AutoCloner

Multiple sequence alignment - TraesCS2B01G000200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2B01G000200	chr2B	100.000	4260	0	0	1	4260	18907	23166	0.000000e+00	7867.0
1	TraesCS2B01G000200	chr2B	94.823	2569	82	15	1	2556	452082	449552	0.000000e+00	3960.0
2	TraesCS2B01G000200	chr2B	91.537	1548	120	8	1652	3193	119882	118340	0.000000e+00	2122.0
3	TraesCS2B01G000200	chr2B	95.134	1233	44	7	2557	3777	448926	447698	0.000000e+00	1930.0
4	TraesCS2B01G000200	chr2B	94.654	1141	50	8	523	1660	121672	120540	0.000000e+00	1759.0
5	TraesCS2B01G000200	chr2B	96.901	484	15	0	3777	4260	112550	112067	0.000000e+00	811.0
6	TraesCS2B01G000200	chr2B	93.827	486	30	0	1	486	122158	121673	0.000000e+00	732.0
7	TraesCS2B01G000200	chr2B	92.549	255	18	1	4007	4260	427411666	427411920	8.710000e-97	364.0
8	TraesCS2B01G000200	chr2B	95.694	209	9	0	3797	4005	447637	447429	1.900000e-88	337.0
9	TraesCS2B01G000200	chr2B	73.628	656	155	16	1036	1680	448882	448234	1.980000e-58	237.0
10	TraesCS2B01G000200	chr2B	87.019	208	15	4	3500	3696	113746	113540	1.540000e-54	224.0
11	TraesCS2B01G000200	chr2B	92.683	123	5	1	3342	3464	113864	113746	1.570000e-39	174.0
12	TraesCS2B01G000200	chr2B	98.734	79	1	0	3699	3777	112657	112579	1.600000e-29	141.0
13	TraesCS2B01G000200	chr2B	91.837	98	5	1	3911	4005	40286	40383	2.670000e-27	134.0
14	TraesCS2B01G000200	chr2D	92.731	3178	196	19	600	3772	1961708	1958561	0.000000e+00	4556.0
15	TraesCS2B01G000200	chr2D	85.399	363	44	8	213	572	27620345	27620701	6.730000e-98	368.0
16	TraesCS2B01G000200	chr2D	92.941	255	13	2	4007	4260	558338873	558338623	2.420000e-97	366.0
17	TraesCS2B01G000200	chr2D	84.071	226	11	8	3777	3977	1958524	1958299	1.210000e-45	195.0
18	TraesCS2B01G000200	chr2D	98.571	70	0	1	1	70	1961873	1961805	5.780000e-24	122.0
19	TraesCS2B01G000200	chr2D	94.915	59	3	0	135	193	1961764	1961706	4.540000e-15	93.5
20	TraesCS2B01G000200	chr2A	92.809	2962	172	18	835	3777	1860639	1857700	0.000000e+00	4252.0
21	TraesCS2B01G000200	chr2A	97.642	212	5	0	3777	3988	1857671	1857460	8.710000e-97	364.0
22	TraesCS2B01G000200	chr2A	92.511	227	12	3	572	793	1862349	1862123	1.910000e-83	320.0
23	TraesCS2B01G000200	chr2A	88.318	214	22	3	1	213	1862544	1862333	1.970000e-63	254.0
24	TraesCS2B01G000200	chr4D	90.223	358	31	2	213	570	311187965	311188318	8.340000e-127	464.0
25	TraesCS2B01G000200	chr3B	89.802	353	29	6	213	562	820946016	820946364	3.020000e-121	446.0
26	TraesCS2B01G000200	chr3B	86.555	357	44	3	213	568	790644426	790644779	1.440000e-104	390.0
27	TraesCS2B01G000200	chr4B	88.286	350	35	4	213	560	116138746	116139091	8.520000e-112	414.0
28	TraesCS2B01G000200	chr6B	87.430	358	38	6	218	571	61204	60850	5.130000e-109	405.0
29	TraesCS2B01G000200	chr7B	93.725	255	15	1	4007	4260	376366645	376366391	8.640000e-102	381.0
30	TraesCS2B01G000200	chr7B	93.701	254	14	2	4008	4260	739267578	739267830	3.110000e-101	379.0
31	TraesCS2B01G000200	chr7B	73.894	452	106	10	1033	1477	693923459	693923905	2.040000e-38	171.0
32	TraesCS2B01G000200	chrUn	93.333	255	16	1	4007	4260	395552289	395552543	4.020000e-100	375.0
33	TraesCS2B01G000200	chrUn	93.333	255	16	1	4007	4260	447026916	447027170	4.020000e-100	375.0
34	TraesCS2B01G000200	chr3D	93.333	255	16	1	4007	4260	28752979	28752725	4.020000e-100	375.0
35	TraesCS2B01G000200	chr1B	85.714	364	42	8	213	573	13271161	13271517	4.020000e-100	375.0
36	TraesCS2B01G000200	chr5B	92.549	255	18	1	4007	4260	251868334	251868080	8.710000e-97	364.0
37	TraesCS2B01G000200	chr7D	74.946	463	107	7	2587	3044	982265	981807	2.010000e-48	204.0
38	TraesCS2B01G000200	chr7D	74.675	462	95	19	1026	1476	608809875	608809425	7.270000e-43	185.0
39	TraesCS2B01G000200	chr7D	72.684	637	137	27	1026	1645	982261	981645	1.220000e-40	178.0
40	TraesCS2B01G000200	chr7D	73.662	467	93	20	1026	1477	480857	480406	2.050000e-33	154.0
41	TraesCS2B01G000200	chr7D	73.060	464	94	17	2587	3044	915750	915312	7.430000e-28	135.0
42	TraesCS2B01G000200	chr7D	76.444	225	46	5	1026	1245	915746	915524	9.680000e-22	115.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2B01G000200	chr2B	18907	23166	4259	False	7867.000000	7867	100.000000	1	4260	1	chr2B.!!$F1	4259
1	TraesCS2B01G000200	chr2B	447429	452082	4653	True	1616.000000	3960	89.819750	1	4005	4	chr2B.!!$R3	4004
2	TraesCS2B01G000200	chr2B	118340	122158	3818	True	1537.666667	2122	93.339333	1	3193	3	chr2B.!!$R2	3192
3	TraesCS2B01G000200	chr2B	112067	113864	1797	True	337.500000	811	93.834250	3342	4260	4	chr2B.!!$R1	918
4	TraesCS2B01G000200	chr2D	1958299	1961873	3574	True	1241.625000	4556	92.572000	1	3977	4	chr2D.!!$R2	3976
5	TraesCS2B01G000200	chr2A	1857460	1862544	5084	True	1297.500000	4252	92.820000	1	3988	4	chr2A.!!$R1	3987

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
241	264	0.251916	TGATGGTTGGATCCGGTGAC	59.748	55.000	7.39	3.15	0.00	3.67	F
998	2474	1.066002	CAGTTCTTGCACAACACCCAG	59.934	52.381	9.78	0.00	0.00	4.45	F
1499	2976	0.107945	CTGGAGCTAAGCCAGTCCAC	60.108	60.000	11.04	0.00	46.19	4.02	F
1570	3056	0.535335	TACAGGGTCTTCGCACCATC	59.465	55.000	1.14	0.00	38.32	3.51	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1482	2959	0.543749	ATGTGGACTGGCTTAGCTCC	59.456	55.000	3.59	3.99	0.0	4.70	R
1974	4128	0.553333	TGTTTGGGGTGGACATGACA	59.447	50.000	0.00	0.00	0.0	3.58	R
3202	5984	1.302033	CAGTTGCGAGAAGGGTGCT	60.302	57.895	0.00	0.00	0.0	4.40	R
3531	6324	0.032952	GTGTAGGTGAGCCGTGTGAA	59.967	55.000	0.00	0.00	40.5	3.18	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
235	258	2.149973	AGCCTTTGATGGTTGGATCC	57.850	50.000	4.20	4.20	0.00	3.36
236	259	0.740737	GCCTTTGATGGTTGGATCCG	59.259	55.000	7.39	0.00	0.00	4.18
237	260	1.392589	CCTTTGATGGTTGGATCCGG	58.607	55.000	7.39	0.00	0.00	5.14
238	261	1.340991	CCTTTGATGGTTGGATCCGGT	60.341	52.381	7.39	0.00	0.00	5.28
239	262	1.745087	CTTTGATGGTTGGATCCGGTG	59.255	52.381	7.39	0.00	0.00	4.94
240	263	0.988063	TTGATGGTTGGATCCGGTGA	59.012	50.000	7.39	0.00	0.00	4.02
241	264	0.251916	TGATGGTTGGATCCGGTGAC	59.748	55.000	7.39	3.15	0.00	3.67
280	303	2.218603	GTTCCTTCTTGAAGGCGTTGA	58.781	47.619	21.16	4.45	39.80	3.18
307	330	1.760613	AGAACCTTGTCGTCCTTGTGA	59.239	47.619	0.00	0.00	0.00	3.58
338	361	1.276622	AGTTGGTGCGGATAAGGTCT	58.723	50.000	0.00	0.00	0.00	3.85
361	384	1.153353	CCGTAGTTTGTCCATTGCGT	58.847	50.000	0.00	0.00	0.00	5.24
380	403	4.098416	GCGTATTTGATGCTTTGGAGTTC	58.902	43.478	0.00	0.00	37.09	3.01
433	456	1.299541	ATGACTTTGCTATTCGCCGG	58.700	50.000	0.00	0.00	38.05	6.13
464	487	3.351740	TCTTGTGTGTGTTGATGTTGGT	58.648	40.909	0.00	0.00	0.00	3.67
478	501	2.937519	TGTTGGTTGTGTGCATCCTAA	58.062	42.857	0.00	0.00	35.89	2.69
514	537	2.159254	GGTGTGTGCTCATTGTGTTTGT	60.159	45.455	0.00	0.00	0.00	2.83
535	558	9.754382	GTTTGTATCCATTTGATGCTTCATATT	57.246	29.630	2.75	0.00	37.04	1.28
563	586	9.326413	AGTCAATAAAATCTACACTTTATCGGG	57.674	33.333	0.00	0.00	29.50	5.14
564	587	9.321562	GTCAATAAAATCTACACTTTATCGGGA	57.678	33.333	0.00	0.00	29.50	5.14
877	2352	9.069078	CAGCTACATACACAAATTGATGAAAAG	57.931	33.333	0.00	0.00	0.00	2.27
998	2474	1.066002	CAGTTCTTGCACAACACCCAG	59.934	52.381	9.78	0.00	0.00	4.45
1287	2763	2.949447	AGGACTGCCTGTGTCAAAAAT	58.051	42.857	0.00	0.00	44.90	1.82
1330	2806	8.791327	TGAAGCACATAGACTAATCAATGAAA	57.209	30.769	0.00	0.00	0.00	2.69
1332	2808	9.495754	GAAGCACATAGACTAATCAATGAAAAC	57.504	33.333	0.00	0.00	0.00	2.43
1398	2875	2.568623	ACAAGGGCGACTTCTTTGAT	57.431	45.000	0.00	0.00	37.29	2.57
1446	2923	1.273327	CCCGTCTACACGTTTACCCTT	59.727	52.381	0.00	0.00	45.17	3.95
1482	2959	7.332926	GCATATAACCAGGTATGAATCTGACTG	59.667	40.741	5.14	0.00	33.11	3.51
1499	2976	0.107945	CTGGAGCTAAGCCAGTCCAC	60.108	60.000	11.04	0.00	46.19	4.02
1502	2979	1.065126	GGAGCTAAGCCAGTCCACATT	60.065	52.381	0.00	0.00	0.00	2.71
1570	3056	0.535335	TACAGGGTCTTCGCACCATC	59.465	55.000	1.14	0.00	38.32	3.51
1588	3074	1.978617	CGCAGCAAATTCCCCAGGT	60.979	57.895	0.00	0.00	0.00	4.00
1610	3096	1.988982	GATGTTCAGCCCCCTCCCTC	61.989	65.000	0.00	0.00	0.00	4.30
1615	3101	3.626596	AGCCCCCTCCCTCTTCCA	61.627	66.667	0.00	0.00	0.00	3.53
1621	3107	1.662686	CCCTCCCTCTTCCAGACTTT	58.337	55.000	0.00	0.00	0.00	2.66
1635	3121	2.941720	CAGACTTTCCAAGCCTATCTGC	59.058	50.000	0.00	0.00	0.00	4.26
1711	3863	4.034410	AGAAGAATCCTAGTCCCACTTCC	58.966	47.826	0.00	0.00	34.69	3.46
1776	3930	9.971922	GGAGTATTCATAAAATTATGCTTGCTT	57.028	29.630	8.05	0.00	40.19	3.91
1974	4128	3.652057	AGTTGCCTTGGCTACACATAT	57.348	42.857	23.43	4.49	0.00	1.78
2107	4261	0.607217	CAACATGGCAGCTGGTCTCA	60.607	55.000	17.12	0.75	0.00	3.27
2253	4407	4.320494	CCAGTTCACACATTTACTCTTGGC	60.320	45.833	0.00	0.00	0.00	4.52
2293	4447	6.596497	CCAAGTACGTATTTGACCAGGTTTAT	59.404	38.462	26.80	0.00	0.00	1.40
2349	4503	4.897025	TCAATTTGCGCACATATCATGA	57.103	36.364	11.12	7.11	0.00	3.07
2488	4642	1.221840	CCTCAGTGGCGCAGGTATT	59.778	57.895	10.83	0.00	0.00	1.89
2948	5729	1.004161	TCCGATGGGCTGATCAACAAA	59.996	47.619	0.00	0.00	0.00	2.83
3056	5837	6.516718	CGTAAGTACAAGATTGGAGATCCAT	58.483	40.000	1.61	0.00	46.97	3.41
3202	5984	2.632996	CCCTGATAAGCCGAATCTACCA	59.367	50.000	0.00	0.00	0.00	3.25
3425	6216	0.332972	GGAGAAACAAGGAGGGGCAT	59.667	55.000	0.00	0.00	0.00	4.40
3439	6232	1.410153	GGGGCATGTGATGATGAAACC	59.590	52.381	0.00	0.00	0.00	3.27
3440	6233	1.066002	GGGCATGTGATGATGAAACCG	59.934	52.381	0.00	0.00	0.00	4.44
3441	6234	1.534595	GGCATGTGATGATGAAACCGC	60.535	52.381	0.00	0.00	0.00	5.68
3442	6235	1.857204	GCATGTGATGATGAAACCGCG	60.857	52.381	0.00	0.00	0.00	6.46
3470	6263	2.357881	TTGCTGAGGCTGCGAGTG	60.358	61.111	0.00	0.00	39.59	3.51
3473	6266	2.345244	CTGAGGCTGCGAGTGGTT	59.655	61.111	0.00	0.00	0.00	3.67
3482	6275	3.423154	CGAGTGGTTGCCGCCTTC	61.423	66.667	0.00	0.00	33.99	3.46
3519	6312	1.568504	ACTCTACCTCCGCCATTTCA	58.431	50.000	0.00	0.00	0.00	2.69
3531	6324	2.159393	CGCCATTTCAAATCGTCACCAT	60.159	45.455	0.00	0.00	0.00	3.55
3552	6345	0.944311	CACACGGCTCACCTACACAC	60.944	60.000	0.00	0.00	0.00	3.82
3563	6356	6.376018	GGCTCACCTACACACCAATAAATTTA	59.624	38.462	0.00	0.00	0.00	1.40
3584	6377	2.951457	AATTTACATTTTCGGCCCGG	57.049	45.000	1.90	0.00	0.00	5.73
3585	6378	1.107945	ATTTACATTTTCGGCCCGGG	58.892	50.000	19.09	19.09	0.00	5.73
3586	6379	1.596895	TTTACATTTTCGGCCCGGGC	61.597	55.000	38.57	38.57	41.06	6.13
3587	6380	2.766306	TTACATTTTCGGCCCGGGCA	62.766	55.000	44.46	26.47	44.11	5.36
3589	6382	4.360405	ATTTTCGGCCCGGGCAGT	62.360	61.111	44.46	23.73	44.11	4.40
3595	6388	3.489513	GGCCCGGGCAGTCCTTAT	61.490	66.667	44.46	0.00	44.11	1.73
3596	6389	2.595655	GCCCGGGCAGTCCTTATT	59.404	61.111	40.73	0.00	41.49	1.40
3671	6496	7.411486	TTCCTTTGGTTTTCTTGTAATCACA	57.589	32.000	0.00	0.00	0.00	3.58
3678	6503	7.708998	TGGTTTTCTTGTAATCACACTTTACC	58.291	34.615	0.00	0.00	33.30	2.85
3840	7586	4.260212	GCTATTAATTTCGAAGTCAGCGCA	60.260	41.667	11.47	0.00	0.00	6.09
3878	7624	2.267006	GCTAGCTGCTGTCTGGCA	59.733	61.111	13.43	0.00	37.87	4.92
3988	7759	5.059833	GGAGAGATTAATGCGGAGTGATTT	58.940	41.667	0.00	0.00	0.00	2.17
4040	7811	6.710295	TGAGTGTTACTGTCTTGTGCATATTT	59.290	34.615	0.00	0.00	0.00	1.40
4095	7866	6.696441	TGTAATTGATGAGTTATGCATGCA	57.304	33.333	25.04	25.04	0.00	3.96
4127	7898	9.336171	AGCTTCCACTTTATTTTGATAGAGATC	57.664	33.333	0.00	0.00	0.00	2.75

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
201	203	5.869579	TCAAAGGCTAGATCAAGTTGTTCT	58.130	37.500	18.13	18.13	31.89	3.01
240	263	4.838152	ATGATCAAGCGCCGCCGT	62.838	61.111	4.98	0.00	36.67	5.68
241	264	4.005472	GATGATCAAGCGCCGCCG	62.005	66.667	4.98	0.00	37.57	6.46
242	265	4.005472	CGATGATCAAGCGCCGCC	62.005	66.667	4.98	0.00	0.00	6.13
243	266	4.005472	CCGATGATCAAGCGCCGC	62.005	66.667	2.29	0.00	0.00	6.53
244	267	2.094126	GAACCGATGATCAAGCGCCG	62.094	60.000	2.29	0.00	0.00	6.46
245	268	1.643832	GAACCGATGATCAAGCGCC	59.356	57.895	2.29	0.00	0.00	6.53
246	269	0.811616	AGGAACCGATGATCAAGCGC	60.812	55.000	13.90	0.00	0.00	5.92
247	270	1.594862	GAAGGAACCGATGATCAAGCG	59.405	52.381	12.75	12.75	0.00	4.68
248	271	2.911484	AGAAGGAACCGATGATCAAGC	58.089	47.619	0.00	0.00	0.00	4.01
249	272	4.507710	TCAAGAAGGAACCGATGATCAAG	58.492	43.478	0.00	0.00	0.00	3.02
250	273	4.551702	TCAAGAAGGAACCGATGATCAA	57.448	40.909	0.00	0.00	0.00	2.57
251	274	4.507710	CTTCAAGAAGGAACCGATGATCA	58.492	43.478	0.00	0.00	34.87	2.92
280	303	3.139077	GGACGACAAGGTTCTTCAACAT	58.861	45.455	0.00	0.00	33.70	2.71
307	330	2.485426	CGCACCAACTTTCTCATGACAT	59.515	45.455	0.00	0.00	0.00	3.06
338	361	2.287909	GCAATGGACAAACTACGGCAAA	60.288	45.455	0.00	0.00	0.00	3.68
387	410	4.784838	AGACCAATGCTATGCCTATCCATA	59.215	41.667	0.00	0.00	0.00	2.74
403	426	7.201644	CGAATAGCAAAGTCATACAAGACCAAT	60.202	37.037	0.00	0.00	39.34	3.16
478	501	2.365635	ACCCGGCCTCTGCATAGT	60.366	61.111	0.00	0.00	40.13	2.12
514	537	8.929260	ACTCAATATGAAGCATCAAATGGATA	57.071	30.769	0.00	0.00	39.49	2.59
807	1109	5.287513	CGCTCTCTTTCTCTTAGTAAAGCAC	59.712	44.000	0.00	0.00	33.61	4.40
877	2352	8.833231	AGCCATAGACACACATAATATGTAAC	57.167	34.615	5.49	0.00	42.70	2.50
998	2474	2.158900	CCATCCACTGGTCCACTCATAC	60.159	54.545	0.00	0.00	40.49	2.39
1287	2763	5.835280	TGCTTCATAGAGTCCAGATGTCATA	59.165	40.000	0.00	0.00	0.00	2.15
1330	2806	2.824936	TGATTGCATTCATGTTCCCGTT	59.175	40.909	7.19	0.00	0.00	4.44
1332	2808	3.317149	AGATGATTGCATTCATGTTCCCG	59.683	43.478	24.72	0.00	36.48	5.14
1446	2923	2.884012	CTGGTTATATGCATTTCCGCCA	59.116	45.455	3.54	6.99	0.00	5.69
1482	2959	0.543749	ATGTGGACTGGCTTAGCTCC	59.456	55.000	3.59	3.99	0.00	4.70
1570	3056	1.978617	ACCTGGGGAATTTGCTGCG	60.979	57.895	0.00	0.00	0.00	5.18
1588	3074	2.204291	AGGGGGCTGAACATCCCA	60.204	61.111	14.41	0.00	44.43	4.37
1621	3107	2.505982	GGCGCAGATAGGCTTGGA	59.494	61.111	10.83	0.00	0.00	3.53
1635	3121	0.674895	CAAGAGTTGGGAGAAGGGCG	60.675	60.000	0.00	0.00	0.00	6.13
1711	3863	9.193133	GGATCGGATGATTTTGTATATATACCG	57.807	37.037	18.20	11.86	34.09	4.02
1776	3930	3.181482	ACGCAATCACATGTTTGTTTCCA	60.181	39.130	11.03	0.00	32.34	3.53
1789	3943	5.581605	ACCATTCATCATTTACGCAATCAC	58.418	37.500	0.00	0.00	0.00	3.06
1974	4128	0.553333	TGTTTGGGGTGGACATGACA	59.447	50.000	0.00	0.00	0.00	3.58
2107	4261	1.135915	GATCAGTCTGTGTGCCTCGAT	59.864	52.381	0.00	0.00	0.00	3.59
2253	4407	4.621460	CGTACTTGGTTATATGCATCTCCG	59.379	45.833	0.19	0.00	0.00	4.63
2349	4503	9.326489	TGGTGAAAAGATCCTATAGCATATACT	57.674	33.333	0.00	0.00	0.00	2.12
2369	4523	4.438065	CGGTGAATTTATTGCGATGGTGAA	60.438	41.667	0.00	0.00	0.00	3.18
2488	4642	5.699915	TCGGGTCGAATATTTGTTGTTACAA	59.300	36.000	2.57	0.00	36.28	2.41
2770	5551	5.986004	ATCGGTCGAATCAACTATTTTCC	57.014	39.130	0.00	0.00	0.00	3.13
2948	5729	2.769095	GGCTCCATCAAAGTAGTCTCCT	59.231	50.000	0.00	0.00	0.00	3.69
3053	5834	9.439500	AAATTGTCATGAAACTTGGATTAATGG	57.561	29.630	0.00	0.00	0.00	3.16
3202	5984	1.302033	CAGTTGCGAGAAGGGTGCT	60.302	57.895	0.00	0.00	0.00	4.40
3425	6216	1.793581	GCGCGGTTTCATCATCACA	59.206	52.632	8.83	0.00	0.00	3.58
3498	6291	2.429610	TGAAATGGCGGAGGTAGAGTAC	59.570	50.000	0.00	0.00	0.00	2.73
3519	6312	1.804151	CCGTGTGAATGGTGACGATTT	59.196	47.619	0.00	0.00	33.64	2.17
3531	6324	0.032952	GTGTAGGTGAGCCGTGTGAA	59.967	55.000	0.00	0.00	40.50	3.18
3563	6356	3.319689	CCCGGGCCGAAAATGTAAATTAT	59.680	43.478	30.79	0.00	0.00	1.28
3584	6377	4.261801	TGCAGAAGTAAATAAGGACTGCC	58.738	43.478	0.00	0.00	45.39	4.85
3585	6378	7.281100	AGTTATGCAGAAGTAAATAAGGACTGC	59.719	37.037	0.00	0.00	45.92	4.40
3586	6379	8.723942	AGTTATGCAGAAGTAAATAAGGACTG	57.276	34.615	0.00	0.00	0.00	3.51
3587	6380	9.740710	AAAGTTATGCAGAAGTAAATAAGGACT	57.259	29.630	1.04	0.00	0.00	3.85
3632	6457	5.221244	ACCAAAGGAAACTCATGCAACTAAC	60.221	40.000	0.00	0.00	42.68	2.34
3671	6496	4.856182	AGGGGAAACTTGATAGGGTAAAGT	59.144	41.667	0.00	0.00	35.70	2.66
3678	6503	7.954666	TCAAATTAAGGGGAAACTTGATAGG	57.045	36.000	0.00	0.00	32.02	2.57
3759	7464	3.319972	GCAGCATGTATGGACCATCATTT	59.680	43.478	11.17	3.25	39.31	2.32
3840	7586	3.875134	GCTAACCTAACATGTACGCCAAT	59.125	43.478	0.00	0.00	0.00	3.16
3988	7759	5.986741	TGAAGTTCTTTGTAGTTGCATCGTA	59.013	36.000	4.17	0.00	0.00	3.43
4040	7811	2.922740	ACCTCGAGTAAGCAAAACCA	57.077	45.000	12.31	0.00	0.00	3.67
4095	7866	5.010922	TCAAAATAAAGTGGAAGCTGTGCAT	59.989	36.000	0.00	0.00	0.00	3.96
4127	7898	2.781681	ACTACTCCCCGGTCAAATTG	57.218	50.000	0.00	0.00	0.00	2.32

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.