Multiple sequence alignment - TraesCS2A01G591900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G591900 chr2A 100.000 4648 0 0 1 4648 779291761 779296408 0.000000e+00 8584.0
1 TraesCS2A01G591900 chr2A 96.552 406 14 0 4243 4648 209253932 209254337 0.000000e+00 673.0
2 TraesCS2A01G591900 chr2A 96.560 407 12 2 4243 4648 673969966 673969561 0.000000e+00 673.0
3 TraesCS2A01G591900 chr2A 85.641 195 13 6 4066 4245 643006843 643006649 1.710000e-44 191.0
4 TraesCS2A01G591900 chr2B 92.922 1752 70 23 482 2188 777172114 777170372 0.000000e+00 2499.0
5 TraesCS2A01G591900 chr2B 88.985 808 52 21 3136 3912 777169663 777168862 0.000000e+00 965.0
6 TraesCS2A01G591900 chr2B 96.161 573 17 2 2241 2808 777170252 777169680 0.000000e+00 931.0
7 TraesCS2A01G591900 chr2B 87.500 192 10 4 4068 4245 741479966 741480157 4.710000e-50 209.0
8 TraesCS2A01G591900 chr2B 92.771 83 6 0 1 83 777281702 777281620 2.270000e-23 121.0
9 TraesCS2A01G591900 chr2D 92.499 1693 61 22 533 2201 634258577 634256927 0.000000e+00 2362.0
10 TraesCS2A01G591900 chr2D 95.904 708 28 1 3139 3846 634256145 634255439 0.000000e+00 1146.0
11 TraesCS2A01G591900 chr2D 95.804 572 13 6 2211 2775 634256826 634256259 0.000000e+00 913.0
12 TraesCS2A01G591900 chr2D 90.169 356 32 3 10 365 634258974 634258622 1.180000e-125 460.0
13 TraesCS2A01G591900 chr2D 86.792 265 33 2 2859 3121 588717785 588718049 1.260000e-75 294.0
14 TraesCS2A01G591900 chr5A 89.254 1005 78 18 1786 2770 584966281 584967275 0.000000e+00 1230.0
15 TraesCS2A01G591900 chr5A 92.871 505 31 3 3150 3650 584967349 584967852 0.000000e+00 728.0
16 TraesCS2A01G591900 chr5A 96.552 406 14 0 4243 4648 580553672 580553267 0.000000e+00 673.0
17 TraesCS2A01G591900 chr5A 96.059 406 16 0 4243 4648 632293400 632292995 0.000000e+00 662.0
18 TraesCS2A01G591900 chr5A 96.059 406 16 0 4243 4648 675516714 675516309 0.000000e+00 662.0
19 TraesCS2A01G591900 chr5A 96.795 312 8 1 1378 1687 584965902 584966213 1.920000e-143 520.0
20 TraesCS2A01G591900 chr5A 85.098 255 29 7 998 1244 584965579 584965832 7.720000e-63 252.0
21 TraesCS2A01G591900 chr5A 89.005 191 5 3 4070 4245 99589132 99589321 6.050000e-54 222.0
22 TraesCS2A01G591900 chr5A 86.567 201 27 0 1487 1687 585234689 585234889 6.050000e-54 222.0
23 TraesCS2A01G591900 chr5A 80.065 306 47 13 1389 1687 585396827 585397125 1.010000e-51 215.0
24 TraesCS2A01G591900 chr5A 87.958 191 8 4 4070 4245 675516949 675516759 1.310000e-50 211.0
25 TraesCS2A01G591900 chr5A 82.759 87 15 0 2426 2512 585235784 585235870 1.390000e-10 78.7
26 TraesCS2A01G591900 chr5D 88.583 1016 85 20 1779 2770 464492056 464493064 0.000000e+00 1205.0
27 TraesCS2A01G591900 chr5D 93.056 504 32 1 3150 3650 464493156 464493659 0.000000e+00 734.0
28 TraesCS2A01G591900 chr5D 96.154 312 10 1 1378 1687 464491658 464491969 4.150000e-140 508.0
29 TraesCS2A01G591900 chr5D 80.739 379 70 3 3257 3633 464605937 464606314 4.550000e-75 292.0
30 TraesCS2A01G591900 chr5D 87.251 251 27 5 998 1244 464491357 464491606 9.850000e-72 281.0
31 TraesCS2A01G591900 chr5D 80.328 305 48 12 1389 1687 464990558 464990856 2.180000e-53 220.0
32 TraesCS2A01G591900 chr5D 85.644 202 29 0 1487 1688 464916937 464917138 3.640000e-51 213.0
33 TraesCS2A01G591900 chr5D 82.828 99 17 0 1099 1197 464990419 464990517 6.410000e-14 89.8
34 TraesCS2A01G591900 chr5D 83.908 87 14 0 2426 2512 464918060 464918146 2.980000e-12 84.2
35 TraesCS2A01G591900 chr5B 91.682 529 41 3 2243 2770 571835770 571835244 0.000000e+00 730.0
36 TraesCS2A01G591900 chr5B 92.629 502 34 1 3150 3648 571835147 571834646 0.000000e+00 719.0
37 TraesCS2A01G591900 chr5B 84.829 613 40 21 4070 4641 527332027 527331427 6.750000e-158 568.0
38 TraesCS2A01G591900 chr5B 92.079 404 26 4 1780 2183 571836255 571835858 8.730000e-157 564.0
39 TraesCS2A01G591900 chr5B 96.795 312 8 1 1378 1687 571836684 571836373 1.920000e-143 520.0
40 TraesCS2A01G591900 chr5B 87.500 200 25 0 1488 1687 572342096 572342295 1.010000e-56 231.0
41 TraesCS2A01G591900 chr5B 77.628 371 83 0 3257 3627 572127285 572127655 4.680000e-55 226.0
42 TraesCS2A01G591900 chr5B 85.990 207 26 1 1038 1244 571836945 571836742 7.830000e-53 219.0
43 TraesCS2A01G591900 chr5B 85.644 202 29 0 1487 1688 572142160 572142361 3.640000e-51 213.0
44 TraesCS2A01G591900 chr5B 85.057 87 13 0 2426 2512 572143285 572143371 6.410000e-14 89.8
45 TraesCS2A01G591900 chr5B 81.818 99 18 0 1099 1197 572341858 572341956 2.980000e-12 84.2
46 TraesCS2A01G591900 chr7A 96.305 406 15 0 4243 4648 7868553 7868958 0.000000e+00 667.0
47 TraesCS2A01G591900 chr7A 89.474 266 26 1 2858 3121 730603254 730602989 7.450000e-88 335.0
48 TraesCS2A01G591900 chr3A 96.305 406 15 0 4243 4648 588518764 588519169 0.000000e+00 667.0
49 TraesCS2A01G591900 chr3A 96.305 406 15 0 4243 4648 720874966 720875371 0.000000e+00 667.0
50 TraesCS2A01G591900 chr3A 96.059 406 16 0 4243 4648 720971114 720971519 0.000000e+00 662.0
51 TraesCS2A01G591900 chr3A 91.620 179 12 2 4070 4245 706265782 706265960 1.290000e-60 244.0
52 TraesCS2A01G591900 chr3A 88.832 197 7 5 4064 4245 66053482 66053286 1.300000e-55 228.0
53 TraesCS2A01G591900 chr3A 88.947 190 7 3 4070 4245 550064764 550064953 6.050000e-54 222.0
54 TraesCS2A01G591900 chr3A 85.496 131 18 1 362 491 24786497 24786367 8.110000e-28 135.0
55 TraesCS2A01G591900 chr4A 81.375 451 41 17 4066 4498 727723568 727723143 1.250000e-85 327.0
56 TraesCS2A01G591900 chr4A 86.038 265 35 2 2859 3121 163869831 163869567 2.740000e-72 283.0
57 TraesCS2A01G591900 chr3B 87.591 274 31 3 2860 3131 706530448 706530176 9.710000e-82 315.0
58 TraesCS2A01G591900 chr3B 85.556 270 37 2 2859 3126 798972918 798973187 9.850000e-72 281.0
59 TraesCS2A01G591900 chr3B 84.848 132 17 3 360 491 739874422 739874294 3.770000e-26 130.0
60 TraesCS2A01G591900 chr3B 83.459 133 21 1 360 491 716301712 716301580 6.320000e-24 122.0
61 TraesCS2A01G591900 chr1A 87.970 266 30 2 2858 3121 329013942 329013677 3.490000e-81 313.0
62 TraesCS2A01G591900 chr1A 89.005 191 4 6 4071 4245 511249927 511249738 2.180000e-53 220.0
63 TraesCS2A01G591900 chr7B 85.985 264 35 2 2860 3121 2765532 2765269 9.850000e-72 281.0
64 TraesCS2A01G591900 chr6B 85.714 266 35 3 2858 3121 548838490 548838754 1.270000e-70 278.0
65 TraesCS2A01G591900 chr1B 85.393 267 36 3 2860 3124 595445091 595444826 1.650000e-69 274.0
66 TraesCS2A01G591900 chr1B 87.374 198 9 3 4064 4245 550381894 550381697 3.640000e-51 213.0
67 TraesCS2A01G591900 chr1B 87.435 191 9 2 4070 4245 564794338 564794528 6.100000e-49 206.0
68 TraesCS2A01G591900 chr1B 86.458 192 12 1 4068 4245 36019682 36019491 1.020000e-46 198.0
69 TraesCS2A01G591900 chr6A 88.083 193 8 2 4068 4245 87272066 87271874 1.010000e-51 215.0
70 TraesCS2A01G591900 chr6A 87.629 194 8 6 4068 4245 600329481 600329288 1.310000e-50 211.0
71 TraesCS2A01G591900 chr6A 84.729 203 16 2 4058 4245 451444502 451444704 6.140000e-44 189.0
72 TraesCS2A01G591900 chr6A 87.273 55 7 0 309 363 499820753 499820807 3.880000e-06 63.9
73 TraesCS2A01G591900 chrUn 87.179 195 10 2 4066 4245 266374184 266373990 1.690000e-49 207.0
74 TraesCS2A01G591900 chr4B 86.224 196 10 2 4067 4245 579411794 579411989 3.670000e-46 196.0
75 TraesCS2A01G591900 chr4B 85.492 193 13 2 4068 4245 413113223 413113031 2.210000e-43 187.0
76 TraesCS2A01G591900 chr4B 87.255 102 13 0 397 498 43107334 43107233 2.940000e-22 117.0
77 TraesCS2A01G591900 chr3D 84.848 132 18 2 361 491 394142982 394142852 1.050000e-26 132.0
78 TraesCS2A01G591900 chr3D 82.443 131 22 1 361 491 98538329 98538200 3.800000e-21 113.0
79 TraesCS2A01G591900 chr1D 83.117 77 8 2 411 482 464603830 464603906 1.080000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G591900 chr2A 779291761 779296408 4647 False 8584.00 8584 100.000000 1 4648 1 chr2A.!!$F2 4647
1 TraesCS2A01G591900 chr2B 777168862 777172114 3252 True 1465.00 2499 92.689333 482 3912 3 chr2B.!!$R2 3430
2 TraesCS2A01G591900 chr2D 634255439 634258974 3535 True 1220.25 2362 93.594000 10 3846 4 chr2D.!!$R1 3836
3 TraesCS2A01G591900 chr5A 584965579 584967852 2273 False 682.50 1230 91.004500 998 3650 4 chr5A.!!$F3 2652
4 TraesCS2A01G591900 chr5A 675516309 675516949 640 True 436.50 662 92.008500 4070 4648 2 chr5A.!!$R3 578
5 TraesCS2A01G591900 chr5D 464491357 464493659 2302 False 682.00 1205 91.261000 998 3650 4 chr5D.!!$F2 2652
6 TraesCS2A01G591900 chr5B 527331427 527332027 600 True 568.00 568 84.829000 4070 4641 1 chr5B.!!$R1 571
7 TraesCS2A01G591900 chr5B 571834646 571836945 2299 True 550.40 730 91.835000 1038 3648 5 chr5B.!!$R2 2610

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
428 429 0.106335 TGCAAGGTTGGCAAACATGG 59.894 50.0 20.64 9.22 38.54 3.66 F
433 434 0.106521 GGTTGGCAAACATGGCAGTT 59.893 50.0 11.10 0.00 45.06 3.16 F
851 857 0.175073 GTACCGGCTCGTTCATCCTT 59.825 55.0 0.00 0.00 0.00 3.36 F
948 954 0.321210 AACCGCATGATGTCAACCGA 60.321 50.0 0.00 0.00 0.00 4.69 F
2189 2276 0.457337 GCACTTCAGGGTACGTACGG 60.457 60.0 21.06 11.28 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1367 1398 0.165295 GCATGCACATCCATCGATCG 59.835 55.0 14.21 9.36 0.00 3.69 R
2235 2417 0.731514 ACCGTACGTGTCAAGCGATG 60.732 55.0 15.21 0.00 0.00 3.84 R
2820 3039 0.035725 TACAAGAGGAGCGGTCTCGA 60.036 55.0 15.18 0.00 40.26 4.04 R
2824 3043 0.173708 CAGGTACAAGAGGAGCGGTC 59.826 60.0 5.93 5.93 0.00 4.79 R
3992 4254 0.038526 CTCGTGTACTCGGCAAAGGT 60.039 55.0 16.50 0.00 0.00 3.50 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 2.080654 TGGTGGGACCCAAAAGAAAG 57.919 50.000 16.98 0.00 37.50 2.62
59 60 7.814587 GGACCCAAAAGAAAGAAATATCAACAG 59.185 37.037 0.00 0.00 0.00 3.16
61 62 9.362151 ACCCAAAAGAAAGAAATATCAACAGTA 57.638 29.630 0.00 0.00 0.00 2.74
67 68 9.914131 AAGAAAGAAATATCAACAGTAAAAGCC 57.086 29.630 0.00 0.00 0.00 4.35
86 87 2.758423 GCCAGGAACGGAACCAATATTT 59.242 45.455 0.00 0.00 0.00 1.40
98 99 6.912591 CGGAACCAATATTTAATTCAGTGCTC 59.087 38.462 5.78 0.00 0.00 4.26
109 110 0.395724 TCAGTGCTCGGGCTCATCTA 60.396 55.000 9.62 0.00 39.59 1.98
112 113 0.390860 GTGCTCGGGCTCATCTACAT 59.609 55.000 9.62 0.00 39.59 2.29
113 114 1.123077 TGCTCGGGCTCATCTACATT 58.877 50.000 9.62 0.00 39.59 2.71
114 115 1.069204 TGCTCGGGCTCATCTACATTC 59.931 52.381 9.62 0.00 39.59 2.67
121 122 3.743396 GGGCTCATCTACATTCGATGAAC 59.257 47.826 4.52 0.62 44.62 3.18
123 124 4.447054 GGCTCATCTACATTCGATGAACAG 59.553 45.833 4.52 0.00 44.62 3.16
160 161 8.782339 ATAGCAGAAAATTTCCAAAAATCTGG 57.218 30.769 13.11 0.00 33.93 3.86
198 199 2.098842 GATGATTCAGTGCGCGAGGC 62.099 60.000 12.10 0.00 43.96 4.70
244 245 1.159285 CATTTGAGGAGCTCGCAACA 58.841 50.000 17.15 8.05 34.96 3.33
275 276 8.237811 AGACAAAATGAACTCCAAATAGTGTT 57.762 30.769 0.00 0.00 0.00 3.32
300 301 6.531240 TGTTTTCAAAAGCTTCTCACATGTTC 59.469 34.615 0.00 0.00 0.00 3.18
301 302 5.833406 TTCAAAAGCTTCTCACATGTTCA 57.167 34.783 0.00 0.00 0.00 3.18
329 330 8.451908 AATTATTATTTTTGCCGAGAGCTACT 57.548 30.769 0.00 0.00 44.23 2.57
340 341 3.368427 CCGAGAGCTACTGAAATGTCCAA 60.368 47.826 0.00 0.00 0.00 3.53
344 345 3.679389 AGCTACTGAAATGTCCAACCTG 58.321 45.455 0.00 0.00 0.00 4.00
345 346 3.073062 AGCTACTGAAATGTCCAACCTGT 59.927 43.478 0.00 0.00 0.00 4.00
348 349 4.431416 ACTGAAATGTCCAACCTGTACA 57.569 40.909 0.00 0.00 0.00 2.90
362 363 2.422597 CTGTACAGAATTTGGCACGGA 58.577 47.619 18.45 0.00 0.00 4.69
365 366 3.823873 TGTACAGAATTTGGCACGGATTT 59.176 39.130 0.00 0.00 0.00 2.17
366 367 4.279671 TGTACAGAATTTGGCACGGATTTT 59.720 37.500 0.00 0.00 0.00 1.82
367 368 5.473846 TGTACAGAATTTGGCACGGATTTTA 59.526 36.000 0.00 0.00 0.00 1.52
368 369 5.461032 ACAGAATTTGGCACGGATTTTAA 57.539 34.783 0.00 0.00 0.00 1.52
369 370 5.848406 ACAGAATTTGGCACGGATTTTAAA 58.152 33.333 0.00 0.00 0.00 1.52
370 371 5.694458 ACAGAATTTGGCACGGATTTTAAAC 59.306 36.000 0.00 0.00 0.00 2.01
371 372 5.694006 CAGAATTTGGCACGGATTTTAAACA 59.306 36.000 0.00 0.00 0.00 2.83
372 373 6.368516 CAGAATTTGGCACGGATTTTAAACAT 59.631 34.615 0.00 0.00 0.00 2.71
373 374 6.368516 AGAATTTGGCACGGATTTTAAACATG 59.631 34.615 0.00 0.00 0.00 3.21
375 376 2.894126 TGGCACGGATTTTAAACATGGT 59.106 40.909 0.00 0.00 0.00 3.55
376 377 4.079970 TGGCACGGATTTTAAACATGGTA 58.920 39.130 0.00 0.00 0.00 3.25
377 378 4.523173 TGGCACGGATTTTAAACATGGTAA 59.477 37.500 0.00 0.00 0.00 2.85
378 379 5.186021 TGGCACGGATTTTAAACATGGTAAT 59.814 36.000 0.00 0.00 0.00 1.89
380 381 6.326375 GCACGGATTTTAAACATGGTAATCA 58.674 36.000 6.98 0.00 0.00 2.57
381 382 6.472163 GCACGGATTTTAAACATGGTAATCAG 59.528 38.462 6.98 5.49 0.00 2.90
382 383 7.627513 GCACGGATTTTAAACATGGTAATCAGA 60.628 37.037 10.61 0.00 0.00 3.27
383 384 8.240682 CACGGATTTTAAACATGGTAATCAGAA 58.759 33.333 10.61 0.00 0.00 3.02
384 385 8.241367 ACGGATTTTAAACATGGTAATCAGAAC 58.759 33.333 10.61 0.00 0.00 3.01
385 386 7.428183 CGGATTTTAAACATGGTAATCAGAACG 59.572 37.037 6.98 0.00 0.00 3.95
387 388 9.620660 GATTTTAAACATGGTAATCAGAACGTT 57.379 29.630 0.00 0.00 0.00 3.99
388 389 9.974980 ATTTTAAACATGGTAATCAGAACGTTT 57.025 25.926 0.46 0.00 0.00 3.60
390 391 9.804758 TTTAAACATGGTAATCAGAACGTTTTT 57.195 25.926 0.46 0.00 0.00 1.94
391 392 7.924103 AAACATGGTAATCAGAACGTTTTTC 57.076 32.000 0.46 0.00 0.00 2.29
392 393 6.627395 ACATGGTAATCAGAACGTTTTTCA 57.373 33.333 0.46 0.00 0.00 2.69
394 395 7.083858 ACATGGTAATCAGAACGTTTTTCATG 58.916 34.615 0.46 11.98 34.91 3.07
395 396 6.869315 TGGTAATCAGAACGTTTTTCATGA 57.131 33.333 0.46 3.05 0.00 3.07
396 397 6.664515 TGGTAATCAGAACGTTTTTCATGAC 58.335 36.000 0.46 0.00 0.00 3.06
397 398 6.261158 TGGTAATCAGAACGTTTTTCATGACA 59.739 34.615 0.46 0.00 0.00 3.58
398 399 7.136119 GGTAATCAGAACGTTTTTCATGACAA 58.864 34.615 0.46 0.00 0.00 3.18
399 400 7.112984 GGTAATCAGAACGTTTTTCATGACAAC 59.887 37.037 0.46 0.56 0.00 3.32
402 403 6.616947 TCAGAACGTTTTTCATGACAACTTT 58.383 32.000 0.46 10.41 0.00 2.66
403 404 7.753659 TCAGAACGTTTTTCATGACAACTTTA 58.246 30.769 0.46 0.00 0.00 1.85
404 405 7.694784 TCAGAACGTTTTTCATGACAACTTTAC 59.305 33.333 0.46 1.16 0.00 2.01
405 406 7.696453 CAGAACGTTTTTCATGACAACTTTACT 59.304 33.333 0.46 7.99 0.00 2.24
406 407 8.241367 AGAACGTTTTTCATGACAACTTTACTT 58.759 29.630 0.46 0.00 0.00 2.24
408 409 7.531716 ACGTTTTTCATGACAACTTTACTTCA 58.468 30.769 12.88 0.00 0.00 3.02
409 410 8.188139 ACGTTTTTCATGACAACTTTACTTCAT 58.812 29.630 12.88 0.00 0.00 2.57
410 411 8.471457 CGTTTTTCATGACAACTTTACTTCATG 58.529 33.333 12.88 4.39 44.49 3.07
411 412 7.928908 TTTTCATGACAACTTTACTTCATGC 57.071 32.000 0.00 0.00 43.36 4.06
412 413 6.631971 TTCATGACAACTTTACTTCATGCA 57.368 33.333 0.00 0.00 43.36 3.96
413 414 6.631971 TCATGACAACTTTACTTCATGCAA 57.368 33.333 5.69 0.00 43.36 4.08
414 415 6.671190 TCATGACAACTTTACTTCATGCAAG 58.329 36.000 5.69 0.00 43.36 4.01
415 416 5.437289 TGACAACTTTACTTCATGCAAGG 57.563 39.130 0.00 0.00 36.26 3.61
416 417 4.887071 TGACAACTTTACTTCATGCAAGGT 59.113 37.500 0.00 0.00 36.26 3.50
417 418 5.359576 TGACAACTTTACTTCATGCAAGGTT 59.640 36.000 0.00 2.05 36.26 3.50
418 419 5.591099 ACAACTTTACTTCATGCAAGGTTG 58.409 37.500 15.71 15.71 36.95 3.77
419 420 4.853924 ACTTTACTTCATGCAAGGTTGG 57.146 40.909 0.00 0.00 36.26 3.77
420 421 3.005791 ACTTTACTTCATGCAAGGTTGGC 59.994 43.478 0.00 0.00 36.26 4.52
421 422 2.284754 TACTTCATGCAAGGTTGGCA 57.715 45.000 0.00 0.00 46.66 4.92
422 423 1.412079 ACTTCATGCAAGGTTGGCAA 58.588 45.000 0.00 0.00 45.60 4.52
423 424 1.761784 ACTTCATGCAAGGTTGGCAAA 59.238 42.857 0.00 0.00 45.60 3.68
424 425 2.137523 CTTCATGCAAGGTTGGCAAAC 58.862 47.619 7.31 7.31 45.60 2.93
425 426 1.117994 TCATGCAAGGTTGGCAAACA 58.882 45.000 18.93 4.43 45.60 2.83
426 427 1.693062 TCATGCAAGGTTGGCAAACAT 59.307 42.857 18.93 1.62 45.60 2.71
427 428 1.801771 CATGCAAGGTTGGCAAACATG 59.198 47.619 18.93 17.22 45.60 3.21
428 429 0.106335 TGCAAGGTTGGCAAACATGG 59.894 50.000 20.64 9.22 38.54 3.66
429 430 1.229975 GCAAGGTTGGCAAACATGGC 61.230 55.000 20.64 14.89 39.62 4.40
430 431 0.106335 CAAGGTTGGCAAACATGGCA 59.894 50.000 18.93 0.51 42.75 4.92
431 432 0.393820 AAGGTTGGCAAACATGGCAG 59.606 50.000 18.93 0.00 45.06 4.85
432 433 0.760189 AGGTTGGCAAACATGGCAGT 60.760 50.000 18.93 0.00 45.06 4.40
433 434 0.106521 GGTTGGCAAACATGGCAGTT 59.893 50.000 11.10 0.00 45.06 3.16
434 435 1.474855 GGTTGGCAAACATGGCAGTTT 60.475 47.619 11.10 8.59 45.06 2.66
435 436 2.287769 GTTGGCAAACATGGCAGTTTT 58.712 42.857 0.00 2.09 45.06 2.43
436 437 2.237393 TGGCAAACATGGCAGTTTTC 57.763 45.000 10.88 7.61 39.55 2.29
437 438 1.761784 TGGCAAACATGGCAGTTTTCT 59.238 42.857 10.88 0.00 39.55 2.52
438 439 2.961741 TGGCAAACATGGCAGTTTTCTA 59.038 40.909 10.88 4.13 39.55 2.10
439 440 3.386078 TGGCAAACATGGCAGTTTTCTAA 59.614 39.130 10.88 0.86 39.55 2.10
440 441 3.740832 GGCAAACATGGCAGTTTTCTAAC 59.259 43.478 10.88 0.00 39.55 2.34
441 442 4.367450 GCAAACATGGCAGTTTTCTAACA 58.633 39.130 10.88 0.00 39.55 2.41
442 443 4.808364 GCAAACATGGCAGTTTTCTAACAA 59.192 37.500 10.88 0.00 39.55 2.83
443 444 5.293079 GCAAACATGGCAGTTTTCTAACAAA 59.707 36.000 10.88 0.00 39.55 2.83
444 445 6.183360 GCAAACATGGCAGTTTTCTAACAAAA 60.183 34.615 10.88 0.00 39.55 2.44
445 446 7.625185 GCAAACATGGCAGTTTTCTAACAAAAA 60.625 33.333 10.88 0.00 39.55 1.94
462 463 2.447408 AAAAGGAACCGGGACAAAGT 57.553 45.000 6.32 0.00 0.00 2.66
463 464 2.447408 AAAGGAACCGGGACAAAGTT 57.553 45.000 6.32 0.00 0.00 2.66
464 465 1.687563 AAGGAACCGGGACAAAGTTG 58.312 50.000 6.32 0.00 0.00 3.16
465 466 0.549469 AGGAACCGGGACAAAGTTGT 59.451 50.000 6.32 0.00 45.65 3.32
553 559 4.379243 AGTTGCACCCGAGAGCCG 62.379 66.667 0.00 0.00 38.18 5.52
561 567 3.264897 CCGAGAGCCGAAATGCCG 61.265 66.667 0.00 0.00 41.76 5.69
611 617 0.892358 CTTCACCATGTGGCAGCACT 60.892 55.000 0.00 0.00 39.32 4.40
613 619 1.601477 CACCATGTGGCAGCACTGA 60.601 57.895 0.81 0.00 39.32 3.41
614 620 1.303074 ACCATGTGGCAGCACTGAG 60.303 57.895 0.81 0.00 39.32 3.35
615 621 2.697761 CCATGTGGCAGCACTGAGC 61.698 63.158 0.81 0.00 46.19 4.26
668 674 2.609244 GCCGCTAAAAATGTCTTTGCCA 60.609 45.455 0.00 0.00 0.00 4.92
796 802 1.131504 TGTTGAAGTGTTCACCGTTGC 59.868 47.619 0.00 0.00 39.87 4.17
842 848 1.360551 CAGGATCTGTACCGGCTCG 59.639 63.158 0.00 0.00 0.00 5.03
851 857 0.175073 GTACCGGCTCGTTCATCCTT 59.825 55.000 0.00 0.00 0.00 3.36
864 870 1.906574 TCATCCTTTCGGTAGTGCCTT 59.093 47.619 0.00 0.00 34.25 4.35
872 878 2.295885 TCGGTAGTGCCTTAGCTAGAC 58.704 52.381 0.00 0.00 40.80 2.59
892 898 5.632118 AGACTGTAGGAGTTCAGTTGAGTA 58.368 41.667 0.00 0.00 43.64 2.59
908 914 2.365635 TACTGGGGCTGCCTCTCC 60.366 66.667 21.13 12.77 0.00 3.71
946 952 3.840890 TTAAACCGCATGATGTCAACC 57.159 42.857 0.00 0.00 0.00 3.77
948 954 0.321210 AACCGCATGATGTCAACCGA 60.321 50.000 0.00 0.00 0.00 4.69
977 983 2.889512 ACACTCTCATCACACCCACTA 58.110 47.619 0.00 0.00 0.00 2.74
1344 1375 0.664466 CGTGTGCGTGTCATCTCTGT 60.664 55.000 0.00 0.00 0.00 3.41
1359 1390 3.609853 TCTCTGTATTGCATGTGGGTTC 58.390 45.455 0.00 0.00 0.00 3.62
1360 1391 3.008923 TCTCTGTATTGCATGTGGGTTCA 59.991 43.478 0.00 0.00 0.00 3.18
1363 1394 4.771577 TCTGTATTGCATGTGGGTTCAATT 59.228 37.500 0.00 0.00 32.20 2.32
1367 1398 3.872511 TGCATGTGGGTTCAATTGATC 57.127 42.857 9.40 8.51 0.00 2.92
1552 1583 1.000717 GGCAACAACAACGCCTACAAT 60.001 47.619 0.00 0.00 42.78 2.71
1606 1637 4.265507 ACCAGGGACCCCGACCTT 62.266 66.667 7.00 0.00 41.95 3.50
1694 1725 4.218478 GCGTCGCGGTGCATAACC 62.218 66.667 16.72 0.00 46.60 2.85
1718 1770 9.458727 ACCTCTTATAATATCAATCAATGGCTG 57.541 33.333 0.00 0.00 0.00 4.85
1729 1781 8.762481 ATCAATCAATGGCTGCATATACATAT 57.238 30.769 0.50 0.00 0.00 1.78
1731 1783 7.612633 TCAATCAATGGCTGCATATACATATGT 59.387 33.333 13.93 13.93 41.63 2.29
1735 1800 5.226194 TGGCTGCATATACATATGTGTCA 57.774 39.130 18.81 4.49 41.63 3.58
1737 1802 5.469760 TGGCTGCATATACATATGTGTCAAC 59.530 40.000 18.81 5.92 41.63 3.18
1741 1806 5.401079 TGCATATACATATGTGTCAACGTCG 59.599 40.000 18.81 0.00 41.63 5.12
1746 1811 0.730155 TATGTGTCAACGTCGTCGGC 60.730 55.000 7.05 0.00 41.85 5.54
2104 2188 3.481453 CTCCGTCATGATCTCCTACTCA 58.519 50.000 0.00 0.00 0.00 3.41
2189 2276 0.457337 GCACTTCAGGGTACGTACGG 60.457 60.000 21.06 11.28 0.00 4.02
2201 2288 1.493750 CGTACGGCGTCAATTTGCA 59.506 52.632 19.21 0.00 35.54 4.08
2208 2295 2.531103 CGGCGTCAATTTGCATACATTG 59.469 45.455 0.00 7.24 0.00 2.82
2209 2296 3.510719 GGCGTCAATTTGCATACATTGT 58.489 40.909 11.51 0.00 32.96 2.71
2230 2412 6.793492 TGTCATTGTCATTGTCATTTCGTA 57.207 33.333 0.00 0.00 0.00 3.43
2232 2414 5.728049 GTCATTGTCATTGTCATTTCGTACG 59.272 40.000 9.53 9.53 0.00 3.67
2235 2417 3.676172 TGTCATTGTCATTTCGTACGTCC 59.324 43.478 16.05 0.00 0.00 4.79
2236 2418 3.676172 GTCATTGTCATTTCGTACGTCCA 59.324 43.478 16.05 0.48 0.00 4.02
2239 2421 2.521996 TGTCATTTCGTACGTCCATCG 58.478 47.619 16.05 0.74 46.00 3.84
2253 2444 1.410737 CCATCGCTTGACACGTACGG 61.411 60.000 21.06 11.05 0.00 4.02
2254 2445 0.731514 CATCGCTTGACACGTACGGT 60.732 55.000 21.06 14.36 0.00 4.83
2487 2698 1.003580 GCATCCTCAGGGTCAAGTTCA 59.996 52.381 0.00 0.00 0.00 3.18
2672 2883 0.539051 AGGCCAAGAAGATCCTCGTG 59.461 55.000 5.01 0.68 0.00 4.35
2783 3002 1.383523 GTACGTACCTACCTCGCCTT 58.616 55.000 15.00 0.00 0.00 4.35
2784 3003 1.064654 GTACGTACCTACCTCGCCTTG 59.935 57.143 15.00 0.00 0.00 3.61
2785 3004 1.226888 CGTACCTACCTCGCCTTGC 60.227 63.158 0.00 0.00 0.00 4.01
2820 3039 5.892686 TCACACATCTCTCTCTCTCATCAAT 59.107 40.000 0.00 0.00 0.00 2.57
2824 3043 5.471116 ACATCTCTCTCTCTCATCAATCGAG 59.529 44.000 0.00 0.00 0.00 4.04
2825 3044 5.289083 TCTCTCTCTCTCATCAATCGAGA 57.711 43.478 0.00 0.00 37.18 4.04
2826 3045 5.056480 TCTCTCTCTCTCATCAATCGAGAC 58.944 45.833 0.00 0.00 34.59 3.36
2831 3050 1.335182 TCTCATCAATCGAGACCGCTC 59.665 52.381 0.00 0.00 34.59 5.03
2832 3051 0.385751 TCATCAATCGAGACCGCTCC 59.614 55.000 0.00 0.00 37.91 4.70
2841 3065 0.456628 GAGACCGCTCCTCTTGTACC 59.543 60.000 0.00 0.00 35.01 3.34
2850 3074 3.307059 GCTCCTCTTGTACCTGTTGATGT 60.307 47.826 0.00 0.00 0.00 3.06
2857 3081 9.396022 CCTCTTGTACCTGTTGATGTTTATATT 57.604 33.333 0.00 0.00 0.00 1.28
2880 3104 7.749377 TTATACTTCCTCCATCCTTGAAAGA 57.251 36.000 0.00 0.00 0.00 2.52
2882 3106 3.913163 ACTTCCTCCATCCTTGAAAGAGT 59.087 43.478 0.00 0.00 0.00 3.24
2883 3107 3.988976 TCCTCCATCCTTGAAAGAGTG 57.011 47.619 0.00 0.00 0.00 3.51
2884 3108 3.251484 TCCTCCATCCTTGAAAGAGTGT 58.749 45.455 0.00 0.00 0.00 3.55
2885 3109 4.425772 TCCTCCATCCTTGAAAGAGTGTA 58.574 43.478 0.00 0.00 0.00 2.90
2886 3110 5.032846 TCCTCCATCCTTGAAAGAGTGTAT 58.967 41.667 0.00 0.00 0.00 2.29
2887 3111 5.488919 TCCTCCATCCTTGAAAGAGTGTATT 59.511 40.000 0.00 0.00 0.00 1.89
2888 3112 6.012508 TCCTCCATCCTTGAAAGAGTGTATTT 60.013 38.462 0.00 0.00 0.00 1.40
2889 3113 6.660949 CCTCCATCCTTGAAAGAGTGTATTTT 59.339 38.462 0.00 0.00 0.00 1.82
2890 3114 7.177392 CCTCCATCCTTGAAAGAGTGTATTTTT 59.823 37.037 0.00 0.00 0.00 1.94
2891 3115 9.231297 CTCCATCCTTGAAAGAGTGTATTTTTA 57.769 33.333 0.00 0.00 0.00 1.52
2892 3116 9.581289 TCCATCCTTGAAAGAGTGTATTTTTAA 57.419 29.630 0.00 0.00 0.00 1.52
2893 3117 9.626045 CCATCCTTGAAAGAGTGTATTTTTAAC 57.374 33.333 0.00 0.00 0.00 2.01
2928 3152 9.933723 AGAGTTAAACTATTTAAAAGCTACCGA 57.066 29.630 0.00 0.00 36.91 4.69
2930 3154 9.716531 AGTTAAACTATTTAAAAGCTACCGAGT 57.283 29.630 0.00 0.00 36.91 4.18
2934 3158 7.974482 ACTATTTAAAAGCTACCGAGTTTGT 57.026 32.000 0.00 0.00 0.00 2.83
2935 3159 7.803724 ACTATTTAAAAGCTACCGAGTTTGTG 58.196 34.615 0.00 0.00 0.00 3.33
2936 3160 4.477302 TTAAAAGCTACCGAGTTTGTGC 57.523 40.909 0.00 0.00 0.00 4.57
2937 3161 1.961793 AAAGCTACCGAGTTTGTGCA 58.038 45.000 0.00 0.00 0.00 4.57
2938 3162 1.961793 AAGCTACCGAGTTTGTGCAA 58.038 45.000 0.00 0.00 0.00 4.08
2939 3163 1.961793 AGCTACCGAGTTTGTGCAAA 58.038 45.000 0.00 0.00 0.00 3.68
2940 3164 2.294074 AGCTACCGAGTTTGTGCAAAA 58.706 42.857 0.00 0.00 31.33 2.44
2941 3165 2.685897 AGCTACCGAGTTTGTGCAAAAA 59.314 40.909 0.00 0.00 31.33 1.94
2942 3166 3.317993 AGCTACCGAGTTTGTGCAAAAAT 59.682 39.130 5.11 0.00 31.33 1.82
2943 3167 4.517453 AGCTACCGAGTTTGTGCAAAAATA 59.483 37.500 5.11 0.00 31.33 1.40
2944 3168 5.183140 AGCTACCGAGTTTGTGCAAAAATAT 59.817 36.000 5.11 0.00 31.33 1.28
2945 3169 6.373216 AGCTACCGAGTTTGTGCAAAAATATA 59.627 34.615 5.11 0.00 31.33 0.86
2946 3170 7.067008 AGCTACCGAGTTTGTGCAAAAATATAT 59.933 33.333 5.11 0.00 31.33 0.86
2947 3171 7.376072 GCTACCGAGTTTGTGCAAAAATATATC 59.624 37.037 5.11 1.66 31.33 1.63
2948 3172 7.151999 ACCGAGTTTGTGCAAAAATATATCA 57.848 32.000 5.11 0.00 31.33 2.15
2949 3173 7.598278 ACCGAGTTTGTGCAAAAATATATCAA 58.402 30.769 5.11 0.00 31.33 2.57
2950 3174 8.250332 ACCGAGTTTGTGCAAAAATATATCAAT 58.750 29.630 5.11 0.00 31.33 2.57
2951 3175 9.729023 CCGAGTTTGTGCAAAAATATATCAATA 57.271 29.630 5.11 0.00 31.33 1.90
3021 3245 8.352201 TGTATTGAATGCTACTAATTTGATGGC 58.648 33.333 0.00 0.00 0.00 4.40
3022 3246 6.772360 TTGAATGCTACTAATTTGATGGCA 57.228 33.333 0.00 0.00 0.00 4.92
3023 3247 6.964807 TGAATGCTACTAATTTGATGGCAT 57.035 33.333 0.00 0.00 40.04 4.40
3024 3248 8.462589 TTGAATGCTACTAATTTGATGGCATA 57.537 30.769 0.00 0.00 37.85 3.14
3025 3249 8.462589 TGAATGCTACTAATTTGATGGCATAA 57.537 30.769 0.00 0.00 37.85 1.90
3026 3250 8.911965 TGAATGCTACTAATTTGATGGCATAAA 58.088 29.630 0.00 0.00 37.85 1.40
3027 3251 9.918630 GAATGCTACTAATTTGATGGCATAAAT 57.081 29.630 0.00 4.69 37.85 1.40
3124 3348 4.451629 TGAAGAACGGAGGAAGTATGTC 57.548 45.455 0.00 0.00 0.00 3.06
3127 3351 2.166664 AGAACGGAGGAAGTATGTCAGC 59.833 50.000 0.00 0.00 0.00 4.26
3213 3443 2.708051 AGAAGACGGTCATCGACTACA 58.292 47.619 11.27 0.00 42.45 2.74
3338 3568 1.993391 GAACCTCACCATCCCGGGA 60.993 63.158 29.18 29.18 40.22 5.14
3341 3571 3.480133 CTCACCATCCCGGGACCC 61.480 72.222 29.69 0.00 40.22 4.46
3521 3751 0.034380 TCGGAGACCACGGATTCTCT 60.034 55.000 8.71 0.00 38.68 3.10
3671 3904 2.366301 TTAGCCCGCCCCTCATCA 60.366 61.111 0.00 0.00 0.00 3.07
3696 3929 7.695618 CAGATCGAGTTTGGATTTCATCTTTTC 59.304 37.037 0.00 0.00 0.00 2.29
3746 4001 3.669939 AGTTAATTAGCCCCTGCATGT 57.330 42.857 0.00 0.00 41.13 3.21
3846 4103 2.163818 TGTCAACGTCCCATGAACTC 57.836 50.000 0.00 0.00 0.00 3.01
3847 4104 1.691976 TGTCAACGTCCCATGAACTCT 59.308 47.619 0.00 0.00 0.00 3.24
3848 4105 2.894765 TGTCAACGTCCCATGAACTCTA 59.105 45.455 0.00 0.00 0.00 2.43
3861 4119 7.068839 TCCCATGAACTCTAAATCTCTAGTGAC 59.931 40.741 0.00 0.00 0.00 3.67
3871 4129 1.961394 TCTCTAGTGACGCCACAGTTT 59.039 47.619 4.23 0.00 45.54 2.66
3876 4134 0.028902 GTGACGCCACAGTTTTGTCC 59.971 55.000 0.00 0.00 42.72 4.02
3881 4139 0.603065 GCCACAGTTTTGTCCATCCC 59.397 55.000 0.00 0.00 34.62 3.85
3886 4144 3.255642 CACAGTTTTGTCCATCCCGAATT 59.744 43.478 0.00 0.00 34.62 2.17
3887 4145 3.506067 ACAGTTTTGTCCATCCCGAATTC 59.494 43.478 0.00 0.00 29.46 2.17
3899 4161 2.094182 TCCCGAATTCTCAACTTCTCGG 60.094 50.000 3.52 1.38 44.21 4.63
3904 4166 4.570930 GAATTCTCAACTTCTCGGGTTCT 58.429 43.478 0.00 0.00 0.00 3.01
3912 4174 4.086706 ACTTCTCGGGTTCTTCACAATT 57.913 40.909 0.00 0.00 0.00 2.32
3913 4175 5.223449 ACTTCTCGGGTTCTTCACAATTA 57.777 39.130 0.00 0.00 0.00 1.40
3914 4176 4.995487 ACTTCTCGGGTTCTTCACAATTAC 59.005 41.667 0.00 0.00 0.00 1.89
3915 4177 4.884668 TCTCGGGTTCTTCACAATTACT 57.115 40.909 0.00 0.00 0.00 2.24
3916 4178 4.817517 TCTCGGGTTCTTCACAATTACTC 58.182 43.478 0.00 0.00 0.00 2.59
3917 4179 3.933332 CTCGGGTTCTTCACAATTACTCC 59.067 47.826 0.00 0.00 0.00 3.85
3918 4180 3.007635 CGGGTTCTTCACAATTACTCCC 58.992 50.000 0.00 0.00 0.00 4.30
3919 4181 3.307480 CGGGTTCTTCACAATTACTCCCT 60.307 47.826 0.00 0.00 0.00 4.20
3920 4182 4.262617 GGGTTCTTCACAATTACTCCCTC 58.737 47.826 0.00 0.00 0.00 4.30
3921 4183 4.262617 GGTTCTTCACAATTACTCCCTCC 58.737 47.826 0.00 0.00 0.00 4.30
3922 4184 3.887621 TCTTCACAATTACTCCCTCCG 57.112 47.619 0.00 0.00 0.00 4.63
3923 4185 3.170717 TCTTCACAATTACTCCCTCCGT 58.829 45.455 0.00 0.00 0.00 4.69
3924 4186 3.581332 TCTTCACAATTACTCCCTCCGTT 59.419 43.478 0.00 0.00 0.00 4.44
3925 4187 3.604875 TCACAATTACTCCCTCCGTTC 57.395 47.619 0.00 0.00 0.00 3.95
3926 4188 3.170717 TCACAATTACTCCCTCCGTTCT 58.829 45.455 0.00 0.00 0.00 3.01
3927 4189 4.346730 TCACAATTACTCCCTCCGTTCTA 58.653 43.478 0.00 0.00 0.00 2.10
3928 4190 4.773674 TCACAATTACTCCCTCCGTTCTAA 59.226 41.667 0.00 0.00 0.00 2.10
3929 4191 5.246656 TCACAATTACTCCCTCCGTTCTAAA 59.753 40.000 0.00 0.00 0.00 1.85
3930 4192 5.935789 CACAATTACTCCCTCCGTTCTAAAA 59.064 40.000 0.00 0.00 0.00 1.52
3931 4193 5.936372 ACAATTACTCCCTCCGTTCTAAAAC 59.064 40.000 0.00 0.00 0.00 2.43
3932 4194 5.750352 ATTACTCCCTCCGTTCTAAAACA 57.250 39.130 0.00 0.00 34.93 2.83
3933 4195 3.679824 ACTCCCTCCGTTCTAAAACAG 57.320 47.619 0.00 0.00 34.93 3.16
3934 4196 3.236896 ACTCCCTCCGTTCTAAAACAGA 58.763 45.455 0.00 0.00 34.93 3.41
3935 4197 3.838903 ACTCCCTCCGTTCTAAAACAGAT 59.161 43.478 0.00 0.00 34.93 2.90
3936 4198 4.184629 CTCCCTCCGTTCTAAAACAGATG 58.815 47.826 0.00 0.00 34.93 2.90
3937 4199 3.835978 TCCCTCCGTTCTAAAACAGATGA 59.164 43.478 0.00 0.00 34.93 2.92
3938 4200 3.933332 CCCTCCGTTCTAAAACAGATGAC 59.067 47.826 0.00 0.00 34.93 3.06
3939 4201 4.562757 CCCTCCGTTCTAAAACAGATGACA 60.563 45.833 0.00 0.00 34.93 3.58
3940 4202 4.389077 CCTCCGTTCTAAAACAGATGACAC 59.611 45.833 0.00 0.00 34.93 3.67
3941 4203 4.951254 TCCGTTCTAAAACAGATGACACA 58.049 39.130 0.00 0.00 34.93 3.72
3942 4204 5.361427 TCCGTTCTAAAACAGATGACACAA 58.639 37.500 0.00 0.00 34.93 3.33
3943 4205 5.995282 TCCGTTCTAAAACAGATGACACAAT 59.005 36.000 0.00 0.00 34.93 2.71
3944 4206 6.485313 TCCGTTCTAAAACAGATGACACAATT 59.515 34.615 0.00 0.00 34.93 2.32
3945 4207 7.012894 TCCGTTCTAAAACAGATGACACAATTT 59.987 33.333 0.00 0.00 34.93 1.82
3946 4208 7.647715 CCGTTCTAAAACAGATGACACAATTTT 59.352 33.333 0.00 0.00 34.93 1.82
3947 4209 9.658475 CGTTCTAAAACAGATGACACAATTTTA 57.342 29.630 0.00 0.00 34.93 1.52
3955 4217 9.959721 AACAGATGACACAATTTTATACTACCT 57.040 29.630 0.00 0.00 0.00 3.08
3956 4218 9.601217 ACAGATGACACAATTTTATACTACCTC 57.399 33.333 0.00 0.00 0.00 3.85
3957 4219 9.823647 CAGATGACACAATTTTATACTACCTCT 57.176 33.333 0.00 0.00 0.00 3.69
3959 4221 8.873215 ATGACACAATTTTATACTACCTCTCG 57.127 34.615 0.00 0.00 0.00 4.04
3960 4222 7.833786 TGACACAATTTTATACTACCTCTCGT 58.166 34.615 0.00 0.00 0.00 4.18
3961 4223 7.972277 TGACACAATTTTATACTACCTCTCGTC 59.028 37.037 0.00 0.00 0.00 4.20
3962 4224 7.833786 ACACAATTTTATACTACCTCTCGTCA 58.166 34.615 0.00 0.00 0.00 4.35
3963 4225 7.974501 ACACAATTTTATACTACCTCTCGTCAG 59.025 37.037 0.00 0.00 0.00 3.51
3964 4226 6.979238 ACAATTTTATACTACCTCTCGTCAGC 59.021 38.462 0.00 0.00 0.00 4.26
3965 4227 6.710597 ATTTTATACTACCTCTCGTCAGCA 57.289 37.500 0.00 0.00 0.00 4.41
3966 4228 6.710597 TTTTATACTACCTCTCGTCAGCAT 57.289 37.500 0.00 0.00 0.00 3.79
3967 4229 5.690997 TTATACTACCTCTCGTCAGCATG 57.309 43.478 0.00 0.00 37.54 4.06
3968 4230 1.840737 ACTACCTCTCGTCAGCATGT 58.159 50.000 0.00 0.00 37.40 3.21
3969 4231 1.474478 ACTACCTCTCGTCAGCATGTG 59.526 52.381 0.00 0.00 37.40 3.21
3970 4232 1.745653 CTACCTCTCGTCAGCATGTGA 59.254 52.381 0.00 0.00 37.40 3.58
3976 4238 3.479370 GTCAGCATGTGACGGCTC 58.521 61.111 11.08 0.00 46.22 4.70
3977 4239 2.103042 GTCAGCATGTGACGGCTCC 61.103 63.158 11.08 0.00 46.22 4.70
3978 4240 3.190849 CAGCATGTGACGGCTCCG 61.191 66.667 6.79 6.79 46.03 4.63
3988 4250 2.203015 CGGCTCCGTAATGGTGGG 60.203 66.667 0.00 0.00 39.52 4.61
3989 4251 2.192175 GGCTCCGTAATGGTGGGG 59.808 66.667 0.00 0.00 39.52 4.96
3990 4252 2.516225 GCTCCGTAATGGTGGGGC 60.516 66.667 0.00 0.00 46.11 5.80
3991 4253 2.994699 CTCCGTAATGGTGGGGCA 59.005 61.111 0.00 0.00 39.52 5.36
3992 4254 1.301623 CTCCGTAATGGTGGGGCAA 59.698 57.895 0.00 0.00 39.52 4.52
3993 4255 1.001887 TCCGTAATGGTGGGGCAAC 60.002 57.895 0.00 0.00 39.52 4.17
4009 4271 0.511221 CAACCTTTGCCGAGTACACG 59.489 55.000 5.66 5.66 0.00 4.49
4010 4272 0.390124 AACCTTTGCCGAGTACACGA 59.610 50.000 14.54 0.00 35.09 4.35
4011 4273 0.038526 ACCTTTGCCGAGTACACGAG 60.039 55.000 14.54 5.64 35.09 4.18
4012 4274 0.242825 CCTTTGCCGAGTACACGAGA 59.757 55.000 14.54 0.00 35.09 4.04
4013 4275 1.336517 CCTTTGCCGAGTACACGAGAA 60.337 52.381 14.54 3.53 35.09 2.87
4014 4276 2.400399 CTTTGCCGAGTACACGAGAAA 58.600 47.619 14.54 10.64 35.09 2.52
4015 4277 1.774639 TTGCCGAGTACACGAGAAAC 58.225 50.000 14.54 0.00 35.09 2.78
4016 4278 0.956633 TGCCGAGTACACGAGAAACT 59.043 50.000 14.54 0.00 35.09 2.66
4017 4279 2.153645 TGCCGAGTACACGAGAAACTA 58.846 47.619 14.54 0.00 35.09 2.24
4018 4280 2.553602 TGCCGAGTACACGAGAAACTAA 59.446 45.455 14.54 0.00 35.09 2.24
4019 4281 3.169733 GCCGAGTACACGAGAAACTAAG 58.830 50.000 14.54 0.00 35.09 2.18
4020 4282 3.756069 CCGAGTACACGAGAAACTAAGG 58.244 50.000 14.54 0.00 35.09 2.69
4021 4283 3.169733 CGAGTACACGAGAAACTAAGGC 58.830 50.000 6.90 0.00 35.09 4.35
4022 4284 3.509740 GAGTACACGAGAAACTAAGGCC 58.490 50.000 0.00 0.00 0.00 5.19
4023 4285 3.163467 AGTACACGAGAAACTAAGGCCT 58.837 45.455 0.00 0.00 0.00 5.19
4024 4286 3.577415 AGTACACGAGAAACTAAGGCCTT 59.423 43.478 24.18 24.18 0.00 4.35
4025 4287 2.767505 ACACGAGAAACTAAGGCCTTG 58.232 47.619 28.77 19.17 0.00 3.61
4026 4288 2.104281 ACACGAGAAACTAAGGCCTTGT 59.896 45.455 28.77 19.82 0.00 3.16
4027 4289 3.139077 CACGAGAAACTAAGGCCTTGTT 58.861 45.455 28.77 23.97 0.00 2.83
4028 4290 3.564225 CACGAGAAACTAAGGCCTTGTTT 59.436 43.478 29.91 29.91 36.73 2.83
4029 4291 3.564225 ACGAGAAACTAAGGCCTTGTTTG 59.436 43.478 32.43 24.70 34.55 2.93
4030 4292 3.058224 CGAGAAACTAAGGCCTTGTTTGG 60.058 47.826 32.43 22.73 34.55 3.28
4044 4306 6.817765 CCTTGTTTGGCTCATAAGTTCTAA 57.182 37.500 0.00 0.00 0.00 2.10
4045 4307 6.846350 CCTTGTTTGGCTCATAAGTTCTAAG 58.154 40.000 0.00 0.00 0.00 2.18
4046 4308 6.655003 CCTTGTTTGGCTCATAAGTTCTAAGA 59.345 38.462 0.00 0.00 0.00 2.10
4047 4309 7.361286 CCTTGTTTGGCTCATAAGTTCTAAGAC 60.361 40.741 0.00 0.00 0.00 3.01
4048 4310 6.769512 TGTTTGGCTCATAAGTTCTAAGACT 58.230 36.000 0.00 0.00 0.00 3.24
4049 4311 7.224297 TGTTTGGCTCATAAGTTCTAAGACTT 58.776 34.615 0.00 0.00 42.27 3.01
4050 4312 7.719633 TGTTTGGCTCATAAGTTCTAAGACTTT 59.280 33.333 0.00 0.00 40.24 2.66
4051 4313 8.568794 GTTTGGCTCATAAGTTCTAAGACTTTT 58.431 33.333 0.00 0.00 40.24 2.27
4052 4314 8.691661 TTGGCTCATAAGTTCTAAGACTTTTT 57.308 30.769 0.00 0.00 40.24 1.94
4109 4372 0.106419 CCCCCAGGGCGCTTAAATAA 60.106 55.000 7.64 0.00 35.35 1.40
4204 4481 4.223659 CGGGAAATTTAAACTTGGTCGTG 58.776 43.478 0.00 0.00 0.00 4.35
4205 4482 4.261280 CGGGAAATTTAAACTTGGTCGTGT 60.261 41.667 0.00 0.00 0.00 4.49
4211 4488 0.463116 AAACTTGGTCGTGTCCGCTT 60.463 50.000 0.00 0.00 0.00 4.68
4414 4738 3.920196 GTCCGTGTGGTCGTGGGT 61.920 66.667 0.00 0.00 36.30 4.51
4498 4822 1.219124 CTCTGCCATGTACCACGCT 59.781 57.895 0.00 0.00 0.00 5.07
4550 4874 1.305219 CGCCCCGCTCATCAGAAAAA 61.305 55.000 0.00 0.00 0.00 1.94
4612 4936 1.078918 CAGGTCGAGCTTGATGGCA 60.079 57.895 15.83 0.00 34.17 4.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 9.311676 CCACCATAGATAGATATGAGCATCTAT 57.688 37.037 5.52 5.52 46.32 1.98
8 9 7.727634 CCCACCATAGATAGATATGAGCATCTA 59.272 40.741 0.00 0.00 40.80 1.98
23 24 3.197983 TCTTTTGGGTCCCACCATAGAT 58.802 45.455 11.24 0.00 41.02 1.98
47 48 7.391148 TCCTGGCTTTTACTGTTGATATTTC 57.609 36.000 0.00 0.00 0.00 2.17
59 60 1.538512 GGTTCCGTTCCTGGCTTTTAC 59.461 52.381 0.00 0.00 0.00 2.01
61 62 0.106419 TGGTTCCGTTCCTGGCTTTT 60.106 50.000 0.00 0.00 0.00 2.27
67 68 7.767261 TGAATTAAATATTGGTTCCGTTCCTG 58.233 34.615 0.00 0.00 0.00 3.86
86 87 0.901827 TGAGCCCGAGCACTGAATTA 59.098 50.000 0.00 0.00 43.56 1.40
98 99 2.029918 TCATCGAATGTAGATGAGCCCG 60.030 50.000 4.95 0.00 46.52 6.13
109 110 8.918961 TTTTTGTTTTACTGTTCATCGAATGT 57.081 26.923 0.00 0.00 0.00 2.71
176 177 1.662629 CTCGCGCACTGAATCATCTTT 59.337 47.619 8.75 0.00 0.00 2.52
198 199 2.382371 CACGAAATTTTGCGCGCG 59.618 55.556 28.44 28.44 0.00 6.86
202 203 2.661195 CCTTTAGCCACGAAATTTTGCG 59.339 45.455 5.27 1.56 0.00 4.85
261 262 7.277760 GCTTTTGAAAACAACACTATTTGGAGT 59.722 33.333 0.00 0.00 0.00 3.85
269 270 7.027161 GTGAGAAGCTTTTGAAAACAACACTA 58.973 34.615 0.00 0.00 0.00 2.74
272 273 5.777802 TGTGAGAAGCTTTTGAAAACAACA 58.222 33.333 0.00 0.00 0.00 3.33
275 276 5.964758 ACATGTGAGAAGCTTTTGAAAACA 58.035 33.333 0.00 0.73 0.00 2.83
311 312 3.334583 TCAGTAGCTCTCGGCAAAAAT 57.665 42.857 0.00 0.00 44.79 1.82
329 330 4.698201 TCTGTACAGGTTGGACATTTCA 57.302 40.909 22.48 0.00 41.03 2.69
340 341 2.151202 CGTGCCAAATTCTGTACAGGT 58.849 47.619 22.48 9.27 0.00 4.00
344 345 4.434713 AAATCCGTGCCAAATTCTGTAC 57.565 40.909 0.00 0.00 0.00 2.90
345 346 6.576662 TTAAAATCCGTGCCAAATTCTGTA 57.423 33.333 0.00 0.00 0.00 2.74
348 349 5.848406 TGTTTAAAATCCGTGCCAAATTCT 58.152 33.333 0.00 0.00 0.00 2.40
362 363 9.974980 AAACGTTCTGATTACCATGTTTAAAAT 57.025 25.926 0.00 0.00 0.00 1.82
365 366 9.453325 GAAAAACGTTCTGATTACCATGTTTAA 57.547 29.630 0.00 0.00 0.00 1.52
366 367 8.622157 TGAAAAACGTTCTGATTACCATGTTTA 58.378 29.630 0.00 0.00 0.00 2.01
367 368 7.484975 TGAAAAACGTTCTGATTACCATGTTT 58.515 30.769 0.00 0.00 0.00 2.83
368 369 7.033530 TGAAAAACGTTCTGATTACCATGTT 57.966 32.000 0.00 0.00 0.00 2.71
369 370 6.627395 TGAAAAACGTTCTGATTACCATGT 57.373 33.333 0.00 0.00 0.00 3.21
370 371 7.271223 GTCATGAAAAACGTTCTGATTACCATG 59.729 37.037 0.00 9.61 0.00 3.66
371 372 7.040755 TGTCATGAAAAACGTTCTGATTACCAT 60.041 33.333 0.00 0.00 0.00 3.55
372 373 6.261158 TGTCATGAAAAACGTTCTGATTACCA 59.739 34.615 0.00 0.00 0.00 3.25
373 374 6.664515 TGTCATGAAAAACGTTCTGATTACC 58.335 36.000 0.00 0.00 0.00 2.85
375 376 7.925993 AGTTGTCATGAAAAACGTTCTGATTA 58.074 30.769 0.00 0.00 0.00 1.75
376 377 6.795399 AGTTGTCATGAAAAACGTTCTGATT 58.205 32.000 0.00 0.00 0.00 2.57
377 378 6.377327 AGTTGTCATGAAAAACGTTCTGAT 57.623 33.333 0.00 0.00 0.00 2.90
378 379 5.811399 AGTTGTCATGAAAAACGTTCTGA 57.189 34.783 0.00 0.00 0.00 3.27
380 381 7.758495 AGTAAAGTTGTCATGAAAAACGTTCT 58.242 30.769 19.74 15.38 30.16 3.01
381 382 7.964545 AGTAAAGTTGTCATGAAAAACGTTC 57.035 32.000 19.74 14.11 30.16 3.95
382 383 8.024285 TGAAGTAAAGTTGTCATGAAAAACGTT 58.976 29.630 19.93 19.93 31.87 3.99
383 384 7.531716 TGAAGTAAAGTTGTCATGAAAAACGT 58.468 30.769 13.91 9.85 0.00 3.99
384 385 7.962934 TGAAGTAAAGTTGTCATGAAAAACG 57.037 32.000 13.91 0.00 0.00 3.60
385 386 8.268738 GCATGAAGTAAAGTTGTCATGAAAAAC 58.731 33.333 14.88 12.53 46.73 2.43
387 388 7.487484 TGCATGAAGTAAAGTTGTCATGAAAA 58.513 30.769 14.88 0.00 46.73 2.29
388 389 7.036996 TGCATGAAGTAAAGTTGTCATGAAA 57.963 32.000 14.88 0.00 46.73 2.69
390 391 6.294120 CCTTGCATGAAGTAAAGTTGTCATGA 60.294 38.462 14.88 0.00 46.73 3.07
391 392 5.860182 CCTTGCATGAAGTAAAGTTGTCATG 59.140 40.000 0.00 7.89 46.59 3.07
392 393 5.536161 ACCTTGCATGAAGTAAAGTTGTCAT 59.464 36.000 0.00 0.00 0.00 3.06
394 395 5.438761 ACCTTGCATGAAGTAAAGTTGTC 57.561 39.130 0.00 0.00 0.00 3.18
395 396 5.451798 CCAACCTTGCATGAAGTAAAGTTGT 60.452 40.000 0.00 0.00 40.50 3.32
396 397 4.984161 CCAACCTTGCATGAAGTAAAGTTG 59.016 41.667 0.00 7.18 41.25 3.16
397 398 4.501400 GCCAACCTTGCATGAAGTAAAGTT 60.501 41.667 0.00 0.00 28.17 2.66
398 399 3.005791 GCCAACCTTGCATGAAGTAAAGT 59.994 43.478 0.00 0.00 0.00 2.66
399 400 3.005684 TGCCAACCTTGCATGAAGTAAAG 59.994 43.478 0.00 0.00 32.85 1.85
402 403 2.284754 TGCCAACCTTGCATGAAGTA 57.715 45.000 0.00 0.00 32.85 2.24
403 404 1.412079 TTGCCAACCTTGCATGAAGT 58.588 45.000 0.00 0.00 38.76 3.01
404 405 2.137523 GTTTGCCAACCTTGCATGAAG 58.862 47.619 0.00 0.00 38.76 3.02
405 406 1.483827 TGTTTGCCAACCTTGCATGAA 59.516 42.857 0.00 0.00 38.76 2.57
406 407 1.117994 TGTTTGCCAACCTTGCATGA 58.882 45.000 0.00 0.00 38.76 3.07
408 409 1.270947 CCATGTTTGCCAACCTTGCAT 60.271 47.619 0.00 0.00 38.76 3.96
409 410 0.106335 CCATGTTTGCCAACCTTGCA 59.894 50.000 0.00 0.00 36.84 4.08
410 411 1.229975 GCCATGTTTGCCAACCTTGC 61.230 55.000 0.00 0.00 31.02 4.01
411 412 0.106335 TGCCATGTTTGCCAACCTTG 59.894 50.000 0.00 0.00 31.02 3.61
412 413 0.393820 CTGCCATGTTTGCCAACCTT 59.606 50.000 0.00 0.00 31.02 3.50
413 414 0.760189 ACTGCCATGTTTGCCAACCT 60.760 50.000 0.00 0.00 31.02 3.50
414 415 0.106521 AACTGCCATGTTTGCCAACC 59.893 50.000 0.00 0.00 31.02 3.77
415 416 1.952193 AAACTGCCATGTTTGCCAAC 58.048 45.000 0.00 0.00 38.54 3.77
416 417 2.170187 AGAAAACTGCCATGTTTGCCAA 59.830 40.909 0.00 0.00 39.71 4.52
417 418 1.761784 AGAAAACTGCCATGTTTGCCA 59.238 42.857 0.00 0.00 39.71 4.92
418 419 2.531522 AGAAAACTGCCATGTTTGCC 57.468 45.000 0.00 0.00 39.71 4.52
419 420 4.367450 TGTTAGAAAACTGCCATGTTTGC 58.633 39.130 0.00 0.00 39.71 3.68
420 421 6.900568 TTTGTTAGAAAACTGCCATGTTTG 57.099 33.333 0.00 0.00 39.71 2.93
421 422 7.913674 TTTTTGTTAGAAAACTGCCATGTTT 57.086 28.000 0.00 0.00 41.32 2.83
442 443 2.742348 ACTTTGTCCCGGTTCCTTTTT 58.258 42.857 0.00 0.00 0.00 1.94
443 444 2.429250 CAACTTTGTCCCGGTTCCTTTT 59.571 45.455 0.00 0.00 0.00 2.27
444 445 2.028876 CAACTTTGTCCCGGTTCCTTT 58.971 47.619 0.00 0.00 0.00 3.11
445 446 1.064240 ACAACTTTGTCCCGGTTCCTT 60.064 47.619 0.00 0.00 36.50 3.36
446 447 0.549469 ACAACTTTGTCCCGGTTCCT 59.451 50.000 0.00 0.00 36.50 3.36
447 448 3.105187 ACAACTTTGTCCCGGTTCC 57.895 52.632 0.00 0.00 36.50 3.62
451 452 9.700024 TGTTAAAACATGACAACTTTGTCCCGG 62.700 40.741 17.44 10.25 44.11 5.73
452 453 6.897842 TGTTAAAACATGACAACTTTGTCCCG 60.898 38.462 17.44 11.52 44.11 5.14
453 454 6.334202 TGTTAAAACATGACAACTTTGTCCC 58.666 36.000 17.44 0.00 44.11 4.46
454 455 7.820044 TTGTTAAAACATGACAACTTTGTCC 57.180 32.000 17.44 2.96 44.36 4.02
499 500 8.527810 ACGTTGGATTTTAAATATGTCACCATT 58.472 29.630 0.00 0.00 32.29 3.16
500 501 8.062065 ACGTTGGATTTTAAATATGTCACCAT 57.938 30.769 0.00 0.00 34.97 3.55
504 509 7.746916 CACGAACGTTGGATTTTAAATATGTCA 59.253 33.333 17.67 0.00 0.00 3.58
614 620 2.639286 CAACACACGAGCCAAGGC 59.361 61.111 2.02 2.02 42.33 4.35
615 621 2.639286 GCAACACACGAGCCAAGG 59.361 61.111 0.00 0.00 0.00 3.61
796 802 4.152759 ACCGGTCATAAAACATAACGTGTG 59.847 41.667 0.00 0.00 41.14 3.82
807 813 2.907696 TCCTGGAGAACCGGTCATAAAA 59.092 45.455 8.04 0.00 40.75 1.52
851 857 2.686915 GTCTAGCTAAGGCACTACCGAA 59.313 50.000 0.00 0.00 46.52 4.30
864 870 5.438698 ACTGAACTCCTACAGTCTAGCTA 57.561 43.478 0.00 0.00 42.61 3.32
872 878 5.968528 AGTACTCAACTGAACTCCTACAG 57.031 43.478 0.00 0.00 36.93 2.74
892 898 4.345286 AGGAGAGGCAGCCCCAGT 62.345 66.667 8.22 0.00 35.39 4.00
908 914 6.016610 CGGTTTAAATAGAGAGGAGAGGAGAG 60.017 46.154 0.00 0.00 0.00 3.20
946 952 7.965655 GGTGTGATGAGAGTGTAGATATATTCG 59.034 40.741 0.00 0.00 0.00 3.34
948 954 7.730332 TGGGTGTGATGAGAGTGTAGATATATT 59.270 37.037 0.00 0.00 0.00 1.28
977 983 5.392767 TTCTGATCTAAGTCGAGCAAAGT 57.607 39.130 0.00 0.00 0.00 2.66
1080 1098 2.106332 CTGACATACGTCGCCCCC 59.894 66.667 0.00 0.00 45.80 5.40
1147 1165 1.905843 CCTCGATCCTCATCCGGCT 60.906 63.158 0.00 0.00 0.00 5.52
1344 1375 5.450274 CGATCAATTGAACCCACATGCAATA 60.450 40.000 13.09 0.00 31.30 1.90
1359 1390 4.668431 GCACATCCATCGATCGATCAATTG 60.668 45.833 27.20 21.67 31.62 2.32
1360 1391 3.434641 GCACATCCATCGATCGATCAATT 59.565 43.478 27.20 10.17 31.62 2.32
1363 1394 1.340889 TGCACATCCATCGATCGATCA 59.659 47.619 27.20 17.02 31.62 2.92
1367 1398 0.165295 GCATGCACATCCATCGATCG 59.835 55.000 14.21 9.36 0.00 3.69
1552 1583 2.534011 TGGGGGAAGATGGTGGCA 60.534 61.111 0.00 0.00 0.00 4.92
1694 1725 8.953313 TGCAGCCATTGATTGATATTATAAGAG 58.047 33.333 0.00 0.00 0.00 2.85
1702 1733 8.762481 ATGTATATGCAGCCATTGATTGATAT 57.238 30.769 0.00 0.00 32.85 1.63
1718 1770 5.401376 ACGACGTTGACACATATGTATATGC 59.599 40.000 10.51 0.00 42.98 3.14
1723 1775 3.419004 CGACGACGTTGACACATATGTA 58.581 45.455 10.51 0.00 35.31 2.29
1725 1777 1.582052 CCGACGACGTTGACACATATG 59.418 52.381 16.96 0.00 37.88 1.78
1729 1781 2.656007 GCCGACGACGTTGACACA 60.656 61.111 16.96 0.00 37.88 3.72
1731 1783 3.215597 ATGGCCGACGACGTTGACA 62.216 57.895 16.96 12.76 37.88 3.58
1735 1800 2.198906 TAACGATGGCCGACGACGTT 62.199 55.000 24.13 22.57 46.15 3.99
1737 1802 1.514657 TTAACGATGGCCGACGACG 60.515 57.895 24.13 14.78 41.76 5.12
1741 1806 1.062002 CATGTGTTAACGATGGCCGAC 59.938 52.381 0.00 0.00 41.76 4.79
1746 1811 2.286359 CGGATGCATGTGTTAACGATGG 60.286 50.000 2.46 2.29 0.00 3.51
1868 1952 3.882326 CTGCAGGCCGGGGATGAT 61.882 66.667 5.57 0.00 0.00 2.45
2104 2188 1.961277 CTTGACGCCGTTCCAGCTT 60.961 57.895 0.00 0.00 0.00 3.74
2189 2276 4.165036 TGACAATGTATGCAAATTGACGC 58.835 39.130 20.62 12.52 37.26 5.19
2191 2278 7.328982 TGACAATGACAATGTATGCAAATTGAC 59.671 33.333 20.62 16.33 37.26 3.18
2194 2281 8.661257 CAATGACAATGACAATGTATGCAAATT 58.339 29.630 0.00 0.00 0.00 1.82
2196 2283 7.153315 ACAATGACAATGACAATGTATGCAAA 58.847 30.769 4.72 0.00 30.97 3.68
2199 2286 6.324042 TGACAATGACAATGACAATGTATGC 58.676 36.000 6.41 0.00 32.57 3.14
2201 2288 9.577110 GAAATGACAATGACAATGACAATGTAT 57.423 29.630 6.41 0.17 32.57 2.29
2208 2295 5.728049 CGTACGAAATGACAATGACAATGAC 59.272 40.000 10.44 0.00 0.00 3.06
2209 2296 5.407084 ACGTACGAAATGACAATGACAATGA 59.593 36.000 24.41 0.00 0.00 2.57
2230 2412 1.733041 CGTGTCAAGCGATGGACGT 60.733 57.895 3.33 0.00 44.60 4.34
2232 2414 0.989890 GTACGTGTCAAGCGATGGAC 59.010 55.000 0.00 0.00 34.63 4.02
2235 2417 0.731514 ACCGTACGTGTCAAGCGATG 60.732 55.000 15.21 0.00 0.00 3.84
2236 2418 0.731514 CACCGTACGTGTCAAGCGAT 60.732 55.000 15.21 0.00 37.73 4.58
2239 2421 2.664436 GCCACCGTACGTGTCAAGC 61.664 63.158 15.21 10.06 41.26 4.01
2253 2444 1.805428 ATCACAAAACCCTGCGCCAC 61.805 55.000 4.18 0.00 0.00 5.01
2254 2445 1.523154 GATCACAAAACCCTGCGCCA 61.523 55.000 4.18 0.00 0.00 5.69
2255 2446 1.212751 GATCACAAAACCCTGCGCC 59.787 57.895 4.18 0.00 0.00 6.53
2545 2756 4.785453 GCTCCCGGTGCTCCTTGG 62.785 72.222 0.00 3.71 0.00 3.61
2726 2937 4.394712 CCGGACTGACCCTGCCAC 62.395 72.222 0.00 0.00 34.64 5.01
2774 2993 0.678048 GAAAGATGGCAAGGCGAGGT 60.678 55.000 0.00 0.00 0.00 3.85
2776 2995 1.457346 AAGAAAGATGGCAAGGCGAG 58.543 50.000 0.00 0.00 0.00 5.03
2783 3002 4.401022 AGATGTGTGAAAGAAAGATGGCA 58.599 39.130 0.00 0.00 0.00 4.92
2784 3003 4.699257 AGAGATGTGTGAAAGAAAGATGGC 59.301 41.667 0.00 0.00 0.00 4.40
2785 3004 6.171921 AGAGAGATGTGTGAAAGAAAGATGG 58.828 40.000 0.00 0.00 0.00 3.51
2820 3039 0.035725 TACAAGAGGAGCGGTCTCGA 60.036 55.000 15.18 0.00 40.26 4.04
2824 3043 0.173708 CAGGTACAAGAGGAGCGGTC 59.826 60.000 5.93 5.93 0.00 4.79
2825 3044 0.542232 ACAGGTACAAGAGGAGCGGT 60.542 55.000 0.00 0.00 0.00 5.68
2826 3045 0.608640 AACAGGTACAAGAGGAGCGG 59.391 55.000 0.00 0.00 0.00 5.52
2831 3050 8.964476 ATATAAACATCAACAGGTACAAGAGG 57.036 34.615 0.00 0.00 0.00 3.69
2857 3081 6.903534 ACTCTTTCAAGGATGGAGGAAGTATA 59.096 38.462 0.00 0.00 0.00 1.47
2859 3083 5.046304 CACTCTTTCAAGGATGGAGGAAGTA 60.046 44.000 0.00 0.00 0.00 2.24
2860 3084 3.913163 ACTCTTTCAAGGATGGAGGAAGT 59.087 43.478 0.00 0.00 0.00 3.01
2861 3085 4.260170 CACTCTTTCAAGGATGGAGGAAG 58.740 47.826 0.00 0.00 0.00 3.46
2864 3088 3.710209 ACACTCTTTCAAGGATGGAGG 57.290 47.619 0.00 0.00 0.00 4.30
2867 3091 9.626045 GTTAAAAATACACTCTTTCAAGGATGG 57.374 33.333 0.00 0.00 0.00 3.51
2902 3126 9.933723 TCGGTAGCTTTTAAATAGTTTAACTCT 57.066 29.630 0.00 0.00 35.03 3.24
2904 3128 9.716531 ACTCGGTAGCTTTTAAATAGTTTAACT 57.283 29.630 2.32 2.32 35.03 2.24
2908 3132 8.843262 ACAAACTCGGTAGCTTTTAAATAGTTT 58.157 29.630 0.00 0.00 35.62 2.66
2909 3133 8.287503 CACAAACTCGGTAGCTTTTAAATAGTT 58.712 33.333 0.00 0.00 0.00 2.24
2910 3134 7.572539 GCACAAACTCGGTAGCTTTTAAATAGT 60.573 37.037 0.00 0.00 0.00 2.12
2911 3135 6.741358 GCACAAACTCGGTAGCTTTTAAATAG 59.259 38.462 0.00 0.00 0.00 1.73
2912 3136 6.205076 TGCACAAACTCGGTAGCTTTTAAATA 59.795 34.615 0.00 0.00 0.00 1.40
2913 3137 5.009210 TGCACAAACTCGGTAGCTTTTAAAT 59.991 36.000 0.00 0.00 0.00 1.40
2914 3138 4.335874 TGCACAAACTCGGTAGCTTTTAAA 59.664 37.500 0.00 0.00 0.00 1.52
2915 3139 3.878103 TGCACAAACTCGGTAGCTTTTAA 59.122 39.130 0.00 0.00 0.00 1.52
2916 3140 3.468770 TGCACAAACTCGGTAGCTTTTA 58.531 40.909 0.00 0.00 0.00 1.52
2917 3141 2.294074 TGCACAAACTCGGTAGCTTTT 58.706 42.857 0.00 0.00 0.00 2.27
2918 3142 1.961793 TGCACAAACTCGGTAGCTTT 58.038 45.000 0.00 0.00 0.00 3.51
2919 3143 1.961793 TTGCACAAACTCGGTAGCTT 58.038 45.000 0.00 0.00 0.00 3.74
2920 3144 1.961793 TTTGCACAAACTCGGTAGCT 58.038 45.000 0.00 0.00 0.00 3.32
2921 3145 2.766970 TTTTGCACAAACTCGGTAGC 57.233 45.000 0.00 0.00 0.00 3.58
2922 3146 8.394877 TGATATATTTTTGCACAAACTCGGTAG 58.605 33.333 0.00 0.00 0.00 3.18
2923 3147 8.270080 TGATATATTTTTGCACAAACTCGGTA 57.730 30.769 0.00 0.00 0.00 4.02
2924 3148 7.151999 TGATATATTTTTGCACAAACTCGGT 57.848 32.000 0.00 0.00 0.00 4.69
2925 3149 8.633075 ATTGATATATTTTTGCACAAACTCGG 57.367 30.769 0.00 0.00 0.00 4.63
2995 3219 8.352201 GCCATCAAATTAGTAGCATTCAATACA 58.648 33.333 0.00 0.00 0.00 2.29
2996 3220 8.352201 TGCCATCAAATTAGTAGCATTCAATAC 58.648 33.333 0.00 0.00 0.00 1.89
2997 3221 8.462589 TGCCATCAAATTAGTAGCATTCAATA 57.537 30.769 0.00 0.00 0.00 1.90
2998 3222 7.350744 TGCCATCAAATTAGTAGCATTCAAT 57.649 32.000 0.00 0.00 0.00 2.57
2999 3223 6.772360 TGCCATCAAATTAGTAGCATTCAA 57.228 33.333 0.00 0.00 0.00 2.69
3000 3224 6.964807 ATGCCATCAAATTAGTAGCATTCA 57.035 33.333 0.00 0.00 36.10 2.57
3001 3225 9.918630 ATTTATGCCATCAAATTAGTAGCATTC 57.081 29.630 0.00 0.00 39.89 2.67
3099 3323 6.059484 ACATACTTCCTCCGTTCTTCAAAAA 58.941 36.000 0.00 0.00 0.00 1.94
3100 3324 5.617252 ACATACTTCCTCCGTTCTTCAAAA 58.383 37.500 0.00 0.00 0.00 2.44
3101 3325 5.221561 TGACATACTTCCTCCGTTCTTCAAA 60.222 40.000 0.00 0.00 0.00 2.69
3102 3326 4.282449 TGACATACTTCCTCCGTTCTTCAA 59.718 41.667 0.00 0.00 0.00 2.69
3103 3327 3.830178 TGACATACTTCCTCCGTTCTTCA 59.170 43.478 0.00 0.00 0.00 3.02
3104 3328 4.425520 CTGACATACTTCCTCCGTTCTTC 58.574 47.826 0.00 0.00 0.00 2.87
3105 3329 3.368531 GCTGACATACTTCCTCCGTTCTT 60.369 47.826 0.00 0.00 0.00 2.52
3106 3330 2.166664 GCTGACATACTTCCTCCGTTCT 59.833 50.000 0.00 0.00 0.00 3.01
3107 3331 2.166664 AGCTGACATACTTCCTCCGTTC 59.833 50.000 0.00 0.00 0.00 3.95
3108 3332 2.093973 CAGCTGACATACTTCCTCCGTT 60.094 50.000 8.42 0.00 0.00 4.44
3109 3333 1.478510 CAGCTGACATACTTCCTCCGT 59.521 52.381 8.42 0.00 0.00 4.69
3110 3334 1.478510 ACAGCTGACATACTTCCTCCG 59.521 52.381 23.35 0.00 0.00 4.63
3111 3335 3.055819 TCAACAGCTGACATACTTCCTCC 60.056 47.826 23.35 0.00 0.00 4.30
3112 3336 4.193826 TCAACAGCTGACATACTTCCTC 57.806 45.455 23.35 0.00 0.00 3.71
3124 3348 2.327081 ACGTACGTAGTCAACAGCTG 57.673 50.000 21.41 13.48 43.93 4.24
3341 3571 4.227134 CTGATGACCTCCGGCCCG 62.227 72.222 0.00 0.00 0.00 6.13
3506 3736 0.904865 TGCCAGAGAATCCGTGGTCT 60.905 55.000 1.09 0.00 33.66 3.85
3611 3841 1.228657 GCTTGGTGGTGAGTCCGAAC 61.229 60.000 0.00 0.00 39.52 3.95
3650 3883 2.842936 GAGGGGCGGGCTAAGCTA 60.843 66.667 0.26 0.00 34.52 3.32
3659 3892 2.152297 CTCGATCTGATGAGGGGCGG 62.152 65.000 0.00 0.00 0.00 6.13
3660 3893 1.288439 CTCGATCTGATGAGGGGCG 59.712 63.158 0.00 0.00 0.00 6.13
3696 3929 3.996921 ATCTGAGGCTAATGCTATGGG 57.003 47.619 0.00 0.00 39.59 4.00
3746 4001 2.359214 CGATCGATTTCTCACTCAGGGA 59.641 50.000 10.26 0.00 0.00 4.20
3783 4038 4.873827 ACGTATATGCGATCAAAACCTTGT 59.126 37.500 20.38 0.00 33.49 3.16
3846 4103 4.142359 ACTGTGGCGTCACTAGAGATTTAG 60.142 45.833 22.43 9.19 43.94 1.85
3847 4104 3.762288 ACTGTGGCGTCACTAGAGATTTA 59.238 43.478 22.43 0.00 43.94 1.40
3848 4105 2.563179 ACTGTGGCGTCACTAGAGATTT 59.437 45.455 22.43 0.00 43.94 2.17
3861 4119 0.240945 GGATGGACAAAACTGTGGCG 59.759 55.000 0.00 0.00 0.00 5.69
3871 4129 3.009033 AGTTGAGAATTCGGGATGGACAA 59.991 43.478 0.00 0.00 0.00 3.18
3876 4134 3.553511 CGAGAAGTTGAGAATTCGGGATG 59.446 47.826 0.00 0.00 0.00 3.51
3881 4139 2.960819 ACCCGAGAAGTTGAGAATTCG 58.039 47.619 0.00 0.00 0.00 3.34
3886 4144 2.963101 TGAAGAACCCGAGAAGTTGAGA 59.037 45.455 0.00 0.00 0.00 3.27
3887 4145 3.060602 GTGAAGAACCCGAGAAGTTGAG 58.939 50.000 0.00 0.00 0.00 3.02
3899 4161 4.262617 GGAGGGAGTAATTGTGAAGAACC 58.737 47.826 0.00 0.00 0.00 3.62
3904 4166 3.581332 AGAACGGAGGGAGTAATTGTGAA 59.419 43.478 0.00 0.00 0.00 3.18
3912 4174 4.410099 TCTGTTTTAGAACGGAGGGAGTA 58.590 43.478 3.60 0.00 44.24 2.59
3913 4175 3.236896 TCTGTTTTAGAACGGAGGGAGT 58.763 45.455 3.60 0.00 44.24 3.85
3914 4176 3.955650 TCTGTTTTAGAACGGAGGGAG 57.044 47.619 3.60 0.00 44.24 4.30
3920 4182 5.666969 TTGTGTCATCTGTTTTAGAACGG 57.333 39.130 0.00 0.00 42.39 4.44
3921 4183 8.560576 AAAATTGTGTCATCTGTTTTAGAACG 57.439 30.769 0.00 0.00 39.30 3.95
3929 4191 9.959721 AGGTAGTATAAAATTGTGTCATCTGTT 57.040 29.630 0.00 0.00 0.00 3.16
3930 4192 9.601217 GAGGTAGTATAAAATTGTGTCATCTGT 57.399 33.333 0.00 0.00 0.00 3.41
3931 4193 9.823647 AGAGGTAGTATAAAATTGTGTCATCTG 57.176 33.333 0.00 0.00 0.00 2.90
3933 4195 8.969267 CGAGAGGTAGTATAAAATTGTGTCATC 58.031 37.037 0.00 0.00 0.00 2.92
3934 4196 8.475639 ACGAGAGGTAGTATAAAATTGTGTCAT 58.524 33.333 0.00 0.00 0.00 3.06
3935 4197 7.833786 ACGAGAGGTAGTATAAAATTGTGTCA 58.166 34.615 0.00 0.00 0.00 3.58
3936 4198 7.972277 TGACGAGAGGTAGTATAAAATTGTGTC 59.028 37.037 0.00 0.00 0.00 3.67
3937 4199 7.833786 TGACGAGAGGTAGTATAAAATTGTGT 58.166 34.615 0.00 0.00 0.00 3.72
3938 4200 7.043325 GCTGACGAGAGGTAGTATAAAATTGTG 60.043 40.741 0.00 0.00 0.00 3.33
3939 4201 6.979238 GCTGACGAGAGGTAGTATAAAATTGT 59.021 38.462 0.00 0.00 0.00 2.71
3940 4202 6.978659 TGCTGACGAGAGGTAGTATAAAATTG 59.021 38.462 0.00 0.00 0.00 2.32
3941 4203 7.108841 TGCTGACGAGAGGTAGTATAAAATT 57.891 36.000 0.00 0.00 0.00 1.82
3942 4204 6.710597 TGCTGACGAGAGGTAGTATAAAAT 57.289 37.500 0.00 0.00 0.00 1.82
3943 4205 6.096423 ACATGCTGACGAGAGGTAGTATAAAA 59.904 38.462 0.00 0.00 0.00 1.52
3944 4206 5.593095 ACATGCTGACGAGAGGTAGTATAAA 59.407 40.000 0.00 0.00 0.00 1.40
3945 4207 5.008712 CACATGCTGACGAGAGGTAGTATAA 59.991 44.000 0.00 0.00 0.00 0.98
3946 4208 4.515567 CACATGCTGACGAGAGGTAGTATA 59.484 45.833 0.00 0.00 0.00 1.47
3947 4209 3.316588 CACATGCTGACGAGAGGTAGTAT 59.683 47.826 0.00 0.00 0.00 2.12
3948 4210 2.683362 CACATGCTGACGAGAGGTAGTA 59.317 50.000 0.00 0.00 0.00 1.82
3949 4211 1.474478 CACATGCTGACGAGAGGTAGT 59.526 52.381 0.00 0.00 0.00 2.73
3950 4212 1.745653 TCACATGCTGACGAGAGGTAG 59.254 52.381 0.00 0.00 0.00 3.18
3951 4213 1.472878 GTCACATGCTGACGAGAGGTA 59.527 52.381 11.08 0.00 40.14 3.08
3952 4214 0.244994 GTCACATGCTGACGAGAGGT 59.755 55.000 11.08 0.00 40.14 3.85
3953 4215 3.041874 GTCACATGCTGACGAGAGG 57.958 57.895 11.08 0.00 40.14 3.69
3959 4221 2.103042 GGAGCCGTCACATGCTGAC 61.103 63.158 14.67 14.67 45.38 3.51
3960 4222 2.265739 GGAGCCGTCACATGCTGA 59.734 61.111 0.00 0.00 38.11 4.26
3961 4223 3.190849 CGGAGCCGTCACATGCTG 61.191 66.667 0.00 0.00 38.11 4.41
3971 4233 2.203015 CCCACCATTACGGAGCCG 60.203 66.667 7.48 7.48 46.03 5.52
3972 4234 2.192175 CCCCACCATTACGGAGCC 59.808 66.667 0.00 0.00 38.63 4.70
3973 4235 2.516225 GCCCCACCATTACGGAGC 60.516 66.667 0.00 0.00 38.63 4.70
3974 4236 1.029947 GTTGCCCCACCATTACGGAG 61.030 60.000 0.00 0.00 38.63 4.63
3975 4237 1.001887 GTTGCCCCACCATTACGGA 60.002 57.895 0.00 0.00 38.63 4.69
3976 4238 2.049767 GGTTGCCCCACCATTACGG 61.050 63.158 0.00 0.00 42.50 4.02
3977 4239 0.610785 AAGGTTGCCCCACCATTACG 60.611 55.000 0.09 0.00 39.62 3.18
3978 4240 1.275010 CAAAGGTTGCCCCACCATTAC 59.725 52.381 0.09 0.00 39.62 1.89
3979 4241 1.638529 CAAAGGTTGCCCCACCATTA 58.361 50.000 0.09 0.00 39.62 1.90
3980 4242 2.450992 CAAAGGTTGCCCCACCATT 58.549 52.632 0.09 0.00 39.62 3.16
3981 4243 4.213630 CAAAGGTTGCCCCACCAT 57.786 55.556 0.09 0.00 39.62 3.55
3990 4252 0.511221 CGTGTACTCGGCAAAGGTTG 59.489 55.000 9.41 0.00 0.00 3.77
3991 4253 0.390124 TCGTGTACTCGGCAAAGGTT 59.610 50.000 16.50 0.00 0.00 3.50
3992 4254 0.038526 CTCGTGTACTCGGCAAAGGT 60.039 55.000 16.50 0.00 0.00 3.50
3993 4255 0.242825 TCTCGTGTACTCGGCAAAGG 59.757 55.000 16.50 2.44 0.00 3.11
3994 4256 2.060326 TTCTCGTGTACTCGGCAAAG 57.940 50.000 16.50 7.34 0.00 2.77
3995 4257 2.129607 GTTTCTCGTGTACTCGGCAAA 58.870 47.619 16.50 12.31 0.00 3.68
3996 4258 1.338973 AGTTTCTCGTGTACTCGGCAA 59.661 47.619 16.50 7.46 0.00 4.52
3997 4259 0.956633 AGTTTCTCGTGTACTCGGCA 59.043 50.000 16.50 1.76 0.00 5.69
3998 4260 2.907910 TAGTTTCTCGTGTACTCGGC 57.092 50.000 16.50 3.81 0.00 5.54
3999 4261 3.756069 CCTTAGTTTCTCGTGTACTCGG 58.244 50.000 16.50 8.18 0.00 4.63
4000 4262 3.169733 GCCTTAGTTTCTCGTGTACTCG 58.830 50.000 10.97 10.97 0.00 4.18
4001 4263 3.193056 AGGCCTTAGTTTCTCGTGTACTC 59.807 47.826 0.00 0.00 0.00 2.59
4002 4264 3.163467 AGGCCTTAGTTTCTCGTGTACT 58.837 45.455 0.00 0.00 0.00 2.73
4003 4265 3.589495 AGGCCTTAGTTTCTCGTGTAC 57.411 47.619 0.00 0.00 0.00 2.90
4004 4266 3.322828 ACAAGGCCTTAGTTTCTCGTGTA 59.677 43.478 20.00 0.00 0.00 2.90
4005 4267 2.104281 ACAAGGCCTTAGTTTCTCGTGT 59.896 45.455 20.00 5.52 0.00 4.49
4006 4268 2.767505 ACAAGGCCTTAGTTTCTCGTG 58.232 47.619 20.00 4.77 0.00 4.35
4007 4269 3.487120 AACAAGGCCTTAGTTTCTCGT 57.513 42.857 20.00 6.33 0.00 4.18
4008 4270 3.058224 CCAAACAAGGCCTTAGTTTCTCG 60.058 47.826 28.34 21.36 33.54 4.04
4009 4271 4.505313 CCAAACAAGGCCTTAGTTTCTC 57.495 45.455 28.34 0.00 33.54 2.87
4021 4283 6.655003 TCTTAGAACTTATGAGCCAAACAAGG 59.345 38.462 0.00 0.00 0.00 3.61
4022 4284 7.389053 AGTCTTAGAACTTATGAGCCAAACAAG 59.611 37.037 0.00 0.00 0.00 3.16
4023 4285 7.224297 AGTCTTAGAACTTATGAGCCAAACAA 58.776 34.615 0.00 0.00 0.00 2.83
4024 4286 6.769512 AGTCTTAGAACTTATGAGCCAAACA 58.230 36.000 0.00 0.00 0.00 2.83
4025 4287 7.674471 AAGTCTTAGAACTTATGAGCCAAAC 57.326 36.000 0.00 0.00 37.71 2.93
4026 4288 8.691661 AAAAGTCTTAGAACTTATGAGCCAAA 57.308 30.769 0.00 0.00 38.52 3.28
4027 4289 8.691661 AAAAAGTCTTAGAACTTATGAGCCAA 57.308 30.769 0.00 0.00 38.52 4.52
4051 4313 9.528489 AGATGCCCTTATAAGTTGAAACTAAAA 57.472 29.630 11.50 0.00 38.57 1.52
4052 4314 9.174166 GAGATGCCCTTATAAGTTGAAACTAAA 57.826 33.333 11.50 0.00 38.57 1.85
4053 4315 7.773690 GGAGATGCCCTTATAAGTTGAAACTAA 59.226 37.037 11.50 0.00 38.57 2.24
4054 4316 7.092623 TGGAGATGCCCTTATAAGTTGAAACTA 60.093 37.037 11.50 0.00 35.07 2.24
4055 4317 6.122964 GGAGATGCCCTTATAAGTTGAAACT 58.877 40.000 11.50 1.44 42.04 2.66
4056 4318 5.885912 TGGAGATGCCCTTATAAGTTGAAAC 59.114 40.000 11.50 0.00 34.97 2.78
4057 4319 6.073447 TGGAGATGCCCTTATAAGTTGAAA 57.927 37.500 11.50 0.00 34.97 2.69
4058 4320 5.684704 CTGGAGATGCCCTTATAAGTTGAA 58.315 41.667 11.50 0.00 34.97 2.69
4059 4321 4.444876 GCTGGAGATGCCCTTATAAGTTGA 60.445 45.833 11.50 0.00 34.97 3.18
4060 4322 3.817647 GCTGGAGATGCCCTTATAAGTTG 59.182 47.826 11.50 3.65 34.97 3.16
4061 4323 3.181439 GGCTGGAGATGCCCTTATAAGTT 60.181 47.826 11.50 0.00 44.32 2.66
4062 4324 2.373502 GGCTGGAGATGCCCTTATAAGT 59.626 50.000 11.50 0.00 44.32 2.24
4063 4325 3.064900 GGCTGGAGATGCCCTTATAAG 57.935 52.381 5.43 5.43 44.32 1.73
4204 4481 0.385598 GGCGTCTTTTGAAAGCGGAC 60.386 55.000 16.17 4.10 36.64 4.79
4205 4482 0.816018 TGGCGTCTTTTGAAAGCGGA 60.816 50.000 16.17 0.00 36.64 5.54
4211 4488 2.287308 CGGATTTGTGGCGTCTTTTGAA 60.287 45.455 0.00 0.00 0.00 2.69
4363 4687 2.786495 CGCCTCTACATCACCGCCT 61.786 63.158 0.00 0.00 0.00 5.52
4369 4693 0.098200 CGAACGACGCCTCTACATCA 59.902 55.000 0.00 0.00 34.51 3.07
4498 4822 1.081175 CAACGACGAGCAGCTCAGA 60.081 57.895 22.49 0.00 0.00 3.27
4567 4891 2.651137 GAACGTCGCCGCGAAGAAA 61.651 57.895 30.89 0.99 37.53 2.52
4612 4936 1.269723 TCGTCGCTGATGAAGAACAGT 59.730 47.619 0.00 0.00 36.62 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.