Multiple sequence alignment - TraesCS2B01G000800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G000800 chr2B 100.000 2738 0 0 1 2738 431358 434095 0.000000e+00 5057
1 TraesCS2B01G000800 chr2B 91.960 398 22 2 2351 2738 526828718 526828321 1.430000e-152 549
2 TraesCS2B01G000800 chr2B 90.955 398 26 2 2351 2738 583012394 583011997 6.720000e-146 527
3 TraesCS2B01G000800 chr1D 97.657 2347 50 4 1 2345 487307372 487305029 0.000000e+00 4024
4 TraesCS2B01G000800 chr1D 97.235 2351 57 6 1 2350 30698303 30695960 0.000000e+00 3975
5 TraesCS2B01G000800 chr3D 97.321 2352 57 5 1 2350 465175693 465178040 0.000000e+00 3989
6 TraesCS2B01G000800 chr3D 96.558 2353 75 4 1 2351 516403662 516401314 0.000000e+00 3892
7 TraesCS2B01G000800 chr7A 95.111 2352 108 5 1 2350 303752224 303749878 0.000000e+00 3699
8 TraesCS2B01G000800 chr1B 93.250 2074 123 14 1 2071 40302771 40300712 0.000000e+00 3038
9 TraesCS2B01G000800 chr1B 90.452 398 28 1 2351 2738 304923196 304922799 1.450000e-142 516
10 TraesCS2B01G000800 chr4B 92.527 2074 143 11 1 2071 272432845 272430781 0.000000e+00 2961
11 TraesCS2B01G000800 chr4B 90.704 398 27 2 2351 2738 235145719 235146116 3.120000e-144 521
12 TraesCS2B01G000800 chr4B 89.447 398 31 3 2351 2738 262179692 262179296 2.450000e-135 492
13 TraesCS2B01G000800 chr3A 95.951 1556 58 4 1 1554 706202318 706203870 0.000000e+00 2519
14 TraesCS2B01G000800 chr2A 95.373 1556 68 4 1 1554 130066348 130064795 0.000000e+00 2471
15 TraesCS2B01G000800 chr1A 94.902 765 39 0 1587 2351 347417584 347416820 0.000000e+00 1197
16 TraesCS2B01G000800 chr3B 92.211 398 21 4 2351 2738 261185890 261186287 3.080000e-154 555
17 TraesCS2B01G000800 chr7B 92.583 391 19 2 2352 2732 66827072 66827462 1.110000e-153 553
18 TraesCS2B01G000800 chr7B 91.709 398 23 2 2351 2738 65894501 65894104 6.670000e-151 544
19 TraesCS2B01G000800 chr7B 91.646 395 23 2 2351 2735 218197807 218197413 3.100000e-149 538
20 TraesCS2B01G000800 chr7B 90.955 398 26 2 2351 2738 247521935 247522332 6.720000e-146 527
21 TraesCS2B01G000800 chr7B 90.452 398 28 2 2351 2738 267394168 267394565 1.450000e-142 516
22 TraesCS2B01G000800 chr7B 90.452 398 27 2 2351 2738 211909535 211909931 5.230000e-142 514
23 TraesCS2B01G000800 chr7B 89.698 398 31 2 2351 2738 201068807 201068410 1.460000e-137 499
24 TraesCS2B01G000800 chr6B 91.139 395 25 2 2351 2735 375788379 375788773 6.720000e-146 527
25 TraesCS2B01G000800 chr6B 93.061 245 16 1 2106 2350 658921664 658921421 9.320000e-95 357
26 TraesCS2B01G000800 chr5B 90.886 395 26 2 2351 2735 323213357 323213751 3.120000e-144 521
27 TraesCS2B01G000800 chr5B 90.201 398 29 2 2351 2738 111652006 111652403 6.760000e-141 510
28 TraesCS2B01G000800 chr5B 84.697 379 58 0 2356 2734 34393632 34393254 1.990000e-101 379


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G000800 chr2B 431358 434095 2737 False 5057 5057 100.000 1 2738 1 chr2B.!!$F1 2737
1 TraesCS2B01G000800 chr1D 487305029 487307372 2343 True 4024 4024 97.657 1 2345 1 chr1D.!!$R2 2344
2 TraesCS2B01G000800 chr1D 30695960 30698303 2343 True 3975 3975 97.235 1 2350 1 chr1D.!!$R1 2349
3 TraesCS2B01G000800 chr3D 465175693 465178040 2347 False 3989 3989 97.321 1 2350 1 chr3D.!!$F1 2349
4 TraesCS2B01G000800 chr3D 516401314 516403662 2348 True 3892 3892 96.558 1 2351 1 chr3D.!!$R1 2350
5 TraesCS2B01G000800 chr7A 303749878 303752224 2346 True 3699 3699 95.111 1 2350 1 chr7A.!!$R1 2349
6 TraesCS2B01G000800 chr1B 40300712 40302771 2059 True 3038 3038 93.250 1 2071 1 chr1B.!!$R1 2070
7 TraesCS2B01G000800 chr4B 272430781 272432845 2064 True 2961 2961 92.527 1 2071 1 chr4B.!!$R2 2070
8 TraesCS2B01G000800 chr3A 706202318 706203870 1552 False 2519 2519 95.951 1 1554 1 chr3A.!!$F1 1553
9 TraesCS2B01G000800 chr2A 130064795 130066348 1553 True 2471 2471 95.373 1 1554 1 chr2A.!!$R1 1553
10 TraesCS2B01G000800 chr1A 347416820 347417584 764 True 1197 1197 94.902 1587 2351 1 chr1A.!!$R1 764

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
990 995 0.102481 CCGAACTCATCCGTTCCGAT 59.898 55.0 0.0 0.0 40.03 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2601 2609 0.032952 ACGCTCTGTGTTTCCGCTAA 59.967 50.0 0.0 0.0 0.0 3.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
144 146 5.477607 TTGATTGGAACGGAGAGAGTAAA 57.522 39.130 0.00 0.00 0.00 2.01
398 400 0.393132 TGTGTTTTGGTCACGCTCCA 60.393 50.000 0.00 0.00 38.48 3.86
573 575 1.710809 ACCCCACTTAGATGCAACCTT 59.289 47.619 0.00 0.00 0.00 3.50
596 598 3.693085 CACCTGAGCTTTATGCATGTTCT 59.307 43.478 10.16 0.70 45.94 3.01
877 879 8.888579 TTATTGCTTAGATTAGCTCTAACCAC 57.111 34.615 0.00 0.00 40.72 4.16
885 890 7.189079 AGATTAGCTCTAACCACTTTTAGCT 57.811 36.000 0.00 0.00 38.35 3.32
893 898 7.921214 GCTCTAACCACTTTTAGCTTTCTTTTT 59.079 33.333 0.00 0.00 0.00 1.94
974 979 1.745232 AATTTAATGTGAGGCGCCGA 58.255 45.000 23.20 9.31 0.00 5.54
989 994 1.509463 CCGAACTCATCCGTTCCGA 59.491 57.895 0.00 0.00 40.03 4.55
990 995 0.102481 CCGAACTCATCCGTTCCGAT 59.898 55.000 0.00 0.00 40.03 4.18
1007 1012 1.621992 GATACTGCCGAGATGGAGGA 58.378 55.000 0.00 0.00 42.00 3.71
1075 1080 4.923871 CAGCAGTGTTCGTAGTCATAGTTT 59.076 41.667 0.00 0.00 0.00 2.66
1094 1099 1.990799 TTGGTAACTGTCTGCGATCG 58.009 50.000 11.69 11.69 37.61 3.69
1253 1259 3.953612 TGAACTCTTGCTGTCATGGTTTT 59.046 39.130 0.00 0.00 0.00 2.43
1330 1336 9.168451 TGTCTATTATGCTTTTAATCCGTCAAA 57.832 29.630 0.00 0.00 0.00 2.69
1472 1478 7.229907 GGGAATACTTTCAGGTCACAACTTTTA 59.770 37.037 0.00 0.00 33.23 1.52
1660 1666 6.832384 AGATATACGGACGATTATATGGGTGT 59.168 38.462 0.00 0.00 0.00 4.16
1688 1694 6.369005 GCAAGTATACTGCAATGATGATGAC 58.631 40.000 6.06 0.00 0.00 3.06
1837 1843 9.912634 GATGGATGATTTCAGTTTAAGTTTTGA 57.087 29.630 0.00 0.00 0.00 2.69
1948 1955 2.542020 TGATTTCTTCCTGTCGTGCA 57.458 45.000 0.00 0.00 0.00 4.57
2004 2011 9.445878 ACTTATCATCAATATGTGGAGCATTAG 57.554 33.333 0.00 0.00 38.94 1.73
2174 2182 8.659925 TGAGTGTTGTAAAAGTCGGTTTTATA 57.340 30.769 6.83 2.87 41.59 0.98
2247 2255 3.169198 GCGCTAGCAACACTGGAC 58.831 61.111 16.45 0.00 44.35 4.02
2268 2276 0.037590 AGGCTACGCATCCAAAACCA 59.962 50.000 0.00 0.00 0.00 3.67
2312 2320 7.768240 ACGCATATATGGACATTTAGATACGA 58.232 34.615 14.51 0.00 0.00 3.43
2351 2359 0.766674 AGGGGTCCTGTTGTAGTGCA 60.767 55.000 0.00 0.00 29.57 4.57
2352 2360 0.328258 GGGGTCCTGTTGTAGTGCAT 59.672 55.000 0.00 0.00 0.00 3.96
2353 2361 1.679032 GGGGTCCTGTTGTAGTGCATC 60.679 57.143 0.00 0.00 0.00 3.91
2354 2362 1.679032 GGGTCCTGTTGTAGTGCATCC 60.679 57.143 0.00 0.00 0.00 3.51
2355 2363 1.003118 GGTCCTGTTGTAGTGCATCCA 59.997 52.381 0.00 0.00 0.00 3.41
2356 2364 2.350522 GTCCTGTTGTAGTGCATCCAG 58.649 52.381 0.00 2.61 0.00 3.86
2357 2365 2.028112 GTCCTGTTGTAGTGCATCCAGA 60.028 50.000 9.15 0.00 31.77 3.86
2358 2366 2.637382 TCCTGTTGTAGTGCATCCAGAA 59.363 45.455 9.15 0.00 31.77 3.02
2359 2367 3.264193 TCCTGTTGTAGTGCATCCAGAAT 59.736 43.478 9.15 0.00 31.77 2.40
2360 2368 3.624861 CCTGTTGTAGTGCATCCAGAATC 59.375 47.826 9.15 0.00 31.77 2.52
2361 2369 4.256110 CTGTTGTAGTGCATCCAGAATCA 58.744 43.478 0.00 0.00 31.77 2.57
2362 2370 4.256110 TGTTGTAGTGCATCCAGAATCAG 58.744 43.478 0.00 0.00 0.00 2.90
2363 2371 2.910199 TGTAGTGCATCCAGAATCAGC 58.090 47.619 0.00 0.00 0.00 4.26
2364 2372 2.216898 GTAGTGCATCCAGAATCAGCC 58.783 52.381 0.00 0.00 0.00 4.85
2365 2373 0.622136 AGTGCATCCAGAATCAGCCA 59.378 50.000 0.00 0.00 0.00 4.75
2366 2374 1.005097 AGTGCATCCAGAATCAGCCAA 59.995 47.619 0.00 0.00 0.00 4.52
2367 2375 1.820519 GTGCATCCAGAATCAGCCAAA 59.179 47.619 0.00 0.00 0.00 3.28
2368 2376 2.097036 TGCATCCAGAATCAGCCAAAG 58.903 47.619 0.00 0.00 0.00 2.77
2369 2377 2.097825 GCATCCAGAATCAGCCAAAGT 58.902 47.619 0.00 0.00 0.00 2.66
2370 2378 3.282021 GCATCCAGAATCAGCCAAAGTA 58.718 45.455 0.00 0.00 0.00 2.24
2371 2379 3.696051 GCATCCAGAATCAGCCAAAGTAA 59.304 43.478 0.00 0.00 0.00 2.24
2372 2380 4.439289 GCATCCAGAATCAGCCAAAGTAAC 60.439 45.833 0.00 0.00 0.00 2.50
2373 2381 4.365514 TCCAGAATCAGCCAAAGTAACA 57.634 40.909 0.00 0.00 0.00 2.41
2374 2382 4.072131 TCCAGAATCAGCCAAAGTAACAC 58.928 43.478 0.00 0.00 0.00 3.32
2375 2383 3.191371 CCAGAATCAGCCAAAGTAACACC 59.809 47.826 0.00 0.00 0.00 4.16
2376 2384 3.820467 CAGAATCAGCCAAAGTAACACCA 59.180 43.478 0.00 0.00 0.00 4.17
2377 2385 3.821033 AGAATCAGCCAAAGTAACACCAC 59.179 43.478 0.00 0.00 0.00 4.16
2378 2386 1.975660 TCAGCCAAAGTAACACCACC 58.024 50.000 0.00 0.00 0.00 4.61
2379 2387 1.493022 TCAGCCAAAGTAACACCACCT 59.507 47.619 0.00 0.00 0.00 4.00
2380 2388 2.092103 TCAGCCAAAGTAACACCACCTT 60.092 45.455 0.00 0.00 0.00 3.50
2381 2389 2.693074 CAGCCAAAGTAACACCACCTTT 59.307 45.455 0.00 0.00 0.00 3.11
2382 2390 2.693074 AGCCAAAGTAACACCACCTTTG 59.307 45.455 0.00 0.00 42.86 2.77
2383 2391 2.691011 GCCAAAGTAACACCACCTTTGA 59.309 45.455 11.73 0.00 44.90 2.69
2384 2392 3.131400 GCCAAAGTAACACCACCTTTGAA 59.869 43.478 11.73 0.00 44.90 2.69
2385 2393 4.736464 GCCAAAGTAACACCACCTTTGAAG 60.736 45.833 11.73 0.00 44.90 3.02
2397 2405 3.004752 CCTTTGAAGGGGTGATACCAG 57.995 52.381 1.68 0.00 41.02 4.00
2398 2406 2.357154 CCTTTGAAGGGGTGATACCAGG 60.357 54.545 1.68 0.00 41.02 4.45
2399 2407 0.623723 TTGAAGGGGTGATACCAGGC 59.376 55.000 0.00 0.00 41.02 4.85
2400 2408 0.548926 TGAAGGGGTGATACCAGGCA 60.549 55.000 0.00 0.00 41.02 4.75
2401 2409 0.107165 GAAGGGGTGATACCAGGCAC 60.107 60.000 0.00 0.00 41.02 5.01
2402 2410 1.910580 AAGGGGTGATACCAGGCACG 61.911 60.000 0.00 0.00 41.02 5.34
2403 2411 2.189521 GGGTGATACCAGGCACGG 59.810 66.667 0.00 0.00 41.02 4.94
2404 2412 2.363975 GGGTGATACCAGGCACGGA 61.364 63.158 0.00 0.00 41.02 4.69
2405 2413 1.144057 GGTGATACCAGGCACGGAG 59.856 63.158 0.00 0.00 38.42 4.63
2406 2414 1.144057 GTGATACCAGGCACGGAGG 59.856 63.158 0.00 0.00 0.00 4.30
2407 2415 2.109181 GATACCAGGCACGGAGGC 59.891 66.667 0.00 0.00 44.61 4.70
2434 2442 2.830475 GGGGCTCCCTCGTATTACA 58.170 57.895 4.74 0.00 41.34 2.41
2435 2443 0.680061 GGGGCTCCCTCGTATTACAG 59.320 60.000 4.74 0.00 41.34 2.74
2436 2444 0.680061 GGGCTCCCTCGTATTACAGG 59.320 60.000 0.00 0.90 0.00 4.00
2437 2445 1.411041 GGCTCCCTCGTATTACAGGT 58.589 55.000 9.83 0.00 0.00 4.00
2438 2446 1.761198 GGCTCCCTCGTATTACAGGTT 59.239 52.381 9.83 0.00 0.00 3.50
2439 2447 2.223994 GGCTCCCTCGTATTACAGGTTC 60.224 54.545 9.83 2.15 0.00 3.62
2440 2448 2.694109 GCTCCCTCGTATTACAGGTTCT 59.306 50.000 9.83 0.00 0.00 3.01
2441 2449 3.243468 GCTCCCTCGTATTACAGGTTCTC 60.243 52.174 9.83 0.00 0.00 2.87
2442 2450 3.294214 TCCCTCGTATTACAGGTTCTCC 58.706 50.000 9.83 0.00 0.00 3.71
2443 2451 3.028850 CCCTCGTATTACAGGTTCTCCA 58.971 50.000 9.83 0.00 35.89 3.86
2444 2452 3.068307 CCCTCGTATTACAGGTTCTCCAG 59.932 52.174 9.83 0.00 35.89 3.86
2445 2453 3.952323 CCTCGTATTACAGGTTCTCCAGA 59.048 47.826 0.00 0.00 35.89 3.86
2446 2454 4.202030 CCTCGTATTACAGGTTCTCCAGAC 60.202 50.000 0.00 0.00 35.89 3.51
2447 2455 4.338012 TCGTATTACAGGTTCTCCAGACA 58.662 43.478 0.00 0.00 35.89 3.41
2448 2456 4.768448 TCGTATTACAGGTTCTCCAGACAA 59.232 41.667 0.00 0.00 35.89 3.18
2449 2457 4.863131 CGTATTACAGGTTCTCCAGACAAC 59.137 45.833 0.00 0.00 35.89 3.32
2450 2458 5.336531 CGTATTACAGGTTCTCCAGACAACT 60.337 44.000 0.00 0.00 35.89 3.16
2451 2459 5.568620 ATTACAGGTTCTCCAGACAACTT 57.431 39.130 0.00 0.00 35.89 2.66
2452 2460 3.477210 ACAGGTTCTCCAGACAACTTC 57.523 47.619 0.00 0.00 35.89 3.01
2453 2461 2.771943 ACAGGTTCTCCAGACAACTTCA 59.228 45.455 0.00 0.00 35.89 3.02
2454 2462 3.181461 ACAGGTTCTCCAGACAACTTCAG 60.181 47.826 0.00 0.00 35.89 3.02
2455 2463 3.070159 CAGGTTCTCCAGACAACTTCAGA 59.930 47.826 0.00 0.00 35.89 3.27
2456 2464 3.711704 AGGTTCTCCAGACAACTTCAGAA 59.288 43.478 0.00 0.00 35.89 3.02
2457 2465 4.061596 GGTTCTCCAGACAACTTCAGAAG 58.938 47.826 8.77 8.77 0.00 2.85
2458 2466 4.443598 GGTTCTCCAGACAACTTCAGAAGT 60.444 45.833 10.27 10.27 45.46 3.01
2459 2467 4.327982 TCTCCAGACAACTTCAGAAGTG 57.672 45.455 16.85 12.66 41.91 3.16
2460 2468 3.960755 TCTCCAGACAACTTCAGAAGTGA 59.039 43.478 16.85 7.48 41.91 3.41
2461 2469 4.405680 TCTCCAGACAACTTCAGAAGTGAA 59.594 41.667 16.85 0.00 41.91 3.18
2482 2490 4.744795 AGAATTACTCTTCACCATCGCT 57.255 40.909 0.00 0.00 0.00 4.93
2483 2491 4.688021 AGAATTACTCTTCACCATCGCTC 58.312 43.478 0.00 0.00 0.00 5.03
2484 2492 2.961526 TTACTCTTCACCATCGCTCC 57.038 50.000 0.00 0.00 0.00 4.70
2485 2493 1.112113 TACTCTTCACCATCGCTCCC 58.888 55.000 0.00 0.00 0.00 4.30
2486 2494 1.144936 CTCTTCACCATCGCTCCCC 59.855 63.158 0.00 0.00 0.00 4.81
2487 2495 1.306141 TCTTCACCATCGCTCCCCT 60.306 57.895 0.00 0.00 0.00 4.79
2488 2496 1.144936 CTTCACCATCGCTCCCCTC 59.855 63.158 0.00 0.00 0.00 4.30
2489 2497 2.317149 CTTCACCATCGCTCCCCTCC 62.317 65.000 0.00 0.00 0.00 4.30
2490 2498 4.227134 CACCATCGCTCCCCTCCG 62.227 72.222 0.00 0.00 0.00 4.63
2491 2499 4.458829 ACCATCGCTCCCCTCCGA 62.459 66.667 0.00 0.00 37.91 4.55
2492 2500 3.154473 CCATCGCTCCCCTCCGAA 61.154 66.667 0.00 0.00 37.00 4.30
2493 2501 2.419198 CATCGCTCCCCTCCGAAG 59.581 66.667 0.00 0.00 37.00 3.79
2494 2502 2.042843 ATCGCTCCCCTCCGAAGT 60.043 61.111 0.00 0.00 37.00 3.01
2495 2503 2.427245 ATCGCTCCCCTCCGAAGTG 61.427 63.158 0.00 0.00 37.00 3.16
2496 2504 4.148825 CGCTCCCCTCCGAAGTGG 62.149 72.222 0.00 0.00 40.09 4.00
2497 2505 3.003763 GCTCCCCTCCGAAGTGGT 61.004 66.667 0.00 0.00 39.52 4.16
2498 2506 2.593956 GCTCCCCTCCGAAGTGGTT 61.594 63.158 0.00 0.00 39.52 3.67
2499 2507 1.262640 GCTCCCCTCCGAAGTGGTTA 61.263 60.000 0.00 0.00 39.52 2.85
2500 2508 1.497161 CTCCCCTCCGAAGTGGTTAT 58.503 55.000 0.00 0.00 39.52 1.89
2501 2509 1.413077 CTCCCCTCCGAAGTGGTTATC 59.587 57.143 0.00 0.00 39.52 1.75
2502 2510 1.200519 CCCCTCCGAAGTGGTTATCA 58.799 55.000 0.00 0.00 39.52 2.15
2503 2511 1.768870 CCCCTCCGAAGTGGTTATCAT 59.231 52.381 0.00 0.00 39.52 2.45
2504 2512 2.485479 CCCCTCCGAAGTGGTTATCATG 60.485 54.545 0.00 0.00 39.52 3.07
2505 2513 2.213499 CCTCCGAAGTGGTTATCATGC 58.787 52.381 0.00 0.00 39.52 4.06
2506 2514 2.419990 CCTCCGAAGTGGTTATCATGCA 60.420 50.000 0.00 0.00 39.52 3.96
2507 2515 3.470709 CTCCGAAGTGGTTATCATGCAT 58.529 45.455 0.00 0.00 39.52 3.96
2508 2516 3.879295 CTCCGAAGTGGTTATCATGCATT 59.121 43.478 0.00 0.00 39.52 3.56
2509 2517 3.627123 TCCGAAGTGGTTATCATGCATTG 59.373 43.478 0.00 0.00 39.52 2.82
2510 2518 3.365832 CGAAGTGGTTATCATGCATTGC 58.634 45.455 0.00 0.46 0.00 3.56
2511 2519 3.065786 CGAAGTGGTTATCATGCATTGCT 59.934 43.478 10.49 0.00 0.00 3.91
2512 2520 4.604976 GAAGTGGTTATCATGCATTGCTC 58.395 43.478 10.49 0.00 0.00 4.26
2513 2521 2.615447 AGTGGTTATCATGCATTGCTCG 59.385 45.455 10.49 0.86 0.00 5.03
2514 2522 1.948834 TGGTTATCATGCATTGCTCGG 59.051 47.619 10.49 0.00 0.00 4.63
2515 2523 2.221169 GGTTATCATGCATTGCTCGGA 58.779 47.619 10.49 5.17 0.00 4.55
2516 2524 2.618241 GGTTATCATGCATTGCTCGGAA 59.382 45.455 10.49 0.00 0.00 4.30
2517 2525 3.304257 GGTTATCATGCATTGCTCGGAAG 60.304 47.826 10.49 0.00 0.00 3.46
2518 2526 2.336945 ATCATGCATTGCTCGGAAGA 57.663 45.000 10.49 0.00 39.12 2.87
2519 2527 2.112380 TCATGCATTGCTCGGAAGAA 57.888 45.000 10.49 0.00 41.32 2.52
2520 2528 1.739466 TCATGCATTGCTCGGAAGAAC 59.261 47.619 10.49 0.00 41.32 3.01
2521 2529 0.729116 ATGCATTGCTCGGAAGAACG 59.271 50.000 10.49 0.00 41.32 3.95
2522 2530 1.298157 TGCATTGCTCGGAAGAACGG 61.298 55.000 10.49 0.00 41.32 4.44
2523 2531 1.425428 CATTGCTCGGAAGAACGGC 59.575 57.895 0.00 0.00 41.32 5.68
2524 2532 1.745489 ATTGCTCGGAAGAACGGCC 60.745 57.895 0.00 0.00 41.32 6.13
2525 2533 2.185310 ATTGCTCGGAAGAACGGCCT 62.185 55.000 0.00 0.00 41.32 5.19
2526 2534 2.047179 GCTCGGAAGAACGGCCTT 60.047 61.111 0.00 0.00 41.32 4.35
2527 2535 2.101233 GCTCGGAAGAACGGCCTTC 61.101 63.158 0.00 3.88 41.32 3.46
2528 2536 1.805945 CTCGGAAGAACGGCCTTCG 60.806 63.158 0.00 0.00 42.53 3.79
2529 2537 3.488090 CGGAAGAACGGCCTTCGC 61.488 66.667 0.00 2.27 42.53 4.70
2530 2538 2.047179 GGAAGAACGGCCTTCGCT 60.047 61.111 0.00 0.00 42.53 4.93
2531 2539 2.101233 GGAAGAACGGCCTTCGCTC 61.101 63.158 0.00 6.40 42.53 5.03
2532 2540 2.432628 AAGAACGGCCTTCGCTCG 60.433 61.111 0.00 0.00 43.89 5.03
2535 2543 4.681978 AACGGCCTTCGCTCGCTT 62.682 61.111 0.00 0.00 43.89 4.68
2538 2546 2.742372 GGCCTTCGCTCGCTTCAA 60.742 61.111 0.00 0.00 34.44 2.69
2539 2547 2.476499 GCCTTCGCTCGCTTCAAC 59.524 61.111 0.00 0.00 0.00 3.18
2540 2548 2.772189 CCTTCGCTCGCTTCAACG 59.228 61.111 0.00 0.00 0.00 4.10
2541 2549 2.094724 CTTCGCTCGCTTCAACGC 59.905 61.111 0.00 0.00 0.00 4.84
2542 2550 2.657757 CTTCGCTCGCTTCAACGCA 61.658 57.895 0.00 0.00 0.00 5.24
2543 2551 2.539972 CTTCGCTCGCTTCAACGCAG 62.540 60.000 0.00 0.00 0.00 5.18
2545 2553 2.086426 CGCTCGCTTCAACGCAGTA 61.086 57.895 0.00 0.00 45.00 2.74
2546 2554 1.416434 GCTCGCTTCAACGCAGTAC 59.584 57.895 0.00 0.00 45.00 2.73
2547 2555 1.956620 GCTCGCTTCAACGCAGTACC 61.957 60.000 0.00 0.00 45.00 3.34
2548 2556 1.674611 CTCGCTTCAACGCAGTACCG 61.675 60.000 0.00 0.00 45.00 4.02
2549 2557 2.474712 GCTTCAACGCAGTACCGC 59.525 61.111 0.00 0.00 45.00 5.68
2550 2558 2.314647 GCTTCAACGCAGTACCGCA 61.315 57.895 1.35 0.00 45.00 5.69
2551 2559 1.491563 CTTCAACGCAGTACCGCAC 59.508 57.895 1.35 0.00 45.00 5.34
2552 2560 0.944311 CTTCAACGCAGTACCGCACT 60.944 55.000 1.35 0.00 45.00 4.40
2553 2561 0.314618 TTCAACGCAGTACCGCACTA 59.685 50.000 1.35 0.00 45.00 2.74
2554 2562 0.387622 TCAACGCAGTACCGCACTAC 60.388 55.000 1.35 0.00 45.00 2.73
2556 2564 3.245315 CGCAGTACCGCACTACGC 61.245 66.667 1.35 0.00 37.23 4.42
2557 2565 2.884207 GCAGTACCGCACTACGCC 60.884 66.667 0.00 0.00 41.76 5.68
2558 2566 2.882876 CAGTACCGCACTACGCCT 59.117 61.111 0.00 0.00 41.76 5.52
2559 2567 1.996786 GCAGTACCGCACTACGCCTA 61.997 60.000 0.00 0.00 41.76 3.93
2560 2568 0.248377 CAGTACCGCACTACGCCTAC 60.248 60.000 0.00 0.00 41.76 3.18
2561 2569 1.064783 GTACCGCACTACGCCTACC 59.935 63.158 0.00 0.00 41.76 3.18
2562 2570 1.077501 TACCGCACTACGCCTACCT 60.078 57.895 0.00 0.00 41.76 3.08
2563 2571 0.680921 TACCGCACTACGCCTACCTT 60.681 55.000 0.00 0.00 41.76 3.50
2564 2572 0.680921 ACCGCACTACGCCTACCTTA 60.681 55.000 0.00 0.00 41.76 2.69
2565 2573 0.457035 CCGCACTACGCCTACCTTAA 59.543 55.000 0.00 0.00 41.76 1.85
2566 2574 1.135024 CCGCACTACGCCTACCTTAAA 60.135 52.381 0.00 0.00 41.76 1.52
2567 2575 1.922545 CGCACTACGCCTACCTTAAAC 59.077 52.381 0.00 0.00 37.30 2.01
2568 2576 2.416431 CGCACTACGCCTACCTTAAACT 60.416 50.000 0.00 0.00 37.30 2.66
2569 2577 3.185330 GCACTACGCCTACCTTAAACTC 58.815 50.000 0.00 0.00 32.94 3.01
2570 2578 3.367703 GCACTACGCCTACCTTAAACTCA 60.368 47.826 0.00 0.00 32.94 3.41
2571 2579 4.813027 CACTACGCCTACCTTAAACTCAA 58.187 43.478 0.00 0.00 0.00 3.02
2572 2580 4.863131 CACTACGCCTACCTTAAACTCAAG 59.137 45.833 0.00 0.00 0.00 3.02
2573 2581 4.768968 ACTACGCCTACCTTAAACTCAAGA 59.231 41.667 0.00 0.00 0.00 3.02
2574 2582 4.820894 ACGCCTACCTTAAACTCAAGAT 57.179 40.909 0.00 0.00 0.00 2.40
2575 2583 4.504858 ACGCCTACCTTAAACTCAAGATG 58.495 43.478 0.00 0.00 0.00 2.90
2576 2584 3.309954 CGCCTACCTTAAACTCAAGATGC 59.690 47.826 0.00 0.00 0.00 3.91
2577 2585 3.628032 GCCTACCTTAAACTCAAGATGCC 59.372 47.826 0.00 0.00 0.00 4.40
2578 2586 4.200092 CCTACCTTAAACTCAAGATGCCC 58.800 47.826 0.00 0.00 0.00 5.36
2579 2587 2.711542 ACCTTAAACTCAAGATGCCCG 58.288 47.619 0.00 0.00 0.00 6.13
2580 2588 2.017049 CCTTAAACTCAAGATGCCCGG 58.983 52.381 0.00 0.00 0.00 5.73
2581 2589 2.618045 CCTTAAACTCAAGATGCCCGGT 60.618 50.000 0.00 0.00 0.00 5.28
2582 2590 2.396590 TAAACTCAAGATGCCCGGTC 57.603 50.000 0.00 0.00 0.00 4.79
2583 2591 0.322546 AAACTCAAGATGCCCGGTCC 60.323 55.000 0.00 0.00 0.00 4.46
2584 2592 1.488705 AACTCAAGATGCCCGGTCCA 61.489 55.000 0.00 0.00 0.00 4.02
2585 2593 1.450312 CTCAAGATGCCCGGTCCAC 60.450 63.158 0.00 0.00 0.00 4.02
2586 2594 2.819595 CAAGATGCCCGGTCCACG 60.820 66.667 0.00 0.00 43.80 4.94
2595 2603 3.702048 CGGTCCACGGGGTGTCAT 61.702 66.667 2.12 0.00 39.42 3.06
2596 2604 2.267961 GGTCCACGGGGTGTCATC 59.732 66.667 2.12 0.00 34.93 2.92
2597 2605 2.589157 GGTCCACGGGGTGTCATCA 61.589 63.158 2.12 0.00 34.93 3.07
2598 2606 1.375523 GTCCACGGGGTGTCATCAC 60.376 63.158 2.12 0.00 43.19 3.06
2618 2626 0.438830 CGTTAGCGGAAACACAGAGC 59.561 55.000 0.00 0.00 0.00 4.09
2619 2627 0.438830 GTTAGCGGAAACACAGAGCG 59.561 55.000 0.00 0.00 0.00 5.03
2620 2628 0.032952 TTAGCGGAAACACAGAGCGT 59.967 50.000 0.00 0.00 0.00 5.07
2621 2629 0.032952 TAGCGGAAACACAGAGCGTT 59.967 50.000 0.00 0.00 0.00 4.84
2622 2630 1.204312 GCGGAAACACAGAGCGTTC 59.796 57.895 0.00 0.00 0.00 3.95
2623 2631 1.860078 CGGAAACACAGAGCGTTCC 59.140 57.895 0.00 0.00 0.00 3.62
2624 2632 0.600255 CGGAAACACAGAGCGTTCCT 60.600 55.000 0.00 0.00 0.00 3.36
2625 2633 1.594331 GGAAACACAGAGCGTTCCTT 58.406 50.000 0.00 0.00 0.00 3.36
2626 2634 2.762745 GGAAACACAGAGCGTTCCTTA 58.237 47.619 0.00 0.00 0.00 2.69
2627 2635 2.479275 GGAAACACAGAGCGTTCCTTAC 59.521 50.000 0.00 0.00 0.00 2.34
2635 2643 4.248402 CGTTCCTTACGTGCGGAA 57.752 55.556 14.19 14.19 45.14 4.30
2636 2644 2.067616 CGTTCCTTACGTGCGGAAG 58.932 57.895 17.44 9.42 45.14 3.46
2637 2645 0.387622 CGTTCCTTACGTGCGGAAGA 60.388 55.000 17.16 2.03 45.14 2.87
2638 2646 1.347320 GTTCCTTACGTGCGGAAGAG 58.653 55.000 17.16 8.10 39.80 2.85
2639 2647 0.963962 TTCCTTACGTGCGGAAGAGT 59.036 50.000 17.16 0.00 38.29 3.24
2640 2648 1.825090 TCCTTACGTGCGGAAGAGTA 58.175 50.000 17.16 0.91 38.29 2.59
2641 2649 2.372264 TCCTTACGTGCGGAAGAGTAT 58.628 47.619 17.16 0.00 38.29 2.12
2642 2650 2.098607 TCCTTACGTGCGGAAGAGTATG 59.901 50.000 17.16 1.38 38.29 2.39
2643 2651 1.852895 CTTACGTGCGGAAGAGTATGC 59.147 52.381 10.78 0.00 38.29 3.14
2644 2652 0.248336 TACGTGCGGAAGAGTATGCG 60.248 55.000 0.00 0.00 37.19 4.73
2645 2653 2.230940 CGTGCGGAAGAGTATGCGG 61.231 63.158 0.00 0.00 34.46 5.69
2646 2654 1.153628 GTGCGGAAGAGTATGCGGT 60.154 57.895 0.00 0.00 34.46 5.68
2647 2655 1.153647 TGCGGAAGAGTATGCGGTG 60.154 57.895 0.00 0.00 34.46 4.94
2648 2656 1.883084 GCGGAAGAGTATGCGGTGG 60.883 63.158 0.00 0.00 34.46 4.61
2649 2657 1.883084 CGGAAGAGTATGCGGTGGC 60.883 63.158 0.00 0.00 40.52 5.01
2650 2658 1.522569 GGAAGAGTATGCGGTGGCT 59.477 57.895 0.00 0.00 40.82 4.75
2651 2659 0.530870 GGAAGAGTATGCGGTGGCTC 60.531 60.000 0.00 0.00 40.82 4.70
2652 2660 0.461961 GAAGAGTATGCGGTGGCTCT 59.538 55.000 0.00 0.00 39.70 4.09
2653 2661 1.681793 GAAGAGTATGCGGTGGCTCTA 59.318 52.381 0.00 0.00 37.33 2.43
2654 2662 1.323412 AGAGTATGCGGTGGCTCTAG 58.677 55.000 0.00 0.00 40.82 2.43
2655 2663 0.319125 GAGTATGCGGTGGCTCTAGC 60.319 60.000 0.00 0.00 40.82 3.42
2656 2664 1.043116 AGTATGCGGTGGCTCTAGCA 61.043 55.000 4.07 11.19 44.36 3.49
2657 2665 0.598680 GTATGCGGTGGCTCTAGCAG 60.599 60.000 4.07 0.00 43.20 4.24
2665 2673 4.403976 GCTCTAGCAGCCGTACAC 57.596 61.111 0.00 0.00 43.17 2.90
2666 2674 1.810532 GCTCTAGCAGCCGTACACT 59.189 57.895 0.00 0.00 43.17 3.55
2667 2675 1.022735 GCTCTAGCAGCCGTACACTA 58.977 55.000 0.00 0.00 43.17 2.74
2668 2676 1.404391 GCTCTAGCAGCCGTACACTAA 59.596 52.381 0.00 0.00 43.17 2.24
2669 2677 2.541999 GCTCTAGCAGCCGTACACTAAG 60.542 54.545 0.00 0.00 43.17 2.18
2670 2678 2.683867 CTCTAGCAGCCGTACACTAAGT 59.316 50.000 0.00 0.00 0.00 2.24
2671 2679 2.422479 TCTAGCAGCCGTACACTAAGTG 59.578 50.000 0.00 0.00 39.75 3.16
2673 2681 1.067776 AGCAGCCGTACACTAAGTGTC 60.068 52.381 0.00 0.00 43.92 3.67
2674 2682 1.992170 CAGCCGTACACTAAGTGTCC 58.008 55.000 0.00 0.00 43.92 4.02
2675 2683 1.544691 CAGCCGTACACTAAGTGTCCT 59.455 52.381 0.00 0.00 43.92 3.85
2676 2684 1.817447 AGCCGTACACTAAGTGTCCTC 59.183 52.381 0.00 0.00 43.92 3.71
2677 2685 1.817447 GCCGTACACTAAGTGTCCTCT 59.183 52.381 0.00 0.00 43.92 3.69
2678 2686 2.159407 GCCGTACACTAAGTGTCCTCTC 60.159 54.545 0.00 0.00 43.92 3.20
2679 2687 2.422832 CCGTACACTAAGTGTCCTCTCC 59.577 54.545 0.00 0.00 43.92 3.71
2680 2688 3.345414 CGTACACTAAGTGTCCTCTCCT 58.655 50.000 0.00 0.00 43.92 3.69
2681 2689 4.511527 CGTACACTAAGTGTCCTCTCCTA 58.488 47.826 0.00 0.00 43.92 2.94
2682 2690 5.124645 CGTACACTAAGTGTCCTCTCCTAT 58.875 45.833 0.00 0.00 43.92 2.57
2683 2691 5.236911 CGTACACTAAGTGTCCTCTCCTATC 59.763 48.000 0.00 0.00 43.92 2.08
2684 2692 5.194473 ACACTAAGTGTCCTCTCCTATCA 57.806 43.478 0.00 0.00 43.92 2.15
2685 2693 5.197451 ACACTAAGTGTCCTCTCCTATCAG 58.803 45.833 0.00 0.00 43.92 2.90
2686 2694 5.044772 ACACTAAGTGTCCTCTCCTATCAGA 60.045 44.000 0.00 0.00 43.92 3.27
2687 2695 5.888724 CACTAAGTGTCCTCTCCTATCAGAA 59.111 44.000 0.00 0.00 0.00 3.02
2688 2696 5.889289 ACTAAGTGTCCTCTCCTATCAGAAC 59.111 44.000 0.00 0.00 0.00 3.01
2689 2697 3.283751 AGTGTCCTCTCCTATCAGAACG 58.716 50.000 0.00 0.00 0.00 3.95
2690 2698 2.025155 TGTCCTCTCCTATCAGAACGC 58.975 52.381 0.00 0.00 0.00 4.84
2691 2699 2.025155 GTCCTCTCCTATCAGAACGCA 58.975 52.381 0.00 0.00 0.00 5.24
2692 2700 2.625790 GTCCTCTCCTATCAGAACGCAT 59.374 50.000 0.00 0.00 0.00 4.73
2693 2701 2.625314 TCCTCTCCTATCAGAACGCATG 59.375 50.000 0.00 0.00 0.00 4.06
2694 2702 2.625314 CCTCTCCTATCAGAACGCATGA 59.375 50.000 0.00 0.00 0.00 3.07
2695 2703 3.257873 CCTCTCCTATCAGAACGCATGAT 59.742 47.826 0.00 3.49 40.45 2.45
2696 2704 4.484236 CTCTCCTATCAGAACGCATGATC 58.516 47.826 0.00 0.00 38.36 2.92
2697 2705 3.057946 TCTCCTATCAGAACGCATGATCG 60.058 47.826 0.00 0.00 38.36 3.69
2698 2706 2.029918 TCCTATCAGAACGCATGATCGG 60.030 50.000 0.00 8.52 39.95 4.18
2699 2707 2.288457 CCTATCAGAACGCATGATCGGT 60.288 50.000 0.00 0.00 38.36 4.69
2700 2708 1.858091 ATCAGAACGCATGATCGGTC 58.142 50.000 0.00 0.00 45.80 4.79
2702 2710 4.088421 GAACGCATGATCGGTCGT 57.912 55.556 0.00 0.00 36.40 4.34
2703 2711 2.369870 GAACGCATGATCGGTCGTT 58.630 52.632 15.29 15.29 46.11 3.85
2704 2712 2.369870 AACGCATGATCGGTCGTTC 58.630 52.632 11.26 0.00 40.57 3.95
2705 2713 0.389296 AACGCATGATCGGTCGTTCA 60.389 50.000 11.26 6.59 40.57 3.18
2706 2714 0.802222 ACGCATGATCGGTCGTTCAG 60.802 55.000 0.00 4.36 0.00 3.02
2707 2715 0.525455 CGCATGATCGGTCGTTCAGA 60.525 55.000 0.00 0.00 0.00 3.27
2716 2724 3.906660 GTCGTTCAGACCATGGACA 57.093 52.632 21.47 0.00 43.95 4.02
2717 2725 2.163818 GTCGTTCAGACCATGGACAA 57.836 50.000 21.47 0.13 43.95 3.18
2718 2726 2.069273 GTCGTTCAGACCATGGACAAG 58.931 52.381 21.47 9.54 43.95 3.16
2719 2727 1.001974 TCGTTCAGACCATGGACAAGG 59.998 52.381 21.47 9.47 37.23 3.61
2720 2728 1.270839 CGTTCAGACCATGGACAAGGT 60.271 52.381 21.47 0.00 37.23 3.50
2721 2729 2.810400 CGTTCAGACCATGGACAAGGTT 60.810 50.000 21.47 0.00 37.23 3.50
2722 2730 3.556213 CGTTCAGACCATGGACAAGGTTA 60.556 47.826 21.47 0.00 37.23 2.85
2723 2731 3.981071 TCAGACCATGGACAAGGTTAG 57.019 47.619 21.47 0.00 38.50 2.34
2724 2732 3.516586 TCAGACCATGGACAAGGTTAGA 58.483 45.455 21.47 0.56 38.50 2.10
2725 2733 3.515502 TCAGACCATGGACAAGGTTAGAG 59.484 47.826 21.47 0.00 38.50 2.43
2726 2734 2.840651 AGACCATGGACAAGGTTAGAGG 59.159 50.000 21.47 0.00 38.50 3.69
2727 2735 2.838202 GACCATGGACAAGGTTAGAGGA 59.162 50.000 21.47 0.00 38.50 3.71
2728 2736 2.840651 ACCATGGACAAGGTTAGAGGAG 59.159 50.000 21.47 0.00 33.39 3.69
2729 2737 2.840651 CCATGGACAAGGTTAGAGGAGT 59.159 50.000 5.56 0.00 0.00 3.85
2730 2738 3.118592 CCATGGACAAGGTTAGAGGAGTC 60.119 52.174 5.56 0.00 0.00 3.36
2731 2739 2.537143 TGGACAAGGTTAGAGGAGTCC 58.463 52.381 0.00 0.00 44.37 3.85
2732 2740 1.477295 GGACAAGGTTAGAGGAGTCCG 59.523 57.143 2.76 0.00 36.55 4.79
2733 2741 1.477295 GACAAGGTTAGAGGAGTCCGG 59.523 57.143 2.76 0.00 0.00 5.14
2734 2742 0.175989 CAAGGTTAGAGGAGTCCGGC 59.824 60.000 2.76 0.00 0.00 6.13
2735 2743 0.252103 AAGGTTAGAGGAGTCCGGCA 60.252 55.000 2.76 0.00 0.00 5.69
2736 2744 0.971447 AGGTTAGAGGAGTCCGGCAC 60.971 60.000 2.76 0.00 0.00 5.01
2737 2745 1.255667 GGTTAGAGGAGTCCGGCACA 61.256 60.000 2.76 0.00 0.00 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
144 146 1.067283 CATCACACCTCGCTTCTCAGT 60.067 52.381 0.00 0.00 0.00 3.41
573 575 3.354948 ACATGCATAAAGCTCAGGTGA 57.645 42.857 0.00 0.00 45.94 4.02
596 598 8.739039 AGCTTTAGTATATGAATGTTTGCACAA 58.261 29.630 0.00 0.00 36.16 3.33
636 638 0.813610 GCTGCCGGTGTATATGTGCA 60.814 55.000 1.90 0.00 0.00 4.57
929 934 6.544197 ACACACAACAATAGGTACACAATTGA 59.456 34.615 13.59 0.00 35.18 2.57
989 994 1.145945 TCTCCTCCATCTCGGCAGTAT 59.854 52.381 0.00 0.00 33.14 2.12
990 995 0.551396 TCTCCTCCATCTCGGCAGTA 59.449 55.000 0.00 0.00 33.14 2.74
1007 1012 2.573869 CAGCCGTCCGTGATGTCT 59.426 61.111 0.00 0.00 0.00 3.41
1075 1080 1.990799 CGATCGCAGACAGTTACCAA 58.009 50.000 0.26 0.00 42.51 3.67
1094 1099 2.354510 TCGCAAGCAGTTAACATATGGC 59.645 45.455 8.61 5.07 37.18 4.40
1153 1159 9.260002 CTTTAGCAATGTACAAATCAAAAAGGT 57.740 29.630 0.00 0.00 0.00 3.50
1253 1259 9.598517 GACATAATGGGAAATTCAGCAATTTAA 57.401 29.630 0.00 0.00 41.47 1.52
1472 1478 7.660208 CCCGCCTAGATTACAACTATTACAAAT 59.340 37.037 0.00 0.00 0.00 2.32
1660 1666 3.949132 TCATTGCAGTATACTTGCCACA 58.051 40.909 18.52 5.45 0.00 4.17
1688 1694 0.459585 ATCGTGAACCGGGAACATCG 60.460 55.000 6.32 9.34 37.11 3.84
1837 1843 7.994911 TGCATAACCTGAATATTCTCTTGACAT 59.005 33.333 16.24 0.00 0.00 3.06
2174 2182 2.846193 ACCGTTGCAAGAGTACAACAT 58.154 42.857 0.00 0.00 45.08 2.71
2268 2276 2.671396 CGTTGCTAGCGTCTTTACCAAT 59.329 45.455 10.77 0.00 0.00 3.16
2351 2359 4.702131 GTGTTACTTTGGCTGATTCTGGAT 59.298 41.667 0.00 0.00 0.00 3.41
2352 2360 4.072131 GTGTTACTTTGGCTGATTCTGGA 58.928 43.478 0.00 0.00 0.00 3.86
2353 2361 3.191371 GGTGTTACTTTGGCTGATTCTGG 59.809 47.826 0.00 0.00 0.00 3.86
2354 2362 3.820467 TGGTGTTACTTTGGCTGATTCTG 59.180 43.478 0.00 0.00 0.00 3.02
2355 2363 3.821033 GTGGTGTTACTTTGGCTGATTCT 59.179 43.478 0.00 0.00 0.00 2.40
2356 2364 3.057526 GGTGGTGTTACTTTGGCTGATTC 60.058 47.826 0.00 0.00 0.00 2.52
2357 2365 2.890945 GGTGGTGTTACTTTGGCTGATT 59.109 45.455 0.00 0.00 0.00 2.57
2358 2366 2.108250 AGGTGGTGTTACTTTGGCTGAT 59.892 45.455 0.00 0.00 0.00 2.90
2359 2367 1.493022 AGGTGGTGTTACTTTGGCTGA 59.507 47.619 0.00 0.00 0.00 4.26
2360 2368 1.981256 AGGTGGTGTTACTTTGGCTG 58.019 50.000 0.00 0.00 0.00 4.85
2361 2369 2.693074 CAAAGGTGGTGTTACTTTGGCT 59.307 45.455 8.15 0.00 44.38 4.75
2362 2370 2.691011 TCAAAGGTGGTGTTACTTTGGC 59.309 45.455 14.18 0.00 46.70 4.52
2363 2371 4.202111 CCTTCAAAGGTGGTGTTACTTTGG 60.202 45.833 14.18 2.42 46.70 3.28
2365 2373 3.958147 CCCTTCAAAGGTGGTGTTACTTT 59.042 43.478 7.96 0.00 44.98 2.66
2366 2374 3.562182 CCCTTCAAAGGTGGTGTTACTT 58.438 45.455 7.96 0.00 44.98 2.24
2367 2375 2.158519 CCCCTTCAAAGGTGGTGTTACT 60.159 50.000 7.96 0.00 44.98 2.24
2368 2376 2.235891 CCCCTTCAAAGGTGGTGTTAC 58.764 52.381 7.96 0.00 44.98 2.50
2369 2377 1.854280 ACCCCTTCAAAGGTGGTGTTA 59.146 47.619 16.53 0.00 43.62 2.41
2370 2378 0.634465 ACCCCTTCAAAGGTGGTGTT 59.366 50.000 16.53 0.00 43.62 3.32
2371 2379 2.328051 ACCCCTTCAAAGGTGGTGT 58.672 52.632 16.53 3.89 43.62 4.16
2376 2384 2.308866 CTGGTATCACCCCTTCAAAGGT 59.691 50.000 7.96 0.00 44.98 3.50
2377 2385 2.357154 CCTGGTATCACCCCTTCAAAGG 60.357 54.545 1.54 1.54 46.06 3.11
2378 2386 2.945890 GCCTGGTATCACCCCTTCAAAG 60.946 54.545 0.00 0.00 37.50 2.77
2379 2387 1.005450 GCCTGGTATCACCCCTTCAAA 59.995 52.381 0.00 0.00 37.50 2.69
2380 2388 0.623723 GCCTGGTATCACCCCTTCAA 59.376 55.000 0.00 0.00 37.50 2.69
2381 2389 0.548926 TGCCTGGTATCACCCCTTCA 60.549 55.000 0.00 0.00 37.50 3.02
2382 2390 0.107165 GTGCCTGGTATCACCCCTTC 60.107 60.000 0.00 0.00 37.50 3.46
2383 2391 1.910580 CGTGCCTGGTATCACCCCTT 61.911 60.000 0.00 0.00 37.50 3.95
2384 2392 2.367202 CGTGCCTGGTATCACCCCT 61.367 63.158 0.00 0.00 37.50 4.79
2385 2393 2.189521 CGTGCCTGGTATCACCCC 59.810 66.667 0.00 0.00 37.50 4.95
2386 2394 2.189521 CCGTGCCTGGTATCACCC 59.810 66.667 0.00 0.00 37.50 4.61
2387 2395 1.144057 CTCCGTGCCTGGTATCACC 59.856 63.158 0.00 0.00 39.22 4.02
2388 2396 1.144057 CCTCCGTGCCTGGTATCAC 59.856 63.158 0.00 0.00 0.00 3.06
2389 2397 2.731571 GCCTCCGTGCCTGGTATCA 61.732 63.158 0.00 0.00 0.00 2.15
2390 2398 2.109181 GCCTCCGTGCCTGGTATC 59.891 66.667 0.00 0.00 0.00 2.24
2416 2424 0.680061 CTGTAATACGAGGGAGCCCC 59.320 60.000 0.91 2.16 45.90 5.80
2417 2425 0.680061 CCTGTAATACGAGGGAGCCC 59.320 60.000 0.00 0.00 0.00 5.19
2418 2426 1.411041 ACCTGTAATACGAGGGAGCC 58.589 55.000 11.59 0.00 33.16 4.70
2419 2427 2.694109 AGAACCTGTAATACGAGGGAGC 59.306 50.000 11.59 3.48 33.16 4.70
2420 2428 3.318557 GGAGAACCTGTAATACGAGGGAG 59.681 52.174 11.59 0.00 33.16 4.30
2421 2429 3.294214 GGAGAACCTGTAATACGAGGGA 58.706 50.000 11.59 0.00 33.16 4.20
2422 2430 3.028850 TGGAGAACCTGTAATACGAGGG 58.971 50.000 11.59 5.10 37.04 4.30
2423 2431 3.952323 TCTGGAGAACCTGTAATACGAGG 59.048 47.826 0.00 7.16 36.65 4.63
2424 2432 4.398358 TGTCTGGAGAACCTGTAATACGAG 59.602 45.833 0.00 0.00 36.65 4.18
2425 2433 4.338012 TGTCTGGAGAACCTGTAATACGA 58.662 43.478 0.00 0.00 36.65 3.43
2426 2434 4.713824 TGTCTGGAGAACCTGTAATACG 57.286 45.455 0.00 0.00 36.65 3.06
2427 2435 6.038997 AGTTGTCTGGAGAACCTGTAATAC 57.961 41.667 6.94 0.00 35.43 1.89
2428 2436 6.269077 TGAAGTTGTCTGGAGAACCTGTAATA 59.731 38.462 6.94 0.00 35.43 0.98
2429 2437 5.071788 TGAAGTTGTCTGGAGAACCTGTAAT 59.928 40.000 6.94 0.00 35.43 1.89
2430 2438 4.407621 TGAAGTTGTCTGGAGAACCTGTAA 59.592 41.667 6.94 0.00 35.43 2.41
2431 2439 3.964688 TGAAGTTGTCTGGAGAACCTGTA 59.035 43.478 6.94 0.00 35.43 2.74
2432 2440 2.771943 TGAAGTTGTCTGGAGAACCTGT 59.228 45.455 6.94 0.00 35.43 4.00
2433 2441 3.070159 TCTGAAGTTGTCTGGAGAACCTG 59.930 47.826 6.94 0.00 35.43 4.00
2434 2442 3.309296 TCTGAAGTTGTCTGGAGAACCT 58.691 45.455 6.94 0.00 35.43 3.50
2435 2443 3.753294 TCTGAAGTTGTCTGGAGAACC 57.247 47.619 6.94 0.00 35.43 3.62
2436 2444 4.509600 CACTTCTGAAGTTGTCTGGAGAAC 59.490 45.833 19.89 2.92 40.46 3.01
2437 2445 4.405680 TCACTTCTGAAGTTGTCTGGAGAA 59.594 41.667 19.89 0.00 40.46 2.87
2438 2446 3.960755 TCACTTCTGAAGTTGTCTGGAGA 59.039 43.478 19.89 9.19 40.46 3.71
2439 2447 4.327982 TCACTTCTGAAGTTGTCTGGAG 57.672 45.455 19.89 7.06 40.46 3.86
2440 2448 4.697514 CTTCACTTCTGAAGTTGTCTGGA 58.302 43.478 19.89 10.54 45.94 3.86
2461 2469 4.442192 GGAGCGATGGTGAAGAGTAATTCT 60.442 45.833 0.00 0.00 37.93 2.40
2462 2470 3.804873 GGAGCGATGGTGAAGAGTAATTC 59.195 47.826 0.00 0.00 0.00 2.17
2463 2471 3.432326 GGGAGCGATGGTGAAGAGTAATT 60.432 47.826 0.00 0.00 0.00 1.40
2464 2472 2.103263 GGGAGCGATGGTGAAGAGTAAT 59.897 50.000 0.00 0.00 0.00 1.89
2465 2473 1.480954 GGGAGCGATGGTGAAGAGTAA 59.519 52.381 0.00 0.00 0.00 2.24
2466 2474 1.112113 GGGAGCGATGGTGAAGAGTA 58.888 55.000 0.00 0.00 0.00 2.59
2467 2475 1.617947 GGGGAGCGATGGTGAAGAGT 61.618 60.000 0.00 0.00 0.00 3.24
2468 2476 1.144936 GGGGAGCGATGGTGAAGAG 59.855 63.158 0.00 0.00 0.00 2.85
2469 2477 1.306141 AGGGGAGCGATGGTGAAGA 60.306 57.895 0.00 0.00 0.00 2.87
2470 2478 1.144936 GAGGGGAGCGATGGTGAAG 59.855 63.158 0.00 0.00 0.00 3.02
2471 2479 2.367202 GGAGGGGAGCGATGGTGAA 61.367 63.158 0.00 0.00 0.00 3.18
2472 2480 2.764128 GGAGGGGAGCGATGGTGA 60.764 66.667 0.00 0.00 0.00 4.02
2473 2481 4.227134 CGGAGGGGAGCGATGGTG 62.227 72.222 0.00 0.00 0.00 4.17
2474 2482 3.976490 TTCGGAGGGGAGCGATGGT 62.976 63.158 0.00 0.00 0.00 3.55
2475 2483 3.154473 TTCGGAGGGGAGCGATGG 61.154 66.667 0.00 0.00 0.00 3.51
2476 2484 2.419198 CTTCGGAGGGGAGCGATG 59.581 66.667 0.00 0.00 0.00 3.84
2477 2485 2.042843 ACTTCGGAGGGGAGCGAT 60.043 61.111 0.00 0.00 0.00 4.58
2478 2486 3.068691 CACTTCGGAGGGGAGCGA 61.069 66.667 0.00 0.00 0.00 4.93
2484 2492 2.838736 CATGATAACCACTTCGGAGGG 58.161 52.381 0.00 0.00 38.63 4.30
2485 2493 2.213499 GCATGATAACCACTTCGGAGG 58.787 52.381 0.00 0.00 38.63 4.30
2486 2494 2.905075 TGCATGATAACCACTTCGGAG 58.095 47.619 0.00 0.00 38.63 4.63
2487 2495 3.558931 ATGCATGATAACCACTTCGGA 57.441 42.857 0.00 0.00 38.63 4.55
2488 2496 3.793129 GCAATGCATGATAACCACTTCGG 60.793 47.826 0.00 0.00 42.50 4.30
2489 2497 3.065786 AGCAATGCATGATAACCACTTCG 59.934 43.478 8.35 0.00 0.00 3.79
2490 2498 4.604976 GAGCAATGCATGATAACCACTTC 58.395 43.478 8.35 0.00 0.00 3.01
2491 2499 3.065786 CGAGCAATGCATGATAACCACTT 59.934 43.478 8.35 0.00 0.00 3.16
2492 2500 2.615447 CGAGCAATGCATGATAACCACT 59.385 45.455 8.35 0.00 0.00 4.00
2493 2501 2.287188 CCGAGCAATGCATGATAACCAC 60.287 50.000 8.35 0.00 0.00 4.16
2494 2502 1.948834 CCGAGCAATGCATGATAACCA 59.051 47.619 8.35 0.00 0.00 3.67
2495 2503 2.221169 TCCGAGCAATGCATGATAACC 58.779 47.619 8.35 0.00 0.00 2.85
2496 2504 3.561310 TCTTCCGAGCAATGCATGATAAC 59.439 43.478 8.35 0.00 0.00 1.89
2497 2505 3.807553 TCTTCCGAGCAATGCATGATAA 58.192 40.909 8.35 0.00 0.00 1.75
2498 2506 3.473923 TCTTCCGAGCAATGCATGATA 57.526 42.857 8.35 0.00 0.00 2.15
2499 2507 2.336945 TCTTCCGAGCAATGCATGAT 57.663 45.000 8.35 0.00 0.00 2.45
2500 2508 1.739466 GTTCTTCCGAGCAATGCATGA 59.261 47.619 8.35 0.00 0.00 3.07
2501 2509 1.530441 CGTTCTTCCGAGCAATGCATG 60.530 52.381 8.35 0.00 0.00 4.06
2502 2510 0.729116 CGTTCTTCCGAGCAATGCAT 59.271 50.000 8.35 0.00 0.00 3.96
2503 2511 1.298157 CCGTTCTTCCGAGCAATGCA 61.298 55.000 8.35 0.00 0.00 3.96
2504 2512 1.425428 CCGTTCTTCCGAGCAATGC 59.575 57.895 0.00 0.00 0.00 3.56
2505 2513 1.425428 GCCGTTCTTCCGAGCAATG 59.575 57.895 0.00 0.00 0.00 2.82
2506 2514 1.745489 GGCCGTTCTTCCGAGCAAT 60.745 57.895 0.00 0.00 0.00 3.56
2507 2515 2.358247 GGCCGTTCTTCCGAGCAA 60.358 61.111 0.00 0.00 0.00 3.91
2508 2516 2.781595 GAAGGCCGTTCTTCCGAGCA 62.782 60.000 0.00 0.00 37.70 4.26
2509 2517 2.047179 AAGGCCGTTCTTCCGAGC 60.047 61.111 0.00 0.00 0.00 5.03
2510 2518 1.805945 CGAAGGCCGTTCTTCCGAG 60.806 63.158 0.00 0.00 39.82 4.63
2511 2519 2.260434 CGAAGGCCGTTCTTCCGA 59.740 61.111 0.00 0.00 39.82 4.55
2512 2520 3.488090 GCGAAGGCCGTTCTTCCG 61.488 66.667 0.00 0.00 39.82 4.30
2513 2521 2.047179 AGCGAAGGCCGTTCTTCC 60.047 61.111 0.00 0.00 39.82 3.46
2514 2522 2.445438 CGAGCGAAGGCCGTTCTTC 61.445 63.158 0.00 0.00 44.73 2.87
2515 2523 2.432628 CGAGCGAAGGCCGTTCTT 60.433 61.111 0.00 0.00 44.73 2.52
2518 2526 4.681978 AAGCGAGCGAAGGCCGTT 62.682 61.111 0.00 0.00 41.24 4.44
2521 2529 2.742372 TTGAAGCGAGCGAAGGCC 60.742 61.111 0.00 0.00 41.24 5.19
2522 2530 2.476499 GTTGAAGCGAGCGAAGGC 59.524 61.111 0.00 0.00 40.37 4.35
2523 2531 2.772189 CGTTGAAGCGAGCGAAGG 59.228 61.111 0.00 0.00 0.00 3.46
2524 2532 2.094724 GCGTTGAAGCGAGCGAAG 59.905 61.111 0.00 0.00 0.00 3.79
2525 2533 2.657757 CTGCGTTGAAGCGAGCGAA 61.658 57.895 0.00 0.00 40.67 4.70
2526 2534 2.466520 TACTGCGTTGAAGCGAGCGA 62.467 55.000 0.00 0.00 40.67 4.93
2527 2535 2.086426 TACTGCGTTGAAGCGAGCG 61.086 57.895 0.00 0.00 40.67 5.03
2528 2536 1.416434 GTACTGCGTTGAAGCGAGC 59.584 57.895 0.00 0.00 40.67 5.03
2529 2537 1.674611 CGGTACTGCGTTGAAGCGAG 61.675 60.000 0.00 0.00 40.67 5.03
2530 2538 1.731613 CGGTACTGCGTTGAAGCGA 60.732 57.895 0.00 0.00 40.67 4.93
2531 2539 2.769617 CGGTACTGCGTTGAAGCG 59.230 61.111 0.00 0.00 40.67 4.68
2532 2540 2.314647 TGCGGTACTGCGTTGAAGC 61.315 57.895 21.37 1.01 37.81 3.86
2533 2541 0.944311 AGTGCGGTACTGCGTTGAAG 60.944 55.000 21.37 0.00 38.49 3.02
2534 2542 0.314618 TAGTGCGGTACTGCGTTGAA 59.685 50.000 21.37 0.52 40.65 2.69
2535 2543 0.387622 GTAGTGCGGTACTGCGTTGA 60.388 55.000 21.37 0.93 40.65 3.18
2536 2544 2.067616 GTAGTGCGGTACTGCGTTG 58.932 57.895 21.37 0.00 40.65 4.10
2537 2545 4.565531 GTAGTGCGGTACTGCGTT 57.434 55.556 21.37 14.07 40.65 4.84
2548 2556 3.185330 GAGTTTAAGGTAGGCGTAGTGC 58.815 50.000 0.00 0.00 45.38 4.40
2549 2557 4.445452 TGAGTTTAAGGTAGGCGTAGTG 57.555 45.455 0.00 0.00 0.00 2.74
2550 2558 4.768968 TCTTGAGTTTAAGGTAGGCGTAGT 59.231 41.667 0.00 0.00 0.00 2.73
2551 2559 5.320549 TCTTGAGTTTAAGGTAGGCGTAG 57.679 43.478 0.00 0.00 0.00 3.51
2552 2560 5.657474 CATCTTGAGTTTAAGGTAGGCGTA 58.343 41.667 0.00 0.00 0.00 4.42
2553 2561 4.504858 CATCTTGAGTTTAAGGTAGGCGT 58.495 43.478 0.00 0.00 0.00 5.68
2554 2562 3.309954 GCATCTTGAGTTTAAGGTAGGCG 59.690 47.826 0.00 0.00 0.00 5.52
2555 2563 3.628032 GGCATCTTGAGTTTAAGGTAGGC 59.372 47.826 0.00 0.00 0.00 3.93
2556 2564 4.200092 GGGCATCTTGAGTTTAAGGTAGG 58.800 47.826 0.00 0.00 0.00 3.18
2557 2565 3.871594 CGGGCATCTTGAGTTTAAGGTAG 59.128 47.826 0.00 0.00 0.00 3.18
2558 2566 3.370103 CCGGGCATCTTGAGTTTAAGGTA 60.370 47.826 0.00 0.00 0.00 3.08
2559 2567 2.618045 CCGGGCATCTTGAGTTTAAGGT 60.618 50.000 0.00 0.00 0.00 3.50
2560 2568 2.017049 CCGGGCATCTTGAGTTTAAGG 58.983 52.381 0.00 0.00 0.00 2.69
2561 2569 2.678336 GACCGGGCATCTTGAGTTTAAG 59.322 50.000 0.00 0.00 0.00 1.85
2562 2570 2.617021 GGACCGGGCATCTTGAGTTTAA 60.617 50.000 11.00 0.00 0.00 1.52
2563 2571 1.065709 GGACCGGGCATCTTGAGTTTA 60.066 52.381 11.00 0.00 0.00 2.01
2564 2572 0.322546 GGACCGGGCATCTTGAGTTT 60.323 55.000 11.00 0.00 0.00 2.66
2565 2573 1.299976 GGACCGGGCATCTTGAGTT 59.700 57.895 11.00 0.00 0.00 3.01
2566 2574 1.918293 TGGACCGGGCATCTTGAGT 60.918 57.895 11.00 0.00 0.00 3.41
2567 2575 1.450312 GTGGACCGGGCATCTTGAG 60.450 63.158 11.00 0.00 0.00 3.02
2568 2576 2.668632 GTGGACCGGGCATCTTGA 59.331 61.111 11.00 0.00 0.00 3.02
2569 2577 2.819595 CGTGGACCGGGCATCTTG 60.820 66.667 11.00 0.00 0.00 3.02
2578 2586 3.659089 GATGACACCCCGTGGACCG 62.659 68.421 0.00 0.00 37.94 4.79
2579 2587 2.267961 GATGACACCCCGTGGACC 59.732 66.667 0.00 0.00 37.94 4.46
2580 2588 1.375523 GTGATGACACCCCGTGGAC 60.376 63.158 0.00 0.00 40.74 4.02
2581 2589 3.065306 GTGATGACACCCCGTGGA 58.935 61.111 0.00 0.00 40.74 4.02
2599 2607 0.438830 GCTCTGTGTTTCCGCTAACG 59.561 55.000 0.00 0.00 39.67 3.18
2600 2608 0.438830 CGCTCTGTGTTTCCGCTAAC 59.561 55.000 0.00 0.00 0.00 2.34
2601 2609 0.032952 ACGCTCTGTGTTTCCGCTAA 59.967 50.000 0.00 0.00 0.00 3.09
2602 2610 0.032952 AACGCTCTGTGTTTCCGCTA 59.967 50.000 0.00 0.00 31.91 4.26
2603 2611 1.222115 GAACGCTCTGTGTTTCCGCT 61.222 55.000 0.00 0.00 36.34 5.52
2604 2612 1.204312 GAACGCTCTGTGTTTCCGC 59.796 57.895 0.00 0.00 36.34 5.54
2605 2613 0.600255 AGGAACGCTCTGTGTTTCCG 60.600 55.000 0.00 0.00 36.34 4.30
2606 2614 1.594331 AAGGAACGCTCTGTGTTTCC 58.406 50.000 0.00 0.00 36.34 3.13
2607 2615 2.155155 CGTAAGGAACGCTCTGTGTTTC 59.845 50.000 0.00 0.00 46.10 2.78
2608 2616 2.132762 CGTAAGGAACGCTCTGTGTTT 58.867 47.619 0.00 0.00 46.10 2.83
2609 2617 1.779569 CGTAAGGAACGCTCTGTGTT 58.220 50.000 0.00 0.00 46.10 3.32
2610 2618 3.491581 CGTAAGGAACGCTCTGTGT 57.508 52.632 0.00 0.00 46.10 3.72
2619 2627 1.336609 ACTCTTCCGCACGTAAGGAAC 60.337 52.381 16.93 0.00 41.19 3.62
2620 2628 0.963962 ACTCTTCCGCACGTAAGGAA 59.036 50.000 18.94 18.94 43.57 3.36
2621 2629 1.825090 TACTCTTCCGCACGTAAGGA 58.175 50.000 7.04 7.04 46.39 3.36
2622 2630 2.460918 CATACTCTTCCGCACGTAAGG 58.539 52.381 2.32 2.32 46.39 2.69
2624 2632 1.796253 CGCATACTCTTCCGCACGTAA 60.796 52.381 0.00 0.00 0.00 3.18
2625 2633 0.248336 CGCATACTCTTCCGCACGTA 60.248 55.000 0.00 0.00 0.00 3.57
2626 2634 1.516386 CGCATACTCTTCCGCACGT 60.516 57.895 0.00 0.00 0.00 4.49
2627 2635 2.230940 CCGCATACTCTTCCGCACG 61.231 63.158 0.00 0.00 0.00 5.34
2628 2636 1.153628 ACCGCATACTCTTCCGCAC 60.154 57.895 0.00 0.00 0.00 5.34
2629 2637 1.153647 CACCGCATACTCTTCCGCA 60.154 57.895 0.00 0.00 0.00 5.69
2630 2638 1.883084 CCACCGCATACTCTTCCGC 60.883 63.158 0.00 0.00 0.00 5.54
2631 2639 1.883084 GCCACCGCATACTCTTCCG 60.883 63.158 0.00 0.00 34.03 4.30
2632 2640 0.530870 GAGCCACCGCATACTCTTCC 60.531 60.000 0.00 0.00 37.52 3.46
2633 2641 0.461961 AGAGCCACCGCATACTCTTC 59.538 55.000 0.00 0.00 36.05 2.87
2634 2642 1.683917 CTAGAGCCACCGCATACTCTT 59.316 52.381 0.00 0.00 40.01 2.85
2635 2643 1.323412 CTAGAGCCACCGCATACTCT 58.677 55.000 0.00 0.00 42.08 3.24
2636 2644 0.319125 GCTAGAGCCACCGCATACTC 60.319 60.000 0.00 0.00 37.52 2.59
2637 2645 1.043116 TGCTAGAGCCACCGCATACT 61.043 55.000 0.00 0.00 41.18 2.12
2638 2646 0.598680 CTGCTAGAGCCACCGCATAC 60.599 60.000 0.00 0.00 41.18 2.39
2639 2647 1.742146 CTGCTAGAGCCACCGCATA 59.258 57.895 0.00 0.00 41.18 3.14
2640 2648 2.503061 CTGCTAGAGCCACCGCAT 59.497 61.111 0.00 0.00 41.18 4.73
2641 2649 4.457496 GCTGCTAGAGCCACCGCA 62.457 66.667 0.00 0.00 42.54 5.69
2649 2657 2.683867 ACTTAGTGTACGGCTGCTAGAG 59.316 50.000 0.00 0.00 0.00 2.43
2650 2658 2.422479 CACTTAGTGTACGGCTGCTAGA 59.578 50.000 3.88 0.00 0.00 2.43
2651 2659 2.163815 ACACTTAGTGTACGGCTGCTAG 59.836 50.000 17.13 0.00 45.56 3.42
2652 2660 2.165167 ACACTTAGTGTACGGCTGCTA 58.835 47.619 17.13 0.00 45.56 3.49
2653 2661 0.966920 ACACTTAGTGTACGGCTGCT 59.033 50.000 17.13 0.00 45.56 4.24
2654 2662 3.509388 ACACTTAGTGTACGGCTGC 57.491 52.632 17.13 0.00 45.56 5.25
2663 2671 5.441500 TCTGATAGGAGAGGACACTTAGTG 58.558 45.833 11.21 11.21 39.75 2.74
2664 2672 5.718801 TCTGATAGGAGAGGACACTTAGT 57.281 43.478 0.00 0.00 0.00 2.24
2665 2673 5.008217 CGTTCTGATAGGAGAGGACACTTAG 59.992 48.000 0.00 0.00 0.00 2.18
2666 2674 4.882427 CGTTCTGATAGGAGAGGACACTTA 59.118 45.833 0.00 0.00 0.00 2.24
2667 2675 3.697045 CGTTCTGATAGGAGAGGACACTT 59.303 47.826 0.00 0.00 0.00 3.16
2668 2676 3.283751 CGTTCTGATAGGAGAGGACACT 58.716 50.000 0.00 0.00 0.00 3.55
2669 2677 2.223618 GCGTTCTGATAGGAGAGGACAC 60.224 54.545 0.00 0.00 0.00 3.67
2670 2678 2.025155 GCGTTCTGATAGGAGAGGACA 58.975 52.381 0.00 0.00 0.00 4.02
2671 2679 2.025155 TGCGTTCTGATAGGAGAGGAC 58.975 52.381 0.00 0.00 0.00 3.85
2672 2680 2.437085 TGCGTTCTGATAGGAGAGGA 57.563 50.000 0.00 0.00 0.00 3.71
2673 2681 2.625314 TCATGCGTTCTGATAGGAGAGG 59.375 50.000 0.00 0.00 0.00 3.69
2674 2682 3.998099 TCATGCGTTCTGATAGGAGAG 57.002 47.619 0.00 0.00 0.00 3.20
2675 2683 3.057946 CGATCATGCGTTCTGATAGGAGA 60.058 47.826 0.00 0.00 33.56 3.71
2676 2684 3.240884 CGATCATGCGTTCTGATAGGAG 58.759 50.000 0.00 0.00 33.56 3.69
2677 2685 2.029918 CCGATCATGCGTTCTGATAGGA 60.030 50.000 13.75 0.00 44.24 2.94
2678 2686 2.288457 ACCGATCATGCGTTCTGATAGG 60.288 50.000 15.93 15.93 45.85 2.57
2679 2687 2.983136 GACCGATCATGCGTTCTGATAG 59.017 50.000 0.00 0.00 33.56 2.08
2680 2688 2.604614 CGACCGATCATGCGTTCTGATA 60.605 50.000 0.00 0.00 33.56 2.15
2681 2689 1.858091 GACCGATCATGCGTTCTGAT 58.142 50.000 0.00 0.00 36.07 2.90
2682 2690 0.525455 CGACCGATCATGCGTTCTGA 60.525 55.000 0.00 0.00 0.00 3.27
2683 2691 0.802222 ACGACCGATCATGCGTTCTG 60.802 55.000 0.00 0.00 32.42 3.02
2684 2692 0.108804 AACGACCGATCATGCGTTCT 60.109 50.000 9.72 0.00 42.53 3.01
2685 2693 2.369870 AACGACCGATCATGCGTTC 58.630 52.632 9.72 0.00 42.53 3.95
2686 2694 4.590487 AACGACCGATCATGCGTT 57.410 50.000 9.72 9.72 41.52 4.84
2687 2695 0.802222 CTGAACGACCGATCATGCGT 60.802 55.000 2.99 0.00 38.81 5.24
2688 2696 0.525455 TCTGAACGACCGATCATGCG 60.525 55.000 2.99 0.00 0.00 4.73
2689 2697 0.924090 GTCTGAACGACCGATCATGC 59.076 55.000 2.99 0.00 36.62 4.06
2698 2706 2.069273 CTTGTCCATGGTCTGAACGAC 58.931 52.381 12.58 0.00 42.07 4.34
2699 2707 1.001974 CCTTGTCCATGGTCTGAACGA 59.998 52.381 12.58 0.71 0.00 3.85
2700 2708 1.270839 ACCTTGTCCATGGTCTGAACG 60.271 52.381 12.58 0.00 34.13 3.95
2701 2709 2.568623 ACCTTGTCCATGGTCTGAAC 57.431 50.000 12.58 2.23 34.13 3.18
2702 2710 3.907474 TCTAACCTTGTCCATGGTCTGAA 59.093 43.478 12.58 0.00 37.82 3.02
2703 2711 3.515502 CTCTAACCTTGTCCATGGTCTGA 59.484 47.826 12.58 6.31 37.82 3.27
2704 2712 3.369892 CCTCTAACCTTGTCCATGGTCTG 60.370 52.174 12.58 3.79 37.82 3.51
2705 2713 2.840651 CCTCTAACCTTGTCCATGGTCT 59.159 50.000 12.58 0.00 37.82 3.85
2706 2714 2.838202 TCCTCTAACCTTGTCCATGGTC 59.162 50.000 12.58 6.87 37.82 4.02
2707 2715 2.840651 CTCCTCTAACCTTGTCCATGGT 59.159 50.000 12.58 0.00 40.16 3.55
2708 2716 2.840651 ACTCCTCTAACCTTGTCCATGG 59.159 50.000 4.97 4.97 0.00 3.66
2709 2717 3.118592 GGACTCCTCTAACCTTGTCCATG 60.119 52.174 0.00 0.00 42.32 3.66
2710 2718 3.108376 GGACTCCTCTAACCTTGTCCAT 58.892 50.000 0.00 0.00 42.32 3.41
2711 2719 2.537143 GGACTCCTCTAACCTTGTCCA 58.463 52.381 0.00 0.00 42.32 4.02
2712 2720 1.477295 CGGACTCCTCTAACCTTGTCC 59.523 57.143 0.00 0.00 40.16 4.02
2713 2721 1.477295 CCGGACTCCTCTAACCTTGTC 59.523 57.143 0.00 0.00 0.00 3.18
2714 2722 1.558233 CCGGACTCCTCTAACCTTGT 58.442 55.000 0.00 0.00 0.00 3.16
2715 2723 0.175989 GCCGGACTCCTCTAACCTTG 59.824 60.000 5.05 0.00 0.00 3.61
2716 2724 0.252103 TGCCGGACTCCTCTAACCTT 60.252 55.000 5.05 0.00 0.00 3.50
2717 2725 0.971447 GTGCCGGACTCCTCTAACCT 60.971 60.000 5.05 0.00 0.00 3.50
2718 2726 1.255667 TGTGCCGGACTCCTCTAACC 61.256 60.000 5.05 0.00 0.00 2.85
2719 2727 2.273908 TGTGCCGGACTCCTCTAAC 58.726 57.895 5.05 0.00 0.00 2.34
2720 2728 4.856789 TGTGCCGGACTCCTCTAA 57.143 55.556 5.05 0.00 0.00 2.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.