Multiple sequence alignment - TraesCS2B01G001100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G001100 chr2B 100.000 3536 0 0 1 3536 476214 479749 0.000000e+00 6530.0
1 TraesCS2B01G001100 chr2B 94.756 1964 78 5 772 2711 63696 65658 0.000000e+00 3033.0
2 TraesCS2B01G001100 chr2B 93.992 1964 83 9 772 2711 177953 179905 0.000000e+00 2940.0
3 TraesCS2B01G001100 chr2B 82.260 1522 227 33 1063 2568 9198995 9197501 0.000000e+00 1275.0
4 TraesCS2B01G001100 chr2B 79.204 1885 309 49 1049 2884 30990142 30988292 0.000000e+00 1232.0
5 TraesCS2B01G001100 chr2B 80.273 1683 272 49 1049 2708 31047888 31049533 0.000000e+00 1214.0
6 TraesCS2B01G001100 chr2B 79.715 1612 279 26 974 2569 454670187 454668608 0.000000e+00 1122.0
7 TraesCS2B01G001100 chr2B 92.151 688 48 6 2713 3398 179937 180620 0.000000e+00 966.0
8 TraesCS2B01G001100 chr2B 91.994 687 50 5 2714 3398 65691 66374 0.000000e+00 959.0
9 TraesCS2B01G001100 chr2B 90.625 320 15 6 458 762 63304 63623 9.140000e-111 411.0
10 TraesCS2B01G001100 chr2B 90.625 320 15 6 458 762 177561 177880 9.140000e-111 411.0
11 TraesCS2B01G001100 chr2B 94.326 141 8 0 3396 3536 69439 69579 2.140000e-52 217.0
12 TraesCS2B01G001100 chr2A 92.111 1483 100 5 1236 2711 1915777 1917249 0.000000e+00 2074.0
13 TraesCS2B01G001100 chr2A 81.894 1679 253 36 1049 2708 2876249 2877895 0.000000e+00 1369.0
14 TraesCS2B01G001100 chr2A 81.527 1532 237 24 1032 2543 2405968 2407473 0.000000e+00 1219.0
15 TraesCS2B01G001100 chr2A 86.680 991 97 13 906 1896 1883749 1884704 0.000000e+00 1066.0
16 TraesCS2B01G001100 chr2A 90.698 731 55 11 1810 2536 1884701 1885422 0.000000e+00 961.0
17 TraesCS2B01G001100 chr2A 91.184 397 30 2 2713 3104 1917281 1917677 5.200000e-148 534.0
18 TraesCS2B01G001100 chr2A 89.000 300 27 5 3103 3398 1918132 1918429 2.010000e-97 366.0
19 TraesCS2B01G001100 chr2A 84.746 236 23 4 501 736 1908221 1908443 1.280000e-54 224.0
20 TraesCS2B01G001100 chr2A 80.936 299 21 12 458 743 1881755 1882030 1.660000e-48 204.0
21 TraesCS2B01G001100 chr2A 85.185 162 10 6 772 920 1882823 1882983 1.700000e-33 154.0
22 TraesCS2B01G001100 chr2A 100.000 30 0 0 2971 3000 200889434 200889463 4.930000e-04 56.5
23 TraesCS2B01G001100 chr2D 94.671 1201 64 0 1394 2594 2014475 2015675 0.000000e+00 1864.0
24 TraesCS2B01G001100 chr2D 96.118 541 18 3 772 1309 2013945 2014485 0.000000e+00 880.0
25 TraesCS2B01G001100 chr2D 81.209 761 129 11 1027 1777 2237396 2238152 5.050000e-168 601.0
26 TraesCS2B01G001100 chr2D 91.736 242 19 1 496 736 2013122 2013363 5.660000e-88 335.0
27 TraesCS2B01G001100 chr2D 87.662 154 17 2 587 739 2150237 2150389 1.010000e-40 178.0
28 TraesCS2B01G001100 chr2D 97.436 39 1 0 772 810 2165411 2165449 2.280000e-07 67.6
29 TraesCS2B01G001100 chrUn 79.752 1610 282 22 974 2569 337610921 337612500 0.000000e+00 1127.0
30 TraesCS2B01G001100 chr5D 94.872 39 0 2 2971 3008 406213254 406213217 3.810000e-05 60.2
31 TraesCS2B01G001100 chr6B 100.000 30 0 0 2971 3000 345463785 345463756 4.930000e-04 56.5
32 TraesCS2B01G001100 chr6A 100.000 30 0 0 2971 3000 340035663 340035634 4.930000e-04 56.5
33 TraesCS2B01G001100 chr5B 92.105 38 3 0 2971 3008 486911228 486911191 2.000000e-03 54.7
34 TraesCS2B01G001100 chr3D 92.308 39 1 2 2971 3008 596055425 596055388 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G001100 chr2B 476214 479749 3535 False 6530.000000 6530 100.00000 1 3536 1 chr2B.!!$F1 3535
1 TraesCS2B01G001100 chr2B 177561 180620 3059 False 1439.000000 2940 92.25600 458 3398 3 chr2B.!!$F4 2940
2 TraesCS2B01G001100 chr2B 9197501 9198995 1494 True 1275.000000 1275 82.26000 1063 2568 1 chr2B.!!$R1 1505
3 TraesCS2B01G001100 chr2B 30988292 30990142 1850 True 1232.000000 1232 79.20400 1049 2884 1 chr2B.!!$R2 1835
4 TraesCS2B01G001100 chr2B 31047888 31049533 1645 False 1214.000000 1214 80.27300 1049 2708 1 chr2B.!!$F2 1659
5 TraesCS2B01G001100 chr2B 63304 69579 6275 False 1155.000000 3033 92.92525 458 3536 4 chr2B.!!$F3 3078
6 TraesCS2B01G001100 chr2B 454668608 454670187 1579 True 1122.000000 1122 79.71500 974 2569 1 chr2B.!!$R3 1595
7 TraesCS2B01G001100 chr2A 2876249 2877895 1646 False 1369.000000 1369 81.89400 1049 2708 1 chr2A.!!$F3 1659
8 TraesCS2B01G001100 chr2A 2405968 2407473 1505 False 1219.000000 1219 81.52700 1032 2543 1 chr2A.!!$F2 1511
9 TraesCS2B01G001100 chr2A 1915777 1918429 2652 False 991.333333 2074 90.76500 1236 3398 3 chr2A.!!$F6 2162
10 TraesCS2B01G001100 chr2A 1881755 1885422 3667 False 596.250000 1066 85.87475 458 2536 4 chr2A.!!$F5 2078
11 TraesCS2B01G001100 chr2D 2013122 2015675 2553 False 1026.333333 1864 94.17500 496 2594 3 chr2D.!!$F4 2098
12 TraesCS2B01G001100 chr2D 2237396 2238152 756 False 601.000000 601 81.20900 1027 1777 1 chr2D.!!$F3 750
13 TraesCS2B01G001100 chrUn 337610921 337612500 1579 False 1127.000000 1127 79.75200 974 2569 1 chrUn.!!$F1 1595

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
192 193 0.030638 GCTCAGGAAAGTGCGCAAAA 59.969 50.0 14.00 0.00 0.00 2.44 F
259 260 0.102481 AGCGATTCGGCGACTGTAAT 59.898 50.0 10.16 0.00 38.18 1.89 F
260 261 0.503117 GCGATTCGGCGACTGTAATC 59.497 55.0 10.16 8.89 0.00 1.75 F
1496 3159 0.678395 CTCTCCTACATGGCGAGCAT 59.322 55.0 0.00 0.00 40.34 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1496 3159 0.878523 CACGTCAAAAGGAGTGCCGA 60.879 55.000 0.0 0.0 39.96 5.54 R
1713 3377 1.633852 GCGCTGTGGAGAGCTTTCTG 61.634 60.000 0.0 0.0 41.50 3.02 R
1827 3516 2.054021 TCCACACCATCTTGTTCCTCA 58.946 47.619 0.0 0.0 0.00 3.86 R
3453 8843 0.315251 TGACTCTCACCTTGCACTCG 59.685 55.000 0.0 0.0 0.00 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.585099 TTAATTTGCTATATTCCTTTGTTGCTG 57.415 29.630 0.00 0.00 0.00 4.41
27 28 4.637483 TGCTATATTCCTTTGTTGCTGC 57.363 40.909 0.00 0.00 0.00 5.25
28 29 4.272489 TGCTATATTCCTTTGTTGCTGCT 58.728 39.130 0.00 0.00 0.00 4.24
29 30 4.706476 TGCTATATTCCTTTGTTGCTGCTT 59.294 37.500 0.00 0.00 0.00 3.91
30 31 5.185635 TGCTATATTCCTTTGTTGCTGCTTT 59.814 36.000 0.00 0.00 0.00 3.51
31 32 6.101997 GCTATATTCCTTTGTTGCTGCTTTT 58.898 36.000 0.00 0.00 0.00 2.27
32 33 6.254373 GCTATATTCCTTTGTTGCTGCTTTTC 59.746 38.462 0.00 0.00 0.00 2.29
33 34 2.888834 TCCTTTGTTGCTGCTTTTCC 57.111 45.000 0.00 0.00 0.00 3.13
34 35 2.387757 TCCTTTGTTGCTGCTTTTCCT 58.612 42.857 0.00 0.00 0.00 3.36
35 36 2.101249 TCCTTTGTTGCTGCTTTTCCTG 59.899 45.455 0.00 0.00 0.00 3.86
36 37 2.476821 CTTTGTTGCTGCTTTTCCTGG 58.523 47.619 0.00 0.00 0.00 4.45
37 38 0.104671 TTGTTGCTGCTTTTCCTGGC 59.895 50.000 0.00 0.00 0.00 4.85
38 39 1.042003 TGTTGCTGCTTTTCCTGGCA 61.042 50.000 0.00 0.00 36.94 4.92
43 44 3.751767 TGCTTTTCCTGGCAGATGT 57.248 47.368 17.94 0.00 34.22 3.06
44 45 2.877097 TGCTTTTCCTGGCAGATGTA 57.123 45.000 17.94 0.00 34.22 2.29
45 46 3.153369 TGCTTTTCCTGGCAGATGTAA 57.847 42.857 17.94 1.71 34.22 2.41
46 47 2.819608 TGCTTTTCCTGGCAGATGTAAC 59.180 45.455 17.94 1.75 34.22 2.50
47 48 2.819608 GCTTTTCCTGGCAGATGTAACA 59.180 45.455 17.94 0.00 0.00 2.41
48 49 3.445096 GCTTTTCCTGGCAGATGTAACAT 59.555 43.478 17.94 0.00 0.00 2.71
49 50 4.676196 GCTTTTCCTGGCAGATGTAACATG 60.676 45.833 17.94 0.00 0.00 3.21
50 51 2.715749 TCCTGGCAGATGTAACATGG 57.284 50.000 17.94 0.00 0.00 3.66
51 52 2.195727 TCCTGGCAGATGTAACATGGA 58.804 47.619 17.94 0.00 0.00 3.41
52 53 2.575735 TCCTGGCAGATGTAACATGGAA 59.424 45.455 17.94 0.00 0.00 3.53
53 54 2.684881 CCTGGCAGATGTAACATGGAAC 59.315 50.000 17.94 0.00 0.00 3.62
54 55 2.352651 CTGGCAGATGTAACATGGAACG 59.647 50.000 9.42 0.00 0.00 3.95
55 56 1.670811 GGCAGATGTAACATGGAACGG 59.329 52.381 0.00 0.00 0.00 4.44
56 57 2.356135 GCAGATGTAACATGGAACGGT 58.644 47.619 0.00 0.00 0.00 4.83
57 58 2.095853 GCAGATGTAACATGGAACGGTG 59.904 50.000 0.00 0.00 0.00 4.94
58 59 2.677836 CAGATGTAACATGGAACGGTGG 59.322 50.000 0.00 0.00 0.00 4.61
59 60 2.014128 GATGTAACATGGAACGGTGGG 58.986 52.381 0.00 0.00 0.00 4.61
60 61 0.766131 TGTAACATGGAACGGTGGGT 59.234 50.000 0.00 0.00 0.00 4.51
61 62 1.976404 TGTAACATGGAACGGTGGGTA 59.024 47.619 0.00 0.00 0.00 3.69
62 63 2.572556 TGTAACATGGAACGGTGGGTAT 59.427 45.455 0.00 0.00 0.00 2.73
63 64 2.413310 AACATGGAACGGTGGGTATC 57.587 50.000 0.00 0.00 0.00 2.24
64 65 0.544697 ACATGGAACGGTGGGTATCC 59.455 55.000 0.00 0.00 0.00 2.59
72 73 4.157607 GTGGGTATCCGCCATTGG 57.842 61.111 0.00 0.00 37.58 3.16
73 74 2.193536 GTGGGTATCCGCCATTGGC 61.194 63.158 18.10 18.10 46.75 4.52
87 88 3.919216 CCATTGGCAAAATAAACGGTCA 58.081 40.909 3.01 0.00 0.00 4.02
88 89 3.925913 CCATTGGCAAAATAAACGGTCAG 59.074 43.478 3.01 0.00 0.00 3.51
89 90 4.321601 CCATTGGCAAAATAAACGGTCAGA 60.322 41.667 3.01 0.00 0.00 3.27
90 91 5.410067 CATTGGCAAAATAAACGGTCAGAT 58.590 37.500 3.01 0.00 0.00 2.90
91 92 5.461032 TTGGCAAAATAAACGGTCAGATT 57.539 34.783 0.00 0.00 0.00 2.40
92 93 5.054390 TGGCAAAATAAACGGTCAGATTC 57.946 39.130 0.00 0.00 0.00 2.52
93 94 4.764823 TGGCAAAATAAACGGTCAGATTCT 59.235 37.500 0.00 0.00 0.00 2.40
94 95 5.242838 TGGCAAAATAAACGGTCAGATTCTT 59.757 36.000 0.00 0.00 0.00 2.52
95 96 5.800438 GGCAAAATAAACGGTCAGATTCTTC 59.200 40.000 0.00 0.00 0.00 2.87
96 97 6.349363 GGCAAAATAAACGGTCAGATTCTTCT 60.349 38.462 0.00 0.00 0.00 2.85
97 98 7.084486 GCAAAATAAACGGTCAGATTCTTCTT 58.916 34.615 0.00 0.00 0.00 2.52
98 99 7.271438 GCAAAATAAACGGTCAGATTCTTCTTC 59.729 37.037 0.00 0.00 0.00 2.87
99 100 8.507249 CAAAATAAACGGTCAGATTCTTCTTCT 58.493 33.333 0.00 0.00 0.00 2.85
100 101 7.835634 AATAAACGGTCAGATTCTTCTTCTC 57.164 36.000 0.00 0.00 0.00 2.87
101 102 4.873746 AACGGTCAGATTCTTCTTCTCA 57.126 40.909 0.00 0.00 0.00 3.27
102 103 4.448537 ACGGTCAGATTCTTCTTCTCAG 57.551 45.455 0.00 0.00 0.00 3.35
103 104 3.186119 CGGTCAGATTCTTCTTCTCAGC 58.814 50.000 0.00 0.00 0.00 4.26
104 105 3.367806 CGGTCAGATTCTTCTTCTCAGCA 60.368 47.826 0.00 0.00 0.00 4.41
105 106 4.573900 GGTCAGATTCTTCTTCTCAGCAA 58.426 43.478 0.00 0.00 0.00 3.91
106 107 4.999950 GGTCAGATTCTTCTTCTCAGCAAA 59.000 41.667 0.00 0.00 0.00 3.68
107 108 5.647225 GGTCAGATTCTTCTTCTCAGCAAAT 59.353 40.000 0.00 0.00 0.00 2.32
108 109 6.820656 GGTCAGATTCTTCTTCTCAGCAAATA 59.179 38.462 0.00 0.00 0.00 1.40
109 110 7.335422 GGTCAGATTCTTCTTCTCAGCAAATAA 59.665 37.037 0.00 0.00 0.00 1.40
110 111 8.725148 GTCAGATTCTTCTTCTCAGCAAATAAA 58.275 33.333 0.00 0.00 0.00 1.40
111 112 9.458727 TCAGATTCTTCTTCTCAGCAAATAAAT 57.541 29.630 0.00 0.00 0.00 1.40
112 113 9.504710 CAGATTCTTCTTCTCAGCAAATAAATG 57.495 33.333 0.00 0.00 0.00 2.32
113 114 8.684520 AGATTCTTCTTCTCAGCAAATAAATGG 58.315 33.333 0.00 0.00 0.00 3.16
114 115 7.765695 TTCTTCTTCTCAGCAAATAAATGGT 57.234 32.000 0.00 0.00 0.00 3.55
115 116 7.383102 TCTTCTTCTCAGCAAATAAATGGTC 57.617 36.000 0.00 0.00 0.00 4.02
116 117 5.801350 TCTTCTCAGCAAATAAATGGTCG 57.199 39.130 0.00 0.00 0.00 4.79
117 118 4.635765 TCTTCTCAGCAAATAAATGGTCGG 59.364 41.667 0.00 0.00 0.00 4.79
118 119 4.214986 TCTCAGCAAATAAATGGTCGGA 57.785 40.909 0.00 0.00 0.00 4.55
119 120 4.191544 TCTCAGCAAATAAATGGTCGGAG 58.808 43.478 0.00 0.00 0.00 4.63
120 121 3.941483 CTCAGCAAATAAATGGTCGGAGT 59.059 43.478 0.00 0.00 0.00 3.85
121 122 3.689161 TCAGCAAATAAATGGTCGGAGTG 59.311 43.478 0.00 0.00 0.00 3.51
122 123 3.016736 AGCAAATAAATGGTCGGAGTGG 58.983 45.455 0.00 0.00 0.00 4.00
123 124 2.479560 GCAAATAAATGGTCGGAGTGGC 60.480 50.000 0.00 0.00 0.00 5.01
124 125 1.663695 AATAAATGGTCGGAGTGGCG 58.336 50.000 0.00 0.00 0.00 5.69
125 126 0.828022 ATAAATGGTCGGAGTGGCGA 59.172 50.000 0.00 0.00 0.00 5.54
126 127 0.174845 TAAATGGTCGGAGTGGCGAG 59.825 55.000 0.00 0.00 0.00 5.03
127 128 3.665675 AATGGTCGGAGTGGCGAGC 62.666 63.158 0.00 0.00 0.00 5.03
133 134 4.057428 GGAGTGGCGAGCACGTCT 62.057 66.667 10.01 3.90 44.93 4.18
134 135 2.807045 GAGTGGCGAGCACGTCTG 60.807 66.667 10.01 0.00 44.93 3.51
135 136 4.363990 AGTGGCGAGCACGTCTGG 62.364 66.667 10.01 0.00 44.93 3.86
136 137 4.664677 GTGGCGAGCACGTCTGGT 62.665 66.667 10.01 0.00 44.93 4.00
145 146 3.458872 CACGTCTGGTGTATGGCAT 57.541 52.632 4.88 4.88 41.89 4.40
146 147 1.737838 CACGTCTGGTGTATGGCATT 58.262 50.000 4.78 0.00 41.89 3.56
147 148 1.398041 CACGTCTGGTGTATGGCATTG 59.602 52.381 4.78 0.00 41.89 2.82
148 149 0.378257 CGTCTGGTGTATGGCATTGC 59.622 55.000 4.78 0.00 0.00 3.56
166 167 4.735132 CGAAGGGCACGCCGAAGA 62.735 66.667 1.14 0.00 36.85 2.87
167 168 2.358247 GAAGGGCACGCCGAAGAA 60.358 61.111 1.14 0.00 36.85 2.52
168 169 2.358737 AAGGGCACGCCGAAGAAG 60.359 61.111 1.14 0.00 36.85 2.85
171 172 3.491652 GGCACGCCGAAGAAGCTC 61.492 66.667 0.00 0.00 0.00 4.09
172 173 2.433318 GCACGCCGAAGAAGCTCT 60.433 61.111 0.00 0.00 0.00 4.09
173 174 2.734673 GCACGCCGAAGAAGCTCTG 61.735 63.158 0.00 0.00 0.00 3.35
174 175 2.433318 ACGCCGAAGAAGCTCTGC 60.433 61.111 0.00 0.00 0.00 4.26
175 176 2.125753 CGCCGAAGAAGCTCTGCT 60.126 61.111 0.00 0.00 42.56 4.24
176 177 2.164026 CGCCGAAGAAGCTCTGCTC 61.164 63.158 0.00 0.00 38.25 4.26
177 178 1.079543 GCCGAAGAAGCTCTGCTCA 60.080 57.895 0.00 0.00 38.25 4.26
178 179 1.083242 GCCGAAGAAGCTCTGCTCAG 61.083 60.000 0.00 0.00 38.25 3.35
179 180 0.459934 CCGAAGAAGCTCTGCTCAGG 60.460 60.000 0.00 0.00 38.25 3.86
180 181 0.529833 CGAAGAAGCTCTGCTCAGGA 59.470 55.000 0.00 0.00 38.25 3.86
181 182 1.067283 CGAAGAAGCTCTGCTCAGGAA 60.067 52.381 0.00 0.00 38.25 3.36
182 183 2.611473 CGAAGAAGCTCTGCTCAGGAAA 60.611 50.000 0.00 0.00 38.25 3.13
183 184 2.766345 AGAAGCTCTGCTCAGGAAAG 57.234 50.000 0.00 0.00 38.25 2.62
184 185 1.977129 AGAAGCTCTGCTCAGGAAAGT 59.023 47.619 0.00 0.00 38.25 2.66
185 186 2.075338 GAAGCTCTGCTCAGGAAAGTG 58.925 52.381 0.00 0.00 38.25 3.16
186 187 0.321475 AGCTCTGCTCAGGAAAGTGC 60.321 55.000 0.00 0.00 30.62 4.40
187 188 1.633852 GCTCTGCTCAGGAAAGTGCG 61.634 60.000 0.00 0.00 0.00 5.34
188 189 1.633852 CTCTGCTCAGGAAAGTGCGC 61.634 60.000 0.00 0.00 0.00 6.09
189 190 1.962822 CTGCTCAGGAAAGTGCGCA 60.963 57.895 5.66 5.66 35.83 6.09
190 191 1.509644 CTGCTCAGGAAAGTGCGCAA 61.510 55.000 14.00 0.00 37.69 4.85
191 192 1.100463 TGCTCAGGAAAGTGCGCAAA 61.100 50.000 14.00 0.00 35.28 3.68
192 193 0.030638 GCTCAGGAAAGTGCGCAAAA 59.969 50.000 14.00 0.00 0.00 2.44
193 194 1.336240 GCTCAGGAAAGTGCGCAAAAT 60.336 47.619 14.00 0.00 0.00 1.82
194 195 2.322161 CTCAGGAAAGTGCGCAAAATG 58.678 47.619 14.00 5.78 0.00 2.32
195 196 1.680735 TCAGGAAAGTGCGCAAAATGT 59.319 42.857 14.00 0.00 0.00 2.71
196 197 1.788308 CAGGAAAGTGCGCAAAATGTG 59.212 47.619 14.00 1.57 0.00 3.21
197 198 1.139163 GGAAAGTGCGCAAAATGTGG 58.861 50.000 14.00 0.00 0.00 4.17
198 199 1.269517 GGAAAGTGCGCAAAATGTGGA 60.270 47.619 14.00 0.00 0.00 4.02
199 200 2.468831 GAAAGTGCGCAAAATGTGGAA 58.531 42.857 14.00 0.00 27.92 3.53
200 201 2.818130 AAGTGCGCAAAATGTGGAAT 57.182 40.000 14.00 0.00 27.92 3.01
201 202 2.818130 AGTGCGCAAAATGTGGAATT 57.182 40.000 14.00 0.00 27.92 2.17
202 203 3.110447 AGTGCGCAAAATGTGGAATTT 57.890 38.095 14.00 0.00 27.92 1.82
203 204 3.465871 AGTGCGCAAAATGTGGAATTTT 58.534 36.364 14.00 0.00 27.92 1.82
204 205 3.248125 AGTGCGCAAAATGTGGAATTTTG 59.752 39.130 14.00 15.76 46.25 2.44
205 206 3.002144 GTGCGCAAAATGTGGAATTTTGT 59.998 39.130 14.00 0.00 45.63 2.83
207 208 4.131202 CGCAAAATGTGGAATTTTGTGG 57.869 40.909 21.11 12.46 46.92 4.17
208 209 3.559242 CGCAAAATGTGGAATTTTGTGGT 59.441 39.130 21.11 0.00 46.92 4.16
209 210 4.034975 CGCAAAATGTGGAATTTTGTGGTT 59.965 37.500 21.11 0.00 46.92 3.67
210 211 5.509771 GCAAAATGTGGAATTTTGTGGTTC 58.490 37.500 19.28 4.68 45.63 3.62
211 212 5.065731 GCAAAATGTGGAATTTTGTGGTTCA 59.934 36.000 19.28 0.00 45.63 3.18
212 213 6.717413 CAAAATGTGGAATTTTGTGGTTCAG 58.283 36.000 13.03 0.00 41.52 3.02
213 214 5.612725 AATGTGGAATTTTGTGGTTCAGT 57.387 34.783 0.00 0.00 0.00 3.41
214 215 5.612725 ATGTGGAATTTTGTGGTTCAGTT 57.387 34.783 0.00 0.00 0.00 3.16
215 216 5.413309 TGTGGAATTTTGTGGTTCAGTTT 57.587 34.783 0.00 0.00 0.00 2.66
216 217 5.799213 TGTGGAATTTTGTGGTTCAGTTTT 58.201 33.333 0.00 0.00 0.00 2.43
217 218 5.872070 TGTGGAATTTTGTGGTTCAGTTTTC 59.128 36.000 0.00 0.00 0.00 2.29
218 219 6.106003 GTGGAATTTTGTGGTTCAGTTTTCT 58.894 36.000 0.00 0.00 0.00 2.52
233 234 5.819825 AGTTTTCTGAAGACCACTTTGTC 57.180 39.130 7.38 0.00 36.39 3.18
234 235 5.253330 AGTTTTCTGAAGACCACTTTGTCA 58.747 37.500 7.38 0.00 37.73 3.58
235 236 5.888161 AGTTTTCTGAAGACCACTTTGTCAT 59.112 36.000 7.38 0.00 37.73 3.06
236 237 6.378280 AGTTTTCTGAAGACCACTTTGTCATT 59.622 34.615 7.38 0.00 37.73 2.57
237 238 5.756195 TTCTGAAGACCACTTTGTCATTG 57.244 39.130 0.00 0.00 37.73 2.82
238 239 5.034852 TCTGAAGACCACTTTGTCATTGA 57.965 39.130 0.00 0.00 37.73 2.57
239 240 5.059161 TCTGAAGACCACTTTGTCATTGAG 58.941 41.667 0.00 0.00 37.73 3.02
240 241 5.034852 TGAAGACCACTTTGTCATTGAGA 57.965 39.130 0.00 0.00 37.73 3.27
241 242 5.059161 TGAAGACCACTTTGTCATTGAGAG 58.941 41.667 0.00 0.00 37.73 3.20
242 243 3.406764 AGACCACTTTGTCATTGAGAGC 58.593 45.455 0.00 0.00 37.73 4.09
243 244 2.146342 ACCACTTTGTCATTGAGAGCG 58.854 47.619 0.00 0.00 0.00 5.03
244 245 2.224281 ACCACTTTGTCATTGAGAGCGA 60.224 45.455 0.00 0.00 0.00 4.93
245 246 3.005554 CCACTTTGTCATTGAGAGCGAT 58.994 45.455 0.00 0.00 0.00 4.58
246 247 3.438087 CCACTTTGTCATTGAGAGCGATT 59.562 43.478 0.00 0.00 0.00 3.34
247 248 4.436584 CCACTTTGTCATTGAGAGCGATTC 60.437 45.833 0.00 0.00 0.00 2.52
248 249 3.369147 ACTTTGTCATTGAGAGCGATTCG 59.631 43.478 0.62 0.62 0.00 3.34
249 250 1.926561 TGTCATTGAGAGCGATTCGG 58.073 50.000 8.34 0.00 0.00 4.30
250 251 0.579156 GTCATTGAGAGCGATTCGGC 59.421 55.000 8.34 0.36 0.00 5.54
251 252 0.871592 TCATTGAGAGCGATTCGGCG 60.872 55.000 8.34 0.00 38.18 6.46
252 253 0.871592 CATTGAGAGCGATTCGGCGA 60.872 55.000 4.99 4.99 38.18 5.54
253 254 0.872021 ATTGAGAGCGATTCGGCGAC 60.872 55.000 10.16 0.00 38.18 5.19
254 255 1.934220 TTGAGAGCGATTCGGCGACT 61.934 55.000 10.16 3.40 38.18 4.18
255 256 1.941734 GAGAGCGATTCGGCGACTG 60.942 63.158 10.16 3.07 38.18 3.51
256 257 2.202623 GAGCGATTCGGCGACTGT 60.203 61.111 10.16 0.00 38.18 3.55
257 258 1.063649 GAGCGATTCGGCGACTGTA 59.936 57.895 10.16 0.00 38.18 2.74
258 259 0.524816 GAGCGATTCGGCGACTGTAA 60.525 55.000 10.16 0.00 38.18 2.41
259 260 0.102481 AGCGATTCGGCGACTGTAAT 59.898 50.000 10.16 0.00 38.18 1.89
260 261 0.503117 GCGATTCGGCGACTGTAATC 59.497 55.000 10.16 8.89 0.00 1.75
261 262 1.835121 CGATTCGGCGACTGTAATCA 58.165 50.000 10.16 0.00 0.00 2.57
262 263 2.394708 CGATTCGGCGACTGTAATCAT 58.605 47.619 10.16 0.00 0.00 2.45
263 264 2.153817 CGATTCGGCGACTGTAATCATG 59.846 50.000 10.16 0.00 0.00 3.07
264 265 2.951457 TTCGGCGACTGTAATCATGA 57.049 45.000 10.16 0.00 0.00 3.07
265 266 2.951457 TCGGCGACTGTAATCATGAA 57.049 45.000 4.99 0.00 0.00 2.57
266 267 2.536365 TCGGCGACTGTAATCATGAAC 58.464 47.619 4.99 0.00 0.00 3.18
267 268 2.094442 TCGGCGACTGTAATCATGAACA 60.094 45.455 4.99 0.00 0.00 3.18
268 269 2.866156 CGGCGACTGTAATCATGAACAT 59.134 45.455 0.00 0.00 0.00 2.71
269 270 3.309682 CGGCGACTGTAATCATGAACATT 59.690 43.478 0.00 0.00 0.00 2.71
270 271 4.201812 CGGCGACTGTAATCATGAACATTT 60.202 41.667 0.00 0.00 0.00 2.32
271 272 5.030295 GGCGACTGTAATCATGAACATTTG 58.970 41.667 0.00 0.19 0.00 2.32
272 273 5.030295 GCGACTGTAATCATGAACATTTGG 58.970 41.667 0.00 0.00 0.00 3.28
273 274 5.391950 GCGACTGTAATCATGAACATTTGGT 60.392 40.000 0.00 0.00 0.00 3.67
274 275 6.250819 CGACTGTAATCATGAACATTTGGTC 58.749 40.000 0.00 3.84 0.00 4.02
275 276 6.515272 ACTGTAATCATGAACATTTGGTCC 57.485 37.500 0.00 0.00 0.00 4.46
276 277 5.123820 ACTGTAATCATGAACATTTGGTCCG 59.876 40.000 0.00 0.00 0.00 4.79
277 278 5.007034 TGTAATCATGAACATTTGGTCCGT 58.993 37.500 0.00 0.00 0.00 4.69
278 279 4.439305 AATCATGAACATTTGGTCCGTG 57.561 40.909 0.00 0.00 0.00 4.94
279 280 1.539388 TCATGAACATTTGGTCCGTGC 59.461 47.619 0.00 0.00 0.00 5.34
280 281 1.541147 CATGAACATTTGGTCCGTGCT 59.459 47.619 0.00 0.00 0.00 4.40
281 282 2.552599 TGAACATTTGGTCCGTGCTA 57.447 45.000 0.00 0.00 0.00 3.49
282 283 2.147958 TGAACATTTGGTCCGTGCTAC 58.852 47.619 0.00 0.00 0.00 3.58
283 284 2.147958 GAACATTTGGTCCGTGCTACA 58.852 47.619 0.00 0.00 0.00 2.74
284 285 2.264005 ACATTTGGTCCGTGCTACAA 57.736 45.000 0.00 0.00 0.00 2.41
285 286 2.151202 ACATTTGGTCCGTGCTACAAG 58.849 47.619 0.00 0.00 0.00 3.16
286 287 2.224426 ACATTTGGTCCGTGCTACAAGA 60.224 45.455 0.00 0.00 0.00 3.02
287 288 2.623878 TTTGGTCCGTGCTACAAGAA 57.376 45.000 0.00 0.00 0.00 2.52
288 289 2.623878 TTGGTCCGTGCTACAAGAAA 57.376 45.000 0.00 0.00 0.00 2.52
289 290 2.623878 TGGTCCGTGCTACAAGAAAA 57.376 45.000 0.00 0.00 0.00 2.29
290 291 2.920524 TGGTCCGTGCTACAAGAAAAA 58.079 42.857 0.00 0.00 0.00 1.94
331 332 9.439500 ACAAAATCTGATTTATGAAAACATGGG 57.561 29.630 15.45 0.00 0.00 4.00
332 333 9.439500 CAAAATCTGATTTATGAAAACATGGGT 57.561 29.630 15.45 0.00 0.00 4.51
333 334 9.657419 AAAATCTGATTTATGAAAACATGGGTC 57.343 29.630 15.45 0.00 0.00 4.46
334 335 6.435430 TCTGATTTATGAAAACATGGGTCG 57.565 37.500 0.00 0.00 0.00 4.79
335 336 5.943416 TCTGATTTATGAAAACATGGGTCGT 59.057 36.000 0.00 0.00 0.00 4.34
336 337 5.948588 TGATTTATGAAAACATGGGTCGTG 58.051 37.500 0.00 0.00 0.00 4.35
337 338 3.840890 TTATGAAAACATGGGTCGTGC 57.159 42.857 0.00 0.00 0.00 5.34
338 339 1.614996 ATGAAAACATGGGTCGTGCA 58.385 45.000 0.00 0.00 0.00 4.57
339 340 1.393603 TGAAAACATGGGTCGTGCAA 58.606 45.000 0.00 0.00 0.00 4.08
340 341 1.959985 TGAAAACATGGGTCGTGCAAT 59.040 42.857 0.00 0.00 0.00 3.56
341 342 2.363680 TGAAAACATGGGTCGTGCAATT 59.636 40.909 0.00 0.00 0.00 2.32
342 343 3.181471 TGAAAACATGGGTCGTGCAATTT 60.181 39.130 0.00 0.00 0.00 1.82
343 344 4.038042 TGAAAACATGGGTCGTGCAATTTA 59.962 37.500 0.00 0.00 0.00 1.40
344 345 4.799564 AAACATGGGTCGTGCAATTTAT 57.200 36.364 0.00 0.00 0.00 1.40
345 346 4.799564 AACATGGGTCGTGCAATTTATT 57.200 36.364 0.00 0.00 0.00 1.40
346 347 4.799564 ACATGGGTCGTGCAATTTATTT 57.200 36.364 0.00 0.00 0.00 1.40
347 348 5.906113 ACATGGGTCGTGCAATTTATTTA 57.094 34.783 0.00 0.00 0.00 1.40
348 349 6.463995 ACATGGGTCGTGCAATTTATTTAT 57.536 33.333 0.00 0.00 0.00 1.40
349 350 6.872920 ACATGGGTCGTGCAATTTATTTATT 58.127 32.000 0.00 0.00 0.00 1.40
350 351 7.327214 ACATGGGTCGTGCAATTTATTTATTT 58.673 30.769 0.00 0.00 0.00 1.40
351 352 7.821846 ACATGGGTCGTGCAATTTATTTATTTT 59.178 29.630 0.00 0.00 0.00 1.82
352 353 8.663911 CATGGGTCGTGCAATTTATTTATTTTT 58.336 29.630 0.00 0.00 0.00 1.94
370 371 2.702898 TTTGTGTGGACAATGCATCG 57.297 45.000 0.00 0.00 41.77 3.84
371 372 1.603456 TTGTGTGGACAATGCATCGT 58.397 45.000 0.00 0.00 37.15 3.73
372 373 0.873721 TGTGTGGACAATGCATCGTG 59.126 50.000 0.00 0.00 0.00 4.35
373 374 1.155889 GTGTGGACAATGCATCGTGA 58.844 50.000 0.00 0.00 0.00 4.35
374 375 1.739466 GTGTGGACAATGCATCGTGAT 59.261 47.619 0.00 0.00 0.00 3.06
375 376 2.935849 GTGTGGACAATGCATCGTGATA 59.064 45.455 0.00 0.00 0.00 2.15
376 377 3.561310 GTGTGGACAATGCATCGTGATAT 59.439 43.478 0.00 0.00 0.00 1.63
377 378 4.749598 GTGTGGACAATGCATCGTGATATA 59.250 41.667 0.00 0.00 0.00 0.86
378 379 5.409520 GTGTGGACAATGCATCGTGATATAT 59.590 40.000 0.00 0.00 0.00 0.86
379 380 6.589907 GTGTGGACAATGCATCGTGATATATA 59.410 38.462 0.00 0.00 0.00 0.86
380 381 7.117667 GTGTGGACAATGCATCGTGATATATAA 59.882 37.037 0.00 0.00 0.00 0.98
381 382 7.823799 TGTGGACAATGCATCGTGATATATAAT 59.176 33.333 0.00 0.00 0.00 1.28
382 383 9.313118 GTGGACAATGCATCGTGATATATAATA 57.687 33.333 0.00 0.00 0.00 0.98
408 409 7.932120 AGCACATGAAGTTTCGTATCTATAC 57.068 36.000 0.00 0.00 0.00 1.47
409 410 7.717568 AGCACATGAAGTTTCGTATCTATACT 58.282 34.615 0.00 0.00 0.00 2.12
410 411 7.863375 AGCACATGAAGTTTCGTATCTATACTC 59.137 37.037 0.00 0.00 0.00 2.59
411 412 7.863375 GCACATGAAGTTTCGTATCTATACTCT 59.137 37.037 0.00 0.00 0.00 3.24
412 413 9.737427 CACATGAAGTTTCGTATCTATACTCTT 57.263 33.333 0.00 0.00 0.00 2.85
446 447 6.490566 AAAAACGCATATCTAGTTCGGTTT 57.509 33.333 0.00 0.00 41.09 3.27
447 448 5.464965 AAACGCATATCTAGTTCGGTTTG 57.535 39.130 0.00 0.00 0.00 2.93
448 449 2.864343 ACGCATATCTAGTTCGGTTTGC 59.136 45.455 0.00 0.00 0.00 3.68
449 450 2.863740 CGCATATCTAGTTCGGTTTGCA 59.136 45.455 0.00 0.00 0.00 4.08
450 451 3.494626 CGCATATCTAGTTCGGTTTGCAT 59.505 43.478 0.00 0.00 0.00 3.96
451 452 4.024893 CGCATATCTAGTTCGGTTTGCATT 60.025 41.667 0.00 0.00 0.00 3.56
452 453 5.504010 CGCATATCTAGTTCGGTTTGCATTT 60.504 40.000 0.00 0.00 0.00 2.32
453 454 5.682862 GCATATCTAGTTCGGTTTGCATTTG 59.317 40.000 0.00 0.00 0.00 2.32
454 455 3.552604 TCTAGTTCGGTTTGCATTTGC 57.447 42.857 0.00 0.00 42.50 3.68
503 513 4.813027 ACATGAATCTTTGGTGCATGAAC 58.187 39.130 0.00 0.00 38.82 3.18
547 561 6.286240 AGCATTATATGGCAGACTCGATTA 57.714 37.500 0.00 0.00 0.00 1.75
637 651 5.352643 ACGTGCCTTGTAATTTACTTCAC 57.647 39.130 7.99 8.69 0.00 3.18
663 677 1.597027 GGCACACAGTACTGCCGTT 60.597 57.895 22.90 0.00 43.56 4.44
667 683 1.937223 CACACAGTACTGCCGTTCAAA 59.063 47.619 22.90 0.00 0.00 2.69
762 1564 6.152661 AGTCAGAAAACTGAACCACATTTTGA 59.847 34.615 0.00 0.00 32.96 2.69
763 1565 6.473455 GTCAGAAAACTGAACCACATTTTGAG 59.527 38.462 0.00 0.00 32.96 3.02
764 1566 5.232838 CAGAAAACTGAACCACATTTTGAGC 59.767 40.000 0.00 0.00 32.96 4.26
765 1567 3.733443 AACTGAACCACATTTTGAGCC 57.267 42.857 0.00 0.00 0.00 4.70
767 1569 1.962807 CTGAACCACATTTTGAGCCCA 59.037 47.619 0.00 0.00 0.00 5.36
770 1572 3.390639 TGAACCACATTTTGAGCCCAATT 59.609 39.130 0.00 0.00 31.46 2.32
821 1697 8.029642 TCTCGAATGAAACTTTATTCCAACTC 57.970 34.615 2.42 0.00 0.00 3.01
979 2636 5.048713 GCCATGTCCATTATAAAGGTAGCAC 60.049 44.000 6.63 0.00 0.00 4.40
980 2637 5.473504 CCATGTCCATTATAAAGGTAGCACC 59.526 44.000 6.63 0.00 38.99 5.01
1171 2834 4.256110 CAACTTGCATGACTATCTCACCA 58.744 43.478 6.60 0.00 0.00 4.17
1480 3143 2.203584 ACATCCTTCTCCCATTGCTCT 58.796 47.619 0.00 0.00 0.00 4.09
1496 3159 0.678395 CTCTCCTACATGGCGAGCAT 59.322 55.000 0.00 0.00 40.34 3.79
1724 3388 1.448717 GCCCCGACAGAAAGCTCTC 60.449 63.158 0.00 0.00 0.00 3.20
1762 3451 1.645710 ACGAAGGTTCCTCATGGAGT 58.354 50.000 0.00 0.00 44.24 3.85
1805 3494 4.221262 GGAGATGATGGAGAGGAAGATCAG 59.779 50.000 0.00 0.00 0.00 2.90
1827 3516 4.951715 AGCACATGTCATGTTGGTAATGAT 59.048 37.500 15.98 0.00 42.70 2.45
1887 3685 5.163550 CCCAGACTACGTTGATGATGACTTA 60.164 44.000 3.44 0.00 0.00 2.24
1977 3775 1.344065 TCTACAACCTCGCCCAGAAA 58.656 50.000 0.00 0.00 0.00 2.52
2087 3885 1.469767 GCCGCATGAAACCAAATCTCC 60.470 52.381 0.00 0.00 0.00 3.71
2270 4068 2.014128 CGTGTGGGGTAATGATTGTCC 58.986 52.381 0.00 0.00 0.00 4.02
2282 4080 5.623956 AATGATTGTCCCGACTATAACCA 57.376 39.130 0.00 0.00 0.00 3.67
2283 4081 5.825593 ATGATTGTCCCGACTATAACCAT 57.174 39.130 0.00 0.00 0.00 3.55
2437 4235 5.048083 GCCTCAATGTTGTGGAACTTTGATA 60.048 40.000 15.84 0.00 46.75 2.15
2598 4403 5.247337 ACCCGAACAATTTTATGTTTCCCAT 59.753 36.000 0.00 0.00 43.31 4.00
2608 4418 5.850557 TTATGTTTCCCATAGCCACATTG 57.149 39.130 0.00 0.00 37.34 2.82
2711 4530 3.740044 CGTGTATGAAACATGGTCCAC 57.260 47.619 0.00 0.00 41.10 4.02
2887 4742 6.038161 AGCGTGTTTATAATTAGCAAGCATGA 59.962 34.615 16.34 0.00 37.10 3.07
2902 4757 2.090494 AGCATGACCCCTACTAGACCAT 60.090 50.000 0.00 0.00 0.00 3.55
2925 4780 1.633945 CCCCTAGTAGCACAACCCTTT 59.366 52.381 0.00 0.00 0.00 3.11
3000 4860 1.174712 AGTGGTGGACATGCAACTGC 61.175 55.000 0.00 0.00 42.50 4.40
3060 4920 1.097547 ATGTCTAGTTGCATGCGGGC 61.098 55.000 14.09 5.52 0.00 6.13
3071 4931 2.938086 ATGCGGGCTGTGACACGTA 61.938 57.895 0.22 0.00 0.00 3.57
3104 4964 2.242708 TGGGGGCGGACATTTAACTAAT 59.757 45.455 0.00 0.00 0.00 1.73
3106 4966 3.067601 GGGGGCGGACATTTAACTAATTG 59.932 47.826 0.00 0.00 0.00 2.32
3150 5468 9.537192 GTTGTTATAGCTTAGGGTTTTGTTTTT 57.463 29.630 0.00 0.00 0.00 1.94
3157 5475 3.744238 AGGGTTTTGTTTTTGCGCTAT 57.256 38.095 9.73 0.00 0.00 2.97
3169 5487 6.426328 TGTTTTTGCGCTATGGAAATGAAAAT 59.574 30.769 9.73 0.00 37.76 1.82
3277 5600 8.894409 AAACACATGTATGATTCATTAACACG 57.106 30.769 4.14 0.00 0.00 4.49
3284 5607 8.587952 TGTATGATTCATTAACACGATGTAGG 57.412 34.615 4.14 0.00 0.00 3.18
3285 5608 8.417884 TGTATGATTCATTAACACGATGTAGGA 58.582 33.333 4.14 0.00 0.00 2.94
3301 5624 6.313905 CGATGTAGGAGTGCTTACAGAAAAAT 59.686 38.462 0.00 0.00 39.53 1.82
3312 5635 7.062255 GTGCTTACAGAAAAATAGAAATGGCAC 59.938 37.037 0.00 0.00 36.56 5.01
3354 5677 3.908643 AAGCGGTTAAAACCCCAAAAA 57.091 38.095 0.00 0.00 46.53 1.94
3377 5700 0.038166 CACATGGCCCACCTACAACT 59.962 55.000 0.00 0.00 36.63 3.16
3453 8843 0.941542 TAGCGCATAATCCGTTTGGC 59.058 50.000 11.47 0.00 34.14 4.52
3468 8858 2.038814 TTGGCGAGTGCAAGGTGAGA 62.039 55.000 0.00 0.00 45.35 3.27
3472 8862 0.315251 CGAGTGCAAGGTGAGAGTCA 59.685 55.000 0.00 0.00 0.00 3.41
3480 8870 0.749649 AGGTGAGAGTCATGCGGATC 59.250 55.000 0.00 0.00 0.00 3.36
3492 8882 1.521457 GCGGATCGTGCATCTCCAA 60.521 57.895 11.33 0.00 0.00 3.53
3498 8888 2.789917 GTGCATCTCCAAGCAGCG 59.210 61.111 0.00 0.00 42.14 5.18
3505 8895 0.536724 TCTCCAAGCAGCGCTATTGA 59.463 50.000 27.32 16.20 38.25 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 7.706179 GCAGCAACAAAGGAATATAGCAAATTA 59.294 33.333 0.00 0.00 0.00 1.40
2 3 6.536224 GCAGCAACAAAGGAATATAGCAAATT 59.464 34.615 0.00 0.00 0.00 1.82
3 4 6.044682 GCAGCAACAAAGGAATATAGCAAAT 58.955 36.000 0.00 0.00 0.00 2.32
4 5 5.185635 AGCAGCAACAAAGGAATATAGCAAA 59.814 36.000 0.00 0.00 0.00 3.68
5 6 4.706476 AGCAGCAACAAAGGAATATAGCAA 59.294 37.500 0.00 0.00 0.00 3.91
6 7 4.272489 AGCAGCAACAAAGGAATATAGCA 58.728 39.130 0.00 0.00 0.00 3.49
7 8 4.907879 AGCAGCAACAAAGGAATATAGC 57.092 40.909 0.00 0.00 0.00 2.97
8 9 6.753744 GGAAAAGCAGCAACAAAGGAATATAG 59.246 38.462 0.00 0.00 0.00 1.31
9 10 6.437162 AGGAAAAGCAGCAACAAAGGAATATA 59.563 34.615 0.00 0.00 0.00 0.86
10 11 5.246883 AGGAAAAGCAGCAACAAAGGAATAT 59.753 36.000 0.00 0.00 0.00 1.28
11 12 4.588528 AGGAAAAGCAGCAACAAAGGAATA 59.411 37.500 0.00 0.00 0.00 1.75
12 13 3.389002 AGGAAAAGCAGCAACAAAGGAAT 59.611 39.130 0.00 0.00 0.00 3.01
13 14 2.765699 AGGAAAAGCAGCAACAAAGGAA 59.234 40.909 0.00 0.00 0.00 3.36
14 15 2.101249 CAGGAAAAGCAGCAACAAAGGA 59.899 45.455 0.00 0.00 0.00 3.36
15 16 2.476821 CAGGAAAAGCAGCAACAAAGG 58.523 47.619 0.00 0.00 0.00 3.11
16 17 2.476821 CCAGGAAAAGCAGCAACAAAG 58.523 47.619 0.00 0.00 0.00 2.77
17 18 1.473080 GCCAGGAAAAGCAGCAACAAA 60.473 47.619 0.00 0.00 0.00 2.83
18 19 0.104671 GCCAGGAAAAGCAGCAACAA 59.895 50.000 0.00 0.00 0.00 2.83
19 20 1.042003 TGCCAGGAAAAGCAGCAACA 61.042 50.000 0.00 0.00 33.08 3.33
20 21 1.741525 TGCCAGGAAAAGCAGCAAC 59.258 52.632 0.00 0.00 33.08 4.17
21 22 4.274012 TGCCAGGAAAAGCAGCAA 57.726 50.000 0.00 0.00 33.08 3.91
25 26 2.819608 GTTACATCTGCCAGGAAAAGCA 59.180 45.455 0.00 0.00 37.46 3.91
26 27 2.819608 TGTTACATCTGCCAGGAAAAGC 59.180 45.455 0.00 0.00 0.00 3.51
27 28 4.142315 CCATGTTACATCTGCCAGGAAAAG 60.142 45.833 0.00 0.00 0.00 2.27
28 29 3.763360 CCATGTTACATCTGCCAGGAAAA 59.237 43.478 0.00 0.00 0.00 2.29
29 30 3.010027 TCCATGTTACATCTGCCAGGAAA 59.990 43.478 0.00 0.00 0.00 3.13
30 31 2.575735 TCCATGTTACATCTGCCAGGAA 59.424 45.455 0.00 0.00 0.00 3.36
31 32 2.195727 TCCATGTTACATCTGCCAGGA 58.804 47.619 0.00 0.00 0.00 3.86
32 33 2.684881 GTTCCATGTTACATCTGCCAGG 59.315 50.000 0.00 0.00 0.00 4.45
33 34 2.352651 CGTTCCATGTTACATCTGCCAG 59.647 50.000 0.00 0.00 0.00 4.85
34 35 2.355197 CGTTCCATGTTACATCTGCCA 58.645 47.619 0.00 0.00 0.00 4.92
35 36 1.670811 CCGTTCCATGTTACATCTGCC 59.329 52.381 0.00 0.00 0.00 4.85
36 37 2.095853 CACCGTTCCATGTTACATCTGC 59.904 50.000 0.00 0.00 0.00 4.26
37 38 2.677836 CCACCGTTCCATGTTACATCTG 59.322 50.000 0.00 0.00 0.00 2.90
38 39 2.355716 CCCACCGTTCCATGTTACATCT 60.356 50.000 0.00 0.00 0.00 2.90
39 40 2.014128 CCCACCGTTCCATGTTACATC 58.986 52.381 0.00 0.00 0.00 3.06
40 41 1.353022 ACCCACCGTTCCATGTTACAT 59.647 47.619 0.00 0.00 0.00 2.29
41 42 0.766131 ACCCACCGTTCCATGTTACA 59.234 50.000 0.00 0.00 0.00 2.41
42 43 2.766345 TACCCACCGTTCCATGTTAC 57.234 50.000 0.00 0.00 0.00 2.50
43 44 2.171027 GGATACCCACCGTTCCATGTTA 59.829 50.000 0.00 0.00 0.00 2.41
44 45 1.064979 GGATACCCACCGTTCCATGTT 60.065 52.381 0.00 0.00 0.00 2.71
45 46 0.544697 GGATACCCACCGTTCCATGT 59.455 55.000 0.00 0.00 0.00 3.21
46 47 0.531974 CGGATACCCACCGTTCCATG 60.532 60.000 0.00 0.00 44.57 3.66
47 48 1.827394 CGGATACCCACCGTTCCAT 59.173 57.895 0.00 0.00 44.57 3.41
48 49 3.301070 CGGATACCCACCGTTCCA 58.699 61.111 0.00 0.00 44.57 3.53
54 55 1.528309 CCAATGGCGGATACCCACC 60.528 63.158 0.00 0.00 39.33 4.61
55 56 2.193536 GCCAATGGCGGATACCCAC 61.194 63.158 9.14 0.00 39.62 4.61
56 57 2.194597 GCCAATGGCGGATACCCA 59.805 61.111 9.14 0.00 39.62 4.51
66 67 3.919216 TGACCGTTTATTTTGCCAATGG 58.081 40.909 0.00 0.00 33.40 3.16
67 68 4.804108 TCTGACCGTTTATTTTGCCAATG 58.196 39.130 0.00 0.00 0.00 2.82
68 69 5.659440 ATCTGACCGTTTATTTTGCCAAT 57.341 34.783 0.00 0.00 0.00 3.16
69 70 5.242838 AGAATCTGACCGTTTATTTTGCCAA 59.757 36.000 0.00 0.00 0.00 4.52
70 71 4.764823 AGAATCTGACCGTTTATTTTGCCA 59.235 37.500 0.00 0.00 0.00 4.92
71 72 5.310720 AGAATCTGACCGTTTATTTTGCC 57.689 39.130 0.00 0.00 0.00 4.52
72 73 6.612306 AGAAGAATCTGACCGTTTATTTTGC 58.388 36.000 0.00 0.00 33.59 3.68
73 74 8.507249 AGAAGAAGAATCTGACCGTTTATTTTG 58.493 33.333 0.00 0.00 35.59 2.44
74 75 8.622948 AGAAGAAGAATCTGACCGTTTATTTT 57.377 30.769 0.00 0.00 35.59 1.82
75 76 7.878127 TGAGAAGAAGAATCTGACCGTTTATTT 59.122 33.333 0.00 0.00 35.59 1.40
76 77 7.386851 TGAGAAGAAGAATCTGACCGTTTATT 58.613 34.615 0.00 0.00 35.59 1.40
77 78 6.936279 TGAGAAGAAGAATCTGACCGTTTAT 58.064 36.000 0.00 0.00 35.59 1.40
78 79 6.340962 TGAGAAGAAGAATCTGACCGTTTA 57.659 37.500 0.00 0.00 35.59 2.01
79 80 5.215252 TGAGAAGAAGAATCTGACCGTTT 57.785 39.130 0.00 0.00 35.59 3.60
80 81 4.815269 CTGAGAAGAAGAATCTGACCGTT 58.185 43.478 0.00 0.00 35.59 4.44
81 82 3.367910 GCTGAGAAGAAGAATCTGACCGT 60.368 47.826 0.00 0.00 35.59 4.83
82 83 3.186119 GCTGAGAAGAAGAATCTGACCG 58.814 50.000 0.00 0.00 35.59 4.79
83 84 4.199432 TGCTGAGAAGAAGAATCTGACC 57.801 45.455 0.00 0.00 35.59 4.02
84 85 6.740411 ATTTGCTGAGAAGAAGAATCTGAC 57.260 37.500 0.00 0.00 35.59 3.51
85 86 8.853077 TTTATTTGCTGAGAAGAAGAATCTGA 57.147 30.769 0.00 0.00 35.59 3.27
86 87 9.504710 CATTTATTTGCTGAGAAGAAGAATCTG 57.495 33.333 0.00 0.00 35.59 2.90
87 88 8.684520 CCATTTATTTGCTGAGAAGAAGAATCT 58.315 33.333 0.00 0.00 37.57 2.40
88 89 8.465201 ACCATTTATTTGCTGAGAAGAAGAATC 58.535 33.333 0.00 0.00 0.00 2.52
89 90 8.358582 ACCATTTATTTGCTGAGAAGAAGAAT 57.641 30.769 0.00 0.00 0.00 2.40
90 91 7.361201 CGACCATTTATTTGCTGAGAAGAAGAA 60.361 37.037 0.00 0.00 0.00 2.52
91 92 6.092670 CGACCATTTATTTGCTGAGAAGAAGA 59.907 38.462 0.00 0.00 0.00 2.87
92 93 6.253746 CGACCATTTATTTGCTGAGAAGAAG 58.746 40.000 0.00 0.00 0.00 2.85
93 94 5.123820 CCGACCATTTATTTGCTGAGAAGAA 59.876 40.000 0.00 0.00 0.00 2.52
94 95 4.635765 CCGACCATTTATTTGCTGAGAAGA 59.364 41.667 0.00 0.00 0.00 2.87
95 96 4.635765 TCCGACCATTTATTTGCTGAGAAG 59.364 41.667 0.00 0.00 0.00 2.85
96 97 4.584874 TCCGACCATTTATTTGCTGAGAA 58.415 39.130 0.00 0.00 0.00 2.87
97 98 4.191544 CTCCGACCATTTATTTGCTGAGA 58.808 43.478 0.00 0.00 0.00 3.27
98 99 3.941483 ACTCCGACCATTTATTTGCTGAG 59.059 43.478 0.00 0.00 0.00 3.35
99 100 3.689161 CACTCCGACCATTTATTTGCTGA 59.311 43.478 0.00 0.00 0.00 4.26
100 101 3.181497 CCACTCCGACCATTTATTTGCTG 60.181 47.826 0.00 0.00 0.00 4.41
101 102 3.016736 CCACTCCGACCATTTATTTGCT 58.983 45.455 0.00 0.00 0.00 3.91
102 103 2.479560 GCCACTCCGACCATTTATTTGC 60.480 50.000 0.00 0.00 0.00 3.68
103 104 2.223249 CGCCACTCCGACCATTTATTTG 60.223 50.000 0.00 0.00 0.00 2.32
104 105 2.014128 CGCCACTCCGACCATTTATTT 58.986 47.619 0.00 0.00 0.00 1.40
105 106 1.208535 TCGCCACTCCGACCATTTATT 59.791 47.619 0.00 0.00 31.36 1.40
106 107 0.828022 TCGCCACTCCGACCATTTAT 59.172 50.000 0.00 0.00 31.36 1.40
107 108 0.174845 CTCGCCACTCCGACCATTTA 59.825 55.000 0.00 0.00 33.12 1.40
108 109 1.079127 CTCGCCACTCCGACCATTT 60.079 57.895 0.00 0.00 33.12 2.32
109 110 2.579201 CTCGCCACTCCGACCATT 59.421 61.111 0.00 0.00 33.12 3.16
110 111 4.148825 GCTCGCCACTCCGACCAT 62.149 66.667 0.00 0.00 33.12 3.55
116 117 4.057428 AGACGTGCTCGCCACTCC 62.057 66.667 8.29 0.00 42.42 3.85
117 118 2.807045 CAGACGTGCTCGCCACTC 60.807 66.667 8.29 0.00 42.42 3.51
118 119 4.363990 CCAGACGTGCTCGCCACT 62.364 66.667 8.29 2.89 42.42 4.00
119 120 4.664677 ACCAGACGTGCTCGCCAC 62.665 66.667 8.29 0.48 41.18 5.01
120 121 4.662961 CACCAGACGTGCTCGCCA 62.663 66.667 8.29 0.00 41.18 5.69
128 129 1.737838 CAATGCCATACACCAGACGT 58.262 50.000 0.00 0.00 0.00 4.34
129 130 0.378257 GCAATGCCATACACCAGACG 59.622 55.000 0.00 0.00 0.00 4.18
149 150 4.735132 TCTTCGGCGTGCCCTTCG 62.735 66.667 6.85 0.00 0.00 3.79
150 151 2.358247 TTCTTCGGCGTGCCCTTC 60.358 61.111 6.85 0.00 0.00 3.46
151 152 2.358737 CTTCTTCGGCGTGCCCTT 60.359 61.111 6.85 0.00 0.00 3.95
154 155 3.491652 GAGCTTCTTCGGCGTGCC 61.492 66.667 6.85 0.00 34.52 5.01
155 156 2.433318 AGAGCTTCTTCGGCGTGC 60.433 61.111 6.85 5.19 34.52 5.34
156 157 2.734673 GCAGAGCTTCTTCGGCGTG 61.735 63.158 6.85 1.06 34.52 5.34
157 158 2.433318 GCAGAGCTTCTTCGGCGT 60.433 61.111 6.85 0.00 34.52 5.68
158 159 2.125753 AGCAGAGCTTCTTCGGCG 60.126 61.111 0.00 0.00 42.11 6.46
159 160 1.079543 TGAGCAGAGCTTCTTCGGC 60.080 57.895 0.00 0.00 39.88 5.54
160 161 0.459934 CCTGAGCAGAGCTTCTTCGG 60.460 60.000 0.00 0.00 39.88 4.30
161 162 0.529833 TCCTGAGCAGAGCTTCTTCG 59.470 55.000 0.00 0.00 39.88 3.79
162 163 2.758736 TTCCTGAGCAGAGCTTCTTC 57.241 50.000 0.00 0.00 39.88 2.87
163 164 2.371510 ACTTTCCTGAGCAGAGCTTCTT 59.628 45.455 0.00 0.00 39.88 2.52
164 165 1.977129 ACTTTCCTGAGCAGAGCTTCT 59.023 47.619 0.00 0.00 39.88 2.85
165 166 2.075338 CACTTTCCTGAGCAGAGCTTC 58.925 52.381 0.00 0.00 39.88 3.86
166 167 1.881498 GCACTTTCCTGAGCAGAGCTT 60.881 52.381 0.00 0.00 39.88 3.74
167 168 0.321475 GCACTTTCCTGAGCAGAGCT 60.321 55.000 0.00 0.00 43.88 4.09
168 169 1.633852 CGCACTTTCCTGAGCAGAGC 61.634 60.000 0.00 0.00 0.00 4.09
169 170 1.633852 GCGCACTTTCCTGAGCAGAG 61.634 60.000 0.30 0.00 36.98 3.35
170 171 1.669115 GCGCACTTTCCTGAGCAGA 60.669 57.895 0.30 0.00 36.98 4.26
171 172 1.509644 TTGCGCACTTTCCTGAGCAG 61.510 55.000 11.12 0.00 45.94 4.24
172 173 1.100463 TTTGCGCACTTTCCTGAGCA 61.100 50.000 11.12 0.00 44.10 4.26
173 174 0.030638 TTTTGCGCACTTTCCTGAGC 59.969 50.000 11.12 0.00 37.47 4.26
174 175 2.287788 ACATTTTGCGCACTTTCCTGAG 60.288 45.455 11.12 0.00 0.00 3.35
175 176 1.680735 ACATTTTGCGCACTTTCCTGA 59.319 42.857 11.12 0.00 0.00 3.86
176 177 1.788308 CACATTTTGCGCACTTTCCTG 59.212 47.619 11.12 4.76 0.00 3.86
177 178 1.269726 CCACATTTTGCGCACTTTCCT 60.270 47.619 11.12 0.00 0.00 3.36
178 179 1.139163 CCACATTTTGCGCACTTTCC 58.861 50.000 11.12 0.00 0.00 3.13
179 180 2.132740 TCCACATTTTGCGCACTTTC 57.867 45.000 11.12 0.00 0.00 2.62
180 181 2.593346 TTCCACATTTTGCGCACTTT 57.407 40.000 11.12 0.00 0.00 2.66
181 182 2.818130 ATTCCACATTTTGCGCACTT 57.182 40.000 11.12 0.00 0.00 3.16
182 183 2.818130 AATTCCACATTTTGCGCACT 57.182 40.000 11.12 0.00 0.00 4.40
183 184 3.002144 ACAAAATTCCACATTTTGCGCAC 59.998 39.130 11.12 0.00 46.97 5.34
184 185 3.002042 CACAAAATTCCACATTTTGCGCA 59.998 39.130 5.66 5.66 46.97 6.09
185 186 3.543670 CACAAAATTCCACATTTTGCGC 58.456 40.909 16.41 0.00 46.97 6.09
186 187 3.559242 ACCACAAAATTCCACATTTTGCG 59.441 39.130 16.41 9.51 46.97 4.85
187 188 5.065731 TGAACCACAAAATTCCACATTTTGC 59.934 36.000 16.41 4.59 46.97 3.68
189 190 6.413892 ACTGAACCACAAAATTCCACATTTT 58.586 32.000 0.00 0.00 0.00 1.82
190 191 5.988287 ACTGAACCACAAAATTCCACATTT 58.012 33.333 0.00 0.00 0.00 2.32
191 192 5.612725 ACTGAACCACAAAATTCCACATT 57.387 34.783 0.00 0.00 0.00 2.71
192 193 5.612725 AACTGAACCACAAAATTCCACAT 57.387 34.783 0.00 0.00 0.00 3.21
193 194 5.413309 AAACTGAACCACAAAATTCCACA 57.587 34.783 0.00 0.00 0.00 4.17
194 195 6.035975 CAGAAAACTGAACCACAAAATTCCAC 59.964 38.462 0.00 0.00 0.00 4.02
195 196 6.071108 TCAGAAAACTGAACCACAAAATTCCA 60.071 34.615 0.00 0.00 0.00 3.53
196 197 6.337356 TCAGAAAACTGAACCACAAAATTCC 58.663 36.000 0.00 0.00 0.00 3.01
197 198 7.759433 TCTTCAGAAAACTGAACCACAAAATTC 59.241 33.333 8.32 0.00 38.30 2.17
198 199 7.545615 GTCTTCAGAAAACTGAACCACAAAATT 59.454 33.333 8.32 0.00 38.30 1.82
199 200 7.035612 GTCTTCAGAAAACTGAACCACAAAAT 58.964 34.615 8.32 0.00 38.30 1.82
200 201 6.386654 GTCTTCAGAAAACTGAACCACAAAA 58.613 36.000 8.32 0.00 38.30 2.44
201 202 5.105917 GGTCTTCAGAAAACTGAACCACAAA 60.106 40.000 13.06 0.00 38.30 2.83
202 203 4.398044 GGTCTTCAGAAAACTGAACCACAA 59.602 41.667 13.06 0.00 38.30 3.33
203 204 3.945285 GGTCTTCAGAAAACTGAACCACA 59.055 43.478 13.06 0.00 38.30 4.17
204 205 3.945285 TGGTCTTCAGAAAACTGAACCAC 59.055 43.478 15.40 11.53 38.56 4.16
205 206 3.945285 GTGGTCTTCAGAAAACTGAACCA 59.055 43.478 15.40 15.40 40.14 3.67
206 207 4.200092 AGTGGTCTTCAGAAAACTGAACC 58.800 43.478 8.32 10.24 38.30 3.62
207 208 5.819825 AAGTGGTCTTCAGAAAACTGAAC 57.180 39.130 8.32 2.00 38.30 3.18
208 209 5.710099 ACAAAGTGGTCTTCAGAAAACTGAA 59.290 36.000 11.29 11.29 40.59 3.02
209 210 5.253330 ACAAAGTGGTCTTCAGAAAACTGA 58.747 37.500 0.00 0.00 32.90 3.41
210 211 5.123820 TGACAAAGTGGTCTTCAGAAAACTG 59.876 40.000 0.00 0.00 38.61 3.16
211 212 5.253330 TGACAAAGTGGTCTTCAGAAAACT 58.747 37.500 0.00 0.00 38.61 2.66
212 213 5.560966 TGACAAAGTGGTCTTCAGAAAAC 57.439 39.130 0.00 0.00 38.61 2.43
213 214 6.376864 TCAATGACAAAGTGGTCTTCAGAAAA 59.623 34.615 0.00 0.00 38.61 2.29
214 215 5.885352 TCAATGACAAAGTGGTCTTCAGAAA 59.115 36.000 0.00 0.00 38.61 2.52
215 216 5.436175 TCAATGACAAAGTGGTCTTCAGAA 58.564 37.500 0.00 0.00 38.61 3.02
216 217 5.034852 TCAATGACAAAGTGGTCTTCAGA 57.965 39.130 0.00 0.00 38.61 3.27
217 218 5.059161 TCTCAATGACAAAGTGGTCTTCAG 58.941 41.667 0.00 0.00 38.61 3.02
218 219 5.034852 TCTCAATGACAAAGTGGTCTTCA 57.965 39.130 0.00 0.00 38.61 3.02
219 220 4.083590 GCTCTCAATGACAAAGTGGTCTTC 60.084 45.833 0.00 0.00 38.61 2.87
220 221 3.817647 GCTCTCAATGACAAAGTGGTCTT 59.182 43.478 0.00 0.00 38.61 3.01
221 222 3.406764 GCTCTCAATGACAAAGTGGTCT 58.593 45.455 0.00 0.00 38.61 3.85
222 223 2.158449 CGCTCTCAATGACAAAGTGGTC 59.842 50.000 0.00 0.00 38.29 4.02
223 224 2.146342 CGCTCTCAATGACAAAGTGGT 58.854 47.619 0.00 0.00 0.00 4.16
224 225 2.416747 TCGCTCTCAATGACAAAGTGG 58.583 47.619 0.00 0.00 0.00 4.00
225 226 4.645956 GAATCGCTCTCAATGACAAAGTG 58.354 43.478 0.00 0.00 0.00 3.16
226 227 3.369147 CGAATCGCTCTCAATGACAAAGT 59.631 43.478 0.00 0.00 0.00 2.66
227 228 3.242220 CCGAATCGCTCTCAATGACAAAG 60.242 47.826 0.00 0.00 0.00 2.77
228 229 2.672874 CCGAATCGCTCTCAATGACAAA 59.327 45.455 0.00 0.00 0.00 2.83
229 230 2.270923 CCGAATCGCTCTCAATGACAA 58.729 47.619 0.00 0.00 0.00 3.18
230 231 1.926561 CCGAATCGCTCTCAATGACA 58.073 50.000 0.00 0.00 0.00 3.58
231 232 0.579156 GCCGAATCGCTCTCAATGAC 59.421 55.000 0.00 0.00 0.00 3.06
232 233 0.871592 CGCCGAATCGCTCTCAATGA 60.872 55.000 0.00 0.00 0.00 2.57
233 234 0.871592 TCGCCGAATCGCTCTCAATG 60.872 55.000 0.00 0.00 0.00 2.82
234 235 0.872021 GTCGCCGAATCGCTCTCAAT 60.872 55.000 0.00 0.00 0.00 2.57
235 236 1.516386 GTCGCCGAATCGCTCTCAA 60.516 57.895 0.00 0.00 0.00 3.02
236 237 2.102357 GTCGCCGAATCGCTCTCA 59.898 61.111 0.00 0.00 0.00 3.27
237 238 1.941734 CAGTCGCCGAATCGCTCTC 60.942 63.158 0.00 0.00 0.00 3.20
238 239 1.374343 TACAGTCGCCGAATCGCTCT 61.374 55.000 0.00 0.00 0.00 4.09
239 240 0.524816 TTACAGTCGCCGAATCGCTC 60.525 55.000 0.00 0.00 0.00 5.03
240 241 0.102481 ATTACAGTCGCCGAATCGCT 59.898 50.000 0.00 0.00 0.00 4.93
241 242 0.503117 GATTACAGTCGCCGAATCGC 59.497 55.000 0.00 0.00 0.00 4.58
242 243 1.835121 TGATTACAGTCGCCGAATCG 58.165 50.000 0.00 0.00 32.12 3.34
243 244 3.381045 TCATGATTACAGTCGCCGAATC 58.619 45.455 0.00 0.00 0.00 2.52
244 245 3.452755 TCATGATTACAGTCGCCGAAT 57.547 42.857 0.00 0.00 0.00 3.34
245 246 2.927477 GTTCATGATTACAGTCGCCGAA 59.073 45.455 0.00 0.00 0.00 4.30
246 247 2.094442 TGTTCATGATTACAGTCGCCGA 60.094 45.455 0.00 0.00 0.00 5.54
247 248 2.267426 TGTTCATGATTACAGTCGCCG 58.733 47.619 0.00 0.00 0.00 6.46
248 249 4.882671 AATGTTCATGATTACAGTCGCC 57.117 40.909 6.40 0.00 0.00 5.54
249 250 5.030295 CCAAATGTTCATGATTACAGTCGC 58.970 41.667 6.40 0.00 0.00 5.19
250 251 6.182039 ACCAAATGTTCATGATTACAGTCG 57.818 37.500 6.40 1.37 0.00 4.18
251 252 6.555315 GGACCAAATGTTCATGATTACAGTC 58.445 40.000 6.40 7.45 0.00 3.51
252 253 5.123820 CGGACCAAATGTTCATGATTACAGT 59.876 40.000 6.40 0.93 0.00 3.55
253 254 5.123820 ACGGACCAAATGTTCATGATTACAG 59.876 40.000 6.40 0.00 0.00 2.74
254 255 5.007034 ACGGACCAAATGTTCATGATTACA 58.993 37.500 2.79 2.79 0.00 2.41
255 256 5.331902 CACGGACCAAATGTTCATGATTAC 58.668 41.667 0.00 0.00 0.00 1.89
256 257 4.142491 GCACGGACCAAATGTTCATGATTA 60.142 41.667 0.00 0.00 0.00 1.75
257 258 3.367292 GCACGGACCAAATGTTCATGATT 60.367 43.478 0.00 0.00 0.00 2.57
258 259 2.164219 GCACGGACCAAATGTTCATGAT 59.836 45.455 0.00 0.00 0.00 2.45
259 260 1.539388 GCACGGACCAAATGTTCATGA 59.461 47.619 0.00 0.00 0.00 3.07
260 261 1.541147 AGCACGGACCAAATGTTCATG 59.459 47.619 0.00 0.00 0.00 3.07
261 262 1.909700 AGCACGGACCAAATGTTCAT 58.090 45.000 0.00 0.00 0.00 2.57
262 263 2.147958 GTAGCACGGACCAAATGTTCA 58.852 47.619 0.00 0.00 0.00 3.18
263 264 2.147958 TGTAGCACGGACCAAATGTTC 58.852 47.619 0.00 0.00 0.00 3.18
264 265 2.264005 TGTAGCACGGACCAAATGTT 57.736 45.000 0.00 0.00 0.00 2.71
265 266 2.151202 CTTGTAGCACGGACCAAATGT 58.849 47.619 0.00 0.00 0.00 2.71
266 267 2.422597 TCTTGTAGCACGGACCAAATG 58.577 47.619 0.00 0.00 0.00 2.32
267 268 2.851263 TCTTGTAGCACGGACCAAAT 57.149 45.000 0.00 0.00 0.00 2.32
268 269 2.623878 TTCTTGTAGCACGGACCAAA 57.376 45.000 0.00 0.00 0.00 3.28
269 270 2.623878 TTTCTTGTAGCACGGACCAA 57.376 45.000 0.00 0.00 0.00 3.67
270 271 2.623878 TTTTCTTGTAGCACGGACCA 57.376 45.000 0.00 0.00 0.00 4.02
305 306 9.439500 CCCATGTTTTCATAAATCAGATTTTGT 57.561 29.630 13.71 1.14 38.64 2.83
306 307 9.439500 ACCCATGTTTTCATAAATCAGATTTTG 57.561 29.630 13.71 11.36 38.64 2.44
307 308 9.657419 GACCCATGTTTTCATAAATCAGATTTT 57.343 29.630 13.71 0.00 38.64 1.82
308 309 7.975616 CGACCCATGTTTTCATAAATCAGATTT 59.024 33.333 13.06 13.06 38.64 2.17
309 310 7.122650 ACGACCCATGTTTTCATAAATCAGATT 59.877 33.333 0.00 0.00 38.64 2.40
310 311 6.603201 ACGACCCATGTTTTCATAAATCAGAT 59.397 34.615 0.00 0.00 38.64 2.90
311 312 5.943416 ACGACCCATGTTTTCATAAATCAGA 59.057 36.000 0.00 0.00 38.64 3.27
312 313 6.029607 CACGACCCATGTTTTCATAAATCAG 58.970 40.000 0.00 0.00 38.64 2.90
313 314 5.621104 GCACGACCCATGTTTTCATAAATCA 60.621 40.000 0.00 0.00 38.64 2.57
314 315 4.798387 GCACGACCCATGTTTTCATAAATC 59.202 41.667 0.00 0.00 38.64 2.17
315 316 4.219507 TGCACGACCCATGTTTTCATAAAT 59.780 37.500 0.00 0.00 38.64 1.40
316 317 3.570125 TGCACGACCCATGTTTTCATAAA 59.430 39.130 0.00 0.00 38.64 1.40
317 318 3.149981 TGCACGACCCATGTTTTCATAA 58.850 40.909 0.00 0.00 38.64 1.90
318 319 2.784347 TGCACGACCCATGTTTTCATA 58.216 42.857 0.00 0.00 38.64 2.15
319 320 1.614996 TGCACGACCCATGTTTTCAT 58.385 45.000 0.00 0.00 41.78 2.57
320 321 1.393603 TTGCACGACCCATGTTTTCA 58.606 45.000 0.00 0.00 0.00 2.69
321 322 2.723124 ATTGCACGACCCATGTTTTC 57.277 45.000 0.00 0.00 0.00 2.29
322 323 3.467374 AAATTGCACGACCCATGTTTT 57.533 38.095 0.00 0.00 0.00 2.43
323 324 4.799564 ATAAATTGCACGACCCATGTTT 57.200 36.364 0.00 0.00 0.00 2.83
324 325 4.799564 AATAAATTGCACGACCCATGTT 57.200 36.364 0.00 0.00 0.00 2.71
325 326 4.799564 AAATAAATTGCACGACCCATGT 57.200 36.364 0.00 0.00 0.00 3.21
326 327 7.769272 AAATAAATAAATTGCACGACCCATG 57.231 32.000 0.00 0.00 0.00 3.66
327 328 8.785329 AAAAATAAATAAATTGCACGACCCAT 57.215 26.923 0.00 0.00 0.00 4.00
349 350 3.181482 ACGATGCATTGTCCACACAAAAA 60.181 39.130 14.16 0.00 45.78 1.94
350 351 2.360483 ACGATGCATTGTCCACACAAAA 59.640 40.909 14.16 0.00 45.78 2.44
351 352 1.952990 ACGATGCATTGTCCACACAAA 59.047 42.857 14.16 0.00 45.78 2.83
352 353 1.266446 CACGATGCATTGTCCACACAA 59.734 47.619 17.05 0.00 46.71 3.33
353 354 0.873721 CACGATGCATTGTCCACACA 59.126 50.000 17.05 0.00 0.00 3.72
354 355 1.155889 TCACGATGCATTGTCCACAC 58.844 50.000 17.05 0.00 0.00 3.82
355 356 2.112380 ATCACGATGCATTGTCCACA 57.888 45.000 17.05 2.10 0.00 4.17
356 357 7.595311 TTATATATCACGATGCATTGTCCAC 57.405 36.000 17.05 0.00 0.00 4.02
382 383 9.627395 GTATAGATACGAAACTTCATGTGCTAT 57.373 33.333 0.00 0.00 0.00 2.97
383 384 8.847196 AGTATAGATACGAAACTTCATGTGCTA 58.153 33.333 0.00 0.00 38.28 3.49
384 385 7.717568 AGTATAGATACGAAACTTCATGTGCT 58.282 34.615 0.00 0.00 38.28 4.40
385 386 7.863375 AGAGTATAGATACGAAACTTCATGTGC 59.137 37.037 0.00 0.00 38.28 4.57
386 387 9.737427 AAGAGTATAGATACGAAACTTCATGTG 57.263 33.333 0.00 0.00 38.28 3.21
423 424 6.311723 CAAACCGAACTAGATATGCGTTTTT 58.688 36.000 0.00 0.00 0.00 1.94
424 425 5.672819 GCAAACCGAACTAGATATGCGTTTT 60.673 40.000 0.00 0.00 0.00 2.43
425 426 4.201783 GCAAACCGAACTAGATATGCGTTT 60.202 41.667 0.00 0.00 0.00 3.60
426 427 3.308866 GCAAACCGAACTAGATATGCGTT 59.691 43.478 0.00 0.00 0.00 4.84
427 428 2.864343 GCAAACCGAACTAGATATGCGT 59.136 45.455 0.00 0.00 0.00 5.24
428 429 2.863740 TGCAAACCGAACTAGATATGCG 59.136 45.455 0.00 0.00 35.40 4.73
429 430 5.424121 AATGCAAACCGAACTAGATATGC 57.576 39.130 0.00 0.00 0.00 3.14
430 431 5.682862 GCAAATGCAAACCGAACTAGATATG 59.317 40.000 0.00 0.00 41.59 1.78
431 432 5.821204 GCAAATGCAAACCGAACTAGATAT 58.179 37.500 0.00 0.00 41.59 1.63
432 433 5.229921 GCAAATGCAAACCGAACTAGATA 57.770 39.130 0.00 0.00 41.59 1.98
433 434 4.096732 GCAAATGCAAACCGAACTAGAT 57.903 40.909 0.00 0.00 41.59 1.98
434 435 3.552604 GCAAATGCAAACCGAACTAGA 57.447 42.857 0.00 0.00 41.59 2.43
447 448 1.134610 CCAGAATTCCCCTGCAAATGC 60.135 52.381 0.65 0.00 42.50 3.56
448 449 2.093869 CACCAGAATTCCCCTGCAAATG 60.094 50.000 0.65 0.00 0.00 2.32
449 450 2.181975 CACCAGAATTCCCCTGCAAAT 58.818 47.619 0.65 0.00 0.00 2.32
450 451 1.631405 CACCAGAATTCCCCTGCAAA 58.369 50.000 0.65 0.00 0.00 3.68
451 452 0.899717 GCACCAGAATTCCCCTGCAA 60.900 55.000 0.65 0.00 0.00 4.08
452 453 1.304381 GCACCAGAATTCCCCTGCA 60.304 57.895 0.65 0.00 0.00 4.41
453 454 1.000396 AGCACCAGAATTCCCCTGC 60.000 57.895 0.65 6.30 0.00 4.85
454 455 0.745845 CGAGCACCAGAATTCCCCTG 60.746 60.000 0.65 0.00 0.00 4.45
455 456 1.201429 ACGAGCACCAGAATTCCCCT 61.201 55.000 0.65 0.00 0.00 4.79
456 457 1.026718 CACGAGCACCAGAATTCCCC 61.027 60.000 0.65 0.00 0.00 4.81
547 561 1.376683 ATGGGCACATTGCGTACGT 60.377 52.632 17.90 0.00 46.21 3.57
637 651 0.108138 GTACTGTGTGCCTAGCTGGG 60.108 60.000 12.68 12.68 36.00 4.45
663 677 6.349280 CGGCCTGACTTATTTTTCTCATTTGA 60.349 38.462 0.00 0.00 0.00 2.69
667 683 4.843728 TCGGCCTGACTTATTTTTCTCAT 58.156 39.130 0.00 0.00 0.00 2.90
762 1564 4.103311 CCTAACCTAGCTCTTAATTGGGCT 59.897 45.833 0.00 0.00 38.62 5.19
763 1565 4.102681 TCCTAACCTAGCTCTTAATTGGGC 59.897 45.833 0.00 0.00 0.00 5.36
764 1566 5.888982 TCCTAACCTAGCTCTTAATTGGG 57.111 43.478 0.00 0.00 0.00 4.12
765 1567 7.509546 TCAATCCTAACCTAGCTCTTAATTGG 58.490 38.462 0.00 0.00 0.00 3.16
767 1569 9.165057 AGATCAATCCTAACCTAGCTCTTAATT 57.835 33.333 0.00 0.00 0.00 1.40
770 1572 9.830186 ATTAGATCAATCCTAACCTAGCTCTTA 57.170 33.333 0.00 0.00 0.00 2.10
811 1676 4.843728 AGAAGATTTGGCGAGTTGGAATA 58.156 39.130 0.00 0.00 0.00 1.75
821 1697 3.673746 TTGCGATAAGAAGATTTGGCG 57.326 42.857 0.00 0.00 0.00 5.69
979 2636 1.202639 TGTTGGCAGTAGTGTGTGAGG 60.203 52.381 0.00 0.00 0.00 3.86
980 2637 2.238942 TGTTGGCAGTAGTGTGTGAG 57.761 50.000 0.00 0.00 0.00 3.51
1480 3143 1.363807 CGATGCTCGCCATGTAGGA 59.636 57.895 0.00 0.00 41.22 2.94
1496 3159 0.878523 CACGTCAAAAGGAGTGCCGA 60.879 55.000 0.00 0.00 39.96 5.54
1713 3377 1.633852 GCGCTGTGGAGAGCTTTCTG 61.634 60.000 0.00 0.00 41.50 3.02
1762 3451 3.044156 CCATCTTCCTCCTCTCCATCAA 58.956 50.000 0.00 0.00 0.00 2.57
1805 3494 4.700268 TCATTACCAACATGACATGTGC 57.300 40.909 21.49 0.00 44.07 4.57
1827 3516 2.054021 TCCACACCATCTTGTTCCTCA 58.946 47.619 0.00 0.00 0.00 3.86
1977 3775 4.321156 CGGATGATTGACACAATGTTTGGT 60.321 41.667 1.64 0.00 34.12 3.67
2087 3885 4.202101 ACAAGACGGCTCTCAGATAGATTG 60.202 45.833 0.00 0.00 32.41 2.67
2270 4068 4.620803 GCCACCTATCATGGTTATAGTCGG 60.621 50.000 0.00 0.00 38.45 4.79
2282 4080 1.967066 CTTCCGAGAGCCACCTATCAT 59.033 52.381 0.00 0.00 29.75 2.45
2283 4081 1.063942 TCTTCCGAGAGCCACCTATCA 60.064 52.381 0.00 0.00 29.75 2.15
2437 4235 0.920763 TGCCCTTCCATCACCTCCAT 60.921 55.000 0.00 0.00 0.00 3.41
2608 4418 9.871238 TCATAGAGCCCTTTATTATTCGATAAC 57.129 33.333 0.00 0.00 0.00 1.89
2782 4632 4.095932 TCTCGCTTCACGTATGTTACTCAT 59.904 41.667 0.00 0.00 44.19 2.90
2887 4742 2.090324 GGGGTTATGGTCTAGTAGGGGT 60.090 54.545 0.00 0.00 0.00 4.95
2902 4757 2.190538 GGGTTGTGCTACTAGGGGTTA 58.809 52.381 0.00 0.00 0.00 2.85
2925 4780 2.940158 TGCGACTATAACTGGGCTAGA 58.060 47.619 4.33 0.00 0.00 2.43
3000 4860 3.458189 CGCACCTAGGAAGATTGTTAGG 58.542 50.000 17.98 0.00 38.87 2.69
3060 4920 1.255342 GCGCATATGTACGTGTCACAG 59.745 52.381 0.30 0.00 0.00 3.66
3071 4931 2.202395 GCCCCCAATGCGCATATGT 61.202 57.895 25.61 5.02 0.00 2.29
3150 5468 6.756074 CCTTTTATTTTCATTTCCATAGCGCA 59.244 34.615 11.47 0.00 0.00 6.09
3215 5538 8.806146 ACACAATGCTTTTGAATAGGATTTAGT 58.194 29.630 0.10 0.51 32.24 2.24
3277 5600 7.617041 ATTTTTCTGTAAGCACTCCTACATC 57.383 36.000 0.00 0.00 0.00 3.06
3284 5607 7.486232 GCCATTTCTATTTTTCTGTAAGCACTC 59.514 37.037 0.00 0.00 0.00 3.51
3285 5608 7.039784 TGCCATTTCTATTTTTCTGTAAGCACT 60.040 33.333 0.00 0.00 0.00 4.40
3301 5624 5.425217 TGGTTCTCTAGATGTGCCATTTCTA 59.575 40.000 0.00 0.00 0.00 2.10
3354 5677 2.230653 TAGGTGGGCCATGTGTGCT 61.231 57.895 10.70 0.00 37.19 4.40
3377 5700 1.153353 CGAAGTAGCGAGCCCAAAAA 58.847 50.000 0.00 0.00 0.00 1.94
3428 8818 2.596452 ACGGATTATGCGCTATCTTCG 58.404 47.619 9.73 8.99 33.30 3.79
3453 8843 0.315251 TGACTCTCACCTTGCACTCG 59.685 55.000 0.00 0.00 0.00 4.18
3468 8858 2.578664 TGCACGATCCGCATGACT 59.421 55.556 0.00 0.00 33.55 3.41
3480 8870 2.789917 GCTGCTTGGAGATGCACG 59.210 61.111 0.00 0.00 35.20 5.34
3498 8888 0.044161 CGCGTACGCAGTTCAATAGC 60.044 55.000 36.44 6.00 37.78 2.97
3505 8895 1.804326 GGACATCGCGTACGCAGTT 60.804 57.895 36.44 21.54 37.78 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.