Multiple sequence alignment - TraesCS2B01G000700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G000700 chr2B 100.000 3380 0 0 1 3380 320400 317021 0.000000e+00 6242.0
1 TraesCS2B01G000700 chr2B 92.906 1607 71 12 880 2459 11573 9983 0.000000e+00 2296.0
2 TraesCS2B01G000700 chr2B 83.501 1394 192 25 981 2349 31300977 31302357 0.000000e+00 1266.0
3 TraesCS2B01G000700 chr2B 82.382 1402 174 33 976 2337 7776666 7778034 0.000000e+00 1153.0
4 TraesCS2B01G000700 chr2B 97.962 638 11 2 155 790 65053872 65053235 0.000000e+00 1105.0
5 TraesCS2B01G000700 chr2B 96.369 661 23 1 2721 3380 122924114 122923454 0.000000e+00 1086.0
6 TraesCS2B01G000700 chr2B 86.076 158 14 5 2521 2670 9963 9806 2.700000e-36 163.0
7 TraesCS2B01G000700 chr2B 96.774 31 1 0 1518 1548 544281312 544281282 6.000000e-03 52.8
8 TraesCS2B01G000700 chr2B 96.774 31 1 0 1518 1548 544710576 544710546 6.000000e-03 52.8
9 TraesCS2B01G000700 chr2A 89.986 1418 119 10 949 2349 1685631 1687042 0.000000e+00 1810.0
10 TraesCS2B01G000700 chr2A 97.516 644 14 2 149 790 10538948 10539591 0.000000e+00 1099.0
11 TraesCS2B01G000700 chr2A 90.850 153 5 3 1 148 1685445 1685593 2.660000e-46 196.0
12 TraesCS2B01G000700 chr6D 82.500 1400 180 27 976 2348 18097999 18099360 0.000000e+00 1168.0
13 TraesCS2B01G000700 chr2D 82.256 1392 195 27 976 2345 2613873 2615234 0.000000e+00 1155.0
14 TraesCS2B01G000700 chr2D 81.232 1055 143 23 1069 2108 2904948 2903934 0.000000e+00 800.0
15 TraesCS2B01G000700 chr5B 97.689 649 13 2 144 790 185509467 185510115 0.000000e+00 1114.0
16 TraesCS2B01G000700 chr5B 97.972 641 11 2 152 790 523366855 523367495 0.000000e+00 1110.0
17 TraesCS2B01G000700 chr5B 96.229 663 22 2 2721 3380 63251628 63252290 0.000000e+00 1083.0
18 TraesCS2B01G000700 chr5B 96.067 661 24 2 2721 3380 686832725 686832066 0.000000e+00 1075.0
19 TraesCS2B01G000700 chr1A 97.685 648 12 3 146 790 586359412 586360059 0.000000e+00 1110.0
20 TraesCS2B01G000700 chr1A 97.819 642 12 2 151 790 50926165 50925524 0.000000e+00 1107.0
21 TraesCS2B01G000700 chr6B 97.969 640 11 2 153 790 558600657 558600018 0.000000e+00 1109.0
22 TraesCS2B01G000700 chrUn 97.816 641 10 3 152 790 65833931 65833293 0.000000e+00 1103.0
23 TraesCS2B01G000700 chr4B 97.527 647 13 3 147 790 115552123 115552769 0.000000e+00 1103.0
24 TraesCS2B01G000700 chr5A 96.235 664 21 2 2721 3380 664388898 664389561 0.000000e+00 1085.0
25 TraesCS2B01G000700 chr5A 96.073 662 24 1 2721 3380 653659203 653659864 0.000000e+00 1077.0
26 TraesCS2B01G000700 chr6A 96.218 661 23 2 2721 3380 337217051 337216392 0.000000e+00 1081.0
27 TraesCS2B01G000700 chr7B 96.084 664 21 3 2721 3380 4216218 4216880 0.000000e+00 1077.0
28 TraesCS2B01G000700 chr7B 96.073 662 24 1 2721 3380 664046819 664047480 0.000000e+00 1077.0
29 TraesCS2B01G000700 chr3A 96.073 662 23 3 2721 3380 522044180 522043520 0.000000e+00 1075.0
30 TraesCS2B01G000700 chr7D 81.013 79 13 2 1757 1834 591204462 591204385 1.010000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G000700 chr2B 317021 320400 3379 True 6242.0 6242 100.000 1 3380 1 chr2B.!!$R1 3379
1 TraesCS2B01G000700 chr2B 31300977 31302357 1380 False 1266.0 1266 83.501 981 2349 1 chr2B.!!$F2 1368
2 TraesCS2B01G000700 chr2B 9806 11573 1767 True 1229.5 2296 89.491 880 2670 2 chr2B.!!$R6 1790
3 TraesCS2B01G000700 chr2B 7776666 7778034 1368 False 1153.0 1153 82.382 976 2337 1 chr2B.!!$F1 1361
4 TraesCS2B01G000700 chr2B 65053235 65053872 637 True 1105.0 1105 97.962 155 790 1 chr2B.!!$R2 635
5 TraesCS2B01G000700 chr2B 122923454 122924114 660 True 1086.0 1086 96.369 2721 3380 1 chr2B.!!$R3 659
6 TraesCS2B01G000700 chr2A 10538948 10539591 643 False 1099.0 1099 97.516 149 790 1 chr2A.!!$F1 641
7 TraesCS2B01G000700 chr2A 1685445 1687042 1597 False 1003.0 1810 90.418 1 2349 2 chr2A.!!$F2 2348
8 TraesCS2B01G000700 chr6D 18097999 18099360 1361 False 1168.0 1168 82.500 976 2348 1 chr6D.!!$F1 1372
9 TraesCS2B01G000700 chr2D 2613873 2615234 1361 False 1155.0 1155 82.256 976 2345 1 chr2D.!!$F1 1369
10 TraesCS2B01G000700 chr2D 2903934 2904948 1014 True 800.0 800 81.232 1069 2108 1 chr2D.!!$R1 1039
11 TraesCS2B01G000700 chr5B 185509467 185510115 648 False 1114.0 1114 97.689 144 790 1 chr5B.!!$F2 646
12 TraesCS2B01G000700 chr5B 523366855 523367495 640 False 1110.0 1110 97.972 152 790 1 chr5B.!!$F3 638
13 TraesCS2B01G000700 chr5B 63251628 63252290 662 False 1083.0 1083 96.229 2721 3380 1 chr5B.!!$F1 659
14 TraesCS2B01G000700 chr5B 686832066 686832725 659 True 1075.0 1075 96.067 2721 3380 1 chr5B.!!$R1 659
15 TraesCS2B01G000700 chr1A 586359412 586360059 647 False 1110.0 1110 97.685 146 790 1 chr1A.!!$F1 644
16 TraesCS2B01G000700 chr1A 50925524 50926165 641 True 1107.0 1107 97.819 151 790 1 chr1A.!!$R1 639
17 TraesCS2B01G000700 chr6B 558600018 558600657 639 True 1109.0 1109 97.969 153 790 1 chr6B.!!$R1 637
18 TraesCS2B01G000700 chrUn 65833293 65833931 638 True 1103.0 1103 97.816 152 790 1 chrUn.!!$R1 638
19 TraesCS2B01G000700 chr4B 115552123 115552769 646 False 1103.0 1103 97.527 147 790 1 chr4B.!!$F1 643
20 TraesCS2B01G000700 chr5A 664388898 664389561 663 False 1085.0 1085 96.235 2721 3380 1 chr5A.!!$F2 659
21 TraesCS2B01G000700 chr5A 653659203 653659864 661 False 1077.0 1077 96.073 2721 3380 1 chr5A.!!$F1 659
22 TraesCS2B01G000700 chr6A 337216392 337217051 659 True 1081.0 1081 96.218 2721 3380 1 chr6A.!!$R1 659
23 TraesCS2B01G000700 chr7B 4216218 4216880 662 False 1077.0 1077 96.084 2721 3380 1 chr7B.!!$F1 659
24 TraesCS2B01G000700 chr7B 664046819 664047480 661 False 1077.0 1077 96.073 2721 3380 1 chr7B.!!$F2 659
25 TraesCS2B01G000700 chr3A 522043520 522044180 660 True 1075.0 1075 96.073 2721 3380 1 chr3A.!!$R1 659

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
810 818 0.035439 TTTTGAGAGATGGCCCCGTC 60.035 55.0 0.0 0.0 0.0 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2463 2571 0.318107 CCAAGTGAGCGCAACAAAGG 60.318 55.0 11.47 7.17 0.0 3.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 41 6.208007 ACAAATGTATGTGGCATCCATAGATG 59.792 38.462 8.05 0.00 41.51 2.90
40 42 8.661145 ACAAATGTATGTGGCATCCATAGATGG 61.661 40.741 8.05 1.79 40.22 3.51
103 109 9.208022 GCATATGCAGTACTATTAGTTTCATCA 57.792 33.333 22.84 0.00 41.59 3.07
121 127 4.754618 TCATCATGTTTGTTAAGTGTCGCT 59.245 37.500 0.00 0.00 0.00 4.93
146 152 1.152839 CCGGGCCCCGTCAATTAAT 60.153 57.895 22.94 0.00 46.80 1.40
147 153 0.753848 CCGGGCCCCGTCAATTAATT 60.754 55.000 22.94 0.00 46.80 1.40
241 248 7.617225 TGATTATTCTCGAGGACCTTACAAAA 58.383 34.615 13.56 0.00 0.00 2.44
341 348 1.125711 GGGCCACATACCCGGTCTAT 61.126 60.000 4.39 0.00 37.67 1.98
642 650 0.981183 ATGAGTACCGCTCCACCAAA 59.019 50.000 0.00 0.00 43.48 3.28
790 798 2.310349 AGAGGTCTAGAGCTTCTCCACA 59.690 50.000 24.54 0.00 39.57 4.17
791 799 3.052944 AGAGGTCTAGAGCTTCTCCACAT 60.053 47.826 24.54 0.00 39.57 3.21
792 800 3.704061 GAGGTCTAGAGCTTCTCCACATT 59.296 47.826 24.54 0.00 39.57 2.71
793 801 4.100373 AGGTCTAGAGCTTCTCCACATTT 58.900 43.478 18.72 0.00 35.28 2.32
794 802 4.534103 AGGTCTAGAGCTTCTCCACATTTT 59.466 41.667 18.72 0.00 35.28 1.82
795 803 4.633565 GGTCTAGAGCTTCTCCACATTTTG 59.366 45.833 14.73 0.00 0.00 2.44
796 804 5.482908 GTCTAGAGCTTCTCCACATTTTGA 58.517 41.667 0.00 0.00 0.00 2.69
797 805 5.580297 GTCTAGAGCTTCTCCACATTTTGAG 59.420 44.000 0.00 0.00 0.00 3.02
798 806 4.630644 AGAGCTTCTCCACATTTTGAGA 57.369 40.909 0.00 0.00 35.89 3.27
799 807 4.577875 AGAGCTTCTCCACATTTTGAGAG 58.422 43.478 0.00 0.00 38.74 3.20
800 808 4.285517 AGAGCTTCTCCACATTTTGAGAGA 59.714 41.667 0.00 0.00 38.74 3.10
801 809 5.045724 AGAGCTTCTCCACATTTTGAGAGAT 60.046 40.000 0.00 0.00 38.74 2.75
802 810 4.942483 AGCTTCTCCACATTTTGAGAGATG 59.058 41.667 0.00 0.00 38.74 2.90
803 811 4.096081 GCTTCTCCACATTTTGAGAGATGG 59.904 45.833 0.00 0.00 38.74 3.51
804 812 3.614092 TCTCCACATTTTGAGAGATGGC 58.386 45.455 0.00 0.00 32.84 4.40
805 813 2.686915 CTCCACATTTTGAGAGATGGCC 59.313 50.000 0.00 0.00 0.00 5.36
806 814 1.753073 CCACATTTTGAGAGATGGCCC 59.247 52.381 0.00 0.00 0.00 5.80
807 815 1.753073 CACATTTTGAGAGATGGCCCC 59.247 52.381 0.00 0.00 0.00 5.80
808 816 1.027357 CATTTTGAGAGATGGCCCCG 58.973 55.000 0.00 0.00 0.00 5.73
809 817 0.625849 ATTTTGAGAGATGGCCCCGT 59.374 50.000 0.00 0.00 0.00 5.28
810 818 0.035439 TTTTGAGAGATGGCCCCGTC 60.035 55.000 0.00 0.00 0.00 4.79
811 819 1.198094 TTTGAGAGATGGCCCCGTCA 61.198 55.000 0.00 0.00 34.59 4.35
812 820 1.198094 TTGAGAGATGGCCCCGTCAA 61.198 55.000 0.00 4.78 34.59 3.18
813 821 0.982852 TGAGAGATGGCCCCGTCAAT 60.983 55.000 0.00 0.00 34.59 2.57
814 822 0.181350 GAGAGATGGCCCCGTCAATT 59.819 55.000 0.00 0.00 34.59 2.32
815 823 1.416401 GAGAGATGGCCCCGTCAATTA 59.584 52.381 0.00 0.00 34.59 1.40
816 824 1.843851 AGAGATGGCCCCGTCAATTAA 59.156 47.619 0.00 0.00 34.59 1.40
822 830 2.096248 GGCCCCGTCAATTAATTGTGA 58.904 47.619 23.95 6.88 38.84 3.58
850 858 3.684305 GGCCACATTTTGACTTATTTGGC 59.316 43.478 0.00 0.00 43.57 4.52
855 863 3.735237 TTTTGACTTATTTGGCGCCAA 57.265 38.095 37.30 37.30 0.00 4.52
856 864 3.951775 TTTGACTTATTTGGCGCCAAT 57.048 38.095 40.32 29.74 35.70 3.16
857 865 5.392767 TTTTGACTTATTTGGCGCCAATA 57.607 34.783 40.32 29.43 35.70 1.90
858 866 4.364415 TTGACTTATTTGGCGCCAATAC 57.636 40.909 40.32 25.40 35.70 1.89
859 867 3.348119 TGACTTATTTGGCGCCAATACA 58.652 40.909 40.32 27.32 35.70 2.29
860 868 3.951037 TGACTTATTTGGCGCCAATACAT 59.049 39.130 40.32 31.35 35.70 2.29
861 869 5.126779 TGACTTATTTGGCGCCAATACATA 58.873 37.500 40.32 30.30 35.70 2.29
862 870 5.590663 TGACTTATTTGGCGCCAATACATAA 59.409 36.000 40.32 33.77 35.70 1.90
863 871 6.095580 TGACTTATTTGGCGCCAATACATAAA 59.904 34.615 40.32 25.02 35.70 1.40
864 872 6.270064 ACTTATTTGGCGCCAATACATAAAC 58.730 36.000 40.32 3.54 35.70 2.01
865 873 3.512033 TTTGGCGCCAATACATAAACC 57.488 42.857 40.32 3.31 35.70 3.27
866 874 2.130272 TGGCGCCAATACATAAACCA 57.870 45.000 30.74 0.00 0.00 3.67
867 875 2.660572 TGGCGCCAATACATAAACCAT 58.339 42.857 30.74 0.00 0.00 3.55
868 876 3.821748 TGGCGCCAATACATAAACCATA 58.178 40.909 30.74 0.00 0.00 2.74
869 877 4.402829 TGGCGCCAATACATAAACCATAT 58.597 39.130 30.74 0.00 0.00 1.78
870 878 4.217334 TGGCGCCAATACATAAACCATATG 59.783 41.667 30.74 0.00 0.00 1.78
871 879 4.217550 GGCGCCAATACATAAACCATATGT 59.782 41.667 24.80 6.38 40.77 2.29
872 880 5.153513 GCGCCAATACATAAACCATATGTG 58.846 41.667 10.52 0.00 38.47 3.21
902 910 4.006780 TCCACTACGTACTAGACACACA 57.993 45.455 0.00 0.00 0.00 3.72
909 917 3.040795 CGTACTAGACACACACACACAC 58.959 50.000 0.00 0.00 0.00 3.82
910 918 3.487879 CGTACTAGACACACACACACACA 60.488 47.826 0.00 0.00 0.00 3.72
911 919 2.888594 ACTAGACACACACACACACAC 58.111 47.619 0.00 0.00 0.00 3.82
916 926 0.923403 CACACACACACACACGAGAG 59.077 55.000 0.00 0.00 0.00 3.20
934 944 2.884012 AGAGAGAGAGAGTGTGTGTGTG 59.116 50.000 0.00 0.00 0.00 3.82
960 970 5.287992 GTGTTTTCCGTCTACTTTAGATCCG 59.712 44.000 0.00 0.00 37.13 4.18
971 981 0.809636 TTAGATCCGCGGACGTACGA 60.810 55.000 33.75 15.37 37.70 3.43
972 982 1.490693 TAGATCCGCGGACGTACGAC 61.491 60.000 33.75 16.49 37.70 4.34
1041 1059 4.444838 CCGCCGTTGATGGTCCGA 62.445 66.667 0.00 0.00 0.00 4.55
1055 1073 3.770040 CCGACCGTCCATGGAGCA 61.770 66.667 16.81 0.00 0.00 4.26
1057 1075 2.710902 CGACCGTCCATGGAGCAGA 61.711 63.158 16.81 0.00 0.00 4.26
1071 1107 2.572284 CAGACGACGGGGAAGACC 59.428 66.667 0.00 0.00 39.11 3.85
1092 1128 0.835543 AAGTGGTGCAGCTCTCCTCT 60.836 55.000 19.68 5.09 34.65 3.69
1149 1185 2.427245 CCTCATCTTCGACGGCCCT 61.427 63.158 0.00 0.00 0.00 5.19
1150 1186 1.517832 CTCATCTTCGACGGCCCTT 59.482 57.895 0.00 0.00 0.00 3.95
1212 1248 1.583495 CGCTCGTCCACTACCAGACA 61.583 60.000 0.00 0.00 33.08 3.41
1218 1254 1.154016 CCACTACCAGACAGTCGCG 60.154 63.158 0.00 0.00 0.00 5.87
1395 1437 4.832608 GCCTTGTCCTACCCGGCG 62.833 72.222 0.00 0.00 0.00 6.46
1396 1438 4.157120 CCTTGTCCTACCCGGCGG 62.157 72.222 21.46 21.46 0.00 6.13
1453 1495 0.320683 CATGCAGGTCACCGAGTTCA 60.321 55.000 0.00 0.00 0.00 3.18
1494 1536 3.148340 GGTCACGTGGAACCATACC 57.852 57.895 18.81 12.14 0.00 2.73
1736 1778 1.470098 GCTCATCAACCGCATCAAGTT 59.530 47.619 0.00 0.00 0.00 2.66
1756 1798 4.388499 AGTACAAGGCCGCCCACG 62.388 66.667 5.55 0.00 39.67 4.94
1785 1845 4.348857 GGGTACTGCACGACGTTT 57.651 55.556 0.00 0.00 0.00 3.60
2157 2235 1.675641 GACCAGCTGGCGGAACATT 60.676 57.895 33.06 10.64 39.32 2.71
2387 2495 6.623486 TGCAACTGATGAACTGAATTATTGG 58.377 36.000 0.00 0.00 0.00 3.16
2388 2496 6.209192 TGCAACTGATGAACTGAATTATTGGT 59.791 34.615 0.00 0.00 0.00 3.67
2389 2497 7.392953 TGCAACTGATGAACTGAATTATTGGTA 59.607 33.333 0.00 0.00 0.00 3.25
2390 2498 7.698130 GCAACTGATGAACTGAATTATTGGTAC 59.302 37.037 0.00 0.00 0.00 3.34
2413 2521 3.132629 ACGTACGTAGCAGATTGTCAG 57.867 47.619 21.41 0.00 0.00 3.51
2459 2567 3.967326 AGTCCGATCCAGGTGAATAATGA 59.033 43.478 0.00 0.00 0.00 2.57
2461 2569 5.072329 AGTCCGATCCAGGTGAATAATGATT 59.928 40.000 0.00 0.00 0.00 2.57
2462 2570 5.765182 GTCCGATCCAGGTGAATAATGATTT 59.235 40.000 0.00 0.00 0.00 2.17
2463 2571 5.997746 TCCGATCCAGGTGAATAATGATTTC 59.002 40.000 0.00 0.00 0.00 2.17
2464 2572 5.182001 CCGATCCAGGTGAATAATGATTTCC 59.818 44.000 0.00 0.00 0.00 3.13
2467 2575 7.013655 CGATCCAGGTGAATAATGATTTCCTTT 59.986 37.037 0.00 0.00 31.55 3.11
2468 2576 7.408756 TCCAGGTGAATAATGATTTCCTTTG 57.591 36.000 0.00 0.00 31.55 2.77
2469 2577 6.953520 TCCAGGTGAATAATGATTTCCTTTGT 59.046 34.615 0.00 0.00 31.55 2.83
2471 2579 7.546667 CCAGGTGAATAATGATTTCCTTTGTTG 59.453 37.037 0.00 0.00 31.55 3.33
2472 2580 7.063780 CAGGTGAATAATGATTTCCTTTGTTGC 59.936 37.037 0.00 0.00 31.55 4.17
2473 2581 6.034898 GGTGAATAATGATTTCCTTTGTTGCG 59.965 38.462 0.00 0.00 0.00 4.85
2474 2582 5.576384 TGAATAATGATTTCCTTTGTTGCGC 59.424 36.000 0.00 0.00 0.00 6.09
2475 2583 3.665745 AATGATTTCCTTTGTTGCGCT 57.334 38.095 9.73 0.00 0.00 5.92
2476 2584 2.704725 TGATTTCCTTTGTTGCGCTC 57.295 45.000 9.73 2.14 0.00 5.03
2478 2586 2.287547 TGATTTCCTTTGTTGCGCTCAC 60.288 45.455 9.73 6.11 0.00 3.51
2479 2587 1.388547 TTTCCTTTGTTGCGCTCACT 58.611 45.000 9.73 0.00 0.00 3.41
2480 2588 1.388547 TTCCTTTGTTGCGCTCACTT 58.611 45.000 9.73 0.00 0.00 3.16
2481 2589 0.662619 TCCTTTGTTGCGCTCACTTG 59.337 50.000 9.73 1.32 0.00 3.16
2482 2590 0.318107 CCTTTGTTGCGCTCACTTGG 60.318 55.000 9.73 6.44 0.00 3.61
2483 2591 0.381801 CTTTGTTGCGCTCACTTGGT 59.618 50.000 9.73 0.00 0.00 3.67
2484 2592 0.814457 TTTGTTGCGCTCACTTGGTT 59.186 45.000 9.73 0.00 0.00 3.67
2485 2593 0.380378 TTGTTGCGCTCACTTGGTTC 59.620 50.000 9.73 0.00 0.00 3.62
2486 2594 1.082756 GTTGCGCTCACTTGGTTCG 60.083 57.895 9.73 0.00 0.00 3.95
2487 2595 1.227409 TTGCGCTCACTTGGTTCGA 60.227 52.632 9.73 0.00 0.00 3.71
2488 2596 0.602638 TTGCGCTCACTTGGTTCGAT 60.603 50.000 9.73 0.00 0.00 3.59
2489 2597 1.014044 TGCGCTCACTTGGTTCGATC 61.014 55.000 9.73 0.00 0.00 3.69
2490 2598 1.014044 GCGCTCACTTGGTTCGATCA 61.014 55.000 0.00 0.00 0.00 2.92
2491 2599 1.428448 CGCTCACTTGGTTCGATCAA 58.572 50.000 0.00 0.00 0.00 2.57
2492 2600 1.391485 CGCTCACTTGGTTCGATCAAG 59.609 52.381 20.52 20.52 45.03 3.02
2493 2601 2.688507 GCTCACTTGGTTCGATCAAGA 58.311 47.619 25.80 11.18 42.94 3.02
2494 2602 3.265791 GCTCACTTGGTTCGATCAAGAT 58.734 45.455 25.80 13.34 42.94 2.40
2495 2603 3.063180 GCTCACTTGGTTCGATCAAGATG 59.937 47.826 25.80 20.41 42.94 2.90
2496 2604 4.498241 CTCACTTGGTTCGATCAAGATGA 58.502 43.478 25.80 22.27 42.94 2.92
2497 2605 4.893608 TCACTTGGTTCGATCAAGATGAA 58.106 39.130 25.80 11.61 42.94 2.57
2498 2606 5.491070 TCACTTGGTTCGATCAAGATGAAT 58.509 37.500 25.80 8.73 42.94 2.57
2499 2607 6.639563 TCACTTGGTTCGATCAAGATGAATA 58.360 36.000 25.80 9.64 42.94 1.75
2500 2608 7.102993 TCACTTGGTTCGATCAAGATGAATAA 58.897 34.615 25.80 9.41 42.94 1.40
2501 2609 7.278646 TCACTTGGTTCGATCAAGATGAATAAG 59.721 37.037 25.80 6.64 42.94 1.73
2502 2610 6.540189 ACTTGGTTCGATCAAGATGAATAAGG 59.460 38.462 25.80 6.21 42.94 2.69
2503 2611 5.989477 TGGTTCGATCAAGATGAATAAGGT 58.011 37.500 0.00 0.00 0.00 3.50
2504 2612 5.817296 TGGTTCGATCAAGATGAATAAGGTG 59.183 40.000 0.00 0.00 0.00 4.00
2505 2613 6.049149 GGTTCGATCAAGATGAATAAGGTGA 58.951 40.000 0.00 0.00 0.00 4.02
2506 2614 6.538742 GGTTCGATCAAGATGAATAAGGTGAA 59.461 38.462 0.00 0.00 0.00 3.18
2507 2615 7.065803 GGTTCGATCAAGATGAATAAGGTGAAA 59.934 37.037 0.00 0.00 0.00 2.69
2508 2616 8.450964 GTTCGATCAAGATGAATAAGGTGAAAA 58.549 33.333 0.00 0.00 0.00 2.29
2509 2617 8.737168 TCGATCAAGATGAATAAGGTGAAAAT 57.263 30.769 0.00 0.00 0.00 1.82
2510 2618 8.830580 TCGATCAAGATGAATAAGGTGAAAATC 58.169 33.333 0.00 0.00 0.00 2.17
2511 2619 8.834465 CGATCAAGATGAATAAGGTGAAAATCT 58.166 33.333 0.00 0.00 0.00 2.40
2514 2622 9.396022 TCAAGATGAATAAGGTGAAAATCTACC 57.604 33.333 0.00 0.00 37.23 3.18
2516 2624 9.620259 AAGATGAATAAGGTGAAAATCTACCTC 57.380 33.333 0.00 0.00 46.28 3.85
2517 2625 8.772250 AGATGAATAAGGTGAAAATCTACCTCA 58.228 33.333 0.00 0.00 46.28 3.86
2518 2626 9.566432 GATGAATAAGGTGAAAATCTACCTCAT 57.434 33.333 0.00 0.00 46.28 2.90
2519 2627 8.737168 TGAATAAGGTGAAAATCTACCTCATG 57.263 34.615 0.00 0.00 46.28 3.07
2548 2656 5.307196 GGGTGCCCTAGTCTATTCTATGAAA 59.693 44.000 0.00 0.00 0.00 2.69
2591 2702 4.418392 GACCTCATTTGTGAATCATGCAC 58.582 43.478 0.00 0.00 36.81 4.57
2614 2725 9.525007 GCACCGATGTATATTTAGAATTTTACG 57.475 33.333 0.00 0.00 0.00 3.18
2635 2751 9.893634 TTTACGATATGAATTTTCAGGGAAGTA 57.106 29.630 0.00 0.00 41.08 2.24
2639 2755 9.669353 CGATATGAATTTTCAGGGAAGTATTTG 57.331 33.333 0.00 0.00 41.08 2.32
2646 2762 7.654022 TTTTCAGGGAAGTATTTGAAGTGTT 57.346 32.000 0.00 0.00 31.85 3.32
2647 2763 6.633500 TTCAGGGAAGTATTTGAAGTGTTG 57.367 37.500 0.00 0.00 0.00 3.33
2662 2778 6.024664 TGAAGTGTTGACGTGTAAAATGTTG 58.975 36.000 0.00 0.00 0.00 3.33
2663 2779 5.554822 AGTGTTGACGTGTAAAATGTTGT 57.445 34.783 0.00 0.00 0.00 3.32
2670 2786 7.956508 TGACGTGTAAAATGTTGTTTTGTAG 57.043 32.000 0.00 0.00 0.00 2.74
2671 2787 7.528307 TGACGTGTAAAATGTTGTTTTGTAGT 58.472 30.769 0.00 0.00 0.00 2.73
2672 2788 8.021973 TGACGTGTAAAATGTTGTTTTGTAGTT 58.978 29.630 0.00 0.00 0.00 2.24
2673 2789 8.384526 ACGTGTAAAATGTTGTTTTGTAGTTC 57.615 30.769 0.00 0.00 0.00 3.01
2674 2790 8.021973 ACGTGTAAAATGTTGTTTTGTAGTTCA 58.978 29.630 0.00 0.00 0.00 3.18
2675 2791 8.851416 CGTGTAAAATGTTGTTTTGTAGTTCAA 58.149 29.630 0.00 0.00 0.00 2.69
2700 2816 8.786826 AAAAATATGATTGTAGAACTCCGTGA 57.213 30.769 0.00 0.00 0.00 4.35
2701 2817 8.425577 AAAATATGATTGTAGAACTCCGTGAG 57.574 34.615 0.03 0.03 35.52 3.51
2702 2818 6.961360 ATATGATTGTAGAACTCCGTGAGA 57.039 37.500 7.76 0.00 33.32 3.27
2703 2819 5.661056 ATGATTGTAGAACTCCGTGAGAA 57.339 39.130 7.76 0.00 33.32 2.87
2704 2820 5.462530 TGATTGTAGAACTCCGTGAGAAA 57.537 39.130 7.76 0.00 33.32 2.52
2705 2821 5.849510 TGATTGTAGAACTCCGTGAGAAAA 58.150 37.500 7.76 0.00 33.32 2.29
2706 2822 5.694910 TGATTGTAGAACTCCGTGAGAAAAC 59.305 40.000 7.76 2.37 33.32 2.43
2707 2823 3.986277 TGTAGAACTCCGTGAGAAAACC 58.014 45.455 7.76 0.00 33.32 3.27
2708 2824 3.385433 TGTAGAACTCCGTGAGAAAACCA 59.615 43.478 7.76 0.00 33.32 3.67
2709 2825 3.771577 AGAACTCCGTGAGAAAACCAT 57.228 42.857 7.76 0.00 33.32 3.55
2710 2826 3.665190 AGAACTCCGTGAGAAAACCATC 58.335 45.455 7.76 0.00 33.32 3.51
2711 2827 3.071023 AGAACTCCGTGAGAAAACCATCA 59.929 43.478 7.76 0.00 33.32 3.07
2712 2828 3.485463 ACTCCGTGAGAAAACCATCAA 57.515 42.857 7.76 0.00 33.32 2.57
2713 2829 3.815809 ACTCCGTGAGAAAACCATCAAA 58.184 40.909 7.76 0.00 33.32 2.69
2714 2830 3.815401 ACTCCGTGAGAAAACCATCAAAG 59.185 43.478 7.76 0.00 33.32 2.77
2715 2831 4.065088 CTCCGTGAGAAAACCATCAAAGA 58.935 43.478 0.00 0.00 0.00 2.52
2716 2832 4.651778 TCCGTGAGAAAACCATCAAAGAT 58.348 39.130 0.00 0.00 0.00 2.40
2717 2833 5.070001 TCCGTGAGAAAACCATCAAAGATT 58.930 37.500 0.00 0.00 0.00 2.40
2718 2834 5.048782 TCCGTGAGAAAACCATCAAAGATTG 60.049 40.000 0.00 0.00 0.00 2.67
2719 2835 5.278463 CCGTGAGAAAACCATCAAAGATTGT 60.278 40.000 0.00 0.00 0.00 2.71
2761 2877 3.087031 CTCCATCACCACTCATTTTGCT 58.913 45.455 0.00 0.00 0.00 3.91
3061 3182 3.437049 GCAACTCCAGTACTTTGACCATC 59.563 47.826 8.83 0.00 0.00 3.51
3065 3186 5.880901 ACTCCAGTACTTTGACCATCAAAT 58.119 37.500 4.55 0.00 44.37 2.32
3155 3276 7.882791 TCATGGCAAGTCTAGTTTCTTAATTCA 59.117 33.333 0.00 0.00 0.00 2.57
3240 3361 6.246420 AGCAACTTCAGTGTAAACATCATC 57.754 37.500 0.00 0.00 0.00 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 6.113411 GCCACATACATTTGTAGTCTAACCT 58.887 40.000 0.00 0.00 33.52 3.50
15 17 6.617879 CATCTATGGATGCCACATACATTTG 58.382 40.000 10.41 5.21 42.12 2.32
39 41 3.887110 TGCAATGAGAATGACATCCATCC 59.113 43.478 0.00 0.00 33.53 3.51
40 42 4.579340 ACTGCAATGAGAATGACATCCATC 59.421 41.667 0.00 0.00 33.53 3.51
41 43 4.533815 ACTGCAATGAGAATGACATCCAT 58.466 39.130 0.00 0.00 36.99 3.41
42 44 3.959293 ACTGCAATGAGAATGACATCCA 58.041 40.909 0.00 0.00 0.00 3.41
43 45 4.877823 TGTACTGCAATGAGAATGACATCC 59.122 41.667 0.00 0.00 0.00 3.51
103 109 5.294356 TGAGTAGCGACACTTAACAAACAT 58.706 37.500 0.00 0.00 0.00 2.71
105 111 4.376109 GCTGAGTAGCGACACTTAACAAAC 60.376 45.833 0.00 0.00 40.67 2.93
241 248 7.362056 GCGGATTCAGGCATATTGTTGTAATAT 60.362 37.037 0.00 0.00 0.00 1.28
341 348 5.590259 GCTTTTGATGATAGGCTTAGGTGAA 59.410 40.000 0.00 0.00 0.00 3.18
519 526 0.320697 GGAGGTAGTTGTCTGGCGTT 59.679 55.000 0.00 0.00 0.00 4.84
790 798 0.625849 ACGGGGCCATCTCTCAAAAT 59.374 50.000 4.39 0.00 0.00 1.82
791 799 0.035439 GACGGGGCCATCTCTCAAAA 60.035 55.000 4.39 0.00 0.00 2.44
792 800 1.198094 TGACGGGGCCATCTCTCAAA 61.198 55.000 4.39 0.00 0.00 2.69
793 801 1.198094 TTGACGGGGCCATCTCTCAA 61.198 55.000 4.39 0.51 0.00 3.02
794 802 0.982852 ATTGACGGGGCCATCTCTCA 60.983 55.000 4.39 0.00 0.00 3.27
795 803 0.181350 AATTGACGGGGCCATCTCTC 59.819 55.000 4.39 0.00 0.00 3.20
796 804 1.507140 TAATTGACGGGGCCATCTCT 58.493 50.000 4.39 0.00 0.00 3.10
797 805 2.341846 TTAATTGACGGGGCCATCTC 57.658 50.000 4.39 0.00 0.00 2.75
798 806 2.958355 CAATTAATTGACGGGGCCATCT 59.042 45.455 21.35 0.00 40.14 2.90
799 807 2.693074 ACAATTAATTGACGGGGCCATC 59.307 45.455 30.18 2.42 40.14 3.51
800 808 2.430332 CACAATTAATTGACGGGGCCAT 59.570 45.455 30.18 5.85 40.14 4.40
801 809 1.821753 CACAATTAATTGACGGGGCCA 59.178 47.619 30.18 0.00 40.14 5.36
802 810 2.096248 TCACAATTAATTGACGGGGCC 58.904 47.619 30.18 0.00 40.14 5.80
803 811 3.013921 TCTCACAATTAATTGACGGGGC 58.986 45.455 30.18 0.00 40.14 5.80
804 812 4.513442 TCTCTCACAATTAATTGACGGGG 58.487 43.478 30.18 19.41 40.14 5.73
805 813 5.008019 CCATCTCTCACAATTAATTGACGGG 59.992 44.000 30.18 20.82 40.14 5.28
806 814 5.504665 GCCATCTCTCACAATTAATTGACGG 60.505 44.000 30.18 19.39 40.14 4.79
807 815 5.504665 GGCCATCTCTCACAATTAATTGACG 60.505 44.000 30.18 20.79 40.14 4.35
808 816 5.357878 TGGCCATCTCTCACAATTAATTGAC 59.642 40.000 30.18 4.67 40.14 3.18
809 817 5.357878 GTGGCCATCTCTCACAATTAATTGA 59.642 40.000 30.18 11.74 40.14 2.57
810 818 5.125900 TGTGGCCATCTCTCACAATTAATTG 59.874 40.000 23.60 23.60 43.26 2.32
811 819 5.263599 TGTGGCCATCTCTCACAATTAATT 58.736 37.500 9.72 0.00 38.30 1.40
812 820 4.858850 TGTGGCCATCTCTCACAATTAAT 58.141 39.130 9.72 0.00 38.30 1.40
813 821 4.299586 TGTGGCCATCTCTCACAATTAA 57.700 40.909 9.72 0.00 38.30 1.40
814 822 3.998913 TGTGGCCATCTCTCACAATTA 57.001 42.857 9.72 0.00 38.30 1.40
815 823 2.885135 TGTGGCCATCTCTCACAATT 57.115 45.000 9.72 0.00 38.30 2.32
816 824 3.377253 AATGTGGCCATCTCTCACAAT 57.623 42.857 9.72 0.00 43.38 2.71
822 830 3.446442 AGTCAAAATGTGGCCATCTCT 57.554 42.857 9.72 0.00 29.16 3.10
850 858 5.698832 CCACATATGGTTTATGTATTGGCG 58.301 41.667 7.80 0.00 41.64 5.69
865 873 0.250424 TGGATGCCTCGCCACATATG 60.250 55.000 0.00 0.00 0.00 1.78
866 874 2.144952 TGGATGCCTCGCCACATAT 58.855 52.632 0.00 0.00 0.00 1.78
867 875 3.640761 TGGATGCCTCGCCACATA 58.359 55.556 0.00 0.00 0.00 2.29
871 879 2.900273 GTAGTGGATGCCTCGCCA 59.100 61.111 0.00 0.00 0.00 5.69
872 880 1.731433 TACGTAGTGGATGCCTCGCC 61.731 60.000 0.00 0.00 45.73 5.54
873 881 0.594284 GTACGTAGTGGATGCCTCGC 60.594 60.000 0.00 0.00 45.73 5.03
874 882 1.022735 AGTACGTAGTGGATGCCTCG 58.977 55.000 1.10 0.00 45.73 4.63
875 883 3.250521 GTCTAGTACGTAGTGGATGCCTC 59.749 52.174 18.07 3.19 45.73 4.70
876 884 3.212685 GTCTAGTACGTAGTGGATGCCT 58.787 50.000 18.07 1.93 45.73 4.75
877 885 2.947652 TGTCTAGTACGTAGTGGATGCC 59.052 50.000 18.07 7.62 45.73 4.40
878 886 3.376234 TGTGTCTAGTACGTAGTGGATGC 59.624 47.826 18.07 14.04 45.73 3.91
902 910 1.876799 CTCTCTCTCTCGTGTGTGTGT 59.123 52.381 0.00 0.00 0.00 3.72
909 917 2.159430 CACACACTCTCTCTCTCTCGTG 59.841 54.545 0.00 0.00 0.00 4.35
910 918 2.224426 ACACACACTCTCTCTCTCTCGT 60.224 50.000 0.00 0.00 0.00 4.18
911 919 2.159430 CACACACACTCTCTCTCTCTCG 59.841 54.545 0.00 0.00 0.00 4.04
916 926 2.099921 ACACACACACACACTCTCTCTC 59.900 50.000 0.00 0.00 0.00 3.20
934 944 6.090493 GGATCTAAAGTAGACGGAAAACACAC 59.910 42.308 0.00 0.00 37.69 3.82
960 970 3.367051 TAGTGCGTCGTACGTCCGC 62.367 63.158 32.33 32.33 44.73 5.54
1030 1048 1.261938 ATGGACGGTCGGACCATCAA 61.262 55.000 23.11 14.05 39.83 2.57
1041 1059 2.982130 GTCTGCTCCATGGACGGT 59.018 61.111 11.44 0.00 0.00 4.83
1071 1107 1.673665 GGAGAGCTGCACCACTTGG 60.674 63.158 1.02 0.00 42.17 3.61
1092 1128 1.541310 CCACGTAGCTCCTGTCCCAA 61.541 60.000 0.00 0.00 0.00 4.12
1192 1228 1.303074 TCTGGTAGTGGACGAGCGT 60.303 57.895 0.00 0.00 34.05 5.07
1271 1313 4.320456 CACCCTCGCCTGTGCACT 62.320 66.667 19.41 0.00 37.32 4.40
1494 1536 2.028190 CCGTCGCCATCAGCTAGG 59.972 66.667 0.00 0.00 40.39 3.02
1736 1778 3.766691 GGGCGGCCTTGTACTCGA 61.767 66.667 22.87 0.00 0.00 4.04
1759 1801 2.585247 GCAGTACCCGCCGTCATC 60.585 66.667 0.00 0.00 0.00 2.92
1760 1802 3.387091 TGCAGTACCCGCCGTCAT 61.387 61.111 2.66 0.00 0.00 3.06
1761 1803 4.367023 GTGCAGTACCCGCCGTCA 62.367 66.667 2.66 0.00 0.00 4.35
1766 1808 4.712425 ACGTCGTGCAGTACCCGC 62.712 66.667 0.00 0.00 0.00 6.13
1827 1887 2.658593 GGGTCGTCGCCGATGATG 60.659 66.667 12.76 0.00 46.30 3.07
2235 2316 1.817099 GGAGAGGAACGCCATGCAG 60.817 63.158 0.00 0.00 38.35 4.41
2398 2506 1.002366 GCACCTGACAATCTGCTACG 58.998 55.000 0.00 0.00 0.00 3.51
2429 2537 3.056107 CACCTGGATCGGACTAACTCAAA 60.056 47.826 0.00 0.00 0.00 2.69
2459 2567 1.956477 AGTGAGCGCAACAAAGGAAAT 59.044 42.857 11.47 0.00 0.00 2.17
2461 2569 1.065401 CAAGTGAGCGCAACAAAGGAA 59.935 47.619 11.47 0.00 0.00 3.36
2462 2570 0.662619 CAAGTGAGCGCAACAAAGGA 59.337 50.000 11.47 0.00 0.00 3.36
2463 2571 0.318107 CCAAGTGAGCGCAACAAAGG 60.318 55.000 11.47 7.17 0.00 3.11
2464 2572 0.381801 ACCAAGTGAGCGCAACAAAG 59.618 50.000 11.47 2.70 0.00 2.77
2467 2575 1.771073 CGAACCAAGTGAGCGCAACA 61.771 55.000 11.47 6.70 0.00 3.33
2468 2576 1.082756 CGAACCAAGTGAGCGCAAC 60.083 57.895 11.47 7.80 0.00 4.17
2469 2577 0.602638 ATCGAACCAAGTGAGCGCAA 60.603 50.000 11.47 0.00 0.00 4.85
2471 2579 1.014044 TGATCGAACCAAGTGAGCGC 61.014 55.000 0.00 0.00 0.00 5.92
2472 2580 1.391485 CTTGATCGAACCAAGTGAGCG 59.609 52.381 17.67 0.00 36.99 5.03
2473 2581 2.688507 TCTTGATCGAACCAAGTGAGC 58.311 47.619 22.20 0.00 41.18 4.26
2474 2582 4.498241 TCATCTTGATCGAACCAAGTGAG 58.502 43.478 22.20 15.84 41.18 3.51
2475 2583 4.535526 TCATCTTGATCGAACCAAGTGA 57.464 40.909 22.20 20.65 41.18 3.41
2476 2584 5.808042 ATTCATCTTGATCGAACCAAGTG 57.192 39.130 22.20 19.41 41.18 3.16
2478 2586 6.540189 ACCTTATTCATCTTGATCGAACCAAG 59.460 38.462 19.08 19.08 41.63 3.61
2479 2587 6.316140 CACCTTATTCATCTTGATCGAACCAA 59.684 38.462 0.00 0.00 0.00 3.67
2480 2588 5.817296 CACCTTATTCATCTTGATCGAACCA 59.183 40.000 0.00 0.00 0.00 3.67
2481 2589 6.049149 TCACCTTATTCATCTTGATCGAACC 58.951 40.000 0.00 0.00 0.00 3.62
2482 2590 7.539712 TTCACCTTATTCATCTTGATCGAAC 57.460 36.000 0.00 0.00 0.00 3.95
2483 2591 8.560355 TTTTCACCTTATTCATCTTGATCGAA 57.440 30.769 0.00 0.00 0.00 3.71
2484 2592 8.737168 ATTTTCACCTTATTCATCTTGATCGA 57.263 30.769 0.00 0.00 0.00 3.59
2485 2593 8.834465 AGATTTTCACCTTATTCATCTTGATCG 58.166 33.333 0.00 0.00 0.00 3.69
2488 2596 9.396022 GGTAGATTTTCACCTTATTCATCTTGA 57.604 33.333 0.00 0.00 0.00 3.02
2489 2597 9.401058 AGGTAGATTTTCACCTTATTCATCTTG 57.599 33.333 0.00 0.00 42.68 3.02
2490 2598 9.620259 GAGGTAGATTTTCACCTTATTCATCTT 57.380 33.333 0.00 0.00 45.32 2.40
2491 2599 8.772250 TGAGGTAGATTTTCACCTTATTCATCT 58.228 33.333 0.00 0.00 45.32 2.90
2492 2600 8.964476 TGAGGTAGATTTTCACCTTATTCATC 57.036 34.615 0.00 0.00 45.32 2.92
2493 2601 9.347240 CATGAGGTAGATTTTCACCTTATTCAT 57.653 33.333 0.00 0.00 45.32 2.57
2494 2602 8.328758 ACATGAGGTAGATTTTCACCTTATTCA 58.671 33.333 0.00 0.00 45.32 2.57
2495 2603 8.616076 CACATGAGGTAGATTTTCACCTTATTC 58.384 37.037 0.00 0.00 45.32 1.75
2496 2604 7.557719 CCACATGAGGTAGATTTTCACCTTATT 59.442 37.037 0.00 0.00 45.32 1.40
2497 2605 7.056635 CCACATGAGGTAGATTTTCACCTTAT 58.943 38.462 0.00 0.00 45.32 1.73
2498 2606 6.214615 TCCACATGAGGTAGATTTTCACCTTA 59.785 38.462 9.16 0.00 45.32 2.69
2499 2607 5.014123 TCCACATGAGGTAGATTTTCACCTT 59.986 40.000 9.16 0.00 45.32 3.50
2501 2609 4.843728 TCCACATGAGGTAGATTTTCACC 58.156 43.478 9.16 0.00 34.86 4.02
2561 2669 9.872684 ATGATTCACAAATGAGGTCCTATTATT 57.127 29.630 0.00 0.00 35.83 1.40
2574 2685 3.490800 TCGGTGCATGATTCACAAATG 57.509 42.857 0.00 0.00 36.22 2.32
2613 2724 9.669353 CAAATACTTCCCTGAAAATTCATATCG 57.331 33.333 0.00 0.00 36.46 2.92
2618 2729 8.359642 CACTTCAAATACTTCCCTGAAAATTCA 58.640 33.333 0.00 0.00 35.57 2.57
2620 2731 8.250143 ACACTTCAAATACTTCCCTGAAAATT 57.750 30.769 0.00 0.00 0.00 1.82
2623 2734 6.831353 TCAACACTTCAAATACTTCCCTGAAA 59.169 34.615 0.00 0.00 0.00 2.69
2624 2735 6.262273 GTCAACACTTCAAATACTTCCCTGAA 59.738 38.462 0.00 0.00 0.00 3.02
2626 2737 5.334105 CGTCAACACTTCAAATACTTCCCTG 60.334 44.000 0.00 0.00 0.00 4.45
2627 2738 4.755123 CGTCAACACTTCAAATACTTCCCT 59.245 41.667 0.00 0.00 0.00 4.20
2628 2739 4.514066 ACGTCAACACTTCAAATACTTCCC 59.486 41.667 0.00 0.00 0.00 3.97
2629 2740 5.007332 ACACGTCAACACTTCAAATACTTCC 59.993 40.000 0.00 0.00 0.00 3.46
2635 2751 7.254852 ACATTTTACACGTCAACACTTCAAAT 58.745 30.769 0.00 0.00 0.00 2.32
2639 2755 6.025280 ACAACATTTTACACGTCAACACTTC 58.975 36.000 0.00 0.00 0.00 3.01
2646 2762 7.528307 ACTACAAAACAACATTTTACACGTCA 58.472 30.769 0.00 0.00 0.00 4.35
2647 2763 7.958112 ACTACAAAACAACATTTTACACGTC 57.042 32.000 0.00 0.00 0.00 4.34
2675 2791 8.786826 TCACGGAGTTCTACAATCATATTTTT 57.213 30.769 0.00 0.00 41.61 1.94
2676 2792 8.258007 TCTCACGGAGTTCTACAATCATATTTT 58.742 33.333 0.00 0.00 41.61 1.82
2677 2793 7.782049 TCTCACGGAGTTCTACAATCATATTT 58.218 34.615 0.00 0.00 41.61 1.40
2678 2794 7.348080 TCTCACGGAGTTCTACAATCATATT 57.652 36.000 0.00 0.00 41.61 1.28
2679 2795 6.961360 TCTCACGGAGTTCTACAATCATAT 57.039 37.500 0.00 0.00 41.61 1.78
2680 2796 6.769134 TTCTCACGGAGTTCTACAATCATA 57.231 37.500 0.00 0.00 41.61 2.15
2681 2797 5.661056 TTCTCACGGAGTTCTACAATCAT 57.339 39.130 0.00 0.00 41.61 2.45
2682 2798 5.462530 TTTCTCACGGAGTTCTACAATCA 57.537 39.130 0.00 0.00 41.61 2.57
2683 2799 5.120363 GGTTTTCTCACGGAGTTCTACAATC 59.880 44.000 0.00 0.00 41.61 2.67
2684 2800 4.995487 GGTTTTCTCACGGAGTTCTACAAT 59.005 41.667 0.00 0.00 41.61 2.71
2685 2801 4.141892 TGGTTTTCTCACGGAGTTCTACAA 60.142 41.667 0.00 0.00 41.61 2.41
2686 2802 3.385433 TGGTTTTCTCACGGAGTTCTACA 59.615 43.478 0.00 0.00 41.61 2.74
2687 2803 3.986277 TGGTTTTCTCACGGAGTTCTAC 58.014 45.455 0.00 0.00 41.61 2.59
2688 2804 4.282449 TGATGGTTTTCTCACGGAGTTCTA 59.718 41.667 0.00 0.00 41.61 2.10
2689 2805 3.071023 TGATGGTTTTCTCACGGAGTTCT 59.929 43.478 0.00 0.00 41.61 3.01
2690 2806 3.399330 TGATGGTTTTCTCACGGAGTTC 58.601 45.455 0.00 0.00 41.61 3.01
2691 2807 3.485463 TGATGGTTTTCTCACGGAGTT 57.515 42.857 0.00 0.00 41.61 3.01
2693 2809 4.065088 TCTTTGATGGTTTTCTCACGGAG 58.935 43.478 0.00 0.00 0.00 4.63
2694 2810 4.079980 TCTTTGATGGTTTTCTCACGGA 57.920 40.909 0.00 0.00 0.00 4.69
2695 2811 5.156355 CAATCTTTGATGGTTTTCTCACGG 58.844 41.667 0.00 0.00 0.00 4.94
2696 2812 5.762045 ACAATCTTTGATGGTTTTCTCACG 58.238 37.500 0.00 0.00 0.00 4.35
2697 2813 8.330302 CAAAACAATCTTTGATGGTTTTCTCAC 58.670 33.333 17.81 0.00 39.02 3.51
2698 2814 7.011295 GCAAAACAATCTTTGATGGTTTTCTCA 59.989 33.333 17.81 0.00 39.02 3.27
2699 2815 7.011295 TGCAAAACAATCTTTGATGGTTTTCTC 59.989 33.333 17.81 14.13 39.02 2.87
2700 2816 6.822676 TGCAAAACAATCTTTGATGGTTTTCT 59.177 30.769 17.81 2.29 39.02 2.52
2701 2817 6.906678 GTGCAAAACAATCTTTGATGGTTTTC 59.093 34.615 17.81 14.16 39.02 2.29
2702 2818 6.373774 TGTGCAAAACAATCTTTGATGGTTTT 59.626 30.769 15.91 15.91 40.99 2.43
2703 2819 5.879223 TGTGCAAAACAATCTTTGATGGTTT 59.121 32.000 7.11 7.11 38.35 3.27
2704 2820 5.426504 TGTGCAAAACAATCTTTGATGGTT 58.573 33.333 0.00 0.00 38.35 3.67
2705 2821 5.021033 TGTGCAAAACAATCTTTGATGGT 57.979 34.783 0.00 0.00 38.35 3.55
2706 2822 5.164031 CGATGTGCAAAACAATCTTTGATGG 60.164 40.000 0.00 0.00 43.61 3.51
2707 2823 5.403166 ACGATGTGCAAAACAATCTTTGATG 59.597 36.000 0.00 0.00 43.61 3.07
2708 2824 5.531634 ACGATGTGCAAAACAATCTTTGAT 58.468 33.333 0.00 0.00 43.61 2.57
2709 2825 4.930963 ACGATGTGCAAAACAATCTTTGA 58.069 34.783 0.00 0.00 43.61 2.69
2710 2826 4.148696 GGACGATGTGCAAAACAATCTTTG 59.851 41.667 0.00 0.00 43.61 2.77
2711 2827 4.202101 TGGACGATGTGCAAAACAATCTTT 60.202 37.500 0.00 0.00 43.61 2.52
2712 2828 3.317711 TGGACGATGTGCAAAACAATCTT 59.682 39.130 0.00 0.00 43.61 2.40
2713 2829 2.884012 TGGACGATGTGCAAAACAATCT 59.116 40.909 0.00 0.00 43.61 2.40
2714 2830 2.979813 GTGGACGATGTGCAAAACAATC 59.020 45.455 0.00 0.00 43.61 2.67
2715 2831 2.360483 TGTGGACGATGTGCAAAACAAT 59.640 40.909 0.00 0.00 43.61 2.71
2716 2832 1.745653 TGTGGACGATGTGCAAAACAA 59.254 42.857 0.00 0.00 43.61 2.83
2717 2833 1.064803 GTGTGGACGATGTGCAAAACA 59.935 47.619 0.00 0.00 44.79 2.83
2718 2834 1.753956 GTGTGGACGATGTGCAAAAC 58.246 50.000 0.00 0.00 35.32 2.43
2803 2920 8.871629 TTAGGAGATACAACATTTTTAAGCCA 57.128 30.769 0.00 0.00 0.00 4.75
3217 3338 5.106948 CGATGATGTTTACACTGAAGTTGCT 60.107 40.000 0.00 0.00 0.00 3.91
3240 3361 5.798434 CCATGTCTATTGCATATGAATTGCG 59.202 40.000 6.97 0.00 43.10 4.85
3290 3413 6.720112 AGATCCCATGTTGATATGTTTTGG 57.280 37.500 0.00 0.00 0.00 3.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.