 33.333 0.00 0.00 42.49 3.56
7 8 9.874215 CTGCATTTCAACAGACTATACATAATG 57.126 33.333 0.00 0.00 35.90 1.90
8 9 9.060347 CCTGCATTTCAACAGACTATACATAAT 57.940 33.333 0.00 0.00 35.90 1.28
9 10 7.012327 GCCTGCATTTCAACAGACTATACATAA 59.988 37.037 0.00 0.00 35.90 1.90
10 11 6.483307 GCCTGCATTTCAACAGACTATACATA 59.517 38.462 0.00 0.00 35.90 2.29
11 12 5.297776 GCCTGCATTTCAACAGACTATACAT 59.702 40.000 0.00 0.00 35.90 2.29
12 13 4.635765 GCCTGCATTTCAACAGACTATACA 59.364 41.667 0.00 0.00 35.90 2.29
13 14 4.878397 AGCCTGCATTTCAACAGACTATAC 59.122 41.667 0.00 0.00 35.90 1.47
14 15 5.102953 AGCCTGCATTTCAACAGACTATA 57.897 39.130 0.00 0.00 35.90 1.31
15 16 3.960571 AGCCTGCATTTCAACAGACTAT 58.039 40.909 0.00 0.00 35.90 2.12
16 17 3.423539 AGCCTGCATTTCAACAGACTA 57.576 42.857 0.00 0.00 35.90 2.59
17 18 2.283145 AGCCTGCATTTCAACAGACT 57.717 45.000 0.00 0.00 35.90 3.24
18 19 2.669364 CAAGCCTGCATTTCAACAGAC 58.331 47.619 0.00 0.00 35.90 3.51
31 32 6.524586 CGAAATAAAAGAACTTAGCAAGCCTG 59.475 38.462 0.00 0.00 0.00 4.85
32 33 6.206829 ACGAAATAAAAGAACTTAGCAAGCCT 59.793 34.615 0.00 0.00 0.00 4.58
33 34 6.379386 ACGAAATAAAAGAACTTAGCAAGCC 58.621 36.000 0.00 0.00 0.00 4.35
34 35 7.617325 GCAACGAAATAAAAGAACTTAGCAAGC 60.617 37.037 0.00 0.00 0.00 4.01
35 36 7.591426 AGCAACGAAATAAAAGAACTTAGCAAG 59.409 33.333 0.00 0.00 0.00 4.01
36 37 7.422399 AGCAACGAAATAAAAGAACTTAGCAA 58.578 30.769 0.00 0.00 0.00 3.91
37 38 6.966021 AGCAACGAAATAAAAGAACTTAGCA 58.034 32.000 0.00 0.00 0.00 3.49
38 39 9.000018 CATAGCAACGAAATAAAAGAACTTAGC 58.000 33.333 0.00 0.00 0.00 3.09
39 40 9.490663 CCATAGCAACGAAATAAAAGAACTTAG 57.509 33.333 0.00 0.00 0.00 2.18
40 41 9.005777 ACCATAGCAACGAAATAAAAGAACTTA 57.994 29.630 0.00 0.00 0.00 2.24
41 42 7.882179 ACCATAGCAACGAAATAAAAGAACTT 58.118 30.769 0.00 0.00 0.00 2.66
42 43 7.361799 GGACCATAGCAACGAAATAAAAGAACT 60.362 37.037 0.00 0.00 0.00 3.01
43 44 6.745907 GGACCATAGCAACGAAATAAAAGAAC 59.254 38.462 0.00 0.00 0.00 3.01
44 45 6.431543 TGGACCATAGCAACGAAATAAAAGAA 59.568 34.615 0.00 0.00 0.00 2.52
45 46 5.941058 TGGACCATAGCAACGAAATAAAAGA 59.059 36.000 0.00 0.00 0.00 2.52
46 47 6.189677 TGGACCATAGCAACGAAATAAAAG 57.810 37.500 0.00 0.00 0.00 2.27
47 48 6.767524 ATGGACCATAGCAACGAAATAAAA 57.232 33.333 4.75 0.00 0.00 1.52
48 49 8.458573 AATATGGACCATAGCAACGAAATAAA 57.541 30.769 18.90 0.00 29.42 1.40
49 50 8.458573 AAATATGGACCATAGCAACGAAATAA 57.541 30.769 18.90 0.00 29.42 1.40
50 51 8.458573 AAAATATGGACCATAGCAACGAAATA 57.541 30.769 18.90 0.00 29.42 1.40
51 52 6.959639 AAATATGGACCATAGCAACGAAAT 57.040 33.333 18.90 0.00 29.42 2.17
52 53 6.601613 AGAAAATATGGACCATAGCAACGAAA 59.398 34.615 18.90 0.00 29.42 3.46
53 54 6.038161 CAGAAAATATGGACCATAGCAACGAA 59.962 38.462 18.90 0.00 29.42 3.85
54 55 5.527214 CAGAAAATATGGACCATAGCAACGA 59.473 40.000 18.90 0.00 29.42 3.85
55 56 5.527214 TCAGAAAATATGGACCATAGCAACG 59.473 40.000 18.90 6.76 29.42 4.10
56 57 6.942532 TCAGAAAATATGGACCATAGCAAC 57.057 37.500 18.90 10.70 29.42 4.17
57 58 7.068593 CCTTTCAGAAAATATGGACCATAGCAA 59.931 37.037 18.90 0.00 29.42 3.91
58 59 6.547141 CCTTTCAGAAAATATGGACCATAGCA 59.453 38.462 18.90 0.00 29.42 3.49
59 60 6.547510 ACCTTTCAGAAAATATGGACCATAGC 59.452 38.462 18.90 8.80 29.42 2.97
60 61 8.525290 AACCTTTCAGAAAATATGGACCATAG 57.475 34.615 18.90 5.26 29.42 2.23
61 62 8.893563 AAACCTTTCAGAAAATATGGACCATA 57.106 30.769 16.59 16.59 0.00 2.74
62 63 7.675619 AGAAACCTTTCAGAAAATATGGACCAT 59.324 33.333 12.67 12.67 39.61 3.55
63 64 7.010160 AGAAACCTTTCAGAAAATATGGACCA 58.990 34.615 0.00 0.00 39.61 4.02
64 65 7.468141 AGAAACCTTTCAGAAAATATGGACC 57.532 36.000 6.02 0.00 39.61 4.46
65 66 9.232473 AGTAGAAACCTTTCAGAAAATATGGAC 57.768 33.333 6.02 0.00 39.61 4.02
108 109 1.666311 CGGCGCCCGTTCATTTAAAAA 60.666 47.619 23.46 0.00 42.73 1.94
109 110 0.109689 CGGCGCCCGTTCATTTAAAA 60.110 50.000 23.46 0.00 42.73 1.52
110 111 1.502640 CGGCGCCCGTTCATTTAAA 59.497 52.632 23.46 0.00 42.73 1.52
111 112 3.179481 CGGCGCCCGTTCATTTAA 58.821 55.556 23.46 0.00 42.73 1.52
121 122 2.966182 ATTAACTAGACGCGGCGCCC 62.966 60.000 27.87 18.35 0.00 6.13
122 123 0.318107 TATTAACTAGACGCGGCGCC 60.318 55.000 27.87 19.07 0.00 6.53
123 124 1.480205 TTATTAACTAGACGCGGCGC 58.520 50.000 24.21 24.21 0.00 6.53
124 125 3.111098 AGTTTATTAACTAGACGCGGCG 58.889 45.455 22.36 22.36 42.73 6.46
125 126 4.328169 ACAAGTTTATTAACTAGACGCGGC 59.672 41.667 12.47 7.86 43.74 6.53
126 127 5.574055 TCACAAGTTTATTAACTAGACGCGG 59.426 40.000 12.47 0.00 43.74 6.46
127 128 6.525628 TCTCACAAGTTTATTAACTAGACGCG 59.474 38.462 3.53 3.53 43.74 6.01
128 129 7.201418 GGTCTCACAAGTTTATTAACTAGACGC 60.201 40.741 14.46 7.80 43.74 5.19
129 130 7.275123 GGGTCTCACAAGTTTATTAACTAGACG 59.725 40.741 14.46 2.29 43.74 4.18
130 131 7.548427 GGGGTCTCACAAGTTTATTAACTAGAC 59.452 40.741 13.29 13.29 43.74 2.59
131 132 7.310858 GGGGGTCTCACAAGTTTATTAACTAGA 60.311 40.741 0.00 0.00 43.74 2.43
132 133 6.822170 GGGGGTCTCACAAGTTTATTAACTAG 59.178 42.308 0.00 0.00 43.74 2.57
133 134 6.272792 TGGGGGTCTCACAAGTTTATTAACTA 59.727 38.462 0.00 0.00 43.74 2.24
134 135 5.073965 TGGGGGTCTCACAAGTTTATTAACT 59.926 40.000 0.00 0.00 46.44 2.24
135 136 5.182570 GTGGGGGTCTCACAAGTTTATTAAC 59.817 44.000 0.00 0.00 35.39 2.01
136 137 5.318630 GTGGGGGTCTCACAAGTTTATTAA 58.681 41.667 0.00 0.00 35.39 1.40
137 138 4.263594 GGTGGGGGTCTCACAAGTTTATTA 60.264 45.833 0.16 0.00 36.90 0.98
143 144 2.154074 GGGTGGGGGTCTCACAAGT 61.154 63.158 0.16 0.00 36.90 3.16
146 147 4.242586 TCGGGTGGGGGTCTCACA 62.243 66.667 0.16 0.00 36.90 3.58
153 154 0.468400 TTTTGTTTCTCGGGTGGGGG 60.468 55.000 0.00 0.00 0.00 5.40
157 158 2.294074 TGGTCTTTTGTTTCTCGGGTG 58.706 47.619 0.00 0.00 0.00 4.61
158 159 2.686405 GTTGGTCTTTTGTTTCTCGGGT 59.314 45.455 0.00 0.00 0.00 5.28
159 160 2.286772 CGTTGGTCTTTTGTTTCTCGGG 60.287 50.000 0.00 0.00 0.00 5.14
161 162 3.604392 GACGTTGGTCTTTTGTTTCTCG 58.396 45.455 0.00 0.00 40.15 4.04
163 164 2.353579 CCGACGTTGGTCTTTTGTTTCT 59.646 45.455 14.24 0.00 41.16 2.52
164 165 2.711885 CCGACGTTGGTCTTTTGTTTC 58.288 47.619 14.24 0.00 41.16 2.78
166 167 0.379316 GCCGACGTTGGTCTTTTGTT 59.621 50.000 22.97 0.00 41.16 2.83
168 169 0.041312 CAGCCGACGTTGGTCTTTTG 60.041 55.000 22.97 10.12 41.16 2.44
170 171 2.251642 GCAGCCGACGTTGGTCTTT 61.252 57.895 22.97 4.26 41.16 2.52
172 173 3.240134 ATGCAGCCGACGTTGGTCT 62.240 57.895 22.97 16.77 41.16 3.85
173 174 2.742372 ATGCAGCCGACGTTGGTC 60.742 61.111 22.97 14.83 39.89 4.02
174 175 3.049674 CATGCAGCCGACGTTGGT 61.050 61.111 22.97 7.36 0.00 3.67
175 176 3.803082 CCATGCAGCCGACGTTGG 61.803 66.667 18.24 18.24 0.00 3.77
176 177 3.803082 CCCATGCAGCCGACGTTG 61.803 66.667 0.00 0.00 0.00 4.10
177 178 3.545124 TTCCCATGCAGCCGACGTT 62.545 57.895 0.00 0.00 0.00 3.99
178 179 4.015406 TTCCCATGCAGCCGACGT 62.015 61.111 0.00 0.00 0.00 4.34
179 180 3.499737 GTTCCCATGCAGCCGACG 61.500 66.667 0.00 0.00 0.00 5.12
180 181 1.675641 AAGTTCCCATGCAGCCGAC 60.676 57.895 0.00 0.00 0.00 4.79
181 182 1.675310 CAAGTTCCCATGCAGCCGA 60.675 57.895 0.00 0.00 0.00 5.54
182 183 1.243342 TTCAAGTTCCCATGCAGCCG 61.243 55.000 0.00 0.00 0.00 5.52
183 184 0.529378 CTTCAAGTTCCCATGCAGCC 59.471 55.000 0.00 0.00 0.00 4.85
184 185 0.108945 GCTTCAAGTTCCCATGCAGC 60.109 55.000 0.00 0.00 0.00 5.25
185 186 1.250328 TGCTTCAAGTTCCCATGCAG 58.750 50.000 0.00 0.00 0.00 4.41
207 208 5.080337 TGGGCATAAAAACTGGATTGTGTA 58.920 37.500 0.00 0.00 0.00 2.90
210 211 7.436320 AATATGGGCATAAAAACTGGATTGT 57.564 32.000 0.00 0.00 0.00 2.71
211 212 7.254863 GCAAATATGGGCATAAAAACTGGATTG 60.255 37.037 0.00 0.00 0.00 2.67
227 228 5.344665 CGTGTTGTTTTACTGCAAATATGGG 59.655 40.000 0.00 0.00 0.00 4.00
250 251 5.613358 AGGCTTGAAACTGAGTTATTTCG 57.387 39.130 0.00 0.00 37.59 3.46
252 253 5.011023 CCCAAGGCTTGAAACTGAGTTATTT 59.989 40.000 28.18 0.00 0.00 1.40
253 254 4.524328 CCCAAGGCTTGAAACTGAGTTATT 59.476 41.667 28.18 0.00 0.00 1.40
254 255 4.082125 CCCAAGGCTTGAAACTGAGTTAT 58.918 43.478 28.18 0.00 0.00 1.89
256 257 2.310538 CCCAAGGCTTGAAACTGAGTT 58.689 47.619 28.18 0.00 0.00 3.01
257 258 1.215423 ACCCAAGGCTTGAAACTGAGT 59.785 47.619 28.18 10.33 0.00 3.41
258 259 1.986882 ACCCAAGGCTTGAAACTGAG 58.013 50.000 28.18 9.43 0.00 3.35
259 260 2.808933 CGTACCCAAGGCTTGAAACTGA 60.809 50.000 28.18 4.65 0.00 3.41
260 261 1.535462 CGTACCCAAGGCTTGAAACTG 59.465 52.381 28.18 10.88 0.00 3.16
262 263 0.240145 GCGTACCCAAGGCTTGAAAC 59.760 55.000 28.18 19.41 36.05 2.78
263 264 0.179015 TGCGTACCCAAGGCTTGAAA 60.179 50.000 28.18 10.15 39.75 2.69
264 265 0.887387 GTGCGTACCCAAGGCTTGAA 60.887 55.000 28.18 10.51 39.75 2.69
265 266 1.302192 GTGCGTACCCAAGGCTTGA 60.302 57.895 28.18 5.88 39.75 3.02
266 267 0.889186 AAGTGCGTACCCAAGGCTTG 60.889 55.000 20.31 20.31 39.75 4.01
267 268 0.605589 GAAGTGCGTACCCAAGGCTT 60.606 55.000 0.00 0.00 39.75 4.35
268 269 1.003718 GAAGTGCGTACCCAAGGCT 60.004 57.895 0.00 0.00 39.75 4.58
269 270 2.038837 GGAAGTGCGTACCCAAGGC 61.039 63.158 0.00 0.00 39.48 4.35
270 271 0.035439 ATGGAAGTGCGTACCCAAGG 60.035 55.000 5.79 0.00 31.77 3.61
271 272 1.066143 AGATGGAAGTGCGTACCCAAG 60.066 52.381 5.79 0.00 31.77 3.61
272 273 0.981183 AGATGGAAGTGCGTACCCAA 59.019 50.000 5.79 0.00 31.77 4.12
273 274 1.479323 GTAGATGGAAGTGCGTACCCA 59.521 52.381 0.00 1.66 0.00 4.51
274 275 1.202498 GGTAGATGGAAGTGCGTACCC 60.202 57.143 0.00 0.00 0.00 3.69
275 276 1.479323 TGGTAGATGGAAGTGCGTACC 59.521 52.381 0.00 0.00 0.00 3.34
276 277 2.928116 GTTGGTAGATGGAAGTGCGTAC 59.072 50.000 0.00 0.00 0.00 3.67
277 278 2.563620 TGTTGGTAGATGGAAGTGCGTA 59.436 45.455 0.00 0.00 0.00 4.42
278 279 1.346395 TGTTGGTAGATGGAAGTGCGT 59.654 47.619 0.00 0.00 0.00 5.24
279 280 1.732259 GTGTTGGTAGATGGAAGTGCG 59.268 52.381 0.00 0.00 0.00 5.34
286 287 1.468520 CGGCAAAGTGTTGGTAGATGG 59.531 52.381 0.00 0.00 35.10 3.51
321 324 8.076910 TGCCACTTGTATTTTGAATGGAATAT 57.923 30.769 0.00 0.00 0.00 1.28
323 326 6.357579 TGCCACTTGTATTTTGAATGGAAT 57.642 33.333 0.00 0.00 0.00 3.01
324 327 5.798125 TGCCACTTGTATTTTGAATGGAA 57.202 34.783 0.00 0.00 0.00 3.53
341 344 3.253432 ACAGCTAGCTTAAAGTTTGCCAC 59.747 43.478 16.46 0.00 28.65 5.01
343 346 3.826466 CACAGCTAGCTTAAAGTTTGCC 58.174 45.455 16.46 0.00 28.65 4.52
344 347 3.237628 GCACAGCTAGCTTAAAGTTTGC 58.762 45.455 16.46 10.97 0.00 3.68
351 354 4.346709 TGTATATGGGCACAGCTAGCTTAA 59.653 41.667 16.46 0.00 0.00 1.85
362 366 5.964958 ACAAGCATATTGTATATGGGCAC 57.035 39.130 8.34 0.00 0.00 5.01
365 369 8.846943 TTGAGTACAAGCATATTGTATATGGG 57.153 34.615 3.98 0.00 37.25 4.00
393 397 9.970395 ATAATGTTCGTATATTCGACCTTGTAA 57.030 29.630 3.72 0.00 39.58 2.41
459 2273 4.439057 GTGACGAGTATAAGCAATCCCAA 58.561 43.478 0.00 0.00 0.00 4.12
460 2274 3.181469 GGTGACGAGTATAAGCAATCCCA 60.181 47.826 0.00 0.00 0.00 4.37
477 2291 3.934068 TGTTATTTTCCCTCTCGGTGAC 58.066 45.455 0.00 0.00 0.00 3.67
479 2293 5.897377 AAATGTTATTTTCCCTCTCGGTG 57.103 39.130 0.00 0.00 0.00 4.94
480 2294 9.862149 AATATAAATGTTATTTTCCCTCTCGGT 57.138 29.630 0.00 0.00 0.00 4.69
527 2341 8.203637 CTGCAAGAAAGAAATAGTGTGAACACC 61.204 40.741 9.91 0.00 42.00 4.16
570 2384 9.674824 CTTCTGTTCGTATCCGTAAACTAATAT 57.325 33.333 0.00 0.00 35.01 1.28
572 2386 7.765307 TCTTCTGTTCGTATCCGTAAACTAAT 58.235 34.615 0.00 0.00 35.01 1.73
574 2388 6.741992 TCTTCTGTTCGTATCCGTAAACTA 57.258 37.500 0.00 0.00 35.01 2.24
576 2390 6.882458 AATCTTCTGTTCGTATCCGTAAAC 57.118 37.500 0.00 0.00 35.01 2.01
578 2392 7.988737 TCTTAATCTTCTGTTCGTATCCGTAA 58.011 34.615 0.00 0.00 35.01 3.18
580 2394 6.446781 TCTTAATCTTCTGTTCGTATCCGT 57.553 37.500 0.00 0.00 35.01 4.69
581 2395 9.627395 AATATCTTAATCTTCTGTTCGTATCCG 57.373 33.333 0.00 0.00 0.00 4.18
586 2400 9.838339 ATGGAAATATCTTAATCTTCTGTTCGT 57.162 29.630 0.00 0.00 0.00 3.85
611 2463 0.679002 GCACAGCATCCCAGTCACAT 60.679 55.000 0.00 0.00 0.00 3.21
861 2734 1.878953 TTTGACCGAGTTCTTGCCTC 58.121 50.000 0.00 0.00 0.00 4.70
905 2780 1.350684 TGCCTACTTGGATGTGCTCAA 59.649 47.619 0.00 0.00 38.35 3.02
973 2848 1.214589 CAAGGACGGTGGGAGTACG 59.785 63.158 0.00 0.00 0.00 3.67
991 2866 6.920569 TCCAACAAAGAACTACACTCTTTC 57.079 37.500 0.00 0.00 40.37 2.62
1002 2877 8.451748 GTCTACTAATCCAATCCAACAAAGAAC 58.548 37.037 0.00 0.00 0.00 3.01
1015 2890 7.284489 GGCATAAATGTTGGTCTACTAATCCAA 59.716 37.037 0.00 0.00 38.65 3.53
1016 2891 6.770785 GGCATAAATGTTGGTCTACTAATCCA 59.229 38.462 0.00 0.00 0.00 3.41
1018 2893 7.801716 TGGCATAAATGTTGGTCTACTAATC 57.198 36.000 0.00 0.00 0.00 1.75
1019 2894 7.998383 TGATGGCATAAATGTTGGTCTACTAAT 59.002 33.333 0.00 0.00 0.00 1.73
1020 2895 7.342581 TGATGGCATAAATGTTGGTCTACTAA 58.657 34.615 0.00 0.00 0.00 2.24
1021 2896 6.894682 TGATGGCATAAATGTTGGTCTACTA 58.105 36.000 0.00 0.00 0.00 1.82
1023 2898 6.449635 TTGATGGCATAAATGTTGGTCTAC 57.550 37.500 0.00 0.00 0.00 2.59
1145 3052 9.636789 AACTTTGTTGTAGGGTTAAACTATCTT 57.363 29.630 0.00 0.00 0.00 2.40
1172 3079 7.495055 TCCGTCTTTAAAAGAGTGTACTTTCT 58.505 34.615 0.00 0.00 38.86 2.52
1191 3098 4.757019 TCATGTAGTACTCTCTCCGTCT 57.243 45.455 0.00 0.00 0.00 4.18
1196 3103 3.891977 TGGCCATCATGTAGTACTCTCTC 59.108 47.826 0.00 0.00 0.00 3.20
1248 3155 5.105997 CCGGCCATTACATAGTACTAGTACC 60.106 48.000 25.97 11.01 36.75 3.34
1554 3474 1.139058 CCAAGGCGGAGTAGCATAAGT 59.861 52.381 0.00 0.00 39.27 2.24
1557 3477 0.464036 CACCAAGGCGGAGTAGCATA 59.536 55.000 0.00 0.00 39.27 3.14
1593 3513 4.117661 GCCTCCGTCGACGAAGCT 62.118 66.667 37.65 0.00 43.02 3.74
1620 3540 4.267536 CCACATCATTTGTCCTCATGACT 58.732 43.478 0.00 0.00 44.75 3.41
1633 3553 1.078497 TCGCGAAGGCCACATCATT 60.078 52.632 6.20 0.00 35.02 2.57
1686 3606 2.286523 CCCCTCTGAGCCGTCAACT 61.287 63.158 0.00 0.00 30.14 3.16
1868 3788 0.970640 TAGTGCGCTAAGGTTCACCA 59.029 50.000 9.73 0.00 38.89 4.17
2134 4054 2.280524 TTTGTCACCCACGCCTCG 60.281 61.111 0.00 0.00 0.00 4.63
2138 4058 0.951040 CTCCTCTTTGTCACCCACGC 60.951 60.000 0.00 0.00 0.00 5.34
2141 4061 1.056660 GTCCTCCTCTTTGTCACCCA 58.943 55.000 0.00 0.00 0.00 4.51
2142 4062 1.353091 AGTCCTCCTCTTTGTCACCC 58.647 55.000 0.00 0.00 0.00 4.61
2221 4141 0.030638 ACGGCTTTGATTGTGTGTGC 59.969 50.000 0.00 0.00 0.00 4.57
2292 4217 7.015584 TGCGGCATATATATTCCATCTAGATGT 59.984 37.037 27.03 14.21 37.11 3.06
2299 4224 5.007039 CAGTGTGCGGCATATATATTCCATC 59.993 44.000 5.72 3.70 0.00 3.51
2328 5023 0.035820 TACAAGCAATGGTCGGACCC 60.036 55.000 23.81 8.77 37.50 4.46
2659 5792 0.179020 GTCCCAATGCATCGGATCCA 60.179 55.000 13.41 0.00 0.00 3.41
2735 5868 3.035363 TGGTGTGTACTCAAAGTCTCCA 58.965 45.455 0.00 0.00 0.00 3.86
2872 6005 2.818169 GCCATATCCAGGTCCGCCA 61.818 63.158 0.00 0.00 37.19 5.69
2897 6030 2.256158 CGCGAGGTTACCGTGACA 59.744 61.111 0.00 0.00 39.61 3.58
2974 6107 2.618709 GGTGTAACATAAGCTGATGGGC 59.381 50.000 15.82 5.56 39.98 5.36
3056 6189 3.146066 ACGCACATTGATTTGGTACACT 58.854 40.909 0.00 0.00 39.29 3.55
3165 6303 4.584327 AATACAAAAGTTGAGTGGGCAC 57.416 40.909 0.00 0.00 0.00 5.01
3170 6308 9.260002 AGGCAAAATTAATACAAAAGTTGAGTG 57.740 29.630 0.00 0.00 0.00 3.51
3202 6340 8.193250 TCGCTTTCTACTTATATTGGTTTGAC 57.807 34.615 0.00 0.00 0.00 3.18
3276 6414 1.751927 CATTGGCACCTCTGGGAGC 60.752 63.158 0.00 0.00 46.22 4.70
3338 6477 2.725203 TTTTCTCCGGTGGTGGCGAG 62.725 60.000 0.00 0.00 0.00 5.03
3339 6478 2.809307 TTTTCTCCGGTGGTGGCGA 61.809 57.895 0.00 0.00 0.00 5.54
3341 6480 2.265904 GGTTTTCTCCGGTGGTGGC 61.266 63.158 0.00 0.00 0.00 5.01
3342 6481 0.889186 CTGGTTTTCTCCGGTGGTGG 60.889 60.000 0.00 0.00 0.00 4.61
3344 6483 1.228154 GCTGGTTTTCTCCGGTGGT 60.228 57.895 0.00 0.00 36.33 4.16
3349 6489 0.887387 TTTCCGGCTGGTTTTCTCCG 60.887 55.000 12.43 0.00 41.41 4.63
3425 6565 0.799917 CTCACCGCTGACATGTCTCG 60.800 60.000 25.55 24.81 0.00 4.04
3427 6567 1.079543 GCTCACCGCTGACATGTCT 60.080 57.895 25.55 2.94 35.14 3.41
3446 6594 3.102097 GCTTGTAGCATGGACGGC 58.898 61.111 0.00 0.00 41.89 5.68
3457 6605 3.368427 GGAGAGTGCTACACATGCTTGTA 60.368 47.826 4.73 0.00 36.74 2.41
3507 6659 7.549488 GGAACGGAGGGAGTATATATCAAAATG 59.451 40.741 0.00 0.00 0.00 2.32
3511 6663 5.647230 TGGAACGGAGGGAGTATATATCAA 58.353 41.667 0.00 0.00 0.00 2.57
3513 6665 6.600882 TTTGGAACGGAGGGAGTATATATC 57.399 41.667 0.00 0.00 0.00 1.63
3514 6666 7.569599 AATTTGGAACGGAGGGAGTATATAT 57.430 36.000 0.00 0.00 0.00 0.86
3515 6667 7.731688 AGTAATTTGGAACGGAGGGAGTATATA 59.268 37.037 0.00 0.00 0.00 0.86
3518 6670 4.720273 AGTAATTTGGAACGGAGGGAGTAT 59.280 41.667 0.00 0.00 0.00 2.12
3519 6671 4.098894 AGTAATTTGGAACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
3521 6673 3.629142 AGTAATTTGGAACGGAGGGAG 57.371 47.619 0.00 0.00 0.00 4.30
3523 6675 3.418047 ACAAGTAATTTGGAACGGAGGG 58.582 45.455 0.00 0.00 41.25 4.30
3525 6677 3.424433 GCGACAAGTAATTTGGAACGGAG 60.424 47.826 0.00 0.00 41.25 4.63
3527 6679 2.224549 TGCGACAAGTAATTTGGAACGG 59.775 45.455 0.00 0.00 41.25 4.44
3528 6680 3.185594 TCTGCGACAAGTAATTTGGAACG 59.814 43.478 0.00 0.00 41.25 3.95
3529 6681 4.742438 TCTGCGACAAGTAATTTGGAAC 57.258 40.909 0.00 0.00 41.25 3.62
3530 6682 5.759506 TTTCTGCGACAAGTAATTTGGAA 57.240 34.783 0.00 0.00 41.25 3.53
3531 6683 5.335583 CCATTTCTGCGACAAGTAATTTGGA 60.336 40.000 0.00 0.00 41.25 3.53
3532 6684 4.858692 CCATTTCTGCGACAAGTAATTTGG 59.141 41.667 0.00 0.00 41.25 3.28
3534 6686 5.957842 TCCATTTCTGCGACAAGTAATTT 57.042 34.783 0.00 0.00 0.00 1.82
3535 6687 5.415701 ACATCCATTTCTGCGACAAGTAATT 59.584 36.000 0.00 0.00 0.00 1.40
3536 6688 4.943705 ACATCCATTTCTGCGACAAGTAAT 59.056 37.500 0.00 0.00 0.00 1.89
3537 6689 4.323417 ACATCCATTTCTGCGACAAGTAA 58.677 39.130 0.00 0.00 0.00 2.24
3539 6691 2.783135 ACATCCATTTCTGCGACAAGT 58.217 42.857 0.00 0.00 0.00 3.16
3540 6692 4.813161 AGATACATCCATTTCTGCGACAAG 59.187 41.667 0.00 0.00 0.00 3.16
3541 6693 4.769688 AGATACATCCATTTCTGCGACAA 58.230 39.130 0.00 0.00 0.00 3.18
3543 6695 5.773575 TCTAGATACATCCATTTCTGCGAC 58.226 41.667 0.00 0.00 0.00 5.19
3544 6696 6.040955 AGTTCTAGATACATCCATTTCTGCGA 59.959 38.462 0.00 0.00 0.00 5.10
3545 6697 6.219473 AGTTCTAGATACATCCATTTCTGCG 58.781 40.000 0.00 0.00 0.00 5.18
3546 6698 9.547753 TTTAGTTCTAGATACATCCATTTCTGC 57.452 33.333 0.00 0.00 0.00 4.26
3590 6742 9.976255 CGTTCGGAATTACTTGTCATAAAAATA 57.024 29.630 0.00 0.00 0.00 1.40
3591 6743 7.966204 CCGTTCGGAATTACTTGTCATAAAAAT 59.034 33.333 5.19 0.00 0.00 1.82
3592 6744 7.172875 TCCGTTCGGAATTACTTGTCATAAAAA 59.827 33.333 11.66 0.00 0.00 1.94
3593 6745 6.649973 TCCGTTCGGAATTACTTGTCATAAAA 59.350 34.615 11.66 0.00 0.00 1.52
3594 6746 6.164876 TCCGTTCGGAATTACTTGTCATAAA 58.835 36.000 11.66 0.00 0.00 1.40
3595 6747 5.722263 TCCGTTCGGAATTACTTGTCATAA 58.278 37.500 11.66 0.00 0.00 1.90
3596 6748 5.327616 TCCGTTCGGAATTACTTGTCATA 57.672 39.130 11.66 0.00 0.00 2.15
3597 6749 4.181578 CTCCGTTCGGAATTACTTGTCAT 58.818 43.478 14.79 0.00 33.41 3.06
3598 6750 3.581755 CTCCGTTCGGAATTACTTGTCA 58.418 45.455 14.79 0.00 33.41 3.58
3599 6751 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
3600 6752 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
3601 6753 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
3602 6754 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
3603 6755 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
3604 6756 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
3605 6757 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
3606 6758 1.755380 CTACTCCCTCCGTTCGGAATT 59.245 52.381 14.79 0.00 33.41 2.17
3607 6759 1.341778 ACTACTCCCTCCGTTCGGAAT 60.342 52.381 14.79 2.09 33.41 3.01
3608 6760 0.038744 ACTACTCCCTCCGTTCGGAA 59.961 55.000 14.79 0.04 33.41 4.30
3609 6761 0.911769 TACTACTCCCTCCGTTCGGA 59.088 55.000 13.34 13.34 0.00 4.55
3610 6762 1.878734 GATACTACTCCCTCCGTTCGG 59.121 57.143 4.74 4.74 0.00 4.30
3611 6763 2.848691 AGATACTACTCCCTCCGTTCG 58.151 52.381 0.00 0.00 0.00 3.95
3612 6764 5.008514 GTGTTAGATACTACTCCCTCCGTTC 59.991 48.000 0.00 0.00 0.00 3.95
3613 6765 4.886489 GTGTTAGATACTACTCCCTCCGTT 59.114 45.833 0.00 0.00 0.00 4.44
3614 6766 4.459330 GTGTTAGATACTACTCCCTCCGT 58.541 47.826 0.00 0.00 0.00 4.69
3615 6767 3.819902 GGTGTTAGATACTACTCCCTCCG 59.180 52.174 0.00 0.00 0.00 4.63
3616 6768 4.151121 GGGTGTTAGATACTACTCCCTCC 58.849 52.174 0.00 0.00 42.25 4.30
3617 6769 3.819902 CGGGTGTTAGATACTACTCCCTC 59.180 52.174 0.00 0.00 42.97 4.30
3618 6770 3.830121 CGGGTGTTAGATACTACTCCCT 58.170 50.000 0.00 0.00 42.97 4.20
3619 6771 2.295629 GCGGGTGTTAGATACTACTCCC 59.704 54.545 0.00 0.00 42.15 4.30
3620 6772 2.954318 TGCGGGTGTTAGATACTACTCC 59.046 50.000 0.00 0.00 0.00 3.85
3621 6773 4.547532 CATGCGGGTGTTAGATACTACTC 58.452 47.826 0.00 0.00 0.00 2.59
3622 6774 3.321111 CCATGCGGGTGTTAGATACTACT 59.679 47.826 0.00 0.00 0.00 2.57
3623 6775 3.650139 CCATGCGGGTGTTAGATACTAC 58.350 50.000 0.00 0.00 0.00 2.73
3625 6777 2.910688 CCATGCGGGTGTTAGATACT 57.089 50.000 0.00 0.00 0.00 2.12
3646 6798 0.238289 GCACATTGGTTGTCTGGTCG 59.762 55.000 0.00 0.00 36.00 4.79
3668 6820 5.244402 TCACTATGGAGAACGGTCAAACTTA 59.756 40.000 1.87 0.00 0.00 2.24
3669 6821 4.039973 TCACTATGGAGAACGGTCAAACTT 59.960 41.667 1.87 0.00 0.00 2.66
3670 6822 3.576982 TCACTATGGAGAACGGTCAAACT 59.423 43.478 1.87 0.00 0.00 2.66
3671 6823 3.921677 TCACTATGGAGAACGGTCAAAC 58.078 45.455 1.87 0.00 0.00 2.93
3672 6824 4.676986 CGATCACTATGGAGAACGGTCAAA 60.677 45.833 1.87 0.00 0.00 2.69
3673 6825 3.181490 CGATCACTATGGAGAACGGTCAA 60.181 47.826 1.87 0.00 0.00 3.18
3674 6826 2.357952 CGATCACTATGGAGAACGGTCA 59.642 50.000 1.87 0.00 0.00 4.02
3675 6827 2.287668 CCGATCACTATGGAGAACGGTC 60.288 54.545 14.84 0.00 41.05 4.79
3676 6828 1.681793 CCGATCACTATGGAGAACGGT 59.318 52.381 14.84 0.00 41.05 4.83
3677 6829 1.954382 TCCGATCACTATGGAGAACGG 59.046 52.381 16.42 16.42 44.76 4.44
3678 6830 3.066900 ACTTCCGATCACTATGGAGAACG 59.933 47.826 0.00 0.00 32.39 3.95
3679 6831 4.657436 ACTTCCGATCACTATGGAGAAC 57.343 45.455 0.00 0.00 32.39 3.01
3680 6832 5.068723 GGTAACTTCCGATCACTATGGAGAA 59.931 44.000 0.00 0.00 32.39 2.87
3681 6833 4.583489 GGTAACTTCCGATCACTATGGAGA 59.417 45.833 0.00 0.00 32.39 3.71
3682 6834 4.262079 GGGTAACTTCCGATCACTATGGAG 60.262 50.000 0.00 0.00 32.39 3.86
3683 6835 3.640029 GGGTAACTTCCGATCACTATGGA 59.360 47.826 0.00 0.00 0.00 3.41
3684 6836 3.386726 TGGGTAACTTCCGATCACTATGG 59.613 47.826 0.00 0.00 0.00 2.74
3685 6837 4.665833 TGGGTAACTTCCGATCACTATG 57.334 45.455 0.00 0.00 0.00 2.23
3694 6846 6.915349 TGTAAATGAAATTGGGTAACTTCCG 58.085 36.000 0.00 0.00 36.10 4.30
3743 6895 0.232303 GTGCAGAGAACGGTCAAACG 59.768 55.000 1.87 0.00 40.31 3.60
3790 6942 9.603921 ATGGTTTGATATTCAAGGCAAAATTAG 57.396 29.630 0.00 0.00 37.70 1.73
3867 7021 9.103048 GTTGACGTACATGTCTCTTTATTTTTG 57.897 33.333 0.00 0.00 39.64 2.44
3873 7027 4.322198 GGGGTTGACGTACATGTCTCTTTA 60.322 45.833 0.00 0.00 39.64 1.85
3884 7038 1.445871 GGTTGATGGGGTTGACGTAC 58.554 55.000 0.00 0.00 0.00 3.67
3888 7042 0.250989 TTCCGGTTGATGGGGTTGAC 60.251 55.000 0.00 0.00 0.00 3.18
3967 7122 0.251297 TGGTGTGCTGATTTCAGGGG 60.251 55.000 9.49 0.00 43.94 4.79
3988 7143 4.329462 AAATAGACCGGAATCAGAGAGC 57.671 45.455 9.46 0.00 0.00 4.09
3993 7148 5.186198 AGGTTCAAAATAGACCGGAATCAG 58.814 41.667 9.46 0.00 0.00 2.90
3998 7153 4.285003 TCTCAAGGTTCAAAATAGACCGGA 59.715 41.667 9.46 0.00 0.00 5.14
4062 7217 1.678269 GAGCAGTGCGAGCAACTACG 61.678 60.000 10.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.