Multiple sequence alignment - TraesCS2A01G592500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G592500 chr2A 100.000 6200 0 0 1 6200 779641480 779647679 0.000000e+00 11450.0
1 TraesCS2A01G592500 chr2A 91.304 184 13 3 5872 6054 779656996 779657177 1.330000e-61 248.0
2 TraesCS2A01G592500 chr2A 79.056 339 53 10 2987 3311 691534465 691534131 3.760000e-52 217.0
3 TraesCS2A01G592500 chr2A 87.075 147 12 1 5589 5735 779654135 779654274 6.430000e-35 159.0
4 TraesCS2A01G592500 chr2A 84.932 73 5 2 2208 2274 723121849 723121921 1.120000e-07 69.4
5 TraesCS2A01G592500 chr2A 78.302 106 11 9 6097 6200 779657196 779657291 2.410000e-04 58.4
6 TraesCS2A01G592500 chr2D 93.585 2946 130 22 2273 5210 634125990 634123096 0.000000e+00 4338.0
7 TraesCS2A01G592500 chr2D 87.778 1350 116 16 526 1831 634127724 634126380 0.000000e+00 1533.0
8 TraesCS2A01G592500 chr2D 88.866 485 33 10 22 489 634128209 634127729 1.500000e-160 577.0
9 TraesCS2A01G592500 chr2D 89.169 397 9 5 1823 2210 634126359 634125988 1.220000e-126 464.0
10 TraesCS2A01G592500 chr2D 87.685 203 15 6 5872 6069 634122175 634121978 1.740000e-55 228.0
11 TraesCS2A01G592500 chr2D 80.597 335 25 22 5872 6199 634071371 634071070 8.090000e-54 222.0
12 TraesCS2A01G592500 chr2D 88.710 186 11 6 5588 5763 634122671 634122486 1.050000e-52 219.0
13 TraesCS2A01G592500 chr2D 87.919 149 11 5 5255 5396 634123006 634122858 1.070000e-37 169.0
14 TraesCS2A01G592500 chr2D 85.811 148 10 3 5588 5735 634073765 634073629 5.010000e-31 147.0
15 TraesCS2A01G592500 chr2D 86.869 99 10 2 3081 3177 548462647 548462550 2.360000e-19 108.0
16 TraesCS2A01G592500 chr2D 93.056 72 1 2 2208 2275 63541874 63541803 1.100000e-17 102.0
17 TraesCS2A01G592500 chr2D 93.220 59 2 2 6097 6155 634121972 634121916 1.110000e-12 86.1
18 TraesCS2A01G592500 chr2D 96.154 52 2 0 26 77 634140151 634140100 1.110000e-12 86.1
19 TraesCS2A01G592500 chr2B 91.112 2419 146 29 2795 5210 777116489 777114137 0.000000e+00 3212.0
20 TraesCS2A01G592500 chr2B 88.032 1738 123 29 525 2209 777118837 777117132 0.000000e+00 1978.0
21 TraesCS2A01G592500 chr2B 94.528 530 23 2 2275 2798 777117130 777116601 0.000000e+00 813.0
22 TraesCS2A01G592500 chr2B 83.491 527 48 19 1 497 777119350 777118833 7.330000e-124 455.0
23 TraesCS2A01G592500 chr2B 91.388 209 12 4 5996 6200 777113485 777113279 1.320000e-71 281.0
24 TraesCS2A01G592500 chr2B 87.773 229 11 5 5258 5480 777114043 777113826 1.030000e-62 252.0
25 TraesCS2A01G592500 chr2B 91.971 137 11 0 5589 5725 777001658 777001522 6.340000e-45 193.0
26 TraesCS2A01G592500 chr2B 93.805 113 7 0 5588 5700 777113704 777113592 2.970000e-38 171.0
27 TraesCS2A01G592500 chr4A 85.023 434 54 5 1336 1759 717014236 717013804 1.230000e-116 431.0
28 TraesCS2A01G592500 chr7A 82.625 259 43 2 3137 3395 725129107 725129363 1.740000e-55 228.0
29 TraesCS2A01G592500 chr1D 91.463 82 5 1 2200 2281 18989176 18989255 1.830000e-20 111.0
30 TraesCS2A01G592500 chr6D 90.667 75 3 3 2204 2274 445933039 445932965 5.120000e-16 97.1
31 TraesCS2A01G592500 chr6D 87.324 71 4 4 2208 2274 445932965 445933034 6.660000e-10 76.8
32 TraesCS2A01G592500 chr5B 91.045 67 3 1 2208 2274 440220282 440220219 3.080000e-13 87.9
33 TraesCS2A01G592500 chr5B 100.000 46 0 0 2233 2278 393069231 393069186 1.110000e-12 86.1
34 TraesCS2A01G592500 chr3B 89.706 68 6 1 2208 2274 725573682 725573615 1.110000e-12 86.1
35 TraesCS2A01G592500 chr6A 85.507 69 6 2 2208 2274 219208807 219208741 1.120000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G592500 chr2A 779641480 779647679 6199 False 11450.000000 11450 100.000000 1 6200 1 chr2A.!!$F2 6199
1 TraesCS2A01G592500 chr2D 634121916 634128209 6293 True 951.762500 4338 89.616500 22 6155 8 chr2D.!!$R5 6133
2 TraesCS2A01G592500 chr2B 777113279 777119350 6071 True 1023.142857 3212 90.018429 1 6200 7 chr2B.!!$R2 6199

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
959 1011 0.246635 ACTCTGATGGTACGTGTGGC 59.753 55.0 0.0 0.0 0.00 5.01 F
976 1028 0.317938 GGCGACCATAGCGACAGTAG 60.318 60.0 0.0 0.0 36.61 2.57 F
984 1036 0.661552 TAGCGACAGTAGCATCGTCC 59.338 55.0 8.5 0.0 40.49 4.79 F
1200 1276 0.725686 CTGTGCTCCATTTGCTCTCG 59.274 55.0 0.0 0.0 0.00 4.04 F
2677 2801 0.105964 CACTGGTTCGTGGACCTTGA 59.894 55.0 0.0 0.0 40.47 3.02 F
3989 4237 0.752658 TCCGCATGGTAGACCTCATG 59.247 55.0 0.0 0.0 42.47 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2257 2375 0.338814 AGGTACTCCCTCCGTTCCAT 59.661 55.0 0.0 0.0 40.71 3.41 R
2263 2381 0.391263 GCAAACAGGTACTCCCTCCG 60.391 60.0 0.0 0.0 43.86 4.63 R
2264 2382 0.984995 AGCAAACAGGTACTCCCTCC 59.015 55.0 0.0 0.0 43.86 4.30 R
3084 3324 0.602905 ACGGTTCTGGCTTGTACTGC 60.603 55.0 0.0 0.0 0.00 4.40 R
4164 4412 0.107116 TACCACAAACCGCCACTTGT 60.107 50.0 0.0 0.0 36.19 3.16 R
5778 6147 0.446616 GGGACGGAAGAATCGTTTGC 59.553 55.0 0.0 0.0 41.22 3.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.683933 ACCCAGCCTCGGATTCGT 60.684 61.111 0.00 0.00 37.69 3.85
208 221 4.389576 GCTCAGGCGCGTGGTTTG 62.390 66.667 27.93 16.73 0.00 2.93
209 222 2.972505 CTCAGGCGCGTGGTTTGT 60.973 61.111 27.93 0.00 0.00 2.83
212 225 1.657181 CAGGCGCGTGGTTTGTTTC 60.657 57.895 21.95 0.00 0.00 2.78
218 231 1.655325 CGCGTGGTTTGTTTCGTAGTG 60.655 52.381 0.00 0.00 0.00 2.74
227 240 2.206750 TGTTTCGTAGTGGCTGTGAAC 58.793 47.619 0.00 0.00 0.00 3.18
266 283 4.389576 GGGCGTCGCTGTTTGCTG 62.390 66.667 18.11 0.00 40.11 4.41
283 300 0.966179 CTGTGGGTTAGGTTTTGGCC 59.034 55.000 0.00 0.00 0.00 5.36
335 360 2.289882 CCTCTGGAGCAGTTTGTGATGA 60.290 50.000 0.00 0.00 32.61 2.92
434 467 2.134346 CAATTTTGGTTTGCAGACCCG 58.866 47.619 22.76 1.91 39.01 5.28
440 473 1.072489 TGGTTTGCAGACCCGTATGAA 59.928 47.619 22.76 0.00 39.01 2.57
444 477 2.309528 TGCAGACCCGTATGAATGAC 57.690 50.000 0.00 0.00 0.00 3.06
456 489 4.330894 CGTATGAATGACATGCTCACTGTT 59.669 41.667 0.00 0.00 38.99 3.16
458 491 3.742385 TGAATGACATGCTCACTGTTCA 58.258 40.909 0.00 1.38 0.00 3.18
489 523 8.946085 TGTTCATTCTTCAGTTATCCATGTTAC 58.054 33.333 0.00 0.00 0.00 2.50
490 524 9.167311 GTTCATTCTTCAGTTATCCATGTTACT 57.833 33.333 0.00 0.00 0.00 2.24
499 533 9.656323 TCAGTTATCCATGTTACTAATAGTCCT 57.344 33.333 0.00 0.00 0.00 3.85
502 536 9.694137 GTTATCCATGTTACTAATAGTCCTGAC 57.306 37.037 0.00 0.00 0.00 3.51
503 537 9.656323 TTATCCATGTTACTAATAGTCCTGACT 57.344 33.333 5.01 5.01 45.02 3.41
504 538 7.973048 TCCATGTTACTAATAGTCCTGACTT 57.027 36.000 4.94 0.00 42.54 3.01
505 539 8.375493 TCCATGTTACTAATAGTCCTGACTTT 57.625 34.615 4.94 3.17 42.54 2.66
506 540 8.822805 TCCATGTTACTAATAGTCCTGACTTTT 58.177 33.333 4.94 6.67 42.54 2.27
507 541 9.449719 CCATGTTACTAATAGTCCTGACTTTTT 57.550 33.333 4.94 3.27 42.54 1.94
557 591 6.013379 ACTTCTGATTTCTGAGTCCTCTGTA 58.987 40.000 0.00 0.00 0.00 2.74
558 592 6.152661 ACTTCTGATTTCTGAGTCCTCTGTAG 59.847 42.308 0.00 0.00 0.00 2.74
595 630 4.159506 TCTTTTTGGGGCTGTTGCATATAC 59.840 41.667 0.00 0.00 41.91 1.47
605 640 5.104527 GGCTGTTGCATATACCTATGGGATA 60.105 44.000 0.25 0.00 41.91 2.59
656 692 8.768019 CATTCATTCTTCAGCTATCGATGTTAA 58.232 33.333 8.54 0.00 0.00 2.01
666 702 7.067129 TCAGCTATCGATGTTAACAGTAGTTCT 59.933 37.037 14.65 3.25 39.15 3.01
668 704 7.067129 AGCTATCGATGTTAACAGTAGTTCTGA 59.933 37.037 14.65 8.33 46.27 3.27
717 764 3.866703 TTGGACATTGGACTGTTGGTA 57.133 42.857 0.00 0.00 0.00 3.25
718 765 3.866703 TGGACATTGGACTGTTGGTAA 57.133 42.857 0.00 0.00 0.00 2.85
724 771 5.636123 ACATTGGACTGTTGGTAAATGGTA 58.364 37.500 0.00 0.00 36.86 3.25
746 793 9.241919 TGGTACATTTATGAGTTGTTTCATCAT 57.758 29.630 0.00 0.00 38.65 2.45
866 913 8.659925 TTTATCACATTGTGTTTCTGCATTTT 57.340 26.923 16.06 0.00 34.79 1.82
870 917 8.484641 TCACATTGTGTTTCTGCATTTTTAAA 57.515 26.923 16.06 0.00 34.79 1.52
893 940 5.003804 ACTGTGGTTAGGCTTATGTTTCTG 58.996 41.667 0.00 0.00 0.00 3.02
920 967 1.153823 CTAACCAGGACGTGCCTCG 60.154 63.158 2.38 0.19 46.97 4.63
937 989 3.004862 CCTCGTGTGGTTGTATAAACCC 58.995 50.000 4.86 0.00 39.54 4.11
949 1001 2.332063 ATAAACCCGCACTCTGATGG 57.668 50.000 0.00 0.00 0.00 3.51
959 1011 0.246635 ACTCTGATGGTACGTGTGGC 59.753 55.000 0.00 0.00 0.00 5.01
965 1017 1.895020 ATGGTACGTGTGGCGACCAT 61.895 55.000 11.76 11.76 46.25 3.55
968 1020 1.140161 TACGTGTGGCGACCATAGC 59.860 57.895 0.00 0.00 44.77 2.97
976 1028 0.317938 GGCGACCATAGCGACAGTAG 60.318 60.000 0.00 0.00 36.61 2.57
977 1029 0.935366 GCGACCATAGCGACAGTAGC 60.935 60.000 0.00 0.00 0.00 3.58
980 1032 2.667137 GACCATAGCGACAGTAGCATC 58.333 52.381 8.50 0.00 37.01 3.91
982 1034 1.001268 CCATAGCGACAGTAGCATCGT 60.001 52.381 8.50 0.00 40.49 3.73
984 1036 0.661552 TAGCGACAGTAGCATCGTCC 59.338 55.000 8.50 0.00 40.49 4.79
990 1042 1.478510 ACAGTAGCATCGTCCTTCTGG 59.521 52.381 9.58 0.00 33.58 3.86
994 1046 3.452627 AGTAGCATCGTCCTTCTGGAAAT 59.547 43.478 0.00 0.00 45.18 2.17
1101 1177 6.070366 GGGGATTGGTAGTTACTCACTAACTT 60.070 42.308 0.00 0.00 45.12 2.66
1102 1178 6.817140 GGGATTGGTAGTTACTCACTAACTTG 59.183 42.308 0.00 0.00 45.12 3.16
1103 1179 6.817140 GGATTGGTAGTTACTCACTAACTTGG 59.183 42.308 0.00 0.00 45.12 3.61
1104 1180 6.736110 TTGGTAGTTACTCACTAACTTGGT 57.264 37.500 0.00 0.00 45.12 3.67
1105 1181 7.838079 TTGGTAGTTACTCACTAACTTGGTA 57.162 36.000 0.00 0.00 45.12 3.25
1106 1182 7.458409 TGGTAGTTACTCACTAACTTGGTAG 57.542 40.000 0.00 0.00 45.12 3.18
1159 1235 0.846427 AATCTGACCTTGAGGGGCCA 60.846 55.000 4.39 0.00 44.39 5.36
1169 1245 3.628257 CCTTGAGGGGCCACATAGAAATT 60.628 47.826 8.31 0.00 0.00 1.82
1177 1253 2.949963 GCCACATAGAAATTCTGGGCCA 60.950 50.000 5.85 5.85 34.17 5.36
1198 1274 0.964358 GGCTGTGCTCCATTTGCTCT 60.964 55.000 0.00 0.00 0.00 4.09
1200 1276 0.725686 CTGTGCTCCATTTGCTCTCG 59.274 55.000 0.00 0.00 0.00 4.04
1222 1298 6.274579 TCGGCAAAATGATACGAGTTGTATA 58.725 36.000 2.83 0.00 43.87 1.47
1225 1301 7.116376 CGGCAAAATGATACGAGTTGTATATCT 59.884 37.037 2.83 0.00 43.87 1.98
1269 1345 3.242413 CGGGATTTGTCGCTGTATTTCAG 60.242 47.826 0.00 0.00 46.12 3.02
1274 1350 4.896562 TTGTCGCTGTATTTCAGTAACG 57.103 40.909 0.00 0.00 45.23 3.18
1283 1359 6.176975 TGTATTTCAGTAACGCCAATGAAG 57.823 37.500 0.94 0.00 33.53 3.02
1289 1365 3.058293 CAGTAACGCCAATGAAGCTGAAA 60.058 43.478 0.00 0.00 0.00 2.69
1299 1375 3.402628 TGAAGCTGAAAGTGGAGGTAC 57.597 47.619 0.00 0.00 35.30 3.34
1304 1380 3.514309 AGCTGAAAGTGGAGGTACGTAAT 59.486 43.478 0.00 0.00 35.30 1.89
1305 1381 3.617263 GCTGAAAGTGGAGGTACGTAATG 59.383 47.826 0.00 0.00 35.30 1.90
1308 1384 5.957798 TGAAAGTGGAGGTACGTAATGTAG 58.042 41.667 0.00 0.00 32.51 2.74
1313 1389 5.356470 AGTGGAGGTACGTAATGTAGTTCTC 59.644 44.000 0.00 0.00 32.51 2.87
1314 1390 5.124457 GTGGAGGTACGTAATGTAGTTCTCA 59.876 44.000 0.00 0.00 32.51 3.27
1317 1393 7.557358 TGGAGGTACGTAATGTAGTTCTCATTA 59.443 37.037 0.00 0.00 36.92 1.90
1327 1403 6.968131 TGTAGTTCTCATTACATTGTCTGC 57.032 37.500 0.00 0.00 0.00 4.26
1330 1406 5.564550 AGTTCTCATTACATTGTCTGCCTT 58.435 37.500 0.00 0.00 0.00 4.35
1331 1407 5.645497 AGTTCTCATTACATTGTCTGCCTTC 59.355 40.000 0.00 0.00 0.00 3.46
1334 1410 5.645067 TCTCATTACATTGTCTGCCTTCTTG 59.355 40.000 0.00 0.00 0.00 3.02
1339 1419 4.685924 ACATTGTCTGCCTTCTTGTTTTG 58.314 39.130 0.00 0.00 0.00 2.44
1351 1431 5.449999 CCTTCTTGTTTTGTTCCTGTGGTAC 60.450 44.000 0.00 0.00 0.00 3.34
1406 1486 8.608844 TTTAGTTGAGTTTCTCTCCTGAAATC 57.391 34.615 0.00 0.00 42.12 2.17
1501 1581 4.918810 ATCAAAAGCCGTTGTTTTCTCT 57.081 36.364 0.00 0.00 0.00 3.10
1587 1667 6.314648 CACAAGACATACATGACACATAAGCT 59.685 38.462 0.00 0.00 0.00 3.74
1589 1669 5.982356 AGACATACATGACACATAAGCTGT 58.018 37.500 0.00 0.00 39.20 4.40
1654 1734 1.753649 ACTCTGTGCAGCGTATCATCT 59.246 47.619 0.00 0.00 0.00 2.90
1657 1737 4.038522 ACTCTGTGCAGCGTATCATCTATT 59.961 41.667 0.00 0.00 0.00 1.73
1661 1741 4.209080 TGTGCAGCGTATCATCTATTTTCG 59.791 41.667 0.00 0.00 0.00 3.46
1678 1758 1.075542 TCGTGCAGCTTTATGTTCCG 58.924 50.000 0.00 0.00 0.00 4.30
1680 1760 1.196808 CGTGCAGCTTTATGTTCCGTT 59.803 47.619 0.00 0.00 0.00 4.44
1683 1763 4.436852 CGTGCAGCTTTATGTTCCGTTTAT 60.437 41.667 0.00 0.00 0.00 1.40
1684 1764 5.399013 GTGCAGCTTTATGTTCCGTTTATT 58.601 37.500 0.00 0.00 0.00 1.40
1831 1940 6.681777 ACTTCATTTTAAGACATGGTGAAGC 58.318 36.000 10.98 0.00 42.78 3.86
1835 1944 7.495901 TCATTTTAAGACATGGTGAAGCAAAA 58.504 30.769 0.00 0.00 0.00 2.44
1850 1962 3.221771 AGCAAAATAACTGTCCTGTGCA 58.778 40.909 0.00 0.00 33.21 4.57
2037 2155 7.016563 TGGCTTATGAAATATGCTTCCTCTAGA 59.983 37.037 0.00 0.00 45.99 2.43
2222 2340 8.401955 ACTTAATTATTACTCCCTCCTTTCCA 57.598 34.615 0.00 0.00 0.00 3.53
2223 2341 9.015146 ACTTAATTATTACTCCCTCCTTTCCAT 57.985 33.333 0.00 0.00 0.00 3.41
2229 2347 9.684702 TTATTACTCCCTCCTTTCCATATTACT 57.315 33.333 0.00 0.00 0.00 2.24
2230 2348 8.582891 ATTACTCCCTCCTTTCCATATTACTT 57.417 34.615 0.00 0.00 0.00 2.24
2231 2349 6.502074 ACTCCCTCCTTTCCATATTACTTC 57.498 41.667 0.00 0.00 0.00 3.01
2232 2350 6.213525 ACTCCCTCCTTTCCATATTACTTCT 58.786 40.000 0.00 0.00 0.00 2.85
2233 2351 6.678857 ACTCCCTCCTTTCCATATTACTTCTT 59.321 38.462 0.00 0.00 0.00 2.52
2234 2352 6.900194 TCCCTCCTTTCCATATTACTTCTTG 58.100 40.000 0.00 0.00 0.00 3.02
2235 2353 6.447084 TCCCTCCTTTCCATATTACTTCTTGT 59.553 38.462 0.00 0.00 0.00 3.16
2236 2354 7.626084 TCCCTCCTTTCCATATTACTTCTTGTA 59.374 37.037 0.00 0.00 0.00 2.41
2237 2355 7.715686 CCCTCCTTTCCATATTACTTCTTGTAC 59.284 40.741 0.00 0.00 0.00 2.90
2238 2356 8.487028 CCTCCTTTCCATATTACTTCTTGTACT 58.513 37.037 0.00 0.00 0.00 2.73
2249 2367 7.807687 TTACTTCTTGTACTAAATCAGCGAC 57.192 36.000 0.00 0.00 0.00 5.19
2250 2368 4.857588 ACTTCTTGTACTAAATCAGCGACG 59.142 41.667 0.00 0.00 0.00 5.12
2251 2369 4.690184 TCTTGTACTAAATCAGCGACGA 57.310 40.909 0.00 0.00 0.00 4.20
2252 2370 4.659088 TCTTGTACTAAATCAGCGACGAG 58.341 43.478 0.00 0.00 0.00 4.18
2253 2371 4.155462 TCTTGTACTAAATCAGCGACGAGT 59.845 41.667 0.00 0.00 31.22 4.18
2254 2372 5.352293 TCTTGTACTAAATCAGCGACGAGTA 59.648 40.000 0.00 0.00 31.22 2.59
2255 2373 5.550232 TGTACTAAATCAGCGACGAGTAA 57.450 39.130 0.00 0.00 0.00 2.24
2256 2374 6.127810 TGTACTAAATCAGCGACGAGTAAT 57.872 37.500 0.00 0.00 0.00 1.89
2257 2375 7.250445 TGTACTAAATCAGCGACGAGTAATA 57.750 36.000 0.00 0.00 0.00 0.98
2258 2376 7.868775 TGTACTAAATCAGCGACGAGTAATAT 58.131 34.615 0.00 0.00 0.00 1.28
2259 2377 7.801783 TGTACTAAATCAGCGACGAGTAATATG 59.198 37.037 0.00 0.00 0.00 1.78
2260 2378 6.150318 ACTAAATCAGCGACGAGTAATATGG 58.850 40.000 0.00 0.00 0.00 2.74
2261 2379 4.848562 AATCAGCGACGAGTAATATGGA 57.151 40.909 0.00 0.00 0.00 3.41
2262 2380 4.848562 ATCAGCGACGAGTAATATGGAA 57.151 40.909 0.00 0.00 0.00 3.53
2263 2381 3.961182 TCAGCGACGAGTAATATGGAAC 58.039 45.455 0.00 0.00 0.00 3.62
2264 2382 2.719556 CAGCGACGAGTAATATGGAACG 59.280 50.000 0.00 0.00 0.00 3.95
2265 2383 2.049228 GCGACGAGTAATATGGAACGG 58.951 52.381 0.00 0.00 0.00 4.44
2266 2384 2.287188 GCGACGAGTAATATGGAACGGA 60.287 50.000 0.00 0.00 0.00 4.69
2267 2385 3.552541 CGACGAGTAATATGGAACGGAG 58.447 50.000 0.00 0.00 0.00 4.63
2268 2386 3.608707 CGACGAGTAATATGGAACGGAGG 60.609 52.174 0.00 0.00 0.00 4.30
2269 2387 2.626743 ACGAGTAATATGGAACGGAGGG 59.373 50.000 0.00 0.00 0.00 4.30
2270 2388 2.889045 CGAGTAATATGGAACGGAGGGA 59.111 50.000 0.00 0.00 0.00 4.20
2271 2389 3.057456 CGAGTAATATGGAACGGAGGGAG 60.057 52.174 0.00 0.00 0.00 4.30
2272 2390 3.896272 GAGTAATATGGAACGGAGGGAGT 59.104 47.826 0.00 0.00 0.00 3.85
2273 2391 5.070823 AGTAATATGGAACGGAGGGAGTA 57.929 43.478 0.00 0.00 0.00 2.59
2515 2633 8.038492 ACATTTAGTTCAAGAGAATCAAGAGC 57.962 34.615 0.00 0.00 37.82 4.09
2677 2801 0.105964 CACTGGTTCGTGGACCTTGA 59.894 55.000 0.00 0.00 40.47 3.02
2729 2853 7.042858 GCTATCAATGTGTCAATCTACTGTCTG 60.043 40.741 0.00 0.00 0.00 3.51
2793 3033 4.702831 CTGCAAGTTTTGGGGTTATTTGT 58.297 39.130 0.00 0.00 0.00 2.83
2835 3075 4.128925 TGACTCATTCATACCAGCTGAC 57.871 45.455 17.39 0.00 0.00 3.51
2862 3102 4.530161 GCTGTTCCATCTGTAGATATCCCT 59.470 45.833 0.00 0.00 32.63 4.20
2890 3130 3.217681 TGGTGATGGGTGATGATGATG 57.782 47.619 0.00 0.00 0.00 3.07
3028 3268 6.371548 GGACAATGAGCTACAACATTTGAGTA 59.628 38.462 0.00 0.00 35.01 2.59
3033 3273 9.890629 AATGAGCTACAACATTTGAGTATAGAA 57.109 29.630 0.00 0.00 33.72 2.10
3075 3315 7.883311 AGTAAAGCAAAGATTAAGAAGCCAGTA 59.117 33.333 0.00 0.00 0.00 2.74
3084 3324 2.457366 AGAAGCCAGTACCTGTTTCG 57.543 50.000 0.00 0.00 32.36 3.46
3118 3358 2.584064 CGTGGATGCTACAGGGCA 59.416 61.111 0.00 0.00 46.63 5.36
3125 3365 2.158696 GGATGCTACAGGGCAAAGATCT 60.159 50.000 0.00 0.00 45.68 2.75
3153 3393 4.261801 TGCCTAGACAACTAAATCTTGCC 58.738 43.478 0.00 0.00 0.00 4.52
3174 3414 5.126067 GCCATTGTAAGTGACCATCTATGT 58.874 41.667 0.00 0.00 0.00 2.29
3193 3433 9.712305 ATCTATGTATTACATACTTGCTGTTCC 57.288 33.333 11.64 0.00 39.88 3.62
3197 3437 6.593770 TGTATTACATACTTGCTGTTCCAGTG 59.406 38.462 0.00 0.00 36.70 3.66
3266 3508 6.152661 TCTCTTTGGATGCGTTAAATTGGAAT 59.847 34.615 0.00 0.00 0.00 3.01
3285 3527 6.194235 TGGAATTTATTGCTAGGTTGGTCAT 58.806 36.000 0.00 0.00 0.00 3.06
3390 3638 5.007724 TGAGAAAGAAGCGAAAGAAAAGGTC 59.992 40.000 0.00 0.00 0.00 3.85
3392 3640 4.820284 AAGAAGCGAAAGAAAAGGTCAG 57.180 40.909 0.00 0.00 0.00 3.51
3393 3641 3.809905 AGAAGCGAAAGAAAAGGTCAGT 58.190 40.909 0.00 0.00 0.00 3.41
3394 3642 4.200092 AGAAGCGAAAGAAAAGGTCAGTT 58.800 39.130 0.00 0.00 0.00 3.16
3395 3643 4.640647 AGAAGCGAAAGAAAAGGTCAGTTT 59.359 37.500 0.00 0.00 0.00 2.66
3396 3644 5.820947 AGAAGCGAAAGAAAAGGTCAGTTTA 59.179 36.000 0.00 0.00 0.00 2.01
3397 3645 5.674933 AGCGAAAGAAAAGGTCAGTTTAG 57.325 39.130 0.00 0.00 0.00 1.85
3589 3837 6.983890 CCAAAAACTACCAAGTTGTTATGCTT 59.016 34.615 1.45 0.00 45.37 3.91
3613 3861 3.117131 ACTCCCCTGGTCACAAAGATTTT 60.117 43.478 0.00 0.00 0.00 1.82
3796 4044 7.251704 AGTTGCTGTTAATAAGATGGATTCG 57.748 36.000 0.00 0.00 0.00 3.34
3877 4125 4.618912 CGATCATGTGGCTATAAAGAGTCG 59.381 45.833 0.00 0.00 0.00 4.18
3989 4237 0.752658 TCCGCATGGTAGACCTCATG 59.247 55.000 0.00 0.00 42.47 3.07
3997 4245 5.319453 CATGGTAGACCTCATGGCATTATT 58.681 41.667 0.00 0.00 37.63 1.40
4007 4255 6.998074 ACCTCATGGCATTATTTCTATTTCGA 59.002 34.615 0.00 0.00 36.63 3.71
4014 4262 8.181573 TGGCATTATTTCTATTTCGACAACTTC 58.818 33.333 0.00 0.00 0.00 3.01
4206 4454 0.249120 TAGTGTGTGGAGCAATCCGG 59.751 55.000 0.00 0.00 0.00 5.14
4230 4478 5.690865 AGTGATTCCAAGGTAAAACACTGA 58.309 37.500 0.00 0.00 36.29 3.41
4240 4488 9.541143 CCAAGGTAAAACACTGAAATTTATGTT 57.459 29.630 8.44 8.44 36.86 2.71
4243 4491 9.965824 AGGTAAAACACTGAAATTTATGTTCTG 57.034 29.630 12.75 0.00 34.24 3.02
4249 4497 7.865707 ACACTGAAATTTATGTTCTGACAGTC 58.134 34.615 1.59 0.00 39.58 3.51
4251 4499 8.509690 CACTGAAATTTATGTTCTGACAGTCAT 58.490 33.333 2.97 15.73 39.58 3.06
4252 4500 9.725019 ACTGAAATTTATGTTCTGACAGTCATA 57.275 29.630 2.97 14.32 39.58 2.15
4254 4502 9.725019 TGAAATTTATGTTCTGACAGTCATACT 57.275 29.630 2.97 9.03 39.58 2.12
4256 4504 7.993821 ATTTATGTTCTGACAGTCATACTCG 57.006 36.000 2.97 0.00 39.58 4.18
4257 4505 6.510879 TTATGTTCTGACAGTCATACTCGT 57.489 37.500 2.97 0.24 39.58 4.18
4258 4506 4.848562 TGTTCTGACAGTCATACTCGTT 57.151 40.909 2.97 0.00 0.00 3.85
4259 4507 4.546570 TGTTCTGACAGTCATACTCGTTG 58.453 43.478 2.97 0.00 0.00 4.10
4260 4508 3.217599 TCTGACAGTCATACTCGTTGC 57.782 47.619 2.97 0.00 0.00 4.17
4261 4509 2.820197 TCTGACAGTCATACTCGTTGCT 59.180 45.455 2.97 0.00 0.00 3.91
4262 4510 3.255888 TCTGACAGTCATACTCGTTGCTT 59.744 43.478 2.97 0.00 0.00 3.91
4263 4511 3.990092 TGACAGTCATACTCGTTGCTTT 58.010 40.909 0.00 0.00 0.00 3.51
4264 4512 4.377021 TGACAGTCATACTCGTTGCTTTT 58.623 39.130 0.00 0.00 0.00 2.27
4265 4513 4.814234 TGACAGTCATACTCGTTGCTTTTT 59.186 37.500 0.00 0.00 0.00 1.94
4304 4552 8.939201 TTGTTGCTTTTTGAACTATGAATTCA 57.061 26.923 11.26 11.26 34.27 2.57
4308 4556 9.985730 TTGCTTTTTGAACTATGAATTCAATCT 57.014 25.926 13.09 0.00 43.65 2.40
4310 4558 9.852091 GCTTTTTGAACTATGAATTCAATCTCT 57.148 29.630 13.09 0.00 43.65 3.10
4415 4663 6.299141 AGTTATCTTGCTTTGTCTTCTGGAA 58.701 36.000 0.00 0.00 0.00 3.53
4423 4671 4.496507 GCTTTGTCTTCTGGAACTGTTGTC 60.497 45.833 0.00 0.00 0.00 3.18
4425 4673 4.487714 TGTCTTCTGGAACTGTTGTCTT 57.512 40.909 0.00 0.00 0.00 3.01
4435 4683 9.739276 TCTGGAACTGTTGTCTTATATCAAAAT 57.261 29.630 0.00 0.00 0.00 1.82
4466 4715 1.466167 CAGGTTCTTGTGATGCCTTCG 59.534 52.381 0.00 0.00 0.00 3.79
4664 4913 1.937191 TCCTGGTGCTAGACATCACA 58.063 50.000 0.00 0.00 33.24 3.58
4733 4982 3.076621 GACCATGCATTGTGAGAGAACA 58.923 45.455 8.36 0.00 0.00 3.18
4734 4983 3.079578 ACCATGCATTGTGAGAGAACAG 58.920 45.455 2.00 0.00 0.00 3.16
4736 4985 3.754850 CCATGCATTGTGAGAGAACAGAA 59.245 43.478 0.00 0.00 0.00 3.02
4737 4986 4.379186 CCATGCATTGTGAGAGAACAGAAC 60.379 45.833 0.00 0.00 0.00 3.01
4738 4987 4.077300 TGCATTGTGAGAGAACAGAACT 57.923 40.909 0.00 0.00 0.00 3.01
4739 4988 4.060900 TGCATTGTGAGAGAACAGAACTC 58.939 43.478 0.00 0.00 34.95 3.01
4740 4989 4.060900 GCATTGTGAGAGAACAGAACTCA 58.939 43.478 0.00 0.00 38.16 3.41
4741 4990 4.694509 GCATTGTGAGAGAACAGAACTCAT 59.305 41.667 0.00 0.00 41.57 2.90
4774 5023 4.321966 TCGTGCCATCGCCCAACA 62.322 61.111 0.00 0.00 0.00 3.33
4784 5033 1.300311 CGCCCAACACACTGACGTA 60.300 57.895 0.00 0.00 0.00 3.57
4836 5086 2.046892 GAGCTCCACGTGCACCAT 60.047 61.111 10.91 0.00 0.00 3.55
4866 5116 2.670148 GGCGTCCCTGGTGAGGATT 61.670 63.158 8.45 0.00 42.93 3.01
4926 5176 4.087892 AAGCCGCGGATGCTGACT 62.088 61.111 33.48 11.96 39.48 3.41
4931 5181 2.815211 GCGGATGCTGACTGCGAA 60.815 61.111 0.00 0.00 46.63 4.70
4954 5204 1.364171 GCTGCCATCGTCGAGGTAT 59.636 57.895 6.12 0.00 0.00 2.73
4959 5209 1.470979 GCCATCGTCGAGGTATGTTGT 60.471 52.381 6.12 0.00 0.00 3.32
4966 5216 2.343544 GTCGAGGTATGTTGTGTTACGC 59.656 50.000 0.00 0.00 0.00 4.42
5014 5264 1.937191 TGAGTGCCTAGTGGTGATCA 58.063 50.000 0.00 0.00 35.27 2.92
5016 5266 2.840038 TGAGTGCCTAGTGGTGATCATT 59.160 45.455 0.00 0.00 35.27 2.57
5024 5274 3.228188 AGTGGTGATCATTTGTGGTGT 57.772 42.857 0.00 0.00 0.00 4.16
5028 5278 3.149196 GGTGATCATTTGTGGTGTCTGT 58.851 45.455 0.00 0.00 0.00 3.41
5029 5279 3.569701 GGTGATCATTTGTGGTGTCTGTT 59.430 43.478 0.00 0.00 0.00 3.16
5030 5280 4.037923 GGTGATCATTTGTGGTGTCTGTTT 59.962 41.667 0.00 0.00 0.00 2.83
5094 5344 1.073199 CGGAACACTCAAGGCCCTT 59.927 57.895 0.00 0.00 0.00 3.95
5190 5440 4.828925 GGGGAGCGAGCAGAGCAC 62.829 72.222 0.00 0.00 37.01 4.40
5220 5490 1.491563 CGCGTTGGCAGAGTTGTAC 59.508 57.895 0.00 0.00 39.92 2.90
5222 5492 1.156736 GCGTTGGCAGAGTTGTACAT 58.843 50.000 0.00 0.00 39.62 2.29
5230 5500 4.222810 TGGCAGAGTTGTACATACAGACAT 59.777 41.667 0.00 0.00 37.52 3.06
5232 5502 6.098266 TGGCAGAGTTGTACATACAGACATAT 59.902 38.462 0.00 0.00 37.52 1.78
5290 5586 1.134670 GGTTGGAGGATCTGGTCGAAG 60.135 57.143 0.00 0.00 33.73 3.79
5291 5587 0.537188 TTGGAGGATCTGGTCGAAGC 59.463 55.000 0.00 0.00 33.73 3.86
5292 5588 1.066587 GGAGGATCTGGTCGAAGCG 59.933 63.158 0.00 0.00 33.73 4.68
5294 5590 2.586357 GGATCTGGTCGAAGCGGC 60.586 66.667 0.00 0.00 0.00 6.53
5296 5592 1.227380 GATCTGGTCGAAGCGGCAT 60.227 57.895 1.45 0.00 30.88 4.40
5298 5594 2.960957 ATCTGGTCGAAGCGGCATCG 62.961 60.000 20.30 20.30 41.53 3.84
5299 5595 3.989698 CTGGTCGAAGCGGCATCGT 62.990 63.158 24.28 0.00 40.99 3.73
5447 5756 1.734388 GCTTGCTTTTGGGTCGGTGT 61.734 55.000 0.00 0.00 0.00 4.16
5448 5757 0.744281 CTTGCTTTTGGGTCGGTGTT 59.256 50.000 0.00 0.00 0.00 3.32
5597 5956 4.854784 TCGCCGCGCTGATGAGTC 62.855 66.667 8.21 0.00 0.00 3.36
5717 6076 4.292178 GATCCTCCTCGGCGGCTG 62.292 72.222 7.21 1.35 0.00 4.85
5763 6132 1.071019 CGTGCACTACAGTACCAGCG 61.071 60.000 16.19 0.00 0.00 5.18
5764 6133 1.080093 TGCACTACAGTACCAGCGC 60.080 57.895 0.00 0.00 0.00 5.92
5765 6134 2.158959 GCACTACAGTACCAGCGCG 61.159 63.158 0.00 0.00 0.00 6.86
5766 6135 1.504900 CACTACAGTACCAGCGCGA 59.495 57.895 12.10 0.00 0.00 5.87
5767 6136 0.797249 CACTACAGTACCAGCGCGAC 60.797 60.000 12.10 0.04 0.00 5.19
5768 6137 1.582937 CTACAGTACCAGCGCGACG 60.583 63.158 12.10 0.00 0.00 5.12
5784 6153 1.658102 ACGCAGTGCAATGCAAACG 60.658 52.632 34.93 22.31 46.87 3.60
5785 6154 1.370293 CGCAGTGCAATGCAAACGA 60.370 52.632 34.93 0.00 46.87 3.85
5787 6156 1.421382 GCAGTGCAATGCAAACGATT 58.579 45.000 32.30 0.00 45.77 3.34
5788 6157 1.387756 GCAGTGCAATGCAAACGATTC 59.612 47.619 32.30 0.30 45.77 2.52
5789 6158 2.923605 GCAGTGCAATGCAAACGATTCT 60.924 45.455 32.30 0.00 45.77 2.40
5790 6159 3.311106 CAGTGCAATGCAAACGATTCTT 58.689 40.909 10.44 0.00 41.47 2.52
5791 6160 3.362831 CAGTGCAATGCAAACGATTCTTC 59.637 43.478 10.44 0.00 41.47 2.87
5792 6161 2.663119 GTGCAATGCAAACGATTCTTCC 59.337 45.455 10.44 0.00 41.47 3.46
5796 6197 1.153353 TGCAAACGATTCTTCCGTCC 58.847 50.000 0.00 0.00 39.57 4.79
5806 6207 3.328382 TTCTTCCGTCCCTGTAACATG 57.672 47.619 0.00 0.00 0.00 3.21
5809 6210 3.517901 TCTTCCGTCCCTGTAACATGATT 59.482 43.478 0.00 0.00 0.00 2.57
5811 6212 2.835156 TCCGTCCCTGTAACATGATTCA 59.165 45.455 0.00 0.00 0.00 2.57
5819 6220 4.633126 CCTGTAACATGATTCAGTCAGTGG 59.367 45.833 0.00 0.00 40.92 4.00
5834 6235 3.935203 GTCAGTGGATGATTCAACGACAT 59.065 43.478 10.76 0.00 40.92 3.06
5835 6236 3.934579 TCAGTGGATGATTCAACGACATG 59.065 43.478 10.76 0.00 30.42 3.21
5836 6237 3.064408 CAGTGGATGATTCAACGACATGG 59.936 47.826 10.76 0.00 30.42 3.66
5838 6239 2.292267 GGATGATTCAACGACATGGCT 58.708 47.619 0.00 0.00 0.00 4.75
5845 6246 4.647424 TTCAACGACATGGCTTCTTTTT 57.353 36.364 0.00 0.00 0.00 1.94
5891 6462 1.136110 TGAGTTGTGACTGCTGAACGA 59.864 47.619 0.00 0.00 35.88 3.85
5919 6495 2.158696 GCTGGCCTGAGGATATTTCTGT 60.159 50.000 14.77 0.00 0.00 3.41
5958 6534 1.000843 CTCACATGGGTTCTCACGACA 59.999 52.381 0.00 0.00 0.00 4.35
6012 6588 2.769539 CGCGGCCACCATTATGCAA 61.770 57.895 2.24 0.00 0.00 4.08
6028 6604 1.975363 GCAACCGAGCTTAGCTGCTG 61.975 60.000 13.01 0.64 44.17 4.41
6093 6677 7.162082 ACATCTAATAAAAGGATCGATGGGAC 58.838 38.462 0.54 0.00 33.10 4.46
6162 6746 4.432741 GTCCCCTCTGCTTGCCCC 62.433 72.222 0.00 0.00 0.00 5.80
6179 6763 2.554775 CTGCGCTGCACTGAACTG 59.445 61.111 9.73 0.00 33.79 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 2.202932 CCACGAATCCGAGGCTGG 60.203 66.667 0.00 0.00 39.50 4.85
197 210 0.720173 CTACGAAACAAACCACGCGC 60.720 55.000 5.73 0.00 0.00 6.86
205 218 2.907634 TCACAGCCACTACGAAACAAA 58.092 42.857 0.00 0.00 0.00 2.83
206 219 2.605837 TCACAGCCACTACGAAACAA 57.394 45.000 0.00 0.00 0.00 2.83
207 220 2.206750 GTTCACAGCCACTACGAAACA 58.793 47.619 0.00 0.00 0.00 2.83
208 221 1.191647 CGTTCACAGCCACTACGAAAC 59.808 52.381 0.00 0.00 34.36 2.78
209 222 1.493772 CGTTCACAGCCACTACGAAA 58.506 50.000 0.00 0.00 34.36 3.46
212 225 0.732880 CTCCGTTCACAGCCACTACG 60.733 60.000 0.00 0.00 0.00 3.51
218 231 2.811317 CGAGCTCCGTTCACAGCC 60.811 66.667 8.47 0.00 36.17 4.85
258 271 2.445682 AACCTAACCCACAGCAAACA 57.554 45.000 0.00 0.00 0.00 2.83
262 279 1.698506 CCAAAACCTAACCCACAGCA 58.301 50.000 0.00 0.00 0.00 4.41
266 283 0.966179 CAGGCCAAAACCTAACCCAC 59.034 55.000 5.01 0.00 38.26 4.61
335 360 4.172512 CAGCCAGCCTCCGAGCAT 62.173 66.667 0.00 0.00 34.23 3.79
434 467 5.352293 TGAACAGTGAGCATGTCATTCATAC 59.648 40.000 0.00 0.00 37.56 2.39
440 473 3.479489 TGTTGAACAGTGAGCATGTCAT 58.521 40.909 0.00 0.00 37.56 3.06
456 489 7.173218 GGATAACTGAAGAATGAACACTGTTGA 59.827 37.037 0.00 0.00 0.00 3.18
458 491 6.998074 TGGATAACTGAAGAATGAACACTGTT 59.002 34.615 0.00 0.00 0.00 3.16
509 543 7.881232 AGTCAGGACTATATTCCGTTTCAAAAA 59.119 33.333 0.00 0.00 40.43 1.94
510 544 7.391620 AGTCAGGACTATATTCCGTTTCAAAA 58.608 34.615 0.00 0.00 40.43 2.44
511 545 6.942976 AGTCAGGACTATATTCCGTTTCAAA 58.057 36.000 0.00 0.00 40.43 2.69
512 546 6.540438 AGTCAGGACTATATTCCGTTTCAA 57.460 37.500 0.00 0.00 40.43 2.69
513 547 6.380274 AGAAGTCAGGACTATATTCCGTTTCA 59.620 38.462 1.78 0.00 41.58 2.69
514 548 6.697892 CAGAAGTCAGGACTATATTCCGTTTC 59.302 42.308 1.78 6.65 41.58 2.78
515 549 6.380274 TCAGAAGTCAGGACTATATTCCGTTT 59.620 38.462 1.78 0.00 41.58 3.60
516 550 5.892119 TCAGAAGTCAGGACTATATTCCGTT 59.108 40.000 1.78 0.00 41.58 4.44
517 551 5.446860 TCAGAAGTCAGGACTATATTCCGT 58.553 41.667 1.78 0.00 41.58 4.69
518 552 6.582677 ATCAGAAGTCAGGACTATATTCCG 57.417 41.667 1.78 0.22 41.58 4.30
519 553 8.646900 AGAAATCAGAAGTCAGGACTATATTCC 58.353 37.037 1.78 0.79 41.58 3.01
520 554 9.474920 CAGAAATCAGAAGTCAGGACTATATTC 57.525 37.037 1.78 0.00 41.58 1.75
521 555 9.206690 TCAGAAATCAGAAGTCAGGACTATATT 57.793 33.333 1.78 0.00 41.58 1.28
522 556 8.774546 TCAGAAATCAGAAGTCAGGACTATAT 57.225 34.615 1.78 0.00 41.58 0.86
523 557 7.836685 ACTCAGAAATCAGAAGTCAGGACTATA 59.163 37.037 1.78 0.00 41.58 1.31
524 558 6.667414 ACTCAGAAATCAGAAGTCAGGACTAT 59.333 38.462 1.78 0.00 41.58 2.12
525 559 6.013379 ACTCAGAAATCAGAAGTCAGGACTA 58.987 40.000 1.78 0.00 41.58 2.59
526 560 4.837860 ACTCAGAAATCAGAAGTCAGGACT 59.162 41.667 0.00 0.00 44.94 3.85
527 561 5.146010 ACTCAGAAATCAGAAGTCAGGAC 57.854 43.478 0.00 0.00 0.00 3.85
528 562 4.221703 GGACTCAGAAATCAGAAGTCAGGA 59.778 45.833 0.00 0.00 0.00 3.86
529 563 4.222588 AGGACTCAGAAATCAGAAGTCAGG 59.777 45.833 0.00 0.00 0.00 3.86
530 564 5.185635 AGAGGACTCAGAAATCAGAAGTCAG 59.814 44.000 1.75 0.00 0.00 3.51
531 565 5.047448 CAGAGGACTCAGAAATCAGAAGTCA 60.047 44.000 1.75 0.00 0.00 3.41
532 566 5.047377 ACAGAGGACTCAGAAATCAGAAGTC 60.047 44.000 1.75 0.00 0.00 3.01
533 567 4.837860 ACAGAGGACTCAGAAATCAGAAGT 59.162 41.667 1.75 0.00 0.00 3.01
595 630 1.812571 GTGCGCCAAATATCCCATAGG 59.187 52.381 4.18 0.00 0.00 2.57
605 640 0.107897 TATCGGACAGTGCGCCAAAT 60.108 50.000 10.03 0.45 0.00 2.32
656 692 2.553172 GGTCACGACTCAGAACTACTGT 59.447 50.000 0.00 0.00 45.86 3.55
666 702 0.841289 AAAAAGGGGGTCACGACTCA 59.159 50.000 0.00 0.00 32.11 3.41
730 777 4.336433 CCGCCTTATGATGAAACAACTCAT 59.664 41.667 0.00 0.00 38.79 2.90
733 780 3.950397 TCCGCCTTATGATGAAACAACT 58.050 40.909 0.00 0.00 0.00 3.16
736 783 3.013921 GGTTCCGCCTTATGATGAAACA 58.986 45.455 0.00 0.00 0.00 2.83
746 793 0.538118 ATGCTAACGGTTCCGCCTTA 59.462 50.000 11.32 3.08 34.25 2.69
801 848 2.863809 AGCTAATAATTTGCTCCCGGG 58.136 47.619 16.85 16.85 30.41 5.73
835 882 9.229784 GCAGAAACACAATGTGATAAATGATAG 57.770 33.333 21.34 0.76 36.96 2.08
866 913 7.722285 AGAAACATAAGCCTAACCACAGTTTAA 59.278 33.333 0.00 0.00 37.42 1.52
870 917 5.003804 CAGAAACATAAGCCTAACCACAGT 58.996 41.667 0.00 0.00 0.00 3.55
920 967 2.095617 GTGCGGGTTTATACAACCACAC 60.096 50.000 16.77 16.77 42.03 3.82
921 968 2.152830 GTGCGGGTTTATACAACCACA 58.847 47.619 14.70 10.80 42.03 4.17
937 989 0.109272 ACACGTACCATCAGAGTGCG 60.109 55.000 0.00 0.00 46.82 5.34
949 1001 1.143969 GCTATGGTCGCCACACGTAC 61.144 60.000 0.50 0.00 44.19 3.67
959 1011 0.380733 TGCTACTGTCGCTATGGTCG 59.619 55.000 5.88 0.00 0.00 4.79
965 1017 0.661552 GGACGATGCTACTGTCGCTA 59.338 55.000 5.88 0.00 41.31 4.26
968 1020 1.402259 AGAAGGACGATGCTACTGTCG 59.598 52.381 0.00 0.00 43.13 4.35
976 1028 4.442706 TCTTATTTCCAGAAGGACGATGC 58.557 43.478 0.00 0.00 45.73 3.91
977 1029 5.907207 TCTCTTATTTCCAGAAGGACGATG 58.093 41.667 0.00 0.00 45.73 3.84
980 1032 5.053145 CCATCTCTTATTTCCAGAAGGACG 58.947 45.833 0.00 0.00 45.73 4.79
982 1034 7.403231 ACTTACCATCTCTTATTTCCAGAAGGA 59.597 37.037 0.00 0.00 43.93 3.36
1070 1146 4.172807 AGTAACTACCAATCCCCTGACAA 58.827 43.478 0.00 0.00 0.00 3.18
1071 1147 3.773119 GAGTAACTACCAATCCCCTGACA 59.227 47.826 0.00 0.00 0.00 3.58
1101 1177 2.972713 ACAAACTGAAGAGGAGCTACCA 59.027 45.455 0.00 0.00 42.04 3.25
1102 1178 3.686916 ACAAACTGAAGAGGAGCTACC 57.313 47.619 0.00 0.00 39.35 3.18
1103 1179 3.997681 GGAACAAACTGAAGAGGAGCTAC 59.002 47.826 0.00 0.00 0.00 3.58
1104 1180 3.904339 AGGAACAAACTGAAGAGGAGCTA 59.096 43.478 0.00 0.00 0.00 3.32
1105 1181 2.708325 AGGAACAAACTGAAGAGGAGCT 59.292 45.455 0.00 0.00 0.00 4.09
1106 1182 3.133141 AGGAACAAACTGAAGAGGAGC 57.867 47.619 0.00 0.00 0.00 4.70
1147 1223 0.918983 TTCTATGTGGCCCCTCAAGG 59.081 55.000 0.00 0.00 0.00 3.61
1150 1226 2.852449 AGAATTTCTATGTGGCCCCTCA 59.148 45.455 0.00 0.00 0.00 3.86
1159 1235 3.569491 CCATGGCCCAGAATTTCTATGT 58.431 45.455 0.00 0.00 0.00 2.29
1169 1245 4.746309 GCACAGCCATGGCCCAGA 62.746 66.667 33.14 0.00 43.17 3.86
1198 1274 3.331150 ACAACTCGTATCATTTTGCCGA 58.669 40.909 0.00 0.00 0.00 5.54
1200 1276 8.311650 AGATATACAACTCGTATCATTTTGCC 57.688 34.615 0.00 0.00 41.25 4.52
1222 1298 0.530650 CGCCGCATACCTCACAAGAT 60.531 55.000 0.00 0.00 0.00 2.40
1225 1301 1.004320 AACGCCGCATACCTCACAA 60.004 52.632 0.00 0.00 0.00 3.33
1269 1345 3.058224 ACTTTCAGCTTCATTGGCGTTAC 60.058 43.478 0.00 0.00 34.52 2.50
1274 1350 1.888512 TCCACTTTCAGCTTCATTGGC 59.111 47.619 0.00 0.00 0.00 4.52
1283 1359 3.308438 TTACGTACCTCCACTTTCAGC 57.692 47.619 0.00 0.00 0.00 4.26
1289 1365 5.259632 AGAACTACATTACGTACCTCCACT 58.740 41.667 0.00 0.00 0.00 4.00
1304 1380 5.874810 GGCAGACAATGTAATGAGAACTACA 59.125 40.000 2.65 0.00 32.79 2.74
1305 1381 6.109359 AGGCAGACAATGTAATGAGAACTAC 58.891 40.000 2.65 0.00 0.00 2.73
1308 1384 5.645497 AGAAGGCAGACAATGTAATGAGAAC 59.355 40.000 2.65 0.00 0.00 3.01
1313 1389 5.633830 ACAAGAAGGCAGACAATGTAATG 57.366 39.130 0.00 0.00 0.00 1.90
1314 1390 6.655078 AAACAAGAAGGCAGACAATGTAAT 57.345 33.333 0.00 0.00 0.00 1.89
1317 1393 4.160252 ACAAAACAAGAAGGCAGACAATGT 59.840 37.500 0.00 0.00 0.00 2.71
1322 1398 3.381590 AGGAACAAAACAAGAAGGCAGAC 59.618 43.478 0.00 0.00 0.00 3.51
1323 1399 3.381272 CAGGAACAAAACAAGAAGGCAGA 59.619 43.478 0.00 0.00 0.00 4.26
1327 1403 3.447229 ACCACAGGAACAAAACAAGAAGG 59.553 43.478 0.00 0.00 0.00 3.46
1330 1406 4.590918 TGTACCACAGGAACAAAACAAGA 58.409 39.130 0.00 0.00 0.00 3.02
1331 1407 4.920376 CTGTACCACAGGAACAAAACAAG 58.080 43.478 0.00 0.00 42.35 3.16
1501 1581 2.488204 TGTTGCCTCGAAATCCATCA 57.512 45.000 0.00 0.00 0.00 3.07
1587 1667 8.117813 GGTGTAATGTACCTATGTTATGGCACA 61.118 40.741 0.00 0.00 37.82 4.57
1589 1669 6.100569 AGGTGTAATGTACCTATGTTATGGCA 59.899 38.462 0.00 0.00 46.42 4.92
1654 1734 5.636837 GGAACATAAAGCTGCACGAAAATA 58.363 37.500 1.02 0.00 0.00 1.40
1657 1737 2.095969 CGGAACATAAAGCTGCACGAAA 60.096 45.455 1.02 0.00 0.00 3.46
1661 1741 2.989422 AACGGAACATAAAGCTGCAC 57.011 45.000 1.02 0.00 0.00 4.57
1808 1888 6.680810 TGCTTCACCATGTCTTAAAATGAAG 58.319 36.000 6.70 6.70 42.77 3.02
1815 1895 8.081633 CAGTTATTTTGCTTCACCATGTCTTAA 58.918 33.333 0.00 0.00 0.00 1.85
1821 1930 5.047802 AGGACAGTTATTTTGCTTCACCATG 60.048 40.000 0.00 0.00 0.00 3.66
1831 1940 5.633830 ATCTGCACAGGACAGTTATTTTG 57.366 39.130 0.00 0.00 36.50 2.44
1835 1944 6.042552 AGCTATAATCTGCACAGGACAGTTAT 59.957 38.462 0.00 0.00 36.50 1.89
2080 2198 9.474313 AGCAATAGAATGTTTACCTAAATTCCA 57.526 29.630 0.00 0.00 0.00 3.53
2084 2202 9.474313 TCCAAGCAATAGAATGTTTACCTAAAT 57.526 29.630 0.00 0.00 0.00 1.40
2085 2203 8.871629 TCCAAGCAATAGAATGTTTACCTAAA 57.128 30.769 0.00 0.00 0.00 1.85
2086 2204 8.871629 TTCCAAGCAATAGAATGTTTACCTAA 57.128 30.769 0.00 0.00 0.00 2.69
2087 2205 9.474313 AATTCCAAGCAATAGAATGTTTACCTA 57.526 29.630 0.00 0.00 30.80 3.08
2088 2206 7.961326 ATTCCAAGCAATAGAATGTTTACCT 57.039 32.000 0.00 0.00 0.00 3.08
2092 2210 8.815912 ACCTAAATTCCAAGCAATAGAATGTTT 58.184 29.630 0.00 0.00 30.80 2.83
2093 2211 8.366359 ACCTAAATTCCAAGCAATAGAATGTT 57.634 30.769 0.00 0.00 30.80 2.71
2094 2212 7.961326 ACCTAAATTCCAAGCAATAGAATGT 57.039 32.000 0.00 0.00 30.80 2.71
2210 2328 6.447084 ACAAGAAGTAATATGGAAAGGAGGGA 59.553 38.462 0.00 0.00 0.00 4.20
2211 2329 6.663734 ACAAGAAGTAATATGGAAAGGAGGG 58.336 40.000 0.00 0.00 0.00 4.30
2212 2330 8.487028 AGTACAAGAAGTAATATGGAAAGGAGG 58.513 37.037 0.00 0.00 33.72 4.30
2223 2341 9.512435 GTCGCTGATTTAGTACAAGAAGTAATA 57.488 33.333 0.00 0.00 33.72 0.98
2224 2342 7.220300 CGTCGCTGATTTAGTACAAGAAGTAAT 59.780 37.037 0.00 0.00 33.72 1.89
2225 2343 6.525628 CGTCGCTGATTTAGTACAAGAAGTAA 59.474 38.462 0.00 0.00 33.72 2.24
2226 2344 6.025896 CGTCGCTGATTTAGTACAAGAAGTA 58.974 40.000 0.00 0.00 0.00 2.24
2227 2345 4.857588 CGTCGCTGATTTAGTACAAGAAGT 59.142 41.667 0.00 0.00 0.00 3.01
2228 2346 5.093457 TCGTCGCTGATTTAGTACAAGAAG 58.907 41.667 0.00 0.00 0.00 2.85
2229 2347 5.050644 TCGTCGCTGATTTAGTACAAGAA 57.949 39.130 0.00 0.00 0.00 2.52
2230 2348 4.155462 ACTCGTCGCTGATTTAGTACAAGA 59.845 41.667 0.00 0.00 0.00 3.02
2231 2349 4.413087 ACTCGTCGCTGATTTAGTACAAG 58.587 43.478 0.00 0.00 0.00 3.16
2232 2350 4.430137 ACTCGTCGCTGATTTAGTACAA 57.570 40.909 0.00 0.00 0.00 2.41
2233 2351 5.550232 TTACTCGTCGCTGATTTAGTACA 57.450 39.130 0.00 0.00 0.00 2.90
2234 2352 7.270793 CCATATTACTCGTCGCTGATTTAGTAC 59.729 40.741 0.00 0.00 0.00 2.73
2235 2353 7.173735 TCCATATTACTCGTCGCTGATTTAGTA 59.826 37.037 0.00 0.00 0.00 1.82
2236 2354 6.016527 TCCATATTACTCGTCGCTGATTTAGT 60.017 38.462 0.00 0.00 0.00 2.24
2237 2355 6.379386 TCCATATTACTCGTCGCTGATTTAG 58.621 40.000 0.00 0.00 0.00 1.85
2238 2356 6.321848 TCCATATTACTCGTCGCTGATTTA 57.678 37.500 0.00 0.00 0.00 1.40
2239 2357 5.196341 TCCATATTACTCGTCGCTGATTT 57.804 39.130 0.00 0.00 0.00 2.17
2240 2358 4.848562 TCCATATTACTCGTCGCTGATT 57.151 40.909 0.00 0.00 0.00 2.57
2241 2359 4.547532 GTTCCATATTACTCGTCGCTGAT 58.452 43.478 0.00 0.00 0.00 2.90
2242 2360 3.547413 CGTTCCATATTACTCGTCGCTGA 60.547 47.826 0.00 0.00 0.00 4.26
2243 2361 2.719556 CGTTCCATATTACTCGTCGCTG 59.280 50.000 0.00 0.00 0.00 5.18
2244 2362 2.287427 CCGTTCCATATTACTCGTCGCT 60.287 50.000 0.00 0.00 0.00 4.93
2245 2363 2.049228 CCGTTCCATATTACTCGTCGC 58.951 52.381 0.00 0.00 0.00 5.19
2246 2364 3.552541 CTCCGTTCCATATTACTCGTCG 58.447 50.000 0.00 0.00 0.00 5.12
2247 2365 3.305199 CCCTCCGTTCCATATTACTCGTC 60.305 52.174 0.00 0.00 0.00 4.20
2248 2366 2.626743 CCCTCCGTTCCATATTACTCGT 59.373 50.000 0.00 0.00 0.00 4.18
2249 2367 2.889045 TCCCTCCGTTCCATATTACTCG 59.111 50.000 0.00 0.00 0.00 4.18
2250 2368 3.896272 ACTCCCTCCGTTCCATATTACTC 59.104 47.826 0.00 0.00 0.00 2.59
2251 2369 3.924922 ACTCCCTCCGTTCCATATTACT 58.075 45.455 0.00 0.00 0.00 2.24
2252 2370 4.021632 GGTACTCCCTCCGTTCCATATTAC 60.022 50.000 0.00 0.00 0.00 1.89
2253 2371 4.140853 AGGTACTCCCTCCGTTCCATATTA 60.141 45.833 0.00 0.00 40.71 0.98
2254 2372 2.970640 GGTACTCCCTCCGTTCCATATT 59.029 50.000 0.00 0.00 0.00 1.28
2255 2373 2.179424 AGGTACTCCCTCCGTTCCATAT 59.821 50.000 0.00 0.00 40.71 1.78
2256 2374 1.572415 AGGTACTCCCTCCGTTCCATA 59.428 52.381 0.00 0.00 40.71 2.74
2257 2375 0.338814 AGGTACTCCCTCCGTTCCAT 59.661 55.000 0.00 0.00 40.71 3.41
2258 2376 0.613853 CAGGTACTCCCTCCGTTCCA 60.614 60.000 0.00 0.00 43.86 3.53
2259 2377 0.614134 ACAGGTACTCCCTCCGTTCC 60.614 60.000 0.00 0.00 43.86 3.62
2260 2378 1.264295 AACAGGTACTCCCTCCGTTC 58.736 55.000 0.00 0.00 43.86 3.95
2261 2379 1.346722 CAAACAGGTACTCCCTCCGTT 59.653 52.381 0.00 0.00 43.86 4.44
2262 2380 0.974383 CAAACAGGTACTCCCTCCGT 59.026 55.000 0.00 0.00 43.86 4.69
2263 2381 0.391263 GCAAACAGGTACTCCCTCCG 60.391 60.000 0.00 0.00 43.86 4.63
2264 2382 0.984995 AGCAAACAGGTACTCCCTCC 59.015 55.000 0.00 0.00 43.86 4.30
2265 2383 2.038557 TCAAGCAAACAGGTACTCCCTC 59.961 50.000 0.00 0.00 43.86 4.30
2267 2385 2.561478 TCAAGCAAACAGGTACTCCC 57.439 50.000 0.00 0.00 34.60 4.30
2268 2386 4.508124 CGATATCAAGCAAACAGGTACTCC 59.492 45.833 3.12 0.00 34.60 3.85
2269 2387 5.109903 ACGATATCAAGCAAACAGGTACTC 58.890 41.667 3.12 0.00 34.60 2.59
2270 2388 5.086104 ACGATATCAAGCAAACAGGTACT 57.914 39.130 3.12 0.00 43.88 2.73
2271 2389 5.581085 AGAACGATATCAAGCAAACAGGTAC 59.419 40.000 3.12 0.00 0.00 3.34
2272 2390 5.580691 CAGAACGATATCAAGCAAACAGGTA 59.419 40.000 3.12 0.00 0.00 3.08
2273 2391 4.393062 CAGAACGATATCAAGCAAACAGGT 59.607 41.667 3.12 0.00 0.00 4.00
2391 2509 6.097839 ACGATTTTAAGCCTGTAGAGACCATA 59.902 38.462 0.00 0.00 0.00 2.74
2530 2654 4.942761 AGTTCCACATGAGTTTGCAAAT 57.057 36.364 16.21 4.49 0.00 2.32
2538 2662 6.119536 TCAACTACAAAAGTTCCACATGAGT 58.880 36.000 0.00 0.00 45.64 3.41
2578 2702 5.882557 ACTGGTTATGCTTAAAGATGTGAGG 59.117 40.000 0.00 0.00 0.00 3.86
2677 2801 5.774690 ACATTGGACCAAATGTTATCTGTGT 59.225 36.000 11.82 4.00 46.19 3.72
2756 2880 5.438761 ACTTGCAGTGTGGAAATTAACTC 57.561 39.130 0.00 0.00 0.00 3.01
2793 3033 7.165485 AGTCAATATGCAACACTACCAAGTAA 58.835 34.615 0.00 0.00 33.48 2.24
2862 3102 1.991813 TCACCCATCACCATCTTTCCA 59.008 47.619 0.00 0.00 0.00 3.53
2890 3130 8.086522 TGTACTTGTATCCTTCTCAACTACAAC 58.913 37.037 0.00 0.00 31.17 3.32
2943 3183 5.013183 ACTGCTACTATTTCCACCAAGTTCT 59.987 40.000 0.00 0.00 0.00 3.01
3084 3324 0.602905 ACGGTTCTGGCTTGTACTGC 60.603 55.000 0.00 0.00 0.00 4.40
3118 3358 7.856415 AGTTGTCTAGGCATTTCTAGATCTTT 58.144 34.615 0.00 0.00 44.97 2.52
3125 3365 9.383519 CAAGATTTAGTTGTCTAGGCATTTCTA 57.616 33.333 0.00 0.00 0.00 2.10
3208 3450 6.149474 CAGGACAAGACCAACTTAATACCTTG 59.851 42.308 0.00 0.00 37.03 3.61
3217 3459 1.212935 AGCACAGGACAAGACCAACTT 59.787 47.619 0.00 0.00 39.70 2.66
3266 3508 6.007076 TCAACATGACCAACCTAGCAATAAA 58.993 36.000 0.00 0.00 0.00 1.40
3390 3638 8.680903 AGGCTGAAAATATTGATCACTAAACTG 58.319 33.333 0.00 0.00 0.00 3.16
3392 3640 8.897752 AGAGGCTGAAAATATTGATCACTAAAC 58.102 33.333 0.00 0.00 0.00 2.01
3393 3641 8.896744 CAGAGGCTGAAAATATTGATCACTAAA 58.103 33.333 0.00 0.00 32.44 1.85
3394 3642 8.049117 ACAGAGGCTGAAAATATTGATCACTAA 58.951 33.333 0.00 0.00 35.18 2.24
3395 3643 7.568349 ACAGAGGCTGAAAATATTGATCACTA 58.432 34.615 0.00 0.00 35.18 2.74
3396 3644 6.421485 ACAGAGGCTGAAAATATTGATCACT 58.579 36.000 0.00 0.00 35.18 3.41
3397 3645 6.690194 ACAGAGGCTGAAAATATTGATCAC 57.310 37.500 0.00 0.00 35.18 3.06
3589 3837 0.764890 CTTTGTGACCAGGGGAGTCA 59.235 55.000 0.00 0.00 41.84 3.41
3613 3861 6.611236 TCACTCCAGATATCATGTTAGGAACA 59.389 38.462 5.32 0.00 46.94 3.18
3655 3903 3.177228 AGAGGCATCAACAACTAGGACT 58.823 45.455 0.00 0.00 0.00 3.85
3796 4044 1.597663 CGTTCTGCCGAATATTCCACC 59.402 52.381 9.87 0.00 0.00 4.61
3877 4125 0.255033 AAGGAACCCAGGTTATCGCC 59.745 55.000 1.09 0.00 38.60 5.54
3933 4181 6.238869 CCATGATGAGAGACGAGTATCTGAAA 60.239 42.308 5.01 0.00 30.29 2.69
3989 4237 8.398665 AGAAGTTGTCGAAATAGAAATAATGCC 58.601 33.333 0.00 0.00 0.00 4.40
3997 4245 5.849510 TGACCAGAAGTTGTCGAAATAGAA 58.150 37.500 0.00 0.00 34.18 2.10
4007 4255 9.988815 GATTATATACTGATGACCAGAAGTTGT 57.011 33.333 0.00 0.00 45.78 3.32
4164 4412 0.107116 TACCACAAACCGCCACTTGT 60.107 50.000 0.00 0.00 36.19 3.16
4206 4454 5.763204 TCAGTGTTTTACCTTGGAATCACTC 59.237 40.000 0.00 0.00 35.00 3.51
4226 4474 8.627208 ATGACTGTCAGAACATAAATTTCAGT 57.373 30.769 16.46 0.00 36.54 3.41
4230 4478 8.873830 CGAGTATGACTGTCAGAACATAAATTT 58.126 33.333 21.18 0.00 34.13 1.82
4240 4488 2.820197 AGCAACGAGTATGACTGTCAGA 59.180 45.455 16.46 8.98 0.00 3.27
4243 4491 4.992381 AAAAGCAACGAGTATGACTGTC 57.008 40.909 0.00 0.00 0.00 3.51
4304 4552 6.377327 TTCTGCTTCGAAACAAAAGAGATT 57.623 33.333 2.46 0.00 0.00 2.40
4308 4556 4.290155 GCATTCTGCTTCGAAACAAAAGA 58.710 39.130 2.46 0.00 40.96 2.52
4310 4558 3.068024 AGGCATTCTGCTTCGAAACAAAA 59.932 39.130 2.46 0.00 44.28 2.44
4364 4612 5.065914 TGCAATTATTGAGCAGGGTAGATC 58.934 41.667 9.36 0.00 33.75 2.75
4466 4715 2.060050 TCACTGTAGCTAGCTCTCCC 57.940 55.000 23.26 8.54 0.00 4.30
4529 4778 0.109827 CAATCGCAATGTTGTCGCCA 60.110 50.000 5.22 0.00 0.00 5.69
4574 4823 1.153823 GACTCCACCCGACATCACG 60.154 63.158 0.00 0.00 0.00 4.35
4601 4850 1.143183 CGACACGGGGTAATCTGGG 59.857 63.158 0.00 0.00 0.00 4.45
4664 4913 0.830866 GGCCCGGCAGTATAGGTACT 60.831 60.000 12.58 0.00 41.84 2.73
4738 4987 7.229907 TGGCACGACATTAGTAACTCTATATGA 59.770 37.037 0.00 0.00 0.00 2.15
4739 4988 7.368059 TGGCACGACATTAGTAACTCTATATG 58.632 38.462 0.00 0.00 0.00 1.78
4740 4989 7.520451 TGGCACGACATTAGTAACTCTATAT 57.480 36.000 0.00 0.00 0.00 0.86
4741 4990 6.947644 TGGCACGACATTAGTAACTCTATA 57.052 37.500 0.00 0.00 0.00 1.31
4774 5023 1.170919 AGCGACCAGTACGTCAGTGT 61.171 55.000 0.00 0.00 32.74 3.55
4866 5116 3.519973 CTGGTCCAGCAGCGACACA 62.520 63.158 5.79 0.00 31.55 3.72
4926 5176 4.728110 ATGGCAGCCTGCTTCGCA 62.728 61.111 17.55 6.22 44.28 5.10
4929 5179 2.437359 ACGATGGCAGCCTGCTTC 60.437 61.111 17.55 12.69 44.28 3.86
4931 5181 4.827087 CGACGATGGCAGCCTGCT 62.827 66.667 17.55 0.00 44.28 4.24
4954 5204 2.621542 CGCACGCGTAACACAACA 59.378 55.556 13.44 0.00 34.35 3.33
4959 5209 3.570621 TAAGGGCGCACGCGTAACA 62.571 57.895 13.44 0.00 43.06 2.41
4966 5216 3.490759 CTGCTGTAAGGGCGCACG 61.491 66.667 10.83 0.00 0.00 5.34
5030 5280 3.360867 TCCAGCTTCACCTGAACAAAAA 58.639 40.909 0.00 0.00 34.77 1.94
5157 5407 2.045926 CCCTGTACCTGCACCTGC 60.046 66.667 0.00 0.00 42.50 4.85
5158 5408 2.671070 CCCCTGTACCTGCACCTG 59.329 66.667 0.00 0.00 0.00 4.00
5159 5409 2.610859 CCCCCTGTACCTGCACCT 60.611 66.667 0.00 0.00 0.00 4.00
5160 5410 2.609610 TCCCCCTGTACCTGCACC 60.610 66.667 0.00 0.00 0.00 5.01
5161 5411 2.990479 CTCCCCCTGTACCTGCAC 59.010 66.667 0.00 0.00 0.00 4.57
5162 5412 3.009115 GCTCCCCCTGTACCTGCA 61.009 66.667 0.00 0.00 0.00 4.41
5195 5445 3.799755 CTGCCAACGCGCCCTAAC 61.800 66.667 5.73 0.00 38.08 2.34
5220 5490 6.224420 TGACGACGAGTATATGTCTGTATG 57.776 41.667 0.00 0.00 32.93 2.39
5222 5492 4.748600 CCTGACGACGAGTATATGTCTGTA 59.251 45.833 0.00 0.00 32.93 2.74
5230 5500 2.558378 CCTGACCTGACGACGAGTATA 58.442 52.381 0.00 0.00 0.00 1.47
5232 5502 0.675837 CCCTGACCTGACGACGAGTA 60.676 60.000 0.00 0.00 0.00 2.59
5291 5587 4.498520 AGCGAGTGGACGATGCCG 62.499 66.667 0.00 0.00 42.50 5.69
5292 5588 2.583593 GAGCGAGTGGACGATGCC 60.584 66.667 0.00 0.00 35.09 4.40
5294 5590 0.799917 CAGTGAGCGAGTGGACGATG 60.800 60.000 0.00 0.00 35.09 3.84
5296 5592 1.452953 AACAGTGAGCGAGTGGACGA 61.453 55.000 0.00 0.00 35.09 4.20
5298 5594 1.004277 CGAACAGTGAGCGAGTGGAC 61.004 60.000 0.00 0.00 0.00 4.02
5299 5595 1.285950 CGAACAGTGAGCGAGTGGA 59.714 57.895 0.00 0.00 0.00 4.02
5429 5738 0.744281 AACACCGACCCAAAAGCAAG 59.256 50.000 0.00 0.00 0.00 4.01
5508 5817 4.619227 CGCCAACCACCACCTCGT 62.619 66.667 0.00 0.00 0.00 4.18
5642 6001 2.098770 GCAACAGGAGGAATTCATCAGC 59.901 50.000 20.69 12.15 0.00 4.26
5735 6094 2.148365 GTAGTGCACGTACGGCGAC 61.148 63.158 21.06 17.68 44.77 5.19
5740 6109 1.197492 TGGTACTGTAGTGCACGTACG 59.803 52.381 15.01 15.01 37.69 3.67
5742 6111 1.200716 GCTGGTACTGTAGTGCACGTA 59.799 52.381 12.01 4.66 32.02 3.57
5763 6132 3.877612 TTGCATTGCACTGCGTCGC 62.878 57.895 22.16 11.10 45.30 5.19
5764 6133 1.370293 TTTGCATTGCACTGCGTCG 60.370 52.632 22.16 0.00 45.30 5.12
5765 6134 1.599422 CGTTTGCATTGCACTGCGTC 61.599 55.000 22.16 14.04 45.30 5.19
5766 6135 1.658102 CGTTTGCATTGCACTGCGT 60.658 52.632 22.16 0.00 45.30 5.24
5767 6136 0.730155 ATCGTTTGCATTGCACTGCG 60.730 50.000 22.16 15.22 45.30 5.18
5768 6137 1.387756 GAATCGTTTGCATTGCACTGC 59.612 47.619 21.14 21.14 38.71 4.40
5769 6138 2.937591 AGAATCGTTTGCATTGCACTG 58.062 42.857 11.66 4.25 38.71 3.66
5770 6139 3.568538 GAAGAATCGTTTGCATTGCACT 58.431 40.909 11.66 0.00 38.71 4.40
5771 6140 2.663119 GGAAGAATCGTTTGCATTGCAC 59.337 45.455 11.66 0.00 38.71 4.57
5772 6141 2.668001 CGGAAGAATCGTTTGCATTGCA 60.668 45.455 7.38 7.38 36.47 4.08
5774 6143 3.163594 GACGGAAGAATCGTTTGCATTG 58.836 45.455 0.00 0.00 41.22 2.82
5775 6144 2.161609 GGACGGAAGAATCGTTTGCATT 59.838 45.455 0.00 0.00 41.22 3.56
5776 6145 1.737793 GGACGGAAGAATCGTTTGCAT 59.262 47.619 0.00 0.00 41.22 3.96
5777 6146 1.153353 GGACGGAAGAATCGTTTGCA 58.847 50.000 0.00 0.00 41.22 4.08
5778 6147 0.446616 GGGACGGAAGAATCGTTTGC 59.553 55.000 0.00 0.00 41.22 3.68
5779 6148 1.732259 CAGGGACGGAAGAATCGTTTG 59.268 52.381 0.00 0.00 41.22 2.93
5781 6150 0.974383 ACAGGGACGGAAGAATCGTT 59.026 50.000 0.00 0.00 41.22 3.85
5784 6153 3.604875 TGTTACAGGGACGGAAGAATC 57.395 47.619 0.00 0.00 0.00 2.52
5785 6154 3.517901 TCATGTTACAGGGACGGAAGAAT 59.482 43.478 0.00 0.00 0.00 2.40
5787 6156 2.531771 TCATGTTACAGGGACGGAAGA 58.468 47.619 0.00 0.00 0.00 2.87
5788 6157 3.543680 ATCATGTTACAGGGACGGAAG 57.456 47.619 0.00 0.00 0.00 3.46
5789 6158 3.262151 TGAATCATGTTACAGGGACGGAA 59.738 43.478 0.00 0.00 0.00 4.30
5790 6159 2.835156 TGAATCATGTTACAGGGACGGA 59.165 45.455 0.00 0.00 0.00 4.69
5791 6160 3.198068 CTGAATCATGTTACAGGGACGG 58.802 50.000 0.00 0.00 0.00 4.79
5792 6161 3.861840 ACTGAATCATGTTACAGGGACG 58.138 45.455 15.54 0.00 35.08 4.79
5796 6197 4.633126 CCACTGACTGAATCATGTTACAGG 59.367 45.833 15.54 0.00 36.48 4.00
5806 6207 5.220548 CGTTGAATCATCCACTGACTGAATC 60.221 44.000 0.00 0.00 36.48 2.52
5809 6210 3.258123 TCGTTGAATCATCCACTGACTGA 59.742 43.478 0.00 0.00 36.48 3.41
5811 6212 3.006859 TGTCGTTGAATCATCCACTGACT 59.993 43.478 8.65 0.00 36.48 3.41
5819 6220 3.624861 AGAAGCCATGTCGTTGAATCATC 59.375 43.478 0.00 0.00 0.00 2.92
5845 6246 3.623848 AGTGCCATACGCTTGTGAA 57.376 47.368 0.00 0.00 34.73 3.18
5854 6255 3.403038 ACTCAACTCACAAGTGCCATAC 58.597 45.455 0.00 0.00 35.36 2.39
5856 6257 2.620115 CAACTCAACTCACAAGTGCCAT 59.380 45.455 0.00 0.00 35.36 4.40
5858 6259 2.017049 ACAACTCAACTCACAAGTGCC 58.983 47.619 0.00 0.00 35.36 5.01
5891 6462 2.124819 CTCAGGCCAGCGCTCAAT 60.125 61.111 7.13 0.00 34.44 2.57
5919 6495 0.899717 GCCATGGCCCTCTGACAAAA 60.900 55.000 27.24 0.00 34.56 2.44
5950 6526 2.669924 CCATGATTGTGTCTGTCGTGAG 59.330 50.000 0.00 0.00 32.03 3.51
5958 6534 2.304761 ACGGTTACCCATGATTGTGTCT 59.695 45.455 0.00 0.00 0.00 3.41
6012 6588 2.125350 GCAGCAGCTAAGCTCGGT 60.125 61.111 0.00 0.00 44.54 4.69
6066 6650 9.046846 TCCCATCGATCCTTTTATTAGATGTAT 57.953 33.333 0.00 0.00 34.05 2.29
6067 6651 8.311836 GTCCCATCGATCCTTTTATTAGATGTA 58.688 37.037 0.00 0.00 34.05 2.29
6162 6746 1.501337 TTCAGTTCAGTGCAGCGCAG 61.501 55.000 11.47 1.31 40.08 5.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.