Multiple sequence alignment - TraesCS2B01G002300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G002300 chr2B 100.000 2375 0 0 1 2375 1454224 1451850 0.000000e+00 4386.0
1 TraesCS2B01G002300 chr2B 98.030 203 4 0 2173 2375 234527402 234527604 1.040000e-93 353.0
2 TraesCS2B01G002300 chr2B 98.030 203 4 0 2173 2375 449186456 449186658 1.040000e-93 353.0
3 TraesCS2B01G002300 chr3B 97.520 2177 52 2 1 2175 201615152 201617328 0.000000e+00 3720.0
4 TraesCS2B01G002300 chr3B 97.388 268 5 2 1353 1618 524468319 524468052 2.780000e-124 455.0
5 TraesCS2B01G002300 chr3B 98.522 203 3 0 2173 2375 92283010 92283212 2.240000e-95 359.0
6 TraesCS2B01G002300 chr3B 100.000 63 0 0 1927 1989 21185264 21185202 1.490000e-22 117.0
7 TraesCS2B01G002300 chr5B 97.475 2178 52 2 1 2175 44989096 44991273 0.000000e+00 3714.0
8 TraesCS2B01G002300 chr5B 97.290 2177 57 2 1 2175 127808629 127810805 0.000000e+00 3692.0
9 TraesCS2B01G002300 chr1B 97.290 2177 56 3 1 2175 638728834 638731009 0.000000e+00 3690.0
10 TraesCS2B01G002300 chr1B 96.474 2184 70 4 1 2178 135053759 135051577 0.000000e+00 3600.0
11 TraesCS2B01G002300 chr7B 97.886 1419 29 1 1 1418 662726600 662728018 0.000000e+00 2453.0
12 TraesCS2B01G002300 chr7B 94.422 502 21 2 1675 2175 47246657 47247152 0.000000e+00 765.0
13 TraesCS2B01G002300 chr3D 97.750 1422 31 1 1 1421 589263330 589261909 0.000000e+00 2447.0
14 TraesCS2B01G002300 chr3A 97.750 1422 31 1 1 1421 66004937 66003516 0.000000e+00 2447.0
15 TraesCS2B01G002300 chr3A 98.030 203 4 0 2173 2375 593314983 593314781 1.040000e-93 353.0
16 TraesCS2B01G002300 chr6D 97.679 1422 32 1 1 1421 389245626 389244205 0.000000e+00 2442.0
17 TraesCS2B01G002300 chr6D 98.030 203 4 0 2173 2375 458914589 458914791 1.040000e-93 353.0
18 TraesCS2B01G002300 chr2A 96.628 771 24 2 1409 2178 53948986 53948217 0.000000e+00 1279.0
19 TraesCS2B01G002300 chrUn 98.030 203 4 0 2173 2375 414425476 414425678 1.040000e-93 353.0
20 TraesCS2B01G002300 chrUn 97.537 203 5 0 2173 2375 182429353 182429151 4.860000e-92 348.0
21 TraesCS2B01G002300 chrUn 97.537 203 5 0 2173 2375 231556435 231556637 4.860000e-92 348.0
22 TraesCS2B01G002300 chr7A 98.030 203 4 0 2173 2375 60217047 60217249 1.040000e-93 353.0
23 TraesCS2B01G002300 chr7A 97.080 137 4 0 1839 1975 659649765 659649901 5.110000e-57 231.0
24 TraesCS2B01G002300 chr4B 95.556 45 1 1 1864 1907 104460381 104460425 1.180000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G002300 chr2B 1451850 1454224 2374 True 4386 4386 100.000 1 2375 1 chr2B.!!$R1 2374
1 TraesCS2B01G002300 chr3B 201615152 201617328 2176 False 3720 3720 97.520 1 2175 1 chr3B.!!$F2 2174
2 TraesCS2B01G002300 chr5B 44989096 44991273 2177 False 3714 3714 97.475 1 2175 1 chr5B.!!$F1 2174
3 TraesCS2B01G002300 chr5B 127808629 127810805 2176 False 3692 3692 97.290 1 2175 1 chr5B.!!$F2 2174
4 TraesCS2B01G002300 chr1B 638728834 638731009 2175 False 3690 3690 97.290 1 2175 1 chr1B.!!$F1 2174
5 TraesCS2B01G002300 chr1B 135051577 135053759 2182 True 3600 3600 96.474 1 2178 1 chr1B.!!$R1 2177
6 TraesCS2B01G002300 chr7B 662726600 662728018 1418 False 2453 2453 97.886 1 1418 1 chr7B.!!$F2 1417
7 TraesCS2B01G002300 chr3D 589261909 589263330 1421 True 2447 2447 97.750 1 1421 1 chr3D.!!$R1 1420
8 TraesCS2B01G002300 chr3A 66003516 66004937 1421 True 2447 2447 97.750 1 1421 1 chr3A.!!$R1 1420
9 TraesCS2B01G002300 chr6D 389244205 389245626 1421 True 2442 2442 97.679 1 1421 1 chr6D.!!$R1 1420
10 TraesCS2B01G002300 chr2A 53948217 53948986 769 True 1279 1279 96.628 1409 2178 1 chr2A.!!$R1 769

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
480 483 0.040204 AGGATCAAGTTGGCCCTTGG 59.960 55.0 18.33 4.15 41.72 3.61 F
642 645 0.179009 CGGACCGACCATAGACCCTA 60.179 60.0 8.64 0.00 38.90 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1321 1328 0.622136 TGCCTGCTCATGGATTCTGT 59.378 50.000 0.0 0.0 0.0 3.41 R
2284 2292 1.000506 TGACGCTTCCTTACGCTTTCT 59.999 47.619 0.0 0.0 0.0 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 1.453197 GGTTGGATTGTAGGGGCGG 60.453 63.158 0.00 0.00 0.00 6.13
56 57 1.673626 GCGGTGATTTACTTCACGGGA 60.674 52.381 12.20 0.00 45.63 5.14
207 210 2.223479 GCAATTGGGTCGTTGCGATTAT 60.223 45.455 7.72 0.00 40.95 1.28
228 231 2.375174 TGGGTTGGCTGTCTAATTGTCT 59.625 45.455 0.00 0.00 0.00 3.41
328 331 4.021894 GCCACTGAAAGACTCTACTGAGAA 60.022 45.833 0.00 0.00 39.08 2.87
425 428 0.180406 ATAATTGGAGTCGGCGGCTT 59.820 50.000 17.96 0.53 0.00 4.35
480 483 0.040204 AGGATCAAGTTGGCCCTTGG 59.960 55.000 18.33 4.15 41.72 3.61
519 522 2.701551 TCTCCCTTCAACCCTTTGAGA 58.298 47.619 0.00 0.00 42.79 3.27
642 645 0.179009 CGGACCGACCATAGACCCTA 60.179 60.000 8.64 0.00 38.90 3.53
762 765 1.004200 GAGTCGGGCGGAAAAAGGA 60.004 57.895 0.00 0.00 0.00 3.36
909 912 5.176958 GCACAGTACGATGAAAGTTGTAAGT 59.823 40.000 3.82 0.00 0.00 2.24
951 958 3.562182 TGTCTATCGTTGGCCTCTATGA 58.438 45.455 3.32 0.49 0.00 2.15
1300 1307 6.633583 GCATAGATCCGGAGATTCCCAAATAT 60.634 42.308 11.34 0.00 31.13 1.28
1307 1314 4.024893 CGGAGATTCCCAAATATGTCAACG 60.025 45.833 0.00 0.00 31.13 4.10
1321 1328 7.675962 ATATGTCAACGTTTTAAACTGCCTA 57.324 32.000 0.00 0.00 0.00 3.93
1369 1376 2.301870 ACCTGGCGAACTGAAACATCTA 59.698 45.455 0.00 0.00 0.00 1.98
1506 1513 2.242043 CCCAATAGATACCGGTACCGT 58.758 52.381 31.24 21.26 37.81 4.83
1722 1729 0.034477 GAATCCTTTCCGCCCCTTCA 60.034 55.000 0.00 0.00 0.00 3.02
1735 1742 2.753168 GCCCCTTCAGTTTGAGGTTCTT 60.753 50.000 0.00 0.00 0.00 2.52
1760 1767 2.158593 TGGCCTACCTAAAACTTGTGCA 60.159 45.455 3.32 0.00 36.63 4.57
1805 1812 5.012561 GGTGCTCTCTCCCAATAACAGATAT 59.987 44.000 0.00 0.00 0.00 1.63
1845 1852 6.310149 AGTGGAGGAAAGTCTTCATGAAAAT 58.690 36.000 9.88 0.00 32.75 1.82
1856 1863 5.803967 GTCTTCATGAAAATGATGGACTTGC 59.196 40.000 9.88 0.00 34.24 4.01
2042 2049 5.887598 TGTGGGTGATTTCCATGAAATAGAG 59.112 40.000 0.00 0.00 41.56 2.43
2139 2147 3.381908 ACACTTTGAAGAGAGACAGTCGT 59.618 43.478 0.00 0.00 0.00 4.34
2145 2153 3.380320 TGAAGAGAGACAGTCGTTGTTCA 59.620 43.478 12.77 12.77 41.05 3.18
2175 2183 5.403512 AGAATTCCTGGATAATACGAGGGA 58.596 41.667 0.65 0.00 36.61 4.20
2178 2186 3.441101 TCCTGGATAATACGAGGGATGG 58.559 50.000 0.00 0.00 36.61 3.51
2179 2187 3.173965 CCTGGATAATACGAGGGATGGT 58.826 50.000 0.00 0.00 33.21 3.55
2180 2188 3.055819 CCTGGATAATACGAGGGATGGTG 60.056 52.174 0.00 0.00 33.21 4.17
2181 2189 3.578716 CTGGATAATACGAGGGATGGTGT 59.421 47.826 0.00 0.00 0.00 4.16
2182 2190 3.323691 TGGATAATACGAGGGATGGTGTG 59.676 47.826 0.00 0.00 0.00 3.82
2183 2191 3.576982 GGATAATACGAGGGATGGTGTGA 59.423 47.826 0.00 0.00 0.00 3.58
2184 2192 4.039973 GGATAATACGAGGGATGGTGTGAA 59.960 45.833 0.00 0.00 0.00 3.18
2185 2193 5.280011 GGATAATACGAGGGATGGTGTGAAT 60.280 44.000 0.00 0.00 0.00 2.57
2186 2194 3.753294 ATACGAGGGATGGTGTGAATC 57.247 47.619 0.00 0.00 0.00 2.52
2187 2195 0.541863 ACGAGGGATGGTGTGAATCC 59.458 55.000 0.00 0.00 42.57 3.01
2188 2196 0.541392 CGAGGGATGGTGTGAATCCA 59.459 55.000 4.92 0.00 44.71 3.41
2189 2197 1.141657 CGAGGGATGGTGTGAATCCAT 59.858 52.381 4.92 0.00 44.71 3.41
2197 2205 4.422073 TGGTGTGAATCCATCTATCCAC 57.578 45.455 0.00 0.00 0.00 4.02
2198 2206 3.136443 TGGTGTGAATCCATCTATCCACC 59.864 47.826 0.00 0.00 0.00 4.61
2199 2207 3.136443 GGTGTGAATCCATCTATCCACCA 59.864 47.826 0.00 0.00 0.00 4.17
2200 2208 4.202503 GGTGTGAATCCATCTATCCACCAT 60.203 45.833 0.00 0.00 0.00 3.55
2201 2209 5.380043 GTGTGAATCCATCTATCCACCATT 58.620 41.667 0.00 0.00 0.00 3.16
2202 2210 5.471456 GTGTGAATCCATCTATCCACCATTC 59.529 44.000 0.00 0.00 0.00 2.67
2203 2211 5.370584 TGTGAATCCATCTATCCACCATTCT 59.629 40.000 0.00 0.00 0.00 2.40
2204 2212 6.126390 TGTGAATCCATCTATCCACCATTCTT 60.126 38.462 0.00 0.00 0.00 2.52
2205 2213 6.774656 GTGAATCCATCTATCCACCATTCTTT 59.225 38.462 0.00 0.00 0.00 2.52
2206 2214 7.286316 GTGAATCCATCTATCCACCATTCTTTT 59.714 37.037 0.00 0.00 0.00 2.27
2207 2215 8.501904 TGAATCCATCTATCCACCATTCTTTTA 58.498 33.333 0.00 0.00 0.00 1.52
2208 2216 9.525826 GAATCCATCTATCCACCATTCTTTTAT 57.474 33.333 0.00 0.00 0.00 1.40
2209 2217 9.525826 AATCCATCTATCCACCATTCTTTTATC 57.474 33.333 0.00 0.00 0.00 1.75
2210 2218 8.280258 TCCATCTATCCACCATTCTTTTATCT 57.720 34.615 0.00 0.00 0.00 1.98
2211 2219 8.727149 TCCATCTATCCACCATTCTTTTATCTT 58.273 33.333 0.00 0.00 0.00 2.40
2212 2220 9.359653 CCATCTATCCACCATTCTTTTATCTTT 57.640 33.333 0.00 0.00 0.00 2.52
2215 2223 9.618890 TCTATCCACCATTCTTTTATCTTTCAG 57.381 33.333 0.00 0.00 0.00 3.02
2216 2224 9.401058 CTATCCACCATTCTTTTATCTTTCAGT 57.599 33.333 0.00 0.00 0.00 3.41
2218 2226 8.792830 TCCACCATTCTTTTATCTTTCAGTAG 57.207 34.615 0.00 0.00 0.00 2.57
2219 2227 8.383175 TCCACCATTCTTTTATCTTTCAGTAGT 58.617 33.333 0.00 0.00 0.00 2.73
2220 2228 8.454106 CCACCATTCTTTTATCTTTCAGTAGTG 58.546 37.037 0.00 0.00 0.00 2.74
2221 2229 9.003658 CACCATTCTTTTATCTTTCAGTAGTGT 57.996 33.333 0.00 0.00 0.00 3.55
2222 2230 9.220767 ACCATTCTTTTATCTTTCAGTAGTGTC 57.779 33.333 0.00 0.00 0.00 3.67
2223 2231 9.219603 CCATTCTTTTATCTTTCAGTAGTGTCA 57.780 33.333 0.00 0.00 0.00 3.58
2226 2234 8.603242 TCTTTTATCTTTCAGTAGTGTCAACC 57.397 34.615 0.00 0.00 0.00 3.77
2227 2235 8.429641 TCTTTTATCTTTCAGTAGTGTCAACCT 58.570 33.333 0.00 0.00 0.00 3.50
2228 2236 8.603242 TTTTATCTTTCAGTAGTGTCAACCTC 57.397 34.615 0.00 0.00 0.00 3.85
2229 2237 5.808366 ATCTTTCAGTAGTGTCAACCTCA 57.192 39.130 0.00 0.00 0.00 3.86
2230 2238 5.201713 TCTTTCAGTAGTGTCAACCTCAG 57.798 43.478 0.00 0.00 0.00 3.35
2231 2239 4.649674 TCTTTCAGTAGTGTCAACCTCAGT 59.350 41.667 0.00 0.00 0.00 3.41
2232 2240 5.128827 TCTTTCAGTAGTGTCAACCTCAGTT 59.871 40.000 0.00 0.00 36.33 3.16
2233 2241 4.585955 TCAGTAGTGTCAACCTCAGTTC 57.414 45.455 0.00 0.00 32.45 3.01
2234 2242 4.215908 TCAGTAGTGTCAACCTCAGTTCT 58.784 43.478 0.00 0.00 32.45 3.01
2235 2243 4.038042 TCAGTAGTGTCAACCTCAGTTCTG 59.962 45.833 0.00 0.00 36.04 3.02
2236 2244 2.918712 AGTGTCAACCTCAGTTCTGG 57.081 50.000 0.00 0.00 32.45 3.86
2237 2245 2.119495 AGTGTCAACCTCAGTTCTGGT 58.881 47.619 0.00 0.00 38.35 4.00
2238 2246 2.505819 AGTGTCAACCTCAGTTCTGGTT 59.494 45.455 0.00 0.00 46.33 3.67
2239 2247 2.872858 GTGTCAACCTCAGTTCTGGTTC 59.127 50.000 0.00 0.00 43.88 3.62
2240 2248 2.771943 TGTCAACCTCAGTTCTGGTTCT 59.228 45.455 0.00 0.00 43.88 3.01
2241 2249 3.199946 TGTCAACCTCAGTTCTGGTTCTT 59.800 43.478 0.00 0.00 43.88 2.52
2242 2250 4.200092 GTCAACCTCAGTTCTGGTTCTTT 58.800 43.478 0.00 0.00 43.88 2.52
2243 2251 5.104693 TGTCAACCTCAGTTCTGGTTCTTTA 60.105 40.000 0.00 0.00 43.88 1.85
2244 2252 5.998363 GTCAACCTCAGTTCTGGTTCTTTAT 59.002 40.000 0.00 0.00 43.88 1.40
2245 2253 6.147985 GTCAACCTCAGTTCTGGTTCTTTATC 59.852 42.308 0.00 0.00 43.88 1.75
2246 2254 6.043243 TCAACCTCAGTTCTGGTTCTTTATCT 59.957 38.462 0.00 0.00 43.88 1.98
2247 2255 6.441088 ACCTCAGTTCTGGTTCTTTATCTT 57.559 37.500 0.00 0.00 31.62 2.40
2248 2256 6.468543 ACCTCAGTTCTGGTTCTTTATCTTC 58.531 40.000 0.00 0.00 31.62 2.87
2249 2257 5.578727 CCTCAGTTCTGGTTCTTTATCTTCG 59.421 44.000 0.00 0.00 0.00 3.79
2250 2258 6.340962 TCAGTTCTGGTTCTTTATCTTCGA 57.659 37.500 0.00 0.00 0.00 3.71
2251 2259 6.755206 TCAGTTCTGGTTCTTTATCTTCGAA 58.245 36.000 0.00 0.00 0.00 3.71
2252 2260 7.386851 TCAGTTCTGGTTCTTTATCTTCGAAT 58.613 34.615 0.00 0.00 0.00 3.34
2253 2261 8.528643 TCAGTTCTGGTTCTTTATCTTCGAATA 58.471 33.333 0.00 0.00 0.00 1.75
2254 2262 8.596380 CAGTTCTGGTTCTTTATCTTCGAATAC 58.404 37.037 0.00 0.00 0.00 1.89
2255 2263 8.532819 AGTTCTGGTTCTTTATCTTCGAATACT 58.467 33.333 0.00 0.00 0.00 2.12
2256 2264 8.809478 GTTCTGGTTCTTTATCTTCGAATACTC 58.191 37.037 0.00 0.00 0.00 2.59
2257 2265 8.294954 TCTGGTTCTTTATCTTCGAATACTCT 57.705 34.615 0.00 0.00 0.00 3.24
2258 2266 8.750298 TCTGGTTCTTTATCTTCGAATACTCTT 58.250 33.333 0.00 0.00 0.00 2.85
2259 2267 8.928270 TGGTTCTTTATCTTCGAATACTCTTC 57.072 34.615 0.00 0.00 0.00 2.87
2260 2268 8.528643 TGGTTCTTTATCTTCGAATACTCTTCA 58.471 33.333 0.00 0.00 0.00 3.02
2261 2269 9.535878 GGTTCTTTATCTTCGAATACTCTTCAT 57.464 33.333 0.00 0.00 0.00 2.57
2266 2274 8.873215 TTATCTTCGAATACTCTTCATTGTCC 57.127 34.615 0.00 0.00 0.00 4.02
2267 2275 6.531503 TCTTCGAATACTCTTCATTGTCCT 57.468 37.500 0.00 0.00 0.00 3.85
2268 2276 6.333416 TCTTCGAATACTCTTCATTGTCCTG 58.667 40.000 0.00 0.00 0.00 3.86
2269 2277 5.011090 TCGAATACTCTTCATTGTCCTGG 57.989 43.478 0.00 0.00 0.00 4.45
2270 2278 4.709886 TCGAATACTCTTCATTGTCCTGGA 59.290 41.667 0.00 0.00 0.00 3.86
2271 2279 5.186992 TCGAATACTCTTCATTGTCCTGGAA 59.813 40.000 0.00 0.00 0.00 3.53
2272 2280 5.521735 CGAATACTCTTCATTGTCCTGGAAG 59.478 44.000 0.00 0.00 39.44 3.46
2273 2281 3.064900 ACTCTTCATTGTCCTGGAAGC 57.935 47.619 0.00 0.00 38.29 3.86
2274 2282 2.373169 ACTCTTCATTGTCCTGGAAGCA 59.627 45.455 0.00 0.00 38.29 3.91
2275 2283 3.181440 ACTCTTCATTGTCCTGGAAGCAA 60.181 43.478 0.00 0.00 38.29 3.91
2276 2284 4.015084 CTCTTCATTGTCCTGGAAGCAAT 58.985 43.478 0.00 2.07 38.29 3.56
2277 2285 3.760151 TCTTCATTGTCCTGGAAGCAATG 59.240 43.478 23.87 23.87 46.25 2.82
2278 2286 1.820519 TCATTGTCCTGGAAGCAATGC 59.179 47.619 24.55 0.00 45.19 3.56
2279 2287 1.822990 CATTGTCCTGGAAGCAATGCT 59.177 47.619 20.47 0.00 41.61 3.79
2298 2306 4.483476 GCTTGAAAGAAAGCGTAAGGAA 57.517 40.909 0.00 0.00 42.86 3.36
2299 2307 4.467735 GCTTGAAAGAAAGCGTAAGGAAG 58.532 43.478 0.00 0.00 42.86 3.46
2300 2308 4.467735 CTTGAAAGAAAGCGTAAGGAAGC 58.532 43.478 0.00 0.00 38.28 3.86
2301 2309 2.478894 TGAAAGAAAGCGTAAGGAAGCG 59.521 45.455 0.00 0.00 38.61 4.68
2302 2310 2.165319 AAGAAAGCGTAAGGAAGCGT 57.835 45.000 0.00 0.00 38.61 5.07
2303 2311 1.711206 AGAAAGCGTAAGGAAGCGTC 58.289 50.000 0.00 0.00 38.61 5.19
2304 2312 1.000506 AGAAAGCGTAAGGAAGCGTCA 59.999 47.619 1.14 0.00 38.61 4.35
2305 2313 1.796459 GAAAGCGTAAGGAAGCGTCAA 59.204 47.619 1.14 0.00 38.61 3.18
2306 2314 1.873698 AAGCGTAAGGAAGCGTCAAA 58.126 45.000 1.14 0.00 38.61 2.69
2307 2315 2.094762 AGCGTAAGGAAGCGTCAAAT 57.905 45.000 1.14 0.00 38.61 2.32
2308 2316 2.000447 AGCGTAAGGAAGCGTCAAATC 59.000 47.619 1.14 0.00 38.61 2.17
2309 2317 1.730064 GCGTAAGGAAGCGTCAAATCA 59.270 47.619 1.14 0.00 38.28 2.57
2310 2318 2.222819 GCGTAAGGAAGCGTCAAATCAG 60.223 50.000 1.14 0.00 38.28 2.90
2311 2319 2.993899 CGTAAGGAAGCGTCAAATCAGT 59.006 45.455 1.14 0.00 0.00 3.41
2312 2320 4.171005 CGTAAGGAAGCGTCAAATCAGTA 58.829 43.478 1.14 0.00 0.00 2.74
2313 2321 4.804139 CGTAAGGAAGCGTCAAATCAGTAT 59.196 41.667 1.14 0.00 0.00 2.12
2314 2322 5.276395 CGTAAGGAAGCGTCAAATCAGTATG 60.276 44.000 1.14 0.00 37.54 2.39
2329 2337 5.756195 TCAGTATGATGTATTGGCAAAGC 57.244 39.130 3.01 0.26 42.56 3.51
2330 2338 4.580167 TCAGTATGATGTATTGGCAAAGCC 59.420 41.667 3.01 0.00 45.84 4.35
2342 2350 2.200373 GCAAAGCCAGTAAGAAGGGA 57.800 50.000 0.00 0.00 0.00 4.20
2343 2351 2.514803 GCAAAGCCAGTAAGAAGGGAA 58.485 47.619 0.00 0.00 0.00 3.97
2344 2352 3.092301 GCAAAGCCAGTAAGAAGGGAAT 58.908 45.455 0.00 0.00 0.00 3.01
2345 2353 3.129462 GCAAAGCCAGTAAGAAGGGAATC 59.871 47.826 0.00 0.00 0.00 2.52
2346 2354 2.990066 AGCCAGTAAGAAGGGAATCG 57.010 50.000 0.00 0.00 0.00 3.34
2347 2355 2.467880 AGCCAGTAAGAAGGGAATCGA 58.532 47.619 0.00 0.00 0.00 3.59
2348 2356 2.838202 AGCCAGTAAGAAGGGAATCGAA 59.162 45.455 0.00 0.00 0.00 3.71
2349 2357 3.263425 AGCCAGTAAGAAGGGAATCGAAA 59.737 43.478 0.00 0.00 0.00 3.46
2350 2358 3.623510 GCCAGTAAGAAGGGAATCGAAAG 59.376 47.826 0.00 0.00 0.00 2.62
2351 2359 4.833390 CCAGTAAGAAGGGAATCGAAAGT 58.167 43.478 0.00 0.00 0.00 2.66
2352 2360 5.626116 GCCAGTAAGAAGGGAATCGAAAGTA 60.626 44.000 0.00 0.00 0.00 2.24
2353 2361 6.043411 CCAGTAAGAAGGGAATCGAAAGTAG 58.957 44.000 0.00 0.00 0.00 2.57
2354 2362 6.127423 CCAGTAAGAAGGGAATCGAAAGTAGA 60.127 42.308 0.00 0.00 0.00 2.59
2355 2363 7.418025 CCAGTAAGAAGGGAATCGAAAGTAGAT 60.418 40.741 0.00 0.00 0.00 1.98
2356 2364 8.630917 CAGTAAGAAGGGAATCGAAAGTAGATA 58.369 37.037 0.00 0.00 0.00 1.98
2357 2365 8.852135 AGTAAGAAGGGAATCGAAAGTAGATAG 58.148 37.037 0.00 0.00 0.00 2.08
2358 2366 6.658188 AGAAGGGAATCGAAAGTAGATAGG 57.342 41.667 0.00 0.00 0.00 2.57
2359 2367 5.540719 AGAAGGGAATCGAAAGTAGATAGGG 59.459 44.000 0.00 0.00 0.00 3.53
2360 2368 5.076057 AGGGAATCGAAAGTAGATAGGGA 57.924 43.478 0.00 0.00 0.00 4.20
2361 2369 4.833938 AGGGAATCGAAAGTAGATAGGGAC 59.166 45.833 0.00 0.00 0.00 4.46
2362 2370 4.833938 GGGAATCGAAAGTAGATAGGGACT 59.166 45.833 0.00 0.00 46.37 3.85
2363 2371 5.047872 GGGAATCGAAAGTAGATAGGGACTC 60.048 48.000 0.00 0.00 41.75 3.36
2364 2372 5.047872 GGAATCGAAAGTAGATAGGGACTCC 60.048 48.000 0.00 0.00 41.75 3.85
2365 2373 3.830121 TCGAAAGTAGATAGGGACTCCC 58.170 50.000 5.90 5.90 45.90 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 1.575419 AGTAAATCACCGCCCCTACA 58.425 50.000 0.00 0.00 0.00 2.74
39 40 3.056035 ACCTCTCCCGTGAAGTAAATCAC 60.056 47.826 0.00 0.00 44.96 3.06
56 57 2.252714 GGACTTGAACCAGAGACCTCT 58.747 52.381 0.00 0.00 41.37 3.69
207 210 2.375174 AGACAATTAGACAGCCAACCCA 59.625 45.455 0.00 0.00 0.00 4.51
228 231 7.121759 GGTACAAGATACTATCATTACCGCCTA 59.878 40.741 0.00 0.00 0.00 3.93
339 342 3.328050 ACCTCCTCTACCTTTTTGACAGG 59.672 47.826 0.00 0.00 37.45 4.00
409 412 1.745489 GAAAGCCGCCGACTCCAAT 60.745 57.895 0.00 0.00 0.00 3.16
425 428 2.402564 CAGATGAGGGAAGCCTAGGAA 58.597 52.381 14.75 0.00 0.00 3.36
480 483 5.703130 GGGAGATAGTGCATCAAGTTATTCC 59.297 44.000 0.00 0.00 35.96 3.01
519 522 6.976934 TTTCCTTCCTTTTGCTACATTTCT 57.023 33.333 0.00 0.00 0.00 2.52
642 645 6.183360 CGGCTAATGTGTTCCACTTATTGAAT 60.183 38.462 0.00 0.00 35.11 2.57
762 765 1.684049 CAGGAACGGGGAGCTCTCT 60.684 63.158 14.63 0.00 0.00 3.10
1300 1307 4.634883 TGTAGGCAGTTTAAAACGTTGACA 59.365 37.500 0.00 0.00 36.23 3.58
1307 1314 6.569179 TGGATTCTGTAGGCAGTTTAAAAC 57.431 37.500 0.00 0.00 43.05 2.43
1321 1328 0.622136 TGCCTGCTCATGGATTCTGT 59.378 50.000 0.00 0.00 0.00 3.41
1369 1376 4.075682 GCTTTCTTTTCCTCTGGCTACTT 58.924 43.478 0.00 0.00 0.00 2.24
1579 1586 8.408043 TGATAGACTGTTTTTGGTCATTTGAT 57.592 30.769 0.00 0.00 35.18 2.57
1722 1729 2.959030 GGCCAAAGAAGAACCTCAAACT 59.041 45.455 0.00 0.00 0.00 2.66
1735 1742 4.825085 CACAAGTTTTAGGTAGGCCAAAGA 59.175 41.667 5.01 0.00 37.19 2.52
1760 1767 6.868864 GCACCGTAATGAATCACACTATAGAT 59.131 38.462 6.78 0.00 0.00 1.98
1805 1812 5.087323 CCTCCACTATTGCCCTATTAGAGA 58.913 45.833 0.00 0.00 0.00 3.10
1845 1852 6.003326 TCATTCAAAAGTAGCAAGTCCATCA 58.997 36.000 0.00 0.00 0.00 3.07
2042 2049 6.481976 TCGGTATAATCAATGTGTCAATGGTC 59.518 38.462 0.00 0.00 0.00 4.02
2139 2147 4.584325 CCAGGAATTCTTGAGGTTGAACAA 59.416 41.667 18.45 0.00 0.00 2.83
2145 2153 6.992715 CGTATTATCCAGGAATTCTTGAGGTT 59.007 38.462 18.45 6.90 0.00 3.50
2178 2186 4.422073 TGGTGGATAGATGGATTCACAC 57.578 45.455 0.00 0.00 37.09 3.82
2179 2187 5.370584 AGAATGGTGGATAGATGGATTCACA 59.629 40.000 0.00 0.00 37.09 3.58
2180 2188 5.874093 AGAATGGTGGATAGATGGATTCAC 58.126 41.667 0.00 0.00 34.92 3.18
2181 2189 6.520021 AAGAATGGTGGATAGATGGATTCA 57.480 37.500 0.00 0.00 0.00 2.57
2182 2190 7.830099 AAAAGAATGGTGGATAGATGGATTC 57.170 36.000 0.00 0.00 0.00 2.52
2183 2191 9.525826 GATAAAAGAATGGTGGATAGATGGATT 57.474 33.333 0.00 0.00 0.00 3.01
2184 2192 8.898728 AGATAAAAGAATGGTGGATAGATGGAT 58.101 33.333 0.00 0.00 0.00 3.41
2185 2193 8.280258 AGATAAAAGAATGGTGGATAGATGGA 57.720 34.615 0.00 0.00 0.00 3.41
2186 2194 8.930846 AAGATAAAAGAATGGTGGATAGATGG 57.069 34.615 0.00 0.00 0.00 3.51
2189 2197 9.618890 CTGAAAGATAAAAGAATGGTGGATAGA 57.381 33.333 0.00 0.00 34.07 1.98
2190 2198 9.401058 ACTGAAAGATAAAAGAATGGTGGATAG 57.599 33.333 0.00 0.00 37.43 2.08
2192 2200 9.401058 CTACTGAAAGATAAAAGAATGGTGGAT 57.599 33.333 0.00 0.00 37.43 3.41
2193 2201 8.383175 ACTACTGAAAGATAAAAGAATGGTGGA 58.617 33.333 0.00 0.00 37.43 4.02
2194 2202 8.454106 CACTACTGAAAGATAAAAGAATGGTGG 58.546 37.037 0.00 0.00 37.43 4.61
2195 2203 9.003658 ACACTACTGAAAGATAAAAGAATGGTG 57.996 33.333 0.00 0.00 37.43 4.17
2196 2204 9.220767 GACACTACTGAAAGATAAAAGAATGGT 57.779 33.333 0.00 0.00 37.43 3.55
2197 2205 9.219603 TGACACTACTGAAAGATAAAAGAATGG 57.780 33.333 0.00 0.00 37.43 3.16
2200 2208 9.052759 GGTTGACACTACTGAAAGATAAAAGAA 57.947 33.333 0.00 0.00 37.43 2.52
2201 2209 8.429641 AGGTTGACACTACTGAAAGATAAAAGA 58.570 33.333 0.00 0.00 37.43 2.52
2202 2210 8.608844 AGGTTGACACTACTGAAAGATAAAAG 57.391 34.615 0.00 0.00 37.43 2.27
2203 2211 8.208224 TGAGGTTGACACTACTGAAAGATAAAA 58.792 33.333 0.00 0.00 37.43 1.52
2204 2212 7.732025 TGAGGTTGACACTACTGAAAGATAAA 58.268 34.615 0.00 0.00 37.43 1.40
2205 2213 7.015292 ACTGAGGTTGACACTACTGAAAGATAA 59.985 37.037 0.00 0.00 37.43 1.75
2206 2214 6.493802 ACTGAGGTTGACACTACTGAAAGATA 59.506 38.462 0.00 0.00 37.43 1.98
2207 2215 5.305644 ACTGAGGTTGACACTACTGAAAGAT 59.694 40.000 0.00 0.00 37.43 2.40
2208 2216 4.649674 ACTGAGGTTGACACTACTGAAAGA 59.350 41.667 0.00 0.00 37.43 2.52
2209 2217 4.950050 ACTGAGGTTGACACTACTGAAAG 58.050 43.478 0.00 0.00 42.29 2.62
2210 2218 5.128827 AGAACTGAGGTTGACACTACTGAAA 59.871 40.000 0.00 0.00 35.58 2.69
2211 2219 4.649674 AGAACTGAGGTTGACACTACTGAA 59.350 41.667 0.00 0.00 35.58 3.02
2212 2220 4.038042 CAGAACTGAGGTTGACACTACTGA 59.962 45.833 0.00 0.00 35.58 3.41
2213 2221 4.302455 CAGAACTGAGGTTGACACTACTG 58.698 47.826 0.00 0.00 35.58 2.74
2214 2222 3.322254 CCAGAACTGAGGTTGACACTACT 59.678 47.826 3.19 0.00 35.58 2.57
2215 2223 3.069729 ACCAGAACTGAGGTTGACACTAC 59.930 47.826 3.19 0.00 33.39 2.73
2216 2224 3.305720 ACCAGAACTGAGGTTGACACTA 58.694 45.455 3.19 0.00 33.39 2.74
2217 2225 2.119495 ACCAGAACTGAGGTTGACACT 58.881 47.619 3.19 0.00 33.39 3.55
2218 2226 2.622064 ACCAGAACTGAGGTTGACAC 57.378 50.000 3.19 0.00 33.39 3.67
2224 2232 6.441088 AAGATAAAGAACCAGAACTGAGGT 57.559 37.500 3.19 0.00 40.61 3.85
2225 2233 5.578727 CGAAGATAAAGAACCAGAACTGAGG 59.421 44.000 3.19 0.00 0.00 3.86
2226 2234 6.390721 TCGAAGATAAAGAACCAGAACTGAG 58.609 40.000 3.19 0.00 0.00 3.35
2227 2235 6.340962 TCGAAGATAAAGAACCAGAACTGA 57.659 37.500 3.19 0.00 0.00 3.41
2228 2236 7.602517 ATTCGAAGATAAAGAACCAGAACTG 57.397 36.000 3.35 0.00 35.04 3.16
2229 2237 8.532819 AGTATTCGAAGATAAAGAACCAGAACT 58.467 33.333 3.35 0.00 35.04 3.01
2230 2238 8.705048 AGTATTCGAAGATAAAGAACCAGAAC 57.295 34.615 3.35 0.00 35.04 3.01
2231 2239 8.750298 AGAGTATTCGAAGATAAAGAACCAGAA 58.250 33.333 3.35 0.00 35.04 3.02
2232 2240 8.294954 AGAGTATTCGAAGATAAAGAACCAGA 57.705 34.615 3.35 0.00 35.04 3.86
2233 2241 8.934507 AAGAGTATTCGAAGATAAAGAACCAG 57.065 34.615 3.35 0.00 35.04 4.00
2234 2242 8.528643 TGAAGAGTATTCGAAGATAAAGAACCA 58.471 33.333 3.35 0.00 35.04 3.67
2235 2243 8.928270 TGAAGAGTATTCGAAGATAAAGAACC 57.072 34.615 3.35 0.00 35.04 3.62
2240 2248 9.314321 GGACAATGAAGAGTATTCGAAGATAAA 57.686 33.333 3.35 0.00 35.04 1.40
2241 2249 8.696374 AGGACAATGAAGAGTATTCGAAGATAA 58.304 33.333 3.35 0.00 35.04 1.75
2242 2250 8.138074 CAGGACAATGAAGAGTATTCGAAGATA 58.862 37.037 3.35 0.00 35.04 1.98
2243 2251 6.983307 CAGGACAATGAAGAGTATTCGAAGAT 59.017 38.462 3.35 0.00 35.04 2.40
2244 2252 6.333416 CAGGACAATGAAGAGTATTCGAAGA 58.667 40.000 3.35 0.00 0.00 2.87
2245 2253 5.521735 CCAGGACAATGAAGAGTATTCGAAG 59.478 44.000 3.35 0.00 0.00 3.79
2246 2254 5.186992 TCCAGGACAATGAAGAGTATTCGAA 59.813 40.000 0.00 0.00 0.00 3.71
2247 2255 4.709886 TCCAGGACAATGAAGAGTATTCGA 59.290 41.667 0.00 0.00 0.00 3.71
2248 2256 5.011090 TCCAGGACAATGAAGAGTATTCG 57.989 43.478 0.00 0.00 0.00 3.34
2249 2257 5.295540 GCTTCCAGGACAATGAAGAGTATTC 59.704 44.000 0.00 0.00 38.16 1.75
2250 2258 5.189180 GCTTCCAGGACAATGAAGAGTATT 58.811 41.667 0.00 0.00 38.16 1.89
2251 2259 4.225942 TGCTTCCAGGACAATGAAGAGTAT 59.774 41.667 0.00 0.00 38.16 2.12
2252 2260 3.582647 TGCTTCCAGGACAATGAAGAGTA 59.417 43.478 0.00 0.00 38.16 2.59
2253 2261 2.373169 TGCTTCCAGGACAATGAAGAGT 59.627 45.455 0.00 0.00 38.16 3.24
2254 2262 3.063510 TGCTTCCAGGACAATGAAGAG 57.936 47.619 0.00 0.00 38.16 2.85
2255 2263 3.507162 TTGCTTCCAGGACAATGAAGA 57.493 42.857 0.00 0.00 38.16 2.87
2256 2264 7.298323 AAGCATTGCTTCCAGGACAATGAAG 62.298 44.000 26.45 7.84 46.77 3.02
2257 2265 5.537722 AAGCATTGCTTCCAGGACAATGAA 61.538 41.667 26.45 3.33 46.77 2.57
2258 2266 4.068135 AAGCATTGCTTCCAGGACAATGA 61.068 43.478 26.45 0.00 46.77 2.57
2259 2267 2.232941 AAGCATTGCTTCCAGGACAATG 59.767 45.455 21.18 21.18 46.77 2.82
2260 2268 2.226962 AGCATTGCTTCCAGGACAAT 57.773 45.000 5.03 0.25 33.89 2.71
2261 2269 1.614903 CAAGCATTGCTTCCAGGACAA 59.385 47.619 20.75 0.00 46.77 3.18
2262 2270 1.202915 TCAAGCATTGCTTCCAGGACA 60.203 47.619 20.75 0.00 46.77 4.02
2263 2271 1.538047 TCAAGCATTGCTTCCAGGAC 58.462 50.000 20.75 0.00 46.77 3.85
2264 2272 2.291209 TTCAAGCATTGCTTCCAGGA 57.709 45.000 20.75 12.30 46.77 3.86
2265 2273 2.559668 TCTTTCAAGCATTGCTTCCAGG 59.440 45.455 20.75 10.16 46.77 4.45
2266 2274 3.928727 TCTTTCAAGCATTGCTTCCAG 57.071 42.857 20.75 15.58 46.77 3.86
2267 2275 4.624015 CTTTCTTTCAAGCATTGCTTCCA 58.376 39.130 20.75 8.09 46.77 3.53
2268 2276 3.431233 GCTTTCTTTCAAGCATTGCTTCC 59.569 43.478 20.75 0.00 46.77 3.46
2269 2277 3.120782 CGCTTTCTTTCAAGCATTGCTTC 59.879 43.478 20.75 5.97 46.77 3.86
2277 2285 4.467735 CTTCCTTACGCTTTCTTTCAAGC 58.532 43.478 0.00 0.00 45.01 4.01
2278 2286 4.467735 GCTTCCTTACGCTTTCTTTCAAG 58.532 43.478 0.00 0.00 0.00 3.02
2279 2287 3.059188 CGCTTCCTTACGCTTTCTTTCAA 60.059 43.478 0.00 0.00 0.00 2.69
2280 2288 2.478894 CGCTTCCTTACGCTTTCTTTCA 59.521 45.455 0.00 0.00 0.00 2.69
2281 2289 2.479275 ACGCTTCCTTACGCTTTCTTTC 59.521 45.455 0.00 0.00 0.00 2.62
2282 2290 2.479275 GACGCTTCCTTACGCTTTCTTT 59.521 45.455 0.00 0.00 0.00 2.52
2283 2291 2.067013 GACGCTTCCTTACGCTTTCTT 58.933 47.619 0.00 0.00 0.00 2.52
2284 2292 1.000506 TGACGCTTCCTTACGCTTTCT 59.999 47.619 0.00 0.00 0.00 2.52
2285 2293 1.425412 TGACGCTTCCTTACGCTTTC 58.575 50.000 0.00 0.00 0.00 2.62
2286 2294 1.873698 TTGACGCTTCCTTACGCTTT 58.126 45.000 0.00 0.00 0.00 3.51
2287 2295 1.873698 TTTGACGCTTCCTTACGCTT 58.126 45.000 0.00 0.00 0.00 4.68
2288 2296 2.000447 GATTTGACGCTTCCTTACGCT 59.000 47.619 0.00 0.00 0.00 5.07
2289 2297 1.730064 TGATTTGACGCTTCCTTACGC 59.270 47.619 0.00 0.00 0.00 4.42
2290 2298 2.993899 ACTGATTTGACGCTTCCTTACG 59.006 45.455 0.00 0.00 0.00 3.18
2291 2299 5.810587 TCATACTGATTTGACGCTTCCTTAC 59.189 40.000 0.00 0.00 0.00 2.34
2292 2300 5.972935 TCATACTGATTTGACGCTTCCTTA 58.027 37.500 0.00 0.00 0.00 2.69
2293 2301 4.832248 TCATACTGATTTGACGCTTCCTT 58.168 39.130 0.00 0.00 0.00 3.36
2294 2302 4.471904 TCATACTGATTTGACGCTTCCT 57.528 40.909 0.00 0.00 0.00 3.36
2295 2303 4.572389 ACATCATACTGATTTGACGCTTCC 59.428 41.667 0.00 0.00 34.28 3.46
2296 2304 5.725110 ACATCATACTGATTTGACGCTTC 57.275 39.130 0.00 0.00 34.28 3.86
2297 2305 7.254898 CCAATACATCATACTGATTTGACGCTT 60.255 37.037 2.95 0.00 34.28 4.68
2298 2306 6.203530 CCAATACATCATACTGATTTGACGCT 59.796 38.462 2.95 0.00 34.28 5.07
2299 2307 6.365839 CCAATACATCATACTGATTTGACGC 58.634 40.000 2.95 0.00 34.28 5.19
2300 2308 6.018016 TGCCAATACATCATACTGATTTGACG 60.018 38.462 2.95 0.00 34.28 4.35
2301 2309 7.263100 TGCCAATACATCATACTGATTTGAC 57.737 36.000 2.95 0.00 34.28 3.18
2302 2310 7.878547 TTGCCAATACATCATACTGATTTGA 57.121 32.000 2.95 0.00 34.28 2.69
2303 2311 7.168637 GCTTTGCCAATACATCATACTGATTTG 59.831 37.037 0.00 0.00 34.28 2.32
2304 2312 7.205297 GCTTTGCCAATACATCATACTGATTT 58.795 34.615 0.00 0.00 34.28 2.17
2305 2313 6.742109 GCTTTGCCAATACATCATACTGATT 58.258 36.000 0.00 0.00 34.28 2.57
2306 2314 6.323203 GCTTTGCCAATACATCATACTGAT 57.677 37.500 0.00 0.00 37.65 2.90
2307 2315 5.756195 GCTTTGCCAATACATCATACTGA 57.244 39.130 0.00 0.00 0.00 3.41
2323 2331 2.200373 TCCCTTCTTACTGGCTTTGC 57.800 50.000 0.00 0.00 0.00 3.68
2324 2332 3.375299 CGATTCCCTTCTTACTGGCTTTG 59.625 47.826 0.00 0.00 0.00 2.77
2325 2333 3.263425 TCGATTCCCTTCTTACTGGCTTT 59.737 43.478 0.00 0.00 0.00 3.51
2326 2334 2.838202 TCGATTCCCTTCTTACTGGCTT 59.162 45.455 0.00 0.00 0.00 4.35
2327 2335 2.467880 TCGATTCCCTTCTTACTGGCT 58.532 47.619 0.00 0.00 0.00 4.75
2328 2336 2.981859 TCGATTCCCTTCTTACTGGC 57.018 50.000 0.00 0.00 0.00 4.85
2329 2337 4.833390 ACTTTCGATTCCCTTCTTACTGG 58.167 43.478 0.00 0.00 0.00 4.00
2330 2338 6.864342 TCTACTTTCGATTCCCTTCTTACTG 58.136 40.000 0.00 0.00 0.00 2.74
2331 2339 7.663043 ATCTACTTTCGATTCCCTTCTTACT 57.337 36.000 0.00 0.00 0.00 2.24
2332 2340 8.083462 CCTATCTACTTTCGATTCCCTTCTTAC 58.917 40.741 0.00 0.00 0.00 2.34
2333 2341 7.232941 CCCTATCTACTTTCGATTCCCTTCTTA 59.767 40.741 0.00 0.00 0.00 2.10
2334 2342 6.042208 CCCTATCTACTTTCGATTCCCTTCTT 59.958 42.308 0.00 0.00 0.00 2.52
2335 2343 5.540719 CCCTATCTACTTTCGATTCCCTTCT 59.459 44.000 0.00 0.00 0.00 2.85
2336 2344 5.539193 TCCCTATCTACTTTCGATTCCCTTC 59.461 44.000 0.00 0.00 0.00 3.46
2337 2345 5.304871 GTCCCTATCTACTTTCGATTCCCTT 59.695 44.000 0.00 0.00 0.00 3.95
2338 2346 4.833938 GTCCCTATCTACTTTCGATTCCCT 59.166 45.833 0.00 0.00 0.00 4.20
2339 2347 4.833938 AGTCCCTATCTACTTTCGATTCCC 59.166 45.833 0.00 0.00 0.00 3.97
2340 2348 5.047872 GGAGTCCCTATCTACTTTCGATTCC 60.048 48.000 0.00 0.00 0.00 3.01
2341 2349 5.047872 GGGAGTCCCTATCTACTTTCGATTC 60.048 48.000 22.04 0.00 41.34 2.52
2342 2350 4.833938 GGGAGTCCCTATCTACTTTCGATT 59.166 45.833 22.04 0.00 41.34 3.34
2343 2351 4.140994 TGGGAGTCCCTATCTACTTTCGAT 60.141 45.833 28.73 0.00 45.70 3.59
2344 2352 3.203710 TGGGAGTCCCTATCTACTTTCGA 59.796 47.826 28.73 0.42 45.70 3.71
2345 2353 3.318557 GTGGGAGTCCCTATCTACTTTCG 59.681 52.174 28.73 0.00 45.70 3.46
2346 2354 4.342665 CAGTGGGAGTCCCTATCTACTTTC 59.657 50.000 28.73 6.59 45.70 2.62
2347 2355 4.264895 ACAGTGGGAGTCCCTATCTACTTT 60.265 45.833 28.73 13.42 45.70 2.66
2348 2356 3.272551 ACAGTGGGAGTCCCTATCTACTT 59.727 47.826 28.73 11.01 45.70 2.24
2349 2357 2.860041 ACAGTGGGAGTCCCTATCTACT 59.140 50.000 28.73 19.68 45.70 2.57
2350 2358 3.315880 ACAGTGGGAGTCCCTATCTAC 57.684 52.381 28.73 17.71 45.70 2.59
2351 2359 4.313362 TCTACAGTGGGAGTCCCTATCTA 58.687 47.826 28.73 11.93 45.70 1.98
2352 2360 3.132056 TCTACAGTGGGAGTCCCTATCT 58.868 50.000 28.73 19.78 45.70 1.98
2353 2361 3.596940 TCTACAGTGGGAGTCCCTATC 57.403 52.381 28.73 17.99 45.70 2.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.