AutoCloner

Multiple sequence alignment - TraesCS2B01G001500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2B01G001500	chr2B	100.000	2549	0	0	1	2549	1180154	1182702	0.000000e+00	4708.0
1	TraesCS2B01G001500	chr2B	91.372	2005	136	17	574	2549	710554482	710552486	0.000000e+00	2710.0
2	TraesCS2B01G001500	chr2B	91.885	382	31	0	1	382	49655233	49655614	3.730000e-148	534.0
3	TraesCS2B01G001500	chr2D	94.907	1983	87	12	572	2549	632386604	632388577	0.000000e+00	3090.0
4	TraesCS2B01G001500	chr2D	83.799	179	22	6	396	570	605336232	605336407	2.030000e-36	163.0
5	TraesCS2B01G001500	chr2D	78.238	193	38	4	381	570	556022049	556022240	1.240000e-23	121.0
6	TraesCS2B01G001500	chr2D	77.966	177	36	3	396	570	42557326	42557151	9.640000e-20	108.0
7	TraesCS2B01G001500	chr2D	75.393	191	44	3	381	570	38478189	38478377	3.490000e-14	89.8
8	TraesCS2B01G001500	chr4D	94.173	2008	81	16	572	2549	43272763	43270762	0.000000e+00	3027.0
9	TraesCS2B01G001500	chr3B	93.769	2006	90	16	575	2549	548772277	548774278	0.000000e+00	2979.0
10	TraesCS2B01G001500	chr3B	92.768	2005	107	17	575	2549	548242939	548244935	0.000000e+00	2865.0
11	TraesCS2B01G001500	chr3B	90.923	650	29	14	1925	2549	687026515	687027159	0.000000e+00	846.0
12	TraesCS2B01G001500	chr5B	93.177	2008	101	17	572	2549	680230618	680228617	0.000000e+00	2916.0
13	TraesCS2B01G001500	chr5B	92.975	2007	104	15	572	2549	508124524	508122526	0.000000e+00	2891.0
14	TraesCS2B01G001500	chr7B	92.380	2008	111	17	572	2549	523399854	523397859	0.000000e+00	2822.0
15	TraesCS2B01G001500	chr7B	92.384	2009	110	21	572	2549	523525076	523523080	0.000000e+00	2822.0
16	TraesCS2B01G001500	chr7B	92.778	180	11	2	391	570	220240786	220240609	2.520000e-65	259.0
17	TraesCS2B01G001500	chr7A	92.056	2014	100	28	572	2549	15645803	15647792	0.000000e+00	2778.0
18	TraesCS2B01G001500	chr7A	94.241	382	22	0	1	382	696785128	696784747	3.650000e-163	584.0
19	TraesCS2B01G001500	chr7A	91.123	383	33	1	1	382	238578254	238578636	3.760000e-143	518.0
20	TraesCS2B01G001500	chr7A	89.076	238	11	6	2317	2549	30968060	30968287	5.370000e-72	281.0
21	TraesCS2B01G001500	chr7A	93.583	187	10	2	385	570	238579134	238579319	6.950000e-71	278.0
22	TraesCS2B01G001500	chr7A	93.048	187	12	1	385	570	224041464	224041650	3.230000e-69	272.0
23	TraesCS2B01G001500	chr2A	91.443	2010	101	31	572	2549	611725136	611723166	0.000000e+00	2693.0
24	TraesCS2B01G001500	chr2A	88.559	236	15	5	2317	2549	742453082	742452856	2.500000e-70	276.0
25	TraesCS2B01G001500	chr5D	93.455	382	22	1	1	382	103643179	103643557	4.760000e-157	564.0
26	TraesCS2B01G001500	chr5D	86.047	172	22	2	400	570	547058971	547058801	1.560000e-42	183.0
27	TraesCS2B01G001500	chr4A	93.194	382	26	0	1	382	29180356	29180737	1.710000e-156	562.0
28	TraesCS2B01G001500	chr4A	93.048	187	12	1	385	570	29181237	29181423	3.230000e-69	272.0
29	TraesCS2B01G001500	chr7D	91.099	382	25	2	1	382	558920901	558921273	2.260000e-140	508.0
30	TraesCS2B01G001500	chr5A	93.249	237	5	4	2317	2549	553436179	553435950	3.140000e-89	339.0
31	TraesCS2B01G001500	chr5A	78.035	173	32	6	402	570	581473713	581473543	1.250000e-18	104.0
32	TraesCS2B01G001500	chr3D	92.797	236	6	2	2317	2549	527511338	527511565	5.260000e-87	331.0
33	TraesCS2B01G001500	chr3D	79.096	177	34	3	396	570	165447085	165446910	4.450000e-23	119.0
34	TraesCS2B01G001500	chr6A	93.514	185	12	0	386	570	80040329	80040145	2.500000e-70	276.0
35	TraesCS2B01G001500	chr6A	88.525	61	7	0	497	557	555745272	555745212	9.780000e-10	75.0
36	TraesCS2B01G001500	chr1D	88.710	186	10	4	385	570	279524480	279524306	1.540000e-52	217.0
37	TraesCS2B01G001500	chr1D	85.632	174	21	4	399	570	437279810	437279639	2.010000e-41	180.0
38	TraesCS2B01G001500	chr3A	82.659	173	30	0	1	173	489315398	489315570	1.220000e-33	154.0
39	TraesCS2B01G001500	chr6D	77.401	177	37	3	396	570	402326090	402325915	4.490000e-18	102.0
40	TraesCS2B01G001500	chr1B	86.842	76	8	2	497	570	633109568	633109643	1.630000e-12	84.2

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2B01G001500	chr2B	1180154	1182702	2548	False	4708	4708	100.000	1	2549	1	chr2B.!!$F1	2548
1	TraesCS2B01G001500	chr2B	710552486	710554482	1996	True	2710	2710	91.372	574	2549	1	chr2B.!!$R1	1975
2	TraesCS2B01G001500	chr2D	632386604	632388577	1973	False	3090	3090	94.907	572	2549	1	chr2D.!!$F4	1977
3	TraesCS2B01G001500	chr4D	43270762	43272763	2001	True	3027	3027	94.173	572	2549	1	chr4D.!!$R1	1977
4	TraesCS2B01G001500	chr3B	548772277	548774278	2001	False	2979	2979	93.769	575	2549	1	chr3B.!!$F2	1974
5	TraesCS2B01G001500	chr3B	548242939	548244935	1996	False	2865	2865	92.768	575	2549	1	chr3B.!!$F1	1974
6	TraesCS2B01G001500	chr3B	687026515	687027159	644	False	846	846	90.923	1925	2549	1	chr3B.!!$F3	624
7	TraesCS2B01G001500	chr5B	680228617	680230618	2001	True	2916	2916	93.177	572	2549	1	chr5B.!!$R2	1977
8	TraesCS2B01G001500	chr5B	508122526	508124524	1998	True	2891	2891	92.975	572	2549	1	chr5B.!!$R1	1977
9	TraesCS2B01G001500	chr7B	523397859	523399854	1995	True	2822	2822	92.380	572	2549	1	chr7B.!!$R2	1977
10	TraesCS2B01G001500	chr7B	523523080	523525076	1996	True	2822	2822	92.384	572	2549	1	chr7B.!!$R3	1977
11	TraesCS2B01G001500	chr7A	15645803	15647792	1989	False	2778	2778	92.056	572	2549	1	chr7A.!!$F1	1977
12	TraesCS2B01G001500	chr7A	238578254	238579319	1065	False	398	518	92.353	1	570	2	chr7A.!!$F4	569
13	TraesCS2B01G001500	chr2A	611723166	611725136	1970	True	2693	2693	91.443	572	2549	1	chr2A.!!$R1	1977
14	TraesCS2B01G001500	chr4A	29180356	29181423	1067	False	417	562	93.121	1	570	2	chr4A.!!$F1	569

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
906	1412	0.10412	CGGCGAGAGAGAGAGAGAGA	59.896	60.0	0.0	0.0	0.0	3.1	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2205	3190	1.21693	AGCCCTAAACACCACAAACCT	59.783	47.619	0.0	0.0	0.0	3.5	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
57	58	2.257409	AATAGCCCAGGGTGTGCTCG	62.257	60.000	7.55	0.00	36.57	5.03
77	78	2.131972	GGTTGAATGCGGTTTGGAAAC	58.868	47.619	0.00	0.00	38.17	2.78
196	197	0.916086	TACCCTTGATCCCGCAATGT	59.084	50.000	0.00	0.00	0.00	2.71
212	213	3.243367	GCAATGTCCACTGTGCAAAACTA	60.243	43.478	1.29	0.00	36.97	2.24
218	219	5.054477	GTCCACTGTGCAAAACTAGTCTAA	58.946	41.667	1.29	0.00	0.00	2.10
229	230	8.325787	TGCAAAACTAGTCTAAAGGATATCCAA	58.674	33.333	23.81	7.81	38.89	3.53
239	240	3.550437	AGGATATCCAACACTGTCTGC	57.450	47.619	23.81	0.00	38.89	4.26
247	249	2.201732	CAACACTGTCTGCTTACGTGT	58.798	47.619	0.00	10.96	38.12	4.49
260	262	3.549423	GCTTACGTGTATCCGTGCATCTA	60.549	47.826	0.00	0.00	41.92	1.98
286	288	2.550606	GTGGACTGCTCTAGGACTATCG	59.449	54.545	0.00	0.00	0.00	2.92
297	299	2.320781	AGGACTATCGGAGGTGATTGG	58.679	52.381	0.00	0.00	0.00	3.16
308	310	0.958822	GGTGATTGGACAAGCCGTTT	59.041	50.000	0.00	0.00	40.66	3.60
321	323	2.106683	CCGTTTGGCAGGACCGATC	61.107	63.158	0.00	0.00	43.94	3.69
355	357	6.096987	TCACCCTAGATATATTGATTCGGCTC	59.903	42.308	0.00	0.00	0.00	4.70
369	371	1.965930	GGCTCCGCACATTGACACA	60.966	57.895	0.00	0.00	0.00	3.72
382	384	5.647658	CACATTGACACATACCATACCAACT	59.352	40.000	0.00	0.00	0.00	3.16
383	385	6.150976	CACATTGACACATACCATACCAACTT	59.849	38.462	0.00	0.00	0.00	2.66
396	893	7.573710	ACCATACCAACTTGATTATGCTTCTA	58.426	34.615	0.00	0.00	0.00	2.10
438	935	1.936547	GAGAGGCAAACTTGATAGCGG	59.063	52.381	0.00	0.00	0.00	5.52
469	966	4.099266	AGCAAACCACTGTTTCAGCATTAA	59.901	37.500	0.00	0.00	42.73	1.40
486	983	7.500227	TCAGCATTAATAAATCAGAAGAGTGGG	59.500	37.037	0.00	0.00	0.00	4.61
487	984	7.500227	CAGCATTAATAAATCAGAAGAGTGGGA	59.500	37.037	0.00	0.00	0.00	4.37
488	985	7.718753	AGCATTAATAAATCAGAAGAGTGGGAG	59.281	37.037	0.00	0.00	0.00	4.30
489	986	7.716998	GCATTAATAAATCAGAAGAGTGGGAGA	59.283	37.037	0.00	0.00	0.00	3.71
490	987	9.270640	CATTAATAAATCAGAAGAGTGGGAGAG	57.729	37.037	0.00	0.00	0.00	3.20
491	988	3.625649	AAATCAGAAGAGTGGGAGAGC	57.374	47.619	0.00	0.00	0.00	4.09
492	989	2.244486	ATCAGAAGAGTGGGAGAGCA	57.756	50.000	0.00	0.00	0.00	4.26
493	990	2.244486	TCAGAAGAGTGGGAGAGCAT	57.756	50.000	0.00	0.00	0.00	3.79
494	991	2.544721	TCAGAAGAGTGGGAGAGCATT	58.455	47.619	0.00	0.00	0.00	3.56
495	992	2.235650	TCAGAAGAGTGGGAGAGCATTG	59.764	50.000	0.00	0.00	0.00	2.82
496	993	2.027377	CAGAAGAGTGGGAGAGCATTGT	60.027	50.000	0.00	0.00	0.00	2.71
497	994	2.235898	AGAAGAGTGGGAGAGCATTGTC	59.764	50.000	0.00	0.00	0.00	3.18
498	995	0.908198	AGAGTGGGAGAGCATTGTCC	59.092	55.000	0.00	0.00	36.03	4.02
503	1000	3.467776	GGAGAGCATTGTCCCTGAC	57.532	57.895	0.00	0.00	30.56	3.51
504	1001	0.908198	GGAGAGCATTGTCCCTGACT	59.092	55.000	0.00	0.00	33.15	3.41
505	1002	1.280421	GGAGAGCATTGTCCCTGACTT	59.720	52.381	0.00	0.00	33.15	3.01
506	1003	2.290577	GGAGAGCATTGTCCCTGACTTT	60.291	50.000	0.00	0.00	33.15	2.66
507	1004	3.055094	GGAGAGCATTGTCCCTGACTTTA	60.055	47.826	0.00	0.00	33.15	1.85
508	1005	4.384647	GGAGAGCATTGTCCCTGACTTTAT	60.385	45.833	0.00	0.00	33.15	1.40
509	1006	5.184892	AGAGCATTGTCCCTGACTTTATT	57.815	39.130	0.00	0.00	33.15	1.40
510	1007	5.189180	AGAGCATTGTCCCTGACTTTATTC	58.811	41.667	0.00	0.00	33.15	1.75
511	1008	5.045286	AGAGCATTGTCCCTGACTTTATTCT	60.045	40.000	0.00	0.00	33.15	2.40
512	1009	5.574188	AGCATTGTCCCTGACTTTATTCTT	58.426	37.500	0.00	0.00	33.15	2.52
513	1010	5.649831	AGCATTGTCCCTGACTTTATTCTTC	59.350	40.000	0.00	0.00	33.15	2.87
514	1011	5.415701	GCATTGTCCCTGACTTTATTCTTCA	59.584	40.000	0.00	0.00	33.15	3.02
515	1012	6.623767	GCATTGTCCCTGACTTTATTCTTCAC	60.624	42.308	0.00	0.00	33.15	3.18
516	1013	4.906618	TGTCCCTGACTTTATTCTTCACC	58.093	43.478	0.00	0.00	33.15	4.02
517	1014	4.349636	TGTCCCTGACTTTATTCTTCACCA	59.650	41.667	0.00	0.00	33.15	4.17
518	1015	5.014123	TGTCCCTGACTTTATTCTTCACCAT	59.986	40.000	0.00	0.00	33.15	3.55
519	1016	5.946377	GTCCCTGACTTTATTCTTCACCATT	59.054	40.000	0.00	0.00	0.00	3.16
520	1017	7.110155	GTCCCTGACTTTATTCTTCACCATTA	58.890	38.462	0.00	0.00	0.00	1.90
521	1018	7.775561	GTCCCTGACTTTATTCTTCACCATTAT	59.224	37.037	0.00	0.00	0.00	1.28
522	1019	7.775093	TCCCTGACTTTATTCTTCACCATTATG	59.225	37.037	0.00	0.00	0.00	1.90
523	1020	7.557719	CCCTGACTTTATTCTTCACCATTATGT	59.442	37.037	0.00	0.00	0.00	2.29
524	1021	9.613428	CCTGACTTTATTCTTCACCATTATGTA	57.387	33.333	0.00	0.00	0.00	2.29
535	1032	9.295825	TCTTCACCATTATGTAAACAATCTTGT	57.704	29.630	0.00	0.00	44.72	3.16
682	1179	2.007049	GCACCGACTCGTTCCATGAAT	61.007	52.381	0.00	0.00	0.00	2.57
685	1182	2.028476	ACCGACTCGTTCCATGAATTCA	60.028	45.455	11.26	11.26	0.00	2.57
738	1235	0.840722	CCTTACAGGTGGGACCAGGT	60.841	60.000	0.00	0.00	41.95	4.00
762	1260	3.243068	GCGAGACGGCCAATTTTATTCAT	60.243	43.478	2.24	0.00	0.00	2.57
906	1412	0.104120	CGGCGAGAGAGAGAGAGAGA	59.896	60.000	0.00	0.00	0.00	3.10
910	1416	2.737359	GCGAGAGAGAGAGAGAGAACGA	60.737	54.545	0.00	0.00	0.00	3.85
1125	1632	2.996621	GGTTTCTCACACATCGAGGAAG	59.003	50.000	3.06	0.00	28.39	3.46
1171	1678	2.771943	AGCGAGAATGGGGTAAGAATCA	59.228	45.455	0.00	0.00	0.00	2.57
1174	1681	3.388024	CGAGAATGGGGTAAGAATCAGGA	59.612	47.826	0.00	0.00	0.00	3.86
1401	1983	2.799562	CGAAGCACACACTGACAGAGAA	60.800	50.000	10.08	0.00	0.00	2.87
1428	2010	4.378874	GCTGTTGAGCTTAGGATGTTGAAC	60.379	45.833	0.00	0.00	42.52	3.18
1618	2209	9.410556	CCTAGTTTAAATGTTGATCAAAGTTGG	57.589	33.333	10.35	2.67	0.00	3.77
1706	2302	9.485206	AAATGAGGAATTCAGAAACTTTTGATG	57.515	29.630	7.93	0.00	39.68	3.07
1772	2371	1.203287	GCTCTTGGGCCAAATTCAGAC	59.797	52.381	21.28	4.95	0.00	3.51
2036	3018	8.987890	CCGTGATTTAAATCAAAGACCAAAATT	58.012	29.630	28.02	0.00	46.13	1.82
2055	3037	3.959535	TTTCATGGAAAATGTGCCTCC	57.040	42.857	0.00	0.00	0.00	4.30
2169	3153	3.807553	AGGGTGGAAAATGCACAAAAAG	58.192	40.909	4.42	0.00	40.73	2.27
2205	3190	1.228521	TCGAACCCAGGACCGTGTA	60.229	57.895	0.00	0.00	0.00	2.90
2311	3299	6.757897	AGTGAGACTGTGAAATTTGTCAAA	57.242	33.333	0.00	0.00	32.41	2.69
2343	3333	1.064803	GACCGTGAATGTTTGCACACA	59.935	47.619	8.36	8.36	35.03	3.72
2374	3364	5.046950	AGTGGTTTTCCTTTGTTTTGCACTA	60.047	36.000	0.00	0.00	41.38	2.74
2461	3474	6.496911	AGTGGCACTTGGTTTAGGATTTAAAT	59.503	34.615	15.88	0.00	0.00	1.40

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
50	51	2.324330	CCGCATTCAACCGAGCACA	61.324	57.895	0.00	0.00	0.00	4.57
57	58	2.131972	GTTTCCAAACCGCATTCAACC	58.868	47.619	0.00	0.00	32.82	3.77
107	108	4.441792	ACTTTCCAGCCAAAATGTTTGAC	58.558	39.130	2.30	0.00	0.00	3.18
196	197	3.838244	AGACTAGTTTTGCACAGTGGA	57.162	42.857	1.84	0.00	0.00	4.02
212	213	6.670027	AGACAGTGTTGGATATCCTTTAGACT	59.330	38.462	22.35	16.70	36.82	3.24
218	219	3.521126	AGCAGACAGTGTTGGATATCCTT	59.479	43.478	22.35	0.94	36.82	3.36
229	230	3.367087	GGATACACGTAAGCAGACAGTGT	60.367	47.826	16.42	16.42	46.22	3.55
239	240	3.079960	AGATGCACGGATACACGTAAG	57.920	47.619	0.00	0.00	46.75	2.34
247	249	3.449377	TCCACACTTTAGATGCACGGATA	59.551	43.478	0.00	0.00	0.00	2.59
260	262	2.300437	GTCCTAGAGCAGTCCACACTTT	59.700	50.000	0.00	0.00	0.00	2.66
286	288	1.026718	CGGCTTGTCCAATCACCTCC	61.027	60.000	0.00	0.00	34.01	4.30
328	330	7.785028	AGCCGAATCAATATATCTAGGGTGATA	59.215	37.037	0.00	0.00	33.99	2.15
355	357	1.447945	TGGTATGTGTCAATGTGCGG	58.552	50.000	0.00	0.00	0.00	5.69
369	371	8.220559	AGAAGCATAATCAAGTTGGTATGGTAT	58.779	33.333	21.87	15.29	34.49	2.73
410	907	5.392767	TCAAGTTTGCCTCTCTACTACAG	57.607	43.478	0.00	0.00	0.00	2.74
469	966	4.718774	TGCTCTCCCACTCTTCTGATTTAT	59.281	41.667	0.00	0.00	0.00	1.40
486	983	2.777832	AAGTCAGGGACAATGCTCTC	57.222	50.000	0.00	0.00	34.60	3.20
487	984	4.851639	ATAAAGTCAGGGACAATGCTCT	57.148	40.909	0.00	0.00	34.60	4.09
488	985	5.189180	AGAATAAAGTCAGGGACAATGCTC	58.811	41.667	0.00	0.00	34.60	4.26
489	986	5.184892	AGAATAAAGTCAGGGACAATGCT	57.815	39.130	0.00	0.00	34.60	3.79
490	987	5.415701	TGAAGAATAAAGTCAGGGACAATGC	59.584	40.000	0.00	0.00	34.60	3.56
491	988	6.127897	GGTGAAGAATAAAGTCAGGGACAATG	60.128	42.308	0.00	0.00	34.60	2.82
492	989	5.946377	GGTGAAGAATAAAGTCAGGGACAAT	59.054	40.000	0.00	0.00	34.60	2.71
493	990	5.163141	TGGTGAAGAATAAAGTCAGGGACAA	60.163	40.000	0.00	0.00	34.60	3.18
494	991	4.349636	TGGTGAAGAATAAAGTCAGGGACA	59.650	41.667	0.00	0.00	34.60	4.02
495	992	4.906618	TGGTGAAGAATAAAGTCAGGGAC	58.093	43.478	0.00	0.00	0.00	4.46
496	993	5.779241	ATGGTGAAGAATAAAGTCAGGGA	57.221	39.130	0.00	0.00	0.00	4.20
497	994	7.557719	ACATAATGGTGAAGAATAAAGTCAGGG	59.442	37.037	0.00	0.00	0.00	4.45
498	995	8.511604	ACATAATGGTGAAGAATAAAGTCAGG	57.488	34.615	0.00	0.00	0.00	3.86
509	1006	9.295825	ACAAGATTGTTTACATAATGGTGAAGA	57.704	29.630	0.00	0.00	38.47	2.87
558	1055	9.945633	AGGATAATTAACCCCTTTTTAGCATAA	57.054	29.630	8.09	0.00	0.00	1.90
559	1056	9.945633	AAGGATAATTAACCCCTTTTTAGCATA	57.054	29.630	8.09	0.00	35.64	3.14
560	1057	8.854237	AAGGATAATTAACCCCTTTTTAGCAT	57.146	30.769	8.09	0.00	35.64	3.79
561	1058	8.673456	AAAGGATAATTAACCCCTTTTTAGCA	57.327	30.769	17.29	0.00	44.09	3.49
567	1064	8.419376	AAGGGCAAAAGGATAATTAACCCCTTT	61.419	37.037	17.29	17.29	44.42	3.11
568	1065	4.719773	GGGCAAAAGGATAATTAACCCCTT	59.280	41.667	8.09	9.14	40.46	3.95
569	1066	4.015636	AGGGCAAAAGGATAATTAACCCCT	60.016	41.667	8.09	4.09	35.29	4.79
570	1067	4.295201	AGGGCAAAAGGATAATTAACCCC	58.705	43.478	8.09	2.43	35.29	4.95
852	1354	2.910479	TCTGTCGCCGTGGTCACT	60.910	61.111	0.00	0.00	0.00	3.41
906	1412	1.590147	CTAGCTTCCCACCGTCGTT	59.410	57.895	0.00	0.00	0.00	3.85
910	1416	1.913762	ACAGCTAGCTTCCCACCGT	60.914	57.895	16.46	5.02	0.00	4.83
1125	1632	1.189403	CGTAGAACGGACGATTCTGC	58.811	55.000	14.97	13.29	42.98	4.26
1171	1678	4.057432	CACGAAAATGGTGCAATTTTCCT	58.943	39.130	22.19	13.26	46.69	3.36
1198	1705	4.038271	TCAACCCATTGCTCAAAGATCT	57.962	40.909	0.00	0.00	35.63	2.75
1223	1730	2.297033	GTCACCTGCATGAACACCAAAT	59.703	45.455	0.00	0.00	0.00	2.32
1428	2010	5.308825	TCTTCAAGCTTCCTAACCTTCTTG	58.691	41.667	0.00	0.00	34.04	3.02
1637	2232	9.912634	ACATATTTAAATGTTGGTCACTTCTTG	57.087	29.630	11.05	0.00	36.71	3.02
1772	2371	1.448540	CCTGCACTTGGCTCTACGG	60.449	63.158	0.00	0.00	45.15	4.02
2036	3018	1.818060	CGGAGGCACATTTTCCATGAA	59.182	47.619	0.00	0.00	0.00	2.57
2055	3037	2.416972	GGTGTAAACCTCTACCAGAGCG	60.417	54.545	0.00	0.00	40.98	5.03
2205	3190	1.216930	AGCCCTAAACACCACAAACCT	59.783	47.619	0.00	0.00	0.00	3.50
2343	3333	2.943033	CAAAGGAAAACCACTCTCACGT	59.057	45.455	0.00	0.00	0.00	4.49
2374	3364	4.044308	ACCTTCCAACCCTCCAAAATTTT	58.956	39.130	0.00	0.00	0.00	1.82

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.