Multiple sequence alignment - TraesCS2A01G593300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G593300 chr2A 100.000 2762 0 0 1 2762 779889228 779891989 0.000000e+00 5101
1 TraesCS2A01G593300 chr2D 90.375 1600 71 24 504 2060 633711399 633709840 0.000000e+00 2025
2 TraesCS2A01G593300 chr2D 89.636 357 25 6 2406 2762 633709059 633708715 7.020000e-121 444
3 TraesCS2A01G593300 chr2D 91.277 321 26 2 2083 2401 586967375 586967695 1.170000e-118 436
4 TraesCS2A01G593300 chr2D 91.223 319 23 5 2083 2398 136605393 136605709 1.970000e-116 429
5 TraesCS2A01G593300 chr2D 91.892 185 11 3 9 189 633711648 633711464 3.530000e-64 255
6 TraesCS2A01G593300 chr2B 90.619 1535 74 34 504 2012 776709134 776707644 0.000000e+00 1973
7 TraesCS2A01G593300 chr2B 90.214 327 29 3 2078 2402 473356926 473357251 9.140000e-115 424
8 TraesCS2A01G593300 chr2B 87.333 300 30 4 2464 2762 776707295 776707003 1.230000e-88 337
9 TraesCS2A01G593300 chr2B 89.583 192 17 2 1 189 776709390 776709199 9.880000e-60 241
10 TraesCS2A01G593300 chr7A 93.417 319 20 1 2082 2400 590437520 590437203 3.220000e-129 472
11 TraesCS2A01G593300 chr7A 91.049 324 26 2 2083 2404 202508466 202508144 4.220000e-118 435
12 TraesCS2A01G593300 chr1A 91.900 321 23 2 2081 2399 471271554 471271873 1.950000e-121 446
13 TraesCS2A01G593300 chr1A 91.195 318 26 2 2083 2399 520464533 520464849 5.460000e-117 431
14 TraesCS2A01G593300 chr7D 91.250 320 26 1 2082 2399 104693265 104693584 4.220000e-118 435
15 TraesCS2A01G593300 chr1D 90.683 322 27 2 2080 2399 443782615 443782295 2.540000e-115 425


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G593300 chr2A 779889228 779891989 2761 False 5101.000000 5101 100.000000 1 2762 1 chr2A.!!$F1 2761
1 TraesCS2A01G593300 chr2D 633708715 633711648 2933 True 908.000000 2025 90.634333 9 2762 3 chr2D.!!$R1 2753
2 TraesCS2A01G593300 chr2B 776707003 776709390 2387 True 850.333333 1973 89.178333 1 2762 3 chr2B.!!$R1 2761

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
326 331 0.036388 GATGTGAAGCCGTGAAGGGA 60.036 55.0 0.0 0.0 41.48 4.20 F
887 910 0.042131 ACCCGATCACCCCTCAACTA 59.958 55.0 0.0 0.0 0.00 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1725 1766 0.111061 TGAAGGTGCAGCTGTTGGAT 59.889 50.0 20.97 1.43 0.00 3.41 R
2725 3471 0.525668 AGCCGACGAGCAAATCTACG 60.526 55.0 10.28 0.00 34.23 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
99 101 9.144747 CCGGATACACATTAATCTATTCTGAAG 57.855 37.037 0.00 0.00 0.00 3.02
160 162 2.585845 CGATGGAGATCGTTATGACCG 58.414 52.381 0.00 0.00 45.43 4.79
161 163 2.329379 GATGGAGATCGTTATGACCGC 58.671 52.381 0.00 0.00 0.00 5.68
170 172 2.097954 TCGTTATGACCGCTTACACGAT 59.902 45.455 0.00 0.00 34.06 3.73
178 180 1.663445 CCGCTTACACGATCGATCTCC 60.663 57.143 24.34 4.36 34.06 3.71
179 181 1.002792 CGCTTACACGATCGATCTCCA 60.003 52.381 24.34 3.11 34.06 3.86
189 194 8.051901 ACACGATCGATCTCCATAATTACATA 57.948 34.615 24.34 0.00 0.00 2.29
190 195 7.968956 ACACGATCGATCTCCATAATTACATAC 59.031 37.037 24.34 0.00 0.00 2.39
191 196 8.184848 CACGATCGATCTCCATAATTACATACT 58.815 37.037 24.34 0.00 0.00 2.12
192 197 8.184848 ACGATCGATCTCCATAATTACATACTG 58.815 37.037 24.34 3.63 0.00 2.74
193 198 8.184848 CGATCGATCTCCATAATTACATACTGT 58.815 37.037 22.43 0.00 0.00 3.55
210 215 8.997621 ACATACTGTATCAAAATACAAGACGT 57.002 30.769 0.00 0.00 45.42 4.34
211 216 9.431887 ACATACTGTATCAAAATACAAGACGTT 57.568 29.630 0.00 0.00 45.42 3.99
260 265 4.350368 TTTTGACACTCTGGTAGCATCA 57.650 40.909 0.00 0.00 0.00 3.07
261 266 4.350368 TTTGACACTCTGGTAGCATCAA 57.650 40.909 4.26 4.26 32.98 2.57
262 267 4.350368 TTGACACTCTGGTAGCATCAAA 57.650 40.909 5.63 0.00 32.28 2.69
263 268 4.350368 TGACACTCTGGTAGCATCAAAA 57.650 40.909 0.00 0.00 0.00 2.44
264 269 4.713553 TGACACTCTGGTAGCATCAAAAA 58.286 39.130 0.00 0.00 0.00 1.94
318 323 9.520204 AAAATCTTATATTTTGATGTGAAGCCG 57.480 29.630 0.00 0.00 30.84 5.52
319 324 7.807977 ATCTTATATTTTGATGTGAAGCCGT 57.192 32.000 0.00 0.00 0.00 5.68
320 325 7.015226 TCTTATATTTTGATGTGAAGCCGTG 57.985 36.000 0.00 0.00 0.00 4.94
321 326 6.821160 TCTTATATTTTGATGTGAAGCCGTGA 59.179 34.615 0.00 0.00 0.00 4.35
322 327 5.895636 ATATTTTGATGTGAAGCCGTGAA 57.104 34.783 0.00 0.00 0.00 3.18
323 328 3.624326 TTTTGATGTGAAGCCGTGAAG 57.376 42.857 0.00 0.00 0.00 3.02
324 329 1.522668 TTGATGTGAAGCCGTGAAGG 58.477 50.000 0.00 0.00 44.97 3.46
325 330 0.321564 TGATGTGAAGCCGTGAAGGG 60.322 55.000 0.00 0.00 41.48 3.95
326 331 0.036388 GATGTGAAGCCGTGAAGGGA 60.036 55.000 0.00 0.00 41.48 4.20
327 332 0.400213 ATGTGAAGCCGTGAAGGGAA 59.600 50.000 0.00 0.00 41.48 3.97
328 333 0.400213 TGTGAAGCCGTGAAGGGAAT 59.600 50.000 0.00 0.00 41.48 3.01
329 334 1.626321 TGTGAAGCCGTGAAGGGAATA 59.374 47.619 0.00 0.00 41.48 1.75
330 335 2.238646 TGTGAAGCCGTGAAGGGAATAT 59.761 45.455 0.00 0.00 41.48 1.28
331 336 2.614057 GTGAAGCCGTGAAGGGAATATG 59.386 50.000 0.00 0.00 41.48 1.78
332 337 2.238646 TGAAGCCGTGAAGGGAATATGT 59.761 45.455 0.00 0.00 41.48 2.29
333 338 2.622064 AGCCGTGAAGGGAATATGTC 57.378 50.000 0.00 0.00 41.48 3.06
335 340 1.141053 GCCGTGAAGGGAATATGTCCT 59.859 52.381 0.00 0.00 46.92 3.85
336 341 2.421529 GCCGTGAAGGGAATATGTCCTT 60.422 50.000 8.98 8.98 46.92 3.36
337 342 3.181458 GCCGTGAAGGGAATATGTCCTTA 60.181 47.826 9.15 0.00 46.92 2.69
338 343 4.685030 GCCGTGAAGGGAATATGTCCTTAA 60.685 45.833 9.15 1.24 46.92 1.85
339 344 5.433526 CCGTGAAGGGAATATGTCCTTAAA 58.566 41.667 9.15 0.93 46.92 1.52
350 355 9.117183 GGAATATGTCCTTAAATTACTCGGTTT 57.883 33.333 0.00 0.00 43.98 3.27
354 359 7.989416 TGTCCTTAAATTACTCGGTTTCAAT 57.011 32.000 0.00 0.00 0.00 2.57
355 360 8.398878 TGTCCTTAAATTACTCGGTTTCAATT 57.601 30.769 0.00 0.00 0.00 2.32
365 370 6.627395 ACTCGGTTTCAATTATTCAACACA 57.373 33.333 0.00 0.00 0.00 3.72
368 373 7.807907 ACTCGGTTTCAATTATTCAACACAATC 59.192 33.333 0.00 0.00 0.00 2.67
369 374 7.881142 TCGGTTTCAATTATTCAACACAATCT 58.119 30.769 0.00 0.00 0.00 2.40
370 375 7.807433 TCGGTTTCAATTATTCAACACAATCTG 59.193 33.333 0.00 0.00 0.00 2.90
371 376 7.807433 CGGTTTCAATTATTCAACACAATCTGA 59.193 33.333 0.69 0.00 0.00 3.27
372 377 9.132521 GGTTTCAATTATTCAACACAATCTGAG 57.867 33.333 0.69 0.00 0.00 3.35
374 379 7.451501 TCAATTATTCAACACAATCTGAGCA 57.548 32.000 0.00 0.00 0.00 4.26
375 380 7.307694 TCAATTATTCAACACAATCTGAGCAC 58.692 34.615 0.00 0.00 0.00 4.40
376 381 6.822667 ATTATTCAACACAATCTGAGCACA 57.177 33.333 0.00 0.00 0.00 4.57
377 382 6.822667 TTATTCAACACAATCTGAGCACAT 57.177 33.333 0.00 0.00 0.00 3.21
378 383 4.754372 TTCAACACAATCTGAGCACATC 57.246 40.909 0.00 0.00 0.00 3.06
379 384 3.076621 TCAACACAATCTGAGCACATCC 58.923 45.455 0.00 0.00 0.00 3.51
380 385 3.079578 CAACACAATCTGAGCACATCCT 58.920 45.455 0.00 0.00 0.00 3.24
381 386 4.020307 TCAACACAATCTGAGCACATCCTA 60.020 41.667 0.00 0.00 0.00 2.94
382 387 4.134379 ACACAATCTGAGCACATCCTAG 57.866 45.455 0.00 0.00 0.00 3.02
383 388 3.517100 ACACAATCTGAGCACATCCTAGT 59.483 43.478 0.00 0.00 0.00 2.57
384 389 4.711846 ACACAATCTGAGCACATCCTAGTA 59.288 41.667 0.00 0.00 0.00 1.82
385 390 5.046529 CACAATCTGAGCACATCCTAGTAC 58.953 45.833 0.00 0.00 0.00 2.73
386 391 4.100189 ACAATCTGAGCACATCCTAGTACC 59.900 45.833 0.00 0.00 0.00 3.34
387 392 3.382083 TCTGAGCACATCCTAGTACCA 57.618 47.619 0.00 0.00 0.00 3.25
388 393 3.708451 TCTGAGCACATCCTAGTACCAA 58.292 45.455 0.00 0.00 0.00 3.67
389 394 3.701542 TCTGAGCACATCCTAGTACCAAG 59.298 47.826 0.00 0.00 0.00 3.61
391 396 2.766828 GAGCACATCCTAGTACCAAGGT 59.233 50.000 10.79 0.00 35.48 3.50
392 397 3.182152 AGCACATCCTAGTACCAAGGTT 58.818 45.455 10.79 1.62 35.48 3.50
393 398 3.197983 AGCACATCCTAGTACCAAGGTTC 59.802 47.826 10.79 0.00 35.48 3.62
394 399 3.782046 CACATCCTAGTACCAAGGTTCG 58.218 50.000 10.79 4.77 35.48 3.95
395 400 3.446161 CACATCCTAGTACCAAGGTTCGA 59.554 47.826 10.79 0.00 35.48 3.71
396 401 4.081862 CACATCCTAGTACCAAGGTTCGAA 60.082 45.833 10.79 0.00 35.48 3.71
397 402 4.081807 ACATCCTAGTACCAAGGTTCGAAC 60.082 45.833 20.14 20.14 35.48 3.95
406 411 2.126189 GGTTCGAACCTCGTCGGG 60.126 66.667 34.98 0.00 45.75 5.14
407 412 2.126189 GTTCGAACCTCGTCGGGG 60.126 66.667 17.68 10.39 41.35 5.73
408 413 2.598394 TTCGAACCTCGTCGGGGT 60.598 61.111 12.17 12.17 41.35 4.95
409 414 2.629656 TTCGAACCTCGTCGGGGTC 61.630 63.158 19.23 12.26 41.35 4.46
411 416 3.058160 GAACCTCGTCGGGGTCGA 61.058 66.667 19.23 0.00 43.86 4.20
433 438 1.988293 TTTTTGGTGCCTCATTCGGA 58.012 45.000 0.00 0.00 0.00 4.55
434 439 2.214376 TTTTGGTGCCTCATTCGGAT 57.786 45.000 0.00 0.00 0.00 4.18
435 440 3.358111 TTTTGGTGCCTCATTCGGATA 57.642 42.857 0.00 0.00 0.00 2.59
436 441 2.620251 TTGGTGCCTCATTCGGATAG 57.380 50.000 0.00 0.00 0.00 2.08
437 442 0.758734 TGGTGCCTCATTCGGATAGG 59.241 55.000 0.00 0.00 0.00 2.57
443 448 3.760580 CCTCATTCGGATAGGCTTCTT 57.239 47.619 0.00 0.00 0.00 2.52
444 449 3.658709 CCTCATTCGGATAGGCTTCTTC 58.341 50.000 0.00 0.00 0.00 2.87
445 450 3.323403 CCTCATTCGGATAGGCTTCTTCT 59.677 47.826 0.00 0.00 0.00 2.85
446 451 4.524714 CCTCATTCGGATAGGCTTCTTCTA 59.475 45.833 0.00 0.00 0.00 2.10
447 452 5.186797 CCTCATTCGGATAGGCTTCTTCTAT 59.813 44.000 0.00 0.00 0.00 1.98
448 453 6.378564 CCTCATTCGGATAGGCTTCTTCTATA 59.621 42.308 0.00 0.00 0.00 1.31
449 454 7.093727 CCTCATTCGGATAGGCTTCTTCTATAA 60.094 40.741 0.00 0.00 0.00 0.98
450 455 8.190326 TCATTCGGATAGGCTTCTTCTATAAA 57.810 34.615 0.00 0.00 0.00 1.40
451 456 8.647796 TCATTCGGATAGGCTTCTTCTATAAAA 58.352 33.333 0.00 0.00 0.00 1.52
452 457 9.442047 CATTCGGATAGGCTTCTTCTATAAAAT 57.558 33.333 0.00 0.00 0.00 1.82
473 478 8.788325 AAAATTATGTCCTAGGTGTTAGTGTC 57.212 34.615 9.08 0.00 0.00 3.67
474 479 5.927281 TTATGTCCTAGGTGTTAGTGTCC 57.073 43.478 9.08 0.00 0.00 4.02
475 480 3.247948 TGTCCTAGGTGTTAGTGTCCA 57.752 47.619 9.08 0.00 0.00 4.02
476 481 3.162666 TGTCCTAGGTGTTAGTGTCCAG 58.837 50.000 9.08 0.00 0.00 3.86
477 482 3.163467 GTCCTAGGTGTTAGTGTCCAGT 58.837 50.000 9.08 0.00 0.00 4.00
478 483 3.056749 GTCCTAGGTGTTAGTGTCCAGTG 60.057 52.174 9.08 0.00 0.00 3.66
479 484 3.162666 CCTAGGTGTTAGTGTCCAGTGA 58.837 50.000 0.00 0.00 0.00 3.41
480 485 3.769844 CCTAGGTGTTAGTGTCCAGTGAT 59.230 47.826 0.00 0.00 0.00 3.06
481 486 3.963428 AGGTGTTAGTGTCCAGTGATC 57.037 47.619 0.00 0.00 0.00 2.92
482 487 3.511477 AGGTGTTAGTGTCCAGTGATCT 58.489 45.455 0.00 0.00 0.00 2.75
483 488 3.904339 AGGTGTTAGTGTCCAGTGATCTT 59.096 43.478 0.00 0.00 0.00 2.40
484 489 5.084519 AGGTGTTAGTGTCCAGTGATCTTA 58.915 41.667 0.00 0.00 0.00 2.10
485 490 5.721960 AGGTGTTAGTGTCCAGTGATCTTAT 59.278 40.000 0.00 0.00 0.00 1.73
486 491 6.213600 AGGTGTTAGTGTCCAGTGATCTTATT 59.786 38.462 0.00 0.00 0.00 1.40
487 492 6.879458 GGTGTTAGTGTCCAGTGATCTTATTT 59.121 38.462 0.00 0.00 0.00 1.40
488 493 7.390718 GGTGTTAGTGTCCAGTGATCTTATTTT 59.609 37.037 0.00 0.00 0.00 1.82
489 494 8.784043 GTGTTAGTGTCCAGTGATCTTATTTTT 58.216 33.333 0.00 0.00 0.00 1.94
515 520 2.837532 TACAAGCTGAGCACATGACA 57.162 45.000 7.39 0.00 0.00 3.58
601 616 0.524862 CTGCACATGGAGCCAGAAAC 59.475 55.000 9.52 0.00 0.00 2.78
602 617 0.111061 TGCACATGGAGCCAGAAACT 59.889 50.000 9.52 0.00 0.00 2.66
604 619 2.224744 TGCACATGGAGCCAGAAACTTA 60.225 45.455 9.52 0.00 0.00 2.24
607 622 3.820467 CACATGGAGCCAGAAACTTACAA 59.180 43.478 0.00 0.00 0.00 2.41
608 623 4.460382 CACATGGAGCCAGAAACTTACAAT 59.540 41.667 0.00 0.00 0.00 2.71
609 624 4.702131 ACATGGAGCCAGAAACTTACAATC 59.298 41.667 0.00 0.00 0.00 2.67
610 625 4.365514 TGGAGCCAGAAACTTACAATCA 57.634 40.909 0.00 0.00 0.00 2.57
611 626 4.724399 TGGAGCCAGAAACTTACAATCAA 58.276 39.130 0.00 0.00 0.00 2.57
612 627 5.324409 TGGAGCCAGAAACTTACAATCAAT 58.676 37.500 0.00 0.00 0.00 2.57
613 628 5.415701 TGGAGCCAGAAACTTACAATCAATC 59.584 40.000 0.00 0.00 0.00 2.67
614 629 5.447818 GGAGCCAGAAACTTACAATCAATCG 60.448 44.000 0.00 0.00 0.00 3.34
615 630 5.245531 AGCCAGAAACTTACAATCAATCGA 58.754 37.500 0.00 0.00 0.00 3.59
616 631 5.705441 AGCCAGAAACTTACAATCAATCGAA 59.295 36.000 0.00 0.00 0.00 3.71
617 632 6.206634 AGCCAGAAACTTACAATCAATCGAAA 59.793 34.615 0.00 0.00 0.00 3.46
618 633 6.524586 GCCAGAAACTTACAATCAATCGAAAG 59.475 38.462 0.00 0.00 0.00 2.62
694 709 1.230324 GTGAGACAGCCACTGTTTCC 58.770 55.000 13.72 4.23 45.44 3.13
706 721 4.351192 CCACTGTTTCCAACGAAGAAAAG 58.649 43.478 0.00 0.00 35.13 2.27
717 735 4.701651 ACGAAGAAAAGGGTAAGAAGGT 57.298 40.909 0.00 0.00 0.00 3.50
732 750 2.632996 AGAAGGTCCAAGTCAATCACGA 59.367 45.455 0.00 0.00 0.00 4.35
733 751 3.071023 AGAAGGTCCAAGTCAATCACGAA 59.929 43.478 0.00 0.00 0.00 3.85
738 756 1.398451 CCAAGTCAATCACGAACGCAC 60.398 52.381 0.00 0.00 0.00 5.34
796 814 0.610687 AGACCGGAAGAAAGCTCCAG 59.389 55.000 9.46 0.00 0.00 3.86
817 835 5.006386 CAGCATCTAGAAAGAAACCCAAGT 58.994 41.667 0.00 0.00 34.73 3.16
833 852 1.503818 AAGTAGCACCAACCAACGCG 61.504 55.000 3.53 3.53 0.00 6.01
887 910 0.042131 ACCCGATCACCCCTCAACTA 59.958 55.000 0.00 0.00 0.00 2.24
893 916 1.348064 TCACCCCTCAACTACCACTG 58.652 55.000 0.00 0.00 0.00 3.66
901 924 2.165641 CTCAACTACCACTGCATCGGTA 59.834 50.000 12.49 12.49 36.69 4.02
936 959 5.596836 TTCTTTCTGCAAACCAGTTCATT 57.403 34.783 0.00 0.00 42.38 2.57
947 979 6.401153 GCAAACCAGTTCATTCTACTTCTACG 60.401 42.308 0.00 0.00 0.00 3.51
1225 1266 3.900855 CACTGCTGGTGCTGATCC 58.099 61.111 2.15 0.00 39.22 3.36
1233 1274 1.812922 GGTGCTGATCCTGCTCGTG 60.813 63.158 8.84 0.00 0.00 4.35
1392 1433 0.616891 AGGTGATAACGGACAACCCC 59.383 55.000 0.00 0.00 0.00 4.95
1396 1437 1.420514 TGATAACGGACAACCCCAACA 59.579 47.619 0.00 0.00 0.00 3.33
1769 1813 6.237154 AGCTCAAGCCTAATTAGATCATTCC 58.763 40.000 14.28 0.00 43.38 3.01
1776 1820 5.833131 GCCTAATTAGATCATTCCCAAACCA 59.167 40.000 14.28 0.00 0.00 3.67
1828 1872 5.401531 ACGTGTGTCTTGTATGTAGGATT 57.598 39.130 0.00 0.00 0.00 3.01
1829 1873 5.168569 ACGTGTGTCTTGTATGTAGGATTG 58.831 41.667 0.00 0.00 0.00 2.67
1986 2033 5.437191 AAGATCCGAGGTGTATTCCTTTT 57.563 39.130 0.00 0.00 38.02 2.27
1997 2044 8.000780 AGGTGTATTCCTTTTGCTATGAATTC 57.999 34.615 0.00 0.00 33.52 2.17
2026 2087 6.002704 GGAGAAGATATTGGCTCATGAACAT 58.997 40.000 0.00 0.00 0.00 2.71
2030 2091 8.216423 AGAAGATATTGGCTCATGAACATAGTT 58.784 33.333 0.00 0.00 0.00 2.24
2060 2124 3.429410 GGTTTTCAGGCTTATGCACCATC 60.429 47.826 2.72 0.00 41.91 3.51
2061 2125 2.057137 TTCAGGCTTATGCACCATCC 57.943 50.000 2.72 0.00 41.91 3.51
2063 2127 2.407562 TCAGGCTTATGCACCATCCTA 58.592 47.619 2.72 0.00 41.91 2.94
2065 2129 1.701847 AGGCTTATGCACCATCCTAGG 59.298 52.381 0.82 0.82 41.91 3.02
2069 2133 4.319177 GCTTATGCACCATCCTAGGTTAG 58.681 47.826 9.08 0.79 40.77 2.34
2070 2134 2.938956 ATGCACCATCCTAGGTTAGC 57.061 50.000 9.08 7.94 40.77 3.09
2071 2135 1.578897 TGCACCATCCTAGGTTAGCA 58.421 50.000 9.08 10.41 40.77 3.49
2072 2136 2.126882 TGCACCATCCTAGGTTAGCAT 58.873 47.619 9.08 0.00 40.77 3.79
2076 2140 4.020218 GCACCATCCTAGGTTAGCATATCA 60.020 45.833 9.08 0.00 40.77 2.15
2077 2141 5.513094 GCACCATCCTAGGTTAGCATATCAA 60.513 44.000 9.08 0.00 40.77 2.57
2078 2142 6.169094 CACCATCCTAGGTTAGCATATCAAG 58.831 44.000 9.08 0.00 40.77 3.02
2079 2143 5.249393 ACCATCCTAGGTTAGCATATCAAGG 59.751 44.000 9.08 0.00 39.34 3.61
2081 2145 6.351711 CCATCCTAGGTTAGCATATCAAGGAG 60.352 46.154 9.08 0.00 31.59 3.69
2082 2146 5.087323 TCCTAGGTTAGCATATCAAGGAGG 58.913 45.833 9.08 0.00 0.00 4.30
2084 2148 3.941629 AGGTTAGCATATCAAGGAGGGA 58.058 45.455 0.00 0.00 0.00 4.20
2085 2149 4.307259 AGGTTAGCATATCAAGGAGGGAA 58.693 43.478 0.00 0.00 0.00 3.97
2087 2151 2.947127 AGCATATCAAGGAGGGAAGC 57.053 50.000 0.00 0.00 0.00 3.86
2089 2153 1.202698 GCATATCAAGGAGGGAAGCGT 60.203 52.381 0.00 0.00 0.00 5.07
2090 2154 2.037251 GCATATCAAGGAGGGAAGCGTA 59.963 50.000 0.00 0.00 0.00 4.42
2091 2155 3.307059 GCATATCAAGGAGGGAAGCGTAT 60.307 47.826 0.00 0.00 0.00 3.06
2092 2156 4.499183 CATATCAAGGAGGGAAGCGTATC 58.501 47.826 0.00 0.00 0.00 2.24
2093 2157 1.120530 TCAAGGAGGGAAGCGTATCC 58.879 55.000 0.46 0.46 38.86 2.59
2094 2158 1.123928 CAAGGAGGGAAGCGTATCCT 58.876 55.000 8.27 0.56 44.12 3.24
2095 2159 1.069358 CAAGGAGGGAAGCGTATCCTC 59.931 57.143 11.35 11.35 41.36 3.71
2096 2160 0.558712 AGGAGGGAAGCGTATCCTCT 59.441 55.000 16.74 8.43 44.72 3.69
2097 2161 1.781529 AGGAGGGAAGCGTATCCTCTA 59.218 52.381 16.74 0.00 44.72 2.43
2098 2162 2.177233 AGGAGGGAAGCGTATCCTCTAA 59.823 50.000 16.74 0.00 44.72 2.10
2099 2163 2.296752 GGAGGGAAGCGTATCCTCTAAC 59.703 54.545 16.74 2.60 44.72 2.34
2100 2164 2.957006 GAGGGAAGCGTATCCTCTAACA 59.043 50.000 12.18 0.00 42.70 2.41
2101 2165 3.574826 GAGGGAAGCGTATCCTCTAACAT 59.425 47.826 12.18 0.00 42.70 2.71
2102 2166 3.574826 AGGGAAGCGTATCCTCTAACATC 59.425 47.826 8.27 0.00 39.57 3.06
2104 2168 3.574826 GGAAGCGTATCCTCTAACATCCT 59.425 47.826 1.84 0.00 36.50 3.24
2106 2170 3.833732 AGCGTATCCTCTAACATCCTCA 58.166 45.455 0.00 0.00 0.00 3.86
2108 2172 4.279671 AGCGTATCCTCTAACATCCTCAAG 59.720 45.833 0.00 0.00 0.00 3.02
2109 2173 4.559704 GCGTATCCTCTAACATCCTCAAGG 60.560 50.000 0.00 0.00 0.00 3.61
2110 2174 4.021894 CGTATCCTCTAACATCCTCAAGGG 60.022 50.000 0.00 0.00 35.41 3.95
2120 2184 1.639722 TCCTCAAGGGATGTCACGAA 58.360 50.000 0.00 0.00 39.58 3.85
2121 2185 1.550524 TCCTCAAGGGATGTCACGAAG 59.449 52.381 0.00 0.00 39.58 3.79
2125 2189 4.383118 CCTCAAGGGATGTCACGAAGTTAT 60.383 45.833 0.00 0.00 35.94 1.89
2126 2190 5.163447 CCTCAAGGGATGTCACGAAGTTATA 60.163 44.000 0.00 0.00 35.94 0.98
2130 2194 4.954202 AGGGATGTCACGAAGTTATAGTGA 59.046 41.667 0.00 4.73 41.61 3.41
2131 2195 5.421056 AGGGATGTCACGAAGTTATAGTGAA 59.579 40.000 9.10 3.09 45.04 3.18
2132 2196 6.070995 AGGGATGTCACGAAGTTATAGTGAAA 60.071 38.462 9.10 5.69 45.04 2.69
2133 2197 6.761714 GGGATGTCACGAAGTTATAGTGAAAT 59.238 38.462 9.67 9.67 45.04 2.17
2134 2198 7.254455 GGGATGTCACGAAGTTATAGTGAAATG 60.254 40.741 13.05 0.00 45.04 2.32
2136 2200 7.812309 TGTCACGAAGTTATAGTGAAATGAG 57.188 36.000 9.10 0.00 45.04 2.90
2138 2202 7.328493 TGTCACGAAGTTATAGTGAAATGAGTG 59.672 37.037 9.10 0.00 45.04 3.51
2139 2203 7.328737 GTCACGAAGTTATAGTGAAATGAGTGT 59.671 37.037 9.10 0.00 45.04 3.55
2143 2207 9.135843 CGAAGTTATAGTGAAATGAGTGTGTAA 57.864 33.333 0.00 0.00 0.00 2.41
2146 2210 8.936864 AGTTATAGTGAAATGAGTGTGTAAAGC 58.063 33.333 0.00 0.00 0.00 3.51
2147 2211 8.717821 GTTATAGTGAAATGAGTGTGTAAAGCA 58.282 33.333 0.00 0.00 0.00 3.91
2148 2212 7.744087 ATAGTGAAATGAGTGTGTAAAGCAA 57.256 32.000 0.00 0.00 0.00 3.91
2149 2213 6.449635 AGTGAAATGAGTGTGTAAAGCAAA 57.550 33.333 0.00 0.00 0.00 3.68
2150 2214 6.498304 AGTGAAATGAGTGTGTAAAGCAAAG 58.502 36.000 0.00 0.00 0.00 2.77
2151 2215 6.318648 AGTGAAATGAGTGTGTAAAGCAAAGA 59.681 34.615 0.00 0.00 0.00 2.52
2152 2216 6.972328 GTGAAATGAGTGTGTAAAGCAAAGAA 59.028 34.615 0.00 0.00 0.00 2.52
2153 2217 7.166473 GTGAAATGAGTGTGTAAAGCAAAGAAG 59.834 37.037 0.00 0.00 0.00 2.85
2155 2219 3.882888 TGAGTGTGTAAAGCAAAGAAGGG 59.117 43.478 0.00 0.00 0.00 3.95
2156 2220 4.134563 GAGTGTGTAAAGCAAAGAAGGGA 58.865 43.478 0.00 0.00 0.00 4.20
2157 2221 4.729868 AGTGTGTAAAGCAAAGAAGGGAT 58.270 39.130 0.00 0.00 0.00 3.85
2159 2223 4.278419 GTGTGTAAAGCAAAGAAGGGATGT 59.722 41.667 0.00 0.00 0.00 3.06
2161 2225 4.518970 GTGTAAAGCAAAGAAGGGATGTGA 59.481 41.667 0.00 0.00 0.00 3.58
2163 2227 2.503895 AGCAAAGAAGGGATGTGAGG 57.496 50.000 0.00 0.00 0.00 3.86
2164 2228 1.005215 AGCAAAGAAGGGATGTGAGGG 59.995 52.381 0.00 0.00 0.00 4.30
2165 2229 1.272147 GCAAAGAAGGGATGTGAGGGT 60.272 52.381 0.00 0.00 0.00 4.34
2166 2230 2.819348 GCAAAGAAGGGATGTGAGGGTT 60.819 50.000 0.00 0.00 0.00 4.11
2168 2232 4.010349 CAAAGAAGGGATGTGAGGGTTAC 58.990 47.826 0.00 0.00 0.00 2.50
2169 2233 3.207044 AGAAGGGATGTGAGGGTTACT 57.793 47.619 0.00 0.00 0.00 2.24
2170 2234 2.840651 AGAAGGGATGTGAGGGTTACTG 59.159 50.000 0.00 0.00 0.00 2.74
2171 2235 2.344093 AGGGATGTGAGGGTTACTGT 57.656 50.000 0.00 0.00 0.00 3.55
2172 2236 3.484953 AGGGATGTGAGGGTTACTGTA 57.515 47.619 0.00 0.00 0.00 2.74
2173 2237 3.375699 AGGGATGTGAGGGTTACTGTAG 58.624 50.000 0.00 0.00 0.00 2.74
2174 2238 2.158943 GGGATGTGAGGGTTACTGTAGC 60.159 54.545 0.00 0.00 0.00 3.58
2175 2239 2.500098 GGATGTGAGGGTTACTGTAGCA 59.500 50.000 4.08 0.00 0.00 3.49
2178 2242 2.969950 TGTGAGGGTTACTGTAGCAACT 59.030 45.455 4.08 1.54 0.00 3.16
2179 2243 4.154176 TGTGAGGGTTACTGTAGCAACTA 58.846 43.478 4.08 0.00 0.00 2.24
2180 2244 4.589798 TGTGAGGGTTACTGTAGCAACTAA 59.410 41.667 4.08 0.00 0.00 2.24
2181 2245 5.247564 TGTGAGGGTTACTGTAGCAACTAAT 59.752 40.000 4.08 0.00 0.00 1.73
2182 2246 5.581085 GTGAGGGTTACTGTAGCAACTAATG 59.419 44.000 4.08 0.00 0.00 1.90
2183 2247 5.247564 TGAGGGTTACTGTAGCAACTAATGT 59.752 40.000 4.08 0.00 0.00 2.71
2184 2248 5.731591 AGGGTTACTGTAGCAACTAATGTC 58.268 41.667 4.08 0.00 0.00 3.06
2186 2250 5.935789 GGGTTACTGTAGCAACTAATGTCAA 59.064 40.000 4.08 0.00 0.00 3.18
2187 2251 6.092259 GGGTTACTGTAGCAACTAATGTCAAG 59.908 42.308 4.08 0.00 0.00 3.02
2189 2253 7.172703 GGTTACTGTAGCAACTAATGTCAAGTT 59.827 37.037 4.08 0.00 37.67 2.66
2190 2254 9.199982 GTTACTGTAGCAACTAATGTCAAGTTA 57.800 33.333 0.00 0.00 35.44 2.24
2191 2255 7.653767 ACTGTAGCAACTAATGTCAAGTTAC 57.346 36.000 0.00 0.00 35.44 2.50
2193 2257 7.385205 ACTGTAGCAACTAATGTCAAGTTACTG 59.615 37.037 1.78 0.00 35.44 2.74
2194 2258 7.214381 TGTAGCAACTAATGTCAAGTTACTGT 58.786 34.615 1.78 0.00 35.44 3.55
2195 2259 8.361889 TGTAGCAACTAATGTCAAGTTACTGTA 58.638 33.333 1.78 0.00 35.44 2.74
2196 2260 7.891183 AGCAACTAATGTCAAGTTACTGTAG 57.109 36.000 0.00 0.00 35.44 2.74
2197 2261 6.369065 AGCAACTAATGTCAAGTTACTGTAGC 59.631 38.462 0.00 0.00 35.44 3.58
2198 2262 6.147164 GCAACTAATGTCAAGTTACTGTAGCA 59.853 38.462 4.49 0.00 35.44 3.49
2199 2263 7.148407 GCAACTAATGTCAAGTTACTGTAGCAT 60.148 37.037 4.49 0.00 35.44 3.79
2200 2264 7.834068 ACTAATGTCAAGTTACTGTAGCATG 57.166 36.000 4.49 2.76 0.00 4.06
2201 2265 7.386851 ACTAATGTCAAGTTACTGTAGCATGT 58.613 34.615 4.49 0.00 0.00 3.21
2202 2266 8.528643 ACTAATGTCAAGTTACTGTAGCATGTA 58.471 33.333 4.49 0.00 0.00 2.29
2203 2267 7.596749 AATGTCAAGTTACTGTAGCATGTAC 57.403 36.000 4.49 4.26 0.00 2.90
2204 2268 6.091718 TGTCAAGTTACTGTAGCATGTACA 57.908 37.500 0.00 0.00 0.00 2.90
2205 2269 6.517605 TGTCAAGTTACTGTAGCATGTACAA 58.482 36.000 0.00 0.00 0.00 2.41
2206 2270 6.987404 TGTCAAGTTACTGTAGCATGTACAAA 59.013 34.615 0.00 1.32 0.00 2.83
2209 2273 9.062524 TCAAGTTACTGTAGCATGTACAAAAAT 57.937 29.630 0.00 0.00 0.00 1.82
2328 2779 9.605951 AATCATTTTAGGCTTAACCATATGGAT 57.394 29.630 28.77 19.22 43.14 3.41
2329 2780 8.408043 TCATTTTAGGCTTAACCATATGGATG 57.592 34.615 28.77 15.45 43.14 3.51
2331 2782 7.581213 TTTTAGGCTTAACCATATGGATGTG 57.419 36.000 28.77 13.95 43.14 3.21
2332 2783 6.508030 TTAGGCTTAACCATATGGATGTGA 57.492 37.500 28.77 8.66 43.14 3.58
2333 2784 5.387113 AGGCTTAACCATATGGATGTGAA 57.613 39.130 28.77 12.28 43.14 3.18
2335 2786 5.132648 AGGCTTAACCATATGGATGTGAAGA 59.867 40.000 28.77 0.00 43.14 2.87
2336 2787 5.827797 GGCTTAACCATATGGATGTGAAGAA 59.172 40.000 28.77 5.67 38.86 2.52
2337 2788 6.016777 GGCTTAACCATATGGATGTGAAGAAG 60.017 42.308 28.77 15.51 38.86 2.85
2340 2791 4.047166 ACCATATGGATGTGAAGAAGGGA 58.953 43.478 28.77 0.00 38.94 4.20
2343 2794 5.457197 CCATATGGATGTGAAGAAGGGATGT 60.457 44.000 17.49 0.00 37.39 3.06
2344 2795 3.634397 TGGATGTGAAGAAGGGATGTC 57.366 47.619 0.00 0.00 0.00 3.06
2345 2796 2.912295 TGGATGTGAAGAAGGGATGTCA 59.088 45.455 0.00 0.00 0.00 3.58
2346 2797 3.274288 GGATGTGAAGAAGGGATGTCAC 58.726 50.000 0.00 0.00 40.64 3.67
2347 2798 2.455674 TGTGAAGAAGGGATGTCACG 57.544 50.000 0.00 0.00 42.66 4.35
2352 2803 3.517901 TGAAGAAGGGATGTCACGGTTAT 59.482 43.478 0.00 0.00 0.00 1.89
2353 2804 4.019681 TGAAGAAGGGATGTCACGGTTATT 60.020 41.667 0.00 0.00 0.00 1.40
2355 2806 3.263425 AGAAGGGATGTCACGGTTATTGT 59.737 43.478 0.00 0.00 0.00 2.71
2356 2807 4.468510 AGAAGGGATGTCACGGTTATTGTA 59.531 41.667 0.00 0.00 0.00 2.41
2357 2808 4.829872 AGGGATGTCACGGTTATTGTAA 57.170 40.909 0.00 0.00 0.00 2.41
2359 2810 4.224370 AGGGATGTCACGGTTATTGTAACT 59.776 41.667 0.51 0.00 0.00 2.24
2360 2811 4.939439 GGGATGTCACGGTTATTGTAACTT 59.061 41.667 0.51 0.00 0.00 2.66
2361 2812 6.070653 AGGGATGTCACGGTTATTGTAACTTA 60.071 38.462 0.51 0.00 0.00 2.24
2363 2814 6.237648 GGATGTCACGGTTATTGTAACTTACG 60.238 42.308 0.51 0.00 0.00 3.18
2364 2815 5.527951 TGTCACGGTTATTGTAACTTACGT 58.472 37.500 0.00 0.00 0.00 3.57
2368 2819 5.527951 ACGGTTATTGTAACTTACGTGACA 58.472 37.500 0.00 0.00 32.53 3.58
2369 2820 6.158598 ACGGTTATTGTAACTTACGTGACAT 58.841 36.000 0.00 0.00 34.48 3.06
2370 2821 6.308766 ACGGTTATTGTAACTTACGTGACATC 59.691 38.462 0.00 0.00 34.48 3.06
2371 2822 6.529125 CGGTTATTGTAACTTACGTGACATCT 59.471 38.462 0.00 0.00 34.48 2.90
2373 2824 8.715088 GGTTATTGTAACTTACGTGACATCTTT 58.285 33.333 0.00 0.00 34.48 2.52
2376 2827 7.773864 TTGTAACTTACGTGACATCTTTTGA 57.226 32.000 0.00 0.00 34.48 2.69
2377 2828 7.402811 TGTAACTTACGTGACATCTTTTGAG 57.597 36.000 0.00 0.00 29.28 3.02
2392 2843 6.240549 TCTTTTGAGGATGTTAGAGGATCC 57.759 41.667 2.48 2.48 38.83 3.36
2393 2844 4.672587 TTTGAGGATGTTAGAGGATCCG 57.327 45.455 5.98 0.00 42.73 4.18
2394 2845 2.598565 TGAGGATGTTAGAGGATCCGG 58.401 52.381 5.98 0.00 42.73 5.14
2395 2846 2.091278 TGAGGATGTTAGAGGATCCGGT 60.091 50.000 5.98 0.00 42.73 5.28
2397 2848 2.966516 AGGATGTTAGAGGATCCGGTTC 59.033 50.000 5.98 1.67 42.73 3.62
2398 2849 2.037381 GGATGTTAGAGGATCCGGTTCC 59.963 54.545 22.05 22.05 33.66 3.62
2403 2902 0.042731 AGAGGATCCGGTTCCCTCAA 59.957 55.000 28.05 0.58 46.74 3.02
2404 2903 0.466124 GAGGATCCGGTTCCCTCAAG 59.534 60.000 25.10 0.00 44.42 3.02
2431 2930 2.821366 GGGCGTCATGAGCAGGTG 60.821 66.667 15.83 0.00 36.08 4.00
2432 2931 2.821366 GGCGTCATGAGCAGGTGG 60.821 66.667 15.83 0.00 36.08 4.61
2433 2932 2.821366 GCGTCATGAGCAGGTGGG 60.821 66.667 0.00 0.00 34.19 4.61
2467 2966 9.617975 CAGAATCAGTTCCAAAGTTCTTTTATC 57.382 33.333 0.00 0.00 34.81 1.75
2498 3243 3.632145 CGCACCTAGCCAAATTCCTTTAT 59.368 43.478 0.00 0.00 41.38 1.40
2593 3339 0.401738 TTCCCTTCAGCTTCACCCTG 59.598 55.000 0.00 0.00 0.00 4.45
2594 3340 1.001641 CCCTTCAGCTTCACCCTGG 60.002 63.158 0.00 0.00 0.00 4.45
2630 3376 4.289101 TCGACGACCTCCACCCCA 62.289 66.667 0.00 0.00 0.00 4.96
2650 3396 2.403378 GCACCGCCTCCGCAAATTA 61.403 57.895 0.00 0.00 34.03 1.40
2725 3471 4.663444 CGAATCTCTCGGCCCATC 57.337 61.111 0.00 0.00 44.20 3.51
2733 3479 1.341531 CTCTCGGCCCATCGTAGATTT 59.658 52.381 0.00 0.00 45.12 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 57 1.829533 GCAATGCATCACGGGGGAT 60.830 57.895 0.00 0.00 0.00 3.85
99 101 0.179067 TGTCGTGGGTCAGGTGAAAC 60.179 55.000 0.00 0.00 0.00 2.78
154 156 0.736636 TCGATCGTGTAAGCGGTCAT 59.263 50.000 15.94 0.00 41.63 3.06
159 161 1.002792 TGGAGATCGATCGTGTAAGCG 60.003 52.381 19.33 0.00 0.00 4.68
160 162 2.776312 TGGAGATCGATCGTGTAAGC 57.224 50.000 19.33 0.00 0.00 3.09
161 163 8.021396 TGTAATTATGGAGATCGATCGTGTAAG 58.979 37.037 19.33 0.00 0.00 2.34
238 243 4.713553 TGATGCTACCAGAGTGTCAAAAA 58.286 39.130 0.00 0.00 0.00 1.94
239 244 4.350368 TGATGCTACCAGAGTGTCAAAA 57.650 40.909 0.00 0.00 0.00 2.44
240 245 4.350368 TTGATGCTACCAGAGTGTCAAA 57.650 40.909 0.00 0.00 31.77 2.69
241 246 4.350368 TTTGATGCTACCAGAGTGTCAA 57.650 40.909 0.00 0.00 32.40 3.18
242 247 4.350368 TTTTGATGCTACCAGAGTGTCA 57.650 40.909 0.00 0.00 0.00 3.58
292 297 9.520204 CGGCTTCACATCAAAATATAAGATTTT 57.480 29.630 0.00 0.00 0.00 1.82
293 298 8.686334 ACGGCTTCACATCAAAATATAAGATTT 58.314 29.630 0.00 0.00 0.00 2.17
294 299 8.131100 CACGGCTTCACATCAAAATATAAGATT 58.869 33.333 0.00 0.00 0.00 2.40
295 300 7.498900 TCACGGCTTCACATCAAAATATAAGAT 59.501 33.333 0.00 0.00 0.00 2.40
296 301 6.821160 TCACGGCTTCACATCAAAATATAAGA 59.179 34.615 0.00 0.00 0.00 2.10
297 302 7.015226 TCACGGCTTCACATCAAAATATAAG 57.985 36.000 0.00 0.00 0.00 1.73
298 303 6.993786 TCACGGCTTCACATCAAAATATAA 57.006 33.333 0.00 0.00 0.00 0.98
299 304 6.038161 CCTTCACGGCTTCACATCAAAATATA 59.962 38.462 0.00 0.00 0.00 0.86
300 305 5.163622 CCTTCACGGCTTCACATCAAAATAT 60.164 40.000 0.00 0.00 0.00 1.28
301 306 4.155826 CCTTCACGGCTTCACATCAAAATA 59.844 41.667 0.00 0.00 0.00 1.40
302 307 3.057315 CCTTCACGGCTTCACATCAAAAT 60.057 43.478 0.00 0.00 0.00 1.82
303 308 2.293122 CCTTCACGGCTTCACATCAAAA 59.707 45.455 0.00 0.00 0.00 2.44
304 309 1.879380 CCTTCACGGCTTCACATCAAA 59.121 47.619 0.00 0.00 0.00 2.69
305 310 1.522668 CCTTCACGGCTTCACATCAA 58.477 50.000 0.00 0.00 0.00 2.57
306 311 0.321564 CCCTTCACGGCTTCACATCA 60.322 55.000 0.00 0.00 0.00 3.07
307 312 0.036388 TCCCTTCACGGCTTCACATC 60.036 55.000 0.00 0.00 0.00 3.06
308 313 0.400213 TTCCCTTCACGGCTTCACAT 59.600 50.000 0.00 0.00 0.00 3.21
309 314 0.400213 ATTCCCTTCACGGCTTCACA 59.600 50.000 0.00 0.00 0.00 3.58
310 315 2.396590 TATTCCCTTCACGGCTTCAC 57.603 50.000 0.00 0.00 0.00 3.18
311 316 2.238646 ACATATTCCCTTCACGGCTTCA 59.761 45.455 0.00 0.00 0.00 3.02
312 317 2.872858 GACATATTCCCTTCACGGCTTC 59.127 50.000 0.00 0.00 0.00 3.86
313 318 2.421529 GGACATATTCCCTTCACGGCTT 60.422 50.000 0.00 0.00 38.70 4.35
314 319 1.141053 GGACATATTCCCTTCACGGCT 59.859 52.381 0.00 0.00 38.70 5.52
315 320 1.594331 GGACATATTCCCTTCACGGC 58.406 55.000 0.00 0.00 38.70 5.68
324 329 8.672823 AACCGAGTAATTTAAGGACATATTCC 57.327 34.615 0.00 0.00 46.33 3.01
326 331 9.675464 TGAAACCGAGTAATTTAAGGACATATT 57.325 29.630 0.00 0.00 0.00 1.28
327 332 9.675464 TTGAAACCGAGTAATTTAAGGACATAT 57.325 29.630 0.00 0.00 0.00 1.78
328 333 9.675464 ATTGAAACCGAGTAATTTAAGGACATA 57.325 29.630 0.00 0.00 0.00 2.29
329 334 7.989416 TTGAAACCGAGTAATTTAAGGACAT 57.011 32.000 0.00 0.00 0.00 3.06
330 335 7.989416 ATTGAAACCGAGTAATTTAAGGACA 57.011 32.000 0.00 0.00 0.00 4.02
338 343 9.620660 GTGTTGAATAATTGAAACCGAGTAATT 57.379 29.630 0.00 0.00 0.00 1.40
339 344 8.788806 TGTGTTGAATAATTGAAACCGAGTAAT 58.211 29.630 0.00 0.00 0.00 1.89
350 355 7.040548 TGTGCTCAGATTGTGTTGAATAATTGA 60.041 33.333 0.00 0.00 0.00 2.57
354 359 6.127925 GGATGTGCTCAGATTGTGTTGAATAA 60.128 38.462 0.00 0.00 0.00 1.40
355 360 5.355071 GGATGTGCTCAGATTGTGTTGAATA 59.645 40.000 0.00 0.00 0.00 1.75
365 370 4.290093 TGGTACTAGGATGTGCTCAGATT 58.710 43.478 0.00 0.00 0.00 2.40
368 373 3.181471 CCTTGGTACTAGGATGTGCTCAG 60.181 52.174 8.39 0.00 34.56 3.35
369 374 2.766263 CCTTGGTACTAGGATGTGCTCA 59.234 50.000 8.39 0.00 34.56 4.26
370 375 2.766828 ACCTTGGTACTAGGATGTGCTC 59.233 50.000 17.81 0.00 36.58 4.26
371 376 2.834113 ACCTTGGTACTAGGATGTGCT 58.166 47.619 17.81 0.00 36.58 4.40
372 377 3.532542 GAACCTTGGTACTAGGATGTGC 58.467 50.000 17.81 0.00 36.58 4.57
374 379 3.705051 TCGAACCTTGGTACTAGGATGT 58.295 45.455 17.81 5.98 36.58 3.06
375 380 4.430908 GTTCGAACCTTGGTACTAGGATG 58.569 47.826 17.68 9.12 36.58 3.51
376 381 3.450096 GGTTCGAACCTTGGTACTAGGAT 59.550 47.826 34.98 8.75 45.75 3.24
377 382 2.827921 GGTTCGAACCTTGGTACTAGGA 59.172 50.000 34.98 0.00 45.75 2.94
378 383 3.242549 GGTTCGAACCTTGGTACTAGG 57.757 52.381 34.98 11.54 45.75 3.02
391 396 2.598394 ACCCCGACGAGGTTCGAA 60.598 61.111 5.38 0.00 43.74 3.71
392 397 3.058160 GACCCCGACGAGGTTCGA 61.058 66.667 1.37 0.00 43.74 3.71
393 398 4.471726 CGACCCCGACGAGGTTCG 62.472 72.222 1.37 5.25 46.93 3.95
394 399 1.941999 ATTCGACCCCGACGAGGTTC 61.942 60.000 1.37 0.00 45.50 3.62
395 400 1.538687 AATTCGACCCCGACGAGGTT 61.539 55.000 1.37 0.00 45.50 3.50
396 401 1.538687 AAATTCGACCCCGACGAGGT 61.539 55.000 0.00 0.00 45.50 3.85
397 402 0.390735 AAAATTCGACCCCGACGAGG 60.391 55.000 0.00 0.00 45.50 4.63
399 404 3.610637 AAAAATTCGACCCCGACGA 57.389 47.368 0.00 0.00 45.50 4.20
414 419 1.988293 TCCGAATGAGGCACCAAAAA 58.012 45.000 0.00 0.00 0.00 1.94
415 420 2.214376 ATCCGAATGAGGCACCAAAA 57.786 45.000 0.00 0.00 0.00 2.44
416 421 2.421388 CCTATCCGAATGAGGCACCAAA 60.421 50.000 0.00 0.00 0.00 3.28
417 422 1.140852 CCTATCCGAATGAGGCACCAA 59.859 52.381 0.00 0.00 0.00 3.67
418 423 0.758734 CCTATCCGAATGAGGCACCA 59.241 55.000 0.00 0.00 0.00 4.17
419 424 3.614399 CCTATCCGAATGAGGCACC 57.386 57.895 0.00 0.00 0.00 5.01
423 428 3.323403 AGAAGAAGCCTATCCGAATGAGG 59.677 47.826 0.00 0.00 0.00 3.86
424 429 4.599047 AGAAGAAGCCTATCCGAATGAG 57.401 45.455 0.00 0.00 0.00 2.90
425 430 7.776618 TTATAGAAGAAGCCTATCCGAATGA 57.223 36.000 0.00 0.00 0.00 2.57
426 431 8.833231 TTTTATAGAAGAAGCCTATCCGAATG 57.167 34.615 0.00 0.00 0.00 2.67
447 452 9.880157 GACACTAACACCTAGGACATAATTTTA 57.120 33.333 17.98 0.00 31.14 1.52
448 453 7.827729 GGACACTAACACCTAGGACATAATTTT 59.172 37.037 17.98 0.00 31.14 1.82
449 454 7.037873 TGGACACTAACACCTAGGACATAATTT 60.038 37.037 17.98 0.03 31.14 1.82
450 455 6.442564 TGGACACTAACACCTAGGACATAATT 59.557 38.462 17.98 2.73 31.14 1.40
451 456 5.962031 TGGACACTAACACCTAGGACATAAT 59.038 40.000 17.98 0.00 31.14 1.28
452 457 5.335261 TGGACACTAACACCTAGGACATAA 58.665 41.667 17.98 0.00 31.14 1.90
453 458 4.938028 TGGACACTAACACCTAGGACATA 58.062 43.478 17.98 3.96 31.14 2.29
454 459 3.769844 CTGGACACTAACACCTAGGACAT 59.230 47.826 17.98 2.85 31.14 3.06
455 460 3.162666 CTGGACACTAACACCTAGGACA 58.837 50.000 17.98 0.00 31.14 4.02
456 461 3.056749 CACTGGACACTAACACCTAGGAC 60.057 52.174 17.98 0.00 31.14 3.85
457 462 3.162666 CACTGGACACTAACACCTAGGA 58.837 50.000 17.98 0.00 31.14 2.94
458 463 3.162666 TCACTGGACACTAACACCTAGG 58.837 50.000 7.41 7.41 31.14 3.02
459 464 4.707448 AGATCACTGGACACTAACACCTAG 59.293 45.833 0.00 0.00 0.00 3.02
460 465 4.673968 AGATCACTGGACACTAACACCTA 58.326 43.478 0.00 0.00 0.00 3.08
461 466 3.511477 AGATCACTGGACACTAACACCT 58.489 45.455 0.00 0.00 0.00 4.00
462 467 3.963428 AGATCACTGGACACTAACACC 57.037 47.619 0.00 0.00 0.00 4.16
463 468 7.907214 AAATAAGATCACTGGACACTAACAC 57.093 36.000 0.00 0.00 0.00 3.32
464 469 8.918202 AAAAATAAGATCACTGGACACTAACA 57.082 30.769 0.00 0.00 0.00 2.41
489 494 5.299028 TCATGTGCTCAGCTTGTAAGAAAAA 59.701 36.000 0.00 0.00 0.00 1.94
490 495 4.821260 TCATGTGCTCAGCTTGTAAGAAAA 59.179 37.500 0.00 0.00 0.00 2.29
491 496 4.214119 GTCATGTGCTCAGCTTGTAAGAAA 59.786 41.667 0.00 0.00 0.00 2.52
492 497 3.748048 GTCATGTGCTCAGCTTGTAAGAA 59.252 43.478 0.00 0.00 0.00 2.52
493 498 3.244181 TGTCATGTGCTCAGCTTGTAAGA 60.244 43.478 0.00 0.00 0.00 2.10
494 499 3.069289 TGTCATGTGCTCAGCTTGTAAG 58.931 45.455 0.00 0.00 0.00 2.34
495 500 3.124578 TGTCATGTGCTCAGCTTGTAA 57.875 42.857 0.00 0.00 0.00 2.41
496 501 2.837532 TGTCATGTGCTCAGCTTGTA 57.162 45.000 0.00 0.00 0.00 2.41
497 502 1.971481 TTGTCATGTGCTCAGCTTGT 58.029 45.000 0.00 0.00 0.00 3.16
498 503 3.358707 TTTTGTCATGTGCTCAGCTTG 57.641 42.857 0.00 0.00 0.00 4.01
499 504 3.859627 GCATTTTGTCATGTGCTCAGCTT 60.860 43.478 0.00 0.00 34.85 3.74
500 505 2.352421 GCATTTTGTCATGTGCTCAGCT 60.352 45.455 0.00 0.00 34.85 4.24
501 506 1.990563 GCATTTTGTCATGTGCTCAGC 59.009 47.619 0.00 0.00 34.85 4.26
502 507 2.230508 AGGCATTTTGTCATGTGCTCAG 59.769 45.455 4.03 0.00 37.70 3.35
515 520 4.331968 TGTTTCCATCGAGTAGGCATTTT 58.668 39.130 0.00 0.00 0.00 1.82
560 568 5.533154 CAGGCAGATGTAGTAGTACTAGCTT 59.467 44.000 10.38 4.09 30.12 3.74
620 635 8.946085 GTCTCTTTCAAGAAATTTTGGGTTTTT 58.054 29.630 0.00 0.00 34.03 1.94
621 636 8.100164 TGTCTCTTTCAAGAAATTTTGGGTTTT 58.900 29.630 0.00 0.00 34.03 2.43
622 637 7.549134 GTGTCTCTTTCAAGAAATTTTGGGTTT 59.451 33.333 0.00 0.00 34.03 3.27
623 638 7.041721 GTGTCTCTTTCAAGAAATTTTGGGTT 58.958 34.615 0.00 0.00 34.03 4.11
624 639 6.573434 GTGTCTCTTTCAAGAAATTTTGGGT 58.427 36.000 0.00 0.00 34.03 4.51
625 640 5.687285 CGTGTCTCTTTCAAGAAATTTTGGG 59.313 40.000 0.00 0.00 34.03 4.12
626 641 6.494842 TCGTGTCTCTTTCAAGAAATTTTGG 58.505 36.000 0.00 0.00 34.03 3.28
637 652 0.033504 GGGCACTCGTGTCTCTTTCA 59.966 55.000 1.37 0.00 35.13 2.69
694 709 4.820173 ACCTTCTTACCCTTTTCTTCGTTG 59.180 41.667 0.00 0.00 0.00 4.10
706 721 3.782656 TTGACTTGGACCTTCTTACCC 57.217 47.619 0.00 0.00 0.00 3.69
717 735 1.144969 GCGTTCGTGATTGACTTGGA 58.855 50.000 0.00 0.00 0.00 3.53
744 762 2.815308 CTGCTAGGGCTACGGGTG 59.185 66.667 0.00 0.00 39.59 4.61
745 763 3.155167 GCTGCTAGGGCTACGGGT 61.155 66.667 0.00 0.00 39.59 5.28
746 764 3.930012 GGCTGCTAGGGCTACGGG 61.930 72.222 0.00 0.00 39.59 5.28
747 765 2.650813 CTTGGCTGCTAGGGCTACGG 62.651 65.000 0.00 0.00 39.59 4.02
748 766 1.227380 CTTGGCTGCTAGGGCTACG 60.227 63.158 0.00 0.00 39.59 3.51
749 767 0.179070 GACTTGGCTGCTAGGGCTAC 60.179 60.000 0.00 0.00 39.59 3.58
750 768 0.617535 TGACTTGGCTGCTAGGGCTA 60.618 55.000 2.13 0.00 39.59 3.93
751 769 1.492133 TTGACTTGGCTGCTAGGGCT 61.492 55.000 2.13 0.00 39.59 5.19
752 770 1.002134 TTGACTTGGCTGCTAGGGC 60.002 57.895 0.00 0.00 39.26 5.19
753 771 0.393537 CCTTGACTTGGCTGCTAGGG 60.394 60.000 0.00 0.00 0.00 3.53
754 772 0.326264 ACCTTGACTTGGCTGCTAGG 59.674 55.000 0.00 0.00 0.00 3.02
755 773 2.079925 GAACCTTGACTTGGCTGCTAG 58.920 52.381 0.00 0.00 0.00 3.42
796 814 5.065346 GCTACTTGGGTTTCTTTCTAGATGC 59.935 44.000 0.00 0.00 0.00 3.91
817 835 3.350612 GCGCGTTGGTTGGTGCTA 61.351 61.111 8.43 0.00 36.76 3.49
833 852 1.181098 ATGGCTGGTGTCAAGTTGGC 61.181 55.000 0.00 0.00 0.00 4.52
887 910 0.324943 AAAGCTACCGATGCAGTGGT 59.675 50.000 16.06 16.06 42.34 4.16
893 916 3.764885 AATGTTCAAAGCTACCGATGC 57.235 42.857 0.00 0.00 0.00 3.91
901 924 5.663456 TGCAGAAAGAAAATGTTCAAAGCT 58.337 33.333 0.00 0.00 36.09 3.74
936 959 5.391736 GCTTCTTACAGCACGTAGAAGTAGA 60.392 44.000 19.47 4.49 39.83 2.59
979 1019 0.685785 CTCTCTCCACCTGCTGGCTA 60.686 60.000 9.95 0.00 40.39 3.93
992 1033 1.580815 GTAGCTTGCCATGCTCTCTC 58.419 55.000 8.52 0.00 41.46 3.20
1209 1250 1.298993 CAGGATCAGCACCAGCAGT 59.701 57.895 0.00 0.00 45.49 4.40
1396 1437 4.157120 GTACACCCCGATGCGCCT 62.157 66.667 4.18 0.00 0.00 5.52
1470 1511 3.432051 CTGGTAGAGCGCCGGGAAG 62.432 68.421 2.29 0.00 0.00 3.46
1725 1766 0.111061 TGAAGGTGCAGCTGTTGGAT 59.889 50.000 20.97 1.43 0.00 3.41
1769 1813 0.667184 GCACGGCTCAAATGGTTTGG 60.667 55.000 2.92 0.00 40.98 3.28
1875 1922 1.621992 TCTCTACCATCTGCCGATCC 58.378 55.000 0.00 0.00 0.00 3.36
1924 1971 3.976793 ATGAATATGCGAGCCAAACTG 57.023 42.857 0.00 0.00 0.00 3.16
1925 1972 6.639632 AATAATGAATATGCGAGCCAAACT 57.360 33.333 0.00 0.00 0.00 2.66
1926 1973 7.698836 AAAATAATGAATATGCGAGCCAAAC 57.301 32.000 0.00 0.00 0.00 2.93
1982 2029 6.118170 TCTCCAGAGGAATTCATAGCAAAAG 58.882 40.000 7.93 0.00 0.00 2.27
1986 2033 4.964897 TCTTCTCCAGAGGAATTCATAGCA 59.035 41.667 7.93 0.00 0.00 3.49
1997 2044 3.645212 TGAGCCAATATCTTCTCCAGAGG 59.355 47.826 0.00 0.00 33.87 3.69
2026 2087 3.129638 GCCTGAAAACCACACACAAACTA 59.870 43.478 0.00 0.00 0.00 2.24
2030 2091 1.846007 AGCCTGAAAACCACACACAA 58.154 45.000 0.00 0.00 0.00 3.33
2060 2124 4.223923 CCCTCCTTGATATGCTAACCTAGG 59.776 50.000 7.41 7.41 0.00 3.02
2061 2125 5.087323 TCCCTCCTTGATATGCTAACCTAG 58.913 45.833 0.00 0.00 0.00 3.02
2063 2127 3.941629 TCCCTCCTTGATATGCTAACCT 58.058 45.455 0.00 0.00 0.00 3.50
2065 2129 4.068599 GCTTCCCTCCTTGATATGCTAAC 58.931 47.826 0.00 0.00 0.00 2.34
2069 2133 1.202698 ACGCTTCCCTCCTTGATATGC 60.203 52.381 0.00 0.00 0.00 3.14
2070 2134 2.918712 ACGCTTCCCTCCTTGATATG 57.081 50.000 0.00 0.00 0.00 1.78
2071 2135 3.515901 GGATACGCTTCCCTCCTTGATAT 59.484 47.826 0.00 0.00 0.00 1.63
2072 2136 2.897969 GGATACGCTTCCCTCCTTGATA 59.102 50.000 0.00 0.00 0.00 2.15
2076 2140 1.415200 GAGGATACGCTTCCCTCCTT 58.585 55.000 0.00 0.00 40.35 3.36
2077 2141 3.135027 GAGGATACGCTTCCCTCCT 57.865 57.895 0.00 0.00 40.35 3.69
2084 2148 8.138231 CCTTGAGGATGTTAGAGGATACGCTT 62.138 46.154 0.00 0.00 40.33 4.68
2085 2149 6.731540 CCTTGAGGATGTTAGAGGATACGCT 61.732 48.000 0.00 0.00 44.19 5.07
2087 2151 4.021894 CCCTTGAGGATGTTAGAGGATACG 60.022 50.000 0.00 0.00 39.54 3.06
2089 2153 5.418692 TCCCTTGAGGATGTTAGAGGATA 57.581 43.478 0.00 0.00 40.93 2.59
2090 2154 4.286813 TCCCTTGAGGATGTTAGAGGAT 57.713 45.455 0.00 0.00 40.93 3.24
2091 2155 3.776731 TCCCTTGAGGATGTTAGAGGA 57.223 47.619 0.00 0.00 40.93 3.71
2102 2166 1.276421 ACTTCGTGACATCCCTTGAGG 59.724 52.381 0.00 0.00 0.00 3.86
2104 2168 4.819105 ATAACTTCGTGACATCCCTTGA 57.181 40.909 0.00 0.00 0.00 3.02
2106 2170 5.421056 TCACTATAACTTCGTGACATCCCTT 59.579 40.000 0.00 0.00 33.15 3.95
2108 2172 5.258456 TCACTATAACTTCGTGACATCCC 57.742 43.478 0.00 0.00 33.15 3.85
2109 2173 7.491372 TCATTTCACTATAACTTCGTGACATCC 59.509 37.037 0.00 0.00 37.40 3.51
2110 2174 8.407457 TCATTTCACTATAACTTCGTGACATC 57.593 34.615 0.00 0.00 37.40 3.06
2112 2176 7.328493 CACTCATTTCACTATAACTTCGTGACA 59.672 37.037 0.00 0.00 37.40 3.58
2113 2177 7.328737 ACACTCATTTCACTATAACTTCGTGAC 59.671 37.037 0.00 0.00 37.40 3.67
2115 2179 7.116376 ACACACTCATTTCACTATAACTTCGTG 59.884 37.037 0.00 0.00 0.00 4.35
2117 2181 7.582435 ACACACTCATTTCACTATAACTTCG 57.418 36.000 0.00 0.00 0.00 3.79
2120 2184 8.936864 GCTTTACACACTCATTTCACTATAACT 58.063 33.333 0.00 0.00 0.00 2.24
2121 2185 8.717821 TGCTTTACACACTCATTTCACTATAAC 58.282 33.333 0.00 0.00 0.00 1.89
2125 2189 7.497579 TCTTTGCTTTACACACTCATTTCACTA 59.502 33.333 0.00 0.00 0.00 2.74
2126 2190 6.318648 TCTTTGCTTTACACACTCATTTCACT 59.681 34.615 0.00 0.00 0.00 3.41
2130 2194 6.461509 CCCTTCTTTGCTTTACACACTCATTT 60.462 38.462 0.00 0.00 0.00 2.32
2131 2195 5.010012 CCCTTCTTTGCTTTACACACTCATT 59.990 40.000 0.00 0.00 0.00 2.57
2132 2196 4.520492 CCCTTCTTTGCTTTACACACTCAT 59.480 41.667 0.00 0.00 0.00 2.90
2133 2197 3.882888 CCCTTCTTTGCTTTACACACTCA 59.117 43.478 0.00 0.00 0.00 3.41
2134 2198 4.134563 TCCCTTCTTTGCTTTACACACTC 58.865 43.478 0.00 0.00 0.00 3.51
2136 2200 4.278419 ACATCCCTTCTTTGCTTTACACAC 59.722 41.667 0.00 0.00 0.00 3.82
2138 2202 4.518970 TCACATCCCTTCTTTGCTTTACAC 59.481 41.667 0.00 0.00 0.00 2.90
2139 2203 4.724399 TCACATCCCTTCTTTGCTTTACA 58.276 39.130 0.00 0.00 0.00 2.41
2143 2207 2.556114 CCCTCACATCCCTTCTTTGCTT 60.556 50.000 0.00 0.00 0.00 3.91
2146 2210 2.887151 ACCCTCACATCCCTTCTTTG 57.113 50.000 0.00 0.00 0.00 2.77
2147 2211 3.916989 AGTAACCCTCACATCCCTTCTTT 59.083 43.478 0.00 0.00 0.00 2.52
2148 2212 3.264450 CAGTAACCCTCACATCCCTTCTT 59.736 47.826 0.00 0.00 0.00 2.52
2149 2213 2.840651 CAGTAACCCTCACATCCCTTCT 59.159 50.000 0.00 0.00 0.00 2.85
2150 2214 2.572104 ACAGTAACCCTCACATCCCTTC 59.428 50.000 0.00 0.00 0.00 3.46
2151 2215 2.632537 ACAGTAACCCTCACATCCCTT 58.367 47.619 0.00 0.00 0.00 3.95
2152 2216 2.344093 ACAGTAACCCTCACATCCCT 57.656 50.000 0.00 0.00 0.00 4.20
2153 2217 2.158943 GCTACAGTAACCCTCACATCCC 60.159 54.545 0.00 0.00 0.00 3.85
2155 2219 3.887621 TGCTACAGTAACCCTCACATC 57.112 47.619 0.00 0.00 0.00 3.06
2156 2220 3.583086 AGTTGCTACAGTAACCCTCACAT 59.417 43.478 6.58 0.00 40.76 3.21
2157 2221 2.969950 AGTTGCTACAGTAACCCTCACA 59.030 45.455 6.58 0.00 40.76 3.58
2159 2223 5.247564 ACATTAGTTGCTACAGTAACCCTCA 59.752 40.000 6.58 0.00 40.76 3.86
2161 2225 5.247564 TGACATTAGTTGCTACAGTAACCCT 59.752 40.000 6.58 0.00 40.76 4.34
2163 2227 6.649557 ACTTGACATTAGTTGCTACAGTAACC 59.350 38.462 6.58 0.00 40.76 2.85
2164 2228 7.653767 ACTTGACATTAGTTGCTACAGTAAC 57.346 36.000 0.13 2.35 40.28 2.50
2165 2229 9.199982 GTAACTTGACATTAGTTGCTACAGTAA 57.800 33.333 0.13 0.00 36.56 2.24
2166 2230 8.582437 AGTAACTTGACATTAGTTGCTACAGTA 58.418 33.333 8.38 0.00 43.64 2.74
2168 2232 7.385205 ACAGTAACTTGACATTAGTTGCTACAG 59.615 37.037 9.45 2.84 43.63 2.74
2169 2233 7.214381 ACAGTAACTTGACATTAGTTGCTACA 58.786 34.615 9.45 0.00 43.63 2.74
2170 2234 7.653767 ACAGTAACTTGACATTAGTTGCTAC 57.346 36.000 9.45 0.00 43.63 3.58
2171 2235 7.544566 GCTACAGTAACTTGACATTAGTTGCTA 59.455 37.037 9.45 0.00 43.63 3.49
2172 2236 6.369065 GCTACAGTAACTTGACATTAGTTGCT 59.631 38.462 5.17 5.17 45.46 3.91
2173 2237 6.147164 TGCTACAGTAACTTGACATTAGTTGC 59.853 38.462 3.26 2.18 38.15 4.17
2174 2238 7.652300 TGCTACAGTAACTTGACATTAGTTG 57.348 36.000 3.26 0.00 36.56 3.16
2175 2239 7.878127 ACATGCTACAGTAACTTGACATTAGTT 59.122 33.333 4.33 0.00 39.13 2.24
2178 2242 8.308207 TGTACATGCTACAGTAACTTGACATTA 58.692 33.333 0.00 0.00 0.00 1.90
2179 2243 7.158697 TGTACATGCTACAGTAACTTGACATT 58.841 34.615 0.00 0.00 0.00 2.71
2180 2244 6.697395 TGTACATGCTACAGTAACTTGACAT 58.303 36.000 0.00 0.00 0.00 3.06
2181 2245 6.091718 TGTACATGCTACAGTAACTTGACA 57.908 37.500 0.00 2.66 0.00 3.58
2182 2246 7.416154 TTTGTACATGCTACAGTAACTTGAC 57.584 36.000 0.00 0.68 0.00 3.18
2183 2247 8.439993 TTTTTGTACATGCTACAGTAACTTGA 57.560 30.769 0.00 0.00 0.00 3.02
2302 2753 9.605951 ATCCATATGGTTAAGCCTAAAATGATT 57.394 29.630 21.28 0.00 38.35 2.57
2303 2754 9.028284 CATCCATATGGTTAAGCCTAAAATGAT 57.972 33.333 21.28 0.00 38.35 2.45
2304 2755 8.004215 ACATCCATATGGTTAAGCCTAAAATGA 58.996 33.333 21.28 0.00 37.43 2.57
2306 2757 8.004215 TCACATCCATATGGTTAAGCCTAAAAT 58.996 33.333 21.28 0.10 37.43 1.82
2307 2758 7.350382 TCACATCCATATGGTTAAGCCTAAAA 58.650 34.615 21.28 0.00 37.43 1.52
2308 2759 6.905736 TCACATCCATATGGTTAAGCCTAAA 58.094 36.000 21.28 0.00 37.43 1.85
2309 2760 6.508030 TCACATCCATATGGTTAAGCCTAA 57.492 37.500 21.28 0.00 37.43 2.69
2311 2762 5.132648 TCTTCACATCCATATGGTTAAGCCT 59.867 40.000 21.28 0.00 37.43 4.58
2312 2763 5.376625 TCTTCACATCCATATGGTTAAGCC 58.623 41.667 21.28 0.00 37.43 4.35
2313 2764 6.016777 CCTTCTTCACATCCATATGGTTAAGC 60.017 42.308 21.28 0.00 37.43 3.09
2314 2765 6.488006 CCCTTCTTCACATCCATATGGTTAAG 59.512 42.308 21.28 16.37 37.43 1.85
2317 2768 4.478317 TCCCTTCTTCACATCCATATGGTT 59.522 41.667 21.28 10.66 37.43 3.67
2318 2769 4.047166 TCCCTTCTTCACATCCATATGGT 58.953 43.478 21.28 6.34 37.43 3.55
2319 2770 4.712051 TCCCTTCTTCACATCCATATGG 57.288 45.455 16.25 16.25 37.43 2.74
2321 2772 5.370584 TGACATCCCTTCTTCACATCCATAT 59.629 40.000 0.00 0.00 0.00 1.78
2322 2773 4.721274 TGACATCCCTTCTTCACATCCATA 59.279 41.667 0.00 0.00 0.00 2.74
2323 2774 3.524789 TGACATCCCTTCTTCACATCCAT 59.475 43.478 0.00 0.00 0.00 3.41
2324 2775 2.912295 TGACATCCCTTCTTCACATCCA 59.088 45.455 0.00 0.00 0.00 3.41
2325 2776 3.274288 GTGACATCCCTTCTTCACATCC 58.726 50.000 0.00 0.00 38.60 3.51
2327 2778 2.355108 CCGTGACATCCCTTCTTCACAT 60.355 50.000 0.00 0.00 38.64 3.21
2328 2779 1.001974 CCGTGACATCCCTTCTTCACA 59.998 52.381 0.00 0.00 38.64 3.58
2329 2780 1.002087 ACCGTGACATCCCTTCTTCAC 59.998 52.381 0.00 0.00 35.93 3.18
2331 2782 2.474410 AACCGTGACATCCCTTCTTC 57.526 50.000 0.00 0.00 0.00 2.87
2332 2783 4.261801 CAATAACCGTGACATCCCTTCTT 58.738 43.478 0.00 0.00 0.00 2.52
2333 2784 3.263425 ACAATAACCGTGACATCCCTTCT 59.737 43.478 0.00 0.00 0.00 2.85
2335 2786 3.713826 ACAATAACCGTGACATCCCTT 57.286 42.857 0.00 0.00 0.00 3.95
2336 2787 4.224370 AGTTACAATAACCGTGACATCCCT 59.776 41.667 0.00 0.00 0.00 4.20
2337 2788 4.510571 AGTTACAATAACCGTGACATCCC 58.489 43.478 0.00 0.00 0.00 3.85
2340 2791 6.636666 CGTAAGTTACAATAACCGTGACAT 57.363 37.500 13.33 0.00 0.00 3.06
2355 2806 7.330946 CATCCTCAAAAGATGTCACGTAAGTTA 59.669 37.037 0.00 0.00 42.01 2.24
2356 2807 6.147821 CATCCTCAAAAGATGTCACGTAAGTT 59.852 38.462 0.00 0.00 42.01 2.66
2357 2808 5.639506 CATCCTCAAAAGATGTCACGTAAGT 59.360 40.000 0.00 0.00 43.51 2.24
2368 2819 6.463614 CGGATCCTCTAACATCCTCAAAAGAT 60.464 42.308 10.75 0.00 37.08 2.40
2369 2820 5.163405 CGGATCCTCTAACATCCTCAAAAGA 60.163 44.000 10.75 0.00 37.08 2.52
2370 2821 5.053145 CGGATCCTCTAACATCCTCAAAAG 58.947 45.833 10.75 0.00 37.08 2.27
2371 2822 4.141711 CCGGATCCTCTAACATCCTCAAAA 60.142 45.833 10.75 0.00 37.08 2.44
2373 2824 2.965831 CCGGATCCTCTAACATCCTCAA 59.034 50.000 10.75 0.00 37.08 3.02
2374 2825 2.091278 ACCGGATCCTCTAACATCCTCA 60.091 50.000 9.46 0.00 37.08 3.86
2376 2827 2.777459 ACCGGATCCTCTAACATCCT 57.223 50.000 9.46 0.00 37.08 3.24
2377 2828 2.037381 GGAACCGGATCCTCTAACATCC 59.963 54.545 22.87 4.23 36.50 3.51
2394 2845 1.377856 GCCTGCTCCTTGAGGGAAC 60.378 63.158 0.00 0.00 44.58 3.62
2395 2846 2.959484 CGCCTGCTCCTTGAGGGAA 61.959 63.158 0.00 0.00 44.58 3.97
2397 2848 4.479993 CCGCCTGCTCCTTGAGGG 62.480 72.222 0.00 0.00 35.41 4.30
2398 2849 4.479993 CCCGCCTGCTCCTTGAGG 62.480 72.222 0.00 0.00 0.00 3.86
2467 2966 1.090052 GGCTAGGTGCGGCTTAACTG 61.090 60.000 0.00 0.00 44.05 3.16
2600 3346 0.743701 TCGTCGAGTGAGAGGTAGCC 60.744 60.000 0.00 0.00 0.00 3.93
2634 3380 1.747745 GGTAATTTGCGGAGGCGGT 60.748 57.895 0.00 0.00 44.10 5.68
2645 3391 3.329814 AGTCGGTGAGGGAAAGGTAATTT 59.670 43.478 0.00 0.00 0.00 1.82
2646 3392 2.910977 AGTCGGTGAGGGAAAGGTAATT 59.089 45.455 0.00 0.00 0.00 1.40
2650 3396 1.203149 AGTAGTCGGTGAGGGAAAGGT 60.203 52.381 0.00 0.00 0.00 3.50
2710 3456 0.962489 CTACGATGGGCCGAGAGATT 59.038 55.000 0.00 0.00 0.00 2.40
2725 3471 0.525668 AGCCGACGAGCAAATCTACG 60.526 55.000 10.28 0.00 34.23 3.51
2733 3479 4.357947 GGTGTCAGCCGACGAGCA 62.358 66.667 10.28 0.00 45.80 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.