Multiple sequence alignment - TraesCS2A01G591300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G591300 chr2A 100.000 6816 0 0 1 6816 778924576 778917761 0.000000e+00 12587.0
1 TraesCS2A01G591300 chr2A 85.259 251 21 13 5760 6002 779187959 779187717 1.900000e-60 244.0
2 TraesCS2A01G591300 chr2A 94.737 38 2 0 6059 6096 197790038 197790001 7.380000e-05 60.2
3 TraesCS2A01G591300 chr2B 93.400 6091 215 82 2 5987 777512244 777518252 0.000000e+00 8848.0
4 TraesCS2A01G591300 chr2B 79.513 698 98 22 6104 6773 777518273 777518953 8.060000e-124 455.0
5 TraesCS2A01G591300 chr2B 85.393 267 22 12 5760 6017 777361822 777362080 1.890000e-65 261.0
6 TraesCS2A01G591300 chr2B 97.561 41 1 0 2 42 777510331 777510371 3.410000e-08 71.3
7 TraesCS2A01G591300 chr2B 94.872 39 1 1 6059 6096 239194757 239194719 7.380000e-05 60.2
8 TraesCS2A01G591300 chr2D 95.841 4857 151 18 1194 6017 634471287 634476125 0.000000e+00 7803.0
9 TraesCS2A01G591300 chr2D 92.369 747 24 18 422 1154 634470554 634471281 0.000000e+00 1033.0
10 TraesCS2A01G591300 chr2D 79.801 703 94 17 6104 6774 634476122 634476808 1.040000e-127 468.0
11 TraesCS2A01G591300 chr2D 93.939 264 4 5 2 255 634469878 634470139 8.290000e-104 388.0
12 TraesCS2A01G591300 chr2D 86.939 245 16 12 5760 5996 634432473 634432709 1.890000e-65 261.0
13 TraesCS2A01G591300 chr2D 90.361 83 7 1 6015 6096 122866113 122866195 2.600000e-19 108.0
14 TraesCS2A01G591300 chr6A 91.463 82 6 1 6016 6096 58311686 58311767 2.010000e-20 111.0
15 TraesCS2A01G591300 chr3A 89.873 79 7 1 6019 6096 100432649 100432727 4.350000e-17 100.0
16 TraesCS2A01G591300 chr7B 90.541 74 6 1 6016 6088 23992649 23992722 5.630000e-16 97.1
17 TraesCS2A01G591300 chr1B 90.541 74 6 1 6016 6088 593515675 593515748 5.630000e-16 97.1
18 TraesCS2A01G591300 chr1A 87.805 82 9 1 6014 6094 419033838 419033919 2.020000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G591300 chr2A 778917761 778924576 6815 True 12587.000000 12587 100.0000 1 6816 1 chr2A.!!$R2 6815
1 TraesCS2A01G591300 chr2B 777510331 777518953 8622 False 3124.766667 8848 90.1580 2 6773 3 chr2B.!!$F2 6771
2 TraesCS2A01G591300 chr2D 634469878 634476808 6930 False 2423.000000 7803 90.4875 2 6774 4 chr2D.!!$F3 6772

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
354 2297 1.074850 CCCCTTCTCCCTCTCCTCC 60.075 68.421 0.00 0.00 0.00 4.30 F
1162 3393 0.394899 CTTCTTGCCTCCCCACCATC 60.395 60.000 0.00 0.00 0.00 3.51 F
1729 3963 0.039437 CGCACGGGATAAGCTACGAT 60.039 55.000 0.00 0.00 0.00 3.73 F
2378 4612 0.248289 GCAGTTGGCCTTGCATCAAT 59.752 50.000 18.48 0.00 40.02 2.57 F
2818 5052 1.650912 GGCTGCCTTATGCGATGTG 59.349 57.895 12.43 0.00 45.60 3.21 F
3772 6009 0.887933 CCAGGCTTGCAAATTACGGT 59.112 50.000 0.00 0.00 0.00 4.83 F
4448 6686 0.177604 CGAGAGCTCATCAAGGCCTT 59.822 55.000 13.78 13.78 0.00 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1191 3422 0.179037 TCAGCAGCAAACAGAGCACT 60.179 50.000 0.00 0.0 0.00 4.40 R
2014 4248 0.324091 AAGCATCCTTGAGGCCCTTG 60.324 55.000 0.00 0.0 40.43 3.61 R
3520 5756 1.160329 ACTGTTGCTGAGGTTGACGC 61.160 55.000 0.00 0.0 0.00 5.19 R
3750 5987 1.750778 CGTAATTTGCAAGCCTGGGAT 59.249 47.619 0.00 0.0 0.00 3.85 R
4382 6620 1.509923 GCATTCAGCTGCCAAGTCC 59.490 57.895 9.47 0.0 41.15 3.85 R
5189 7428 0.534203 GTTCTTGGCTGTTCACCCGA 60.534 55.000 0.00 0.0 0.00 5.14 R
6083 8359 0.042731 CCCTCAGTCCCTCCTTACCA 59.957 60.000 0.00 0.0 0.00 3.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
153 2087 1.759299 ACACATGGCCATGGGATGC 60.759 57.895 46.64 0.00 44.83 3.91
160 2094 3.224324 CCATGGGATGCTGGCAGC 61.224 66.667 31.91 31.91 42.82 5.25
181 2115 7.153985 GCAGCATAGATAGAGAAATTCAGACT 58.846 38.462 0.00 0.00 0.00 3.24
352 2295 1.869452 ACCCCCTTCTCCCTCTCCT 60.869 63.158 0.00 0.00 0.00 3.69
354 2297 1.074850 CCCCTTCTCCCTCTCCTCC 60.075 68.421 0.00 0.00 0.00 4.30
479 2679 4.531426 ATCGAGGAGGGCTCGCCT 62.531 66.667 9.39 9.39 46.09 5.52
482 2682 3.535962 GAGGAGGGCTCGCCTGAG 61.536 72.222 16.08 0.00 43.40 3.35
584 2784 4.548513 CTCCCTCCCTCCCTCCCG 62.549 77.778 0.00 0.00 0.00 5.14
626 2828 2.577911 GGAAAGCGCGCATCTTGC 60.578 61.111 35.10 23.15 40.69 4.01
830 3060 1.301677 GCTAGCTGCTTCGTTGGCTT 61.302 55.000 7.79 0.00 38.95 4.35
951 3182 2.052104 GGGGTTTGGGCAGATTCGG 61.052 63.158 0.00 0.00 0.00 4.30
967 3198 2.585153 GGAGGAAGAAGACGGGGC 59.415 66.667 0.00 0.00 0.00 5.80
1159 3390 2.356667 CCTTCTTGCCTCCCCACC 59.643 66.667 0.00 0.00 0.00 4.61
1160 3391 2.538141 CCTTCTTGCCTCCCCACCA 61.538 63.158 0.00 0.00 0.00 4.17
1161 3392 1.693640 CTTCTTGCCTCCCCACCAT 59.306 57.895 0.00 0.00 0.00 3.55
1162 3393 0.394899 CTTCTTGCCTCCCCACCATC 60.395 60.000 0.00 0.00 0.00 3.51
1163 3394 1.863155 TTCTTGCCTCCCCACCATCC 61.863 60.000 0.00 0.00 0.00 3.51
1164 3395 3.346734 TTGCCTCCCCACCATCCC 61.347 66.667 0.00 0.00 0.00 3.85
1165 3396 3.908712 TTGCCTCCCCACCATCCCT 62.909 63.158 0.00 0.00 0.00 4.20
1166 3397 2.039831 GCCTCCCCACCATCCCTA 60.040 66.667 0.00 0.00 0.00 3.53
1177 3408 3.364549 CACCATCCCTAATTTCCTTGCA 58.635 45.455 0.00 0.00 0.00 4.08
1179 3410 2.363359 CCATCCCTAATTTCCTTGCAGC 59.637 50.000 0.00 0.00 0.00 5.25
1180 3411 1.750193 TCCCTAATTTCCTTGCAGCG 58.250 50.000 0.00 0.00 0.00 5.18
1181 3412 1.280710 TCCCTAATTTCCTTGCAGCGA 59.719 47.619 0.00 0.00 0.00 4.93
1182 3413 1.672881 CCCTAATTTCCTTGCAGCGAG 59.327 52.381 2.08 2.08 0.00 5.03
1183 3414 1.672881 CCTAATTTCCTTGCAGCGAGG 59.327 52.381 21.92 21.92 36.39 4.63
1184 3415 1.064654 CTAATTTCCTTGCAGCGAGGC 59.935 52.381 22.99 0.00 35.08 4.70
1185 3416 0.895100 AATTTCCTTGCAGCGAGGCA 60.895 50.000 22.99 10.61 43.19 4.75
1186 3417 1.310933 ATTTCCTTGCAGCGAGGCAG 61.311 55.000 22.99 0.92 45.88 4.85
1187 3418 2.680974 TTTCCTTGCAGCGAGGCAGT 62.681 55.000 22.99 0.00 45.88 4.40
1188 3419 1.826340 TTCCTTGCAGCGAGGCAGTA 61.826 55.000 22.99 3.71 45.88 2.74
1191 3422 0.950555 CTTGCAGCGAGGCAGTACAA 60.951 55.000 0.94 0.00 45.88 2.41
1214 3445 2.287970 TGCTCTGTTTGCTGCTGAATTG 60.288 45.455 0.00 0.00 0.00 2.32
1219 3450 4.337836 TCTGTTTGCTGCTGAATTGTGTTA 59.662 37.500 0.00 0.00 0.00 2.41
1221 3452 6.206438 TCTGTTTGCTGCTGAATTGTGTTATA 59.794 34.615 0.00 0.00 0.00 0.98
1222 3453 6.743110 TGTTTGCTGCTGAATTGTGTTATAA 58.257 32.000 0.00 0.00 0.00 0.98
1249 3480 6.238648 ACCTTGGTTAATTAGTCTGGTCTTG 58.761 40.000 0.00 0.00 0.00 3.02
1324 3558 2.419324 GTGAAGAGCCAGCTGATTCAAG 59.581 50.000 17.39 0.00 33.19 3.02
1343 3577 4.640201 TCAAGTGTCTTTCCTTGTCTTTGG 59.360 41.667 0.00 0.00 39.25 3.28
1402 3636 2.348998 CTCCCGCACTTCAAGCCT 59.651 61.111 0.00 0.00 0.00 4.58
1462 3696 3.232279 GGAGTACTGCCCTCCTGAT 57.768 57.895 0.00 0.00 44.29 2.90
1498 3732 1.763770 CCTGCTCCAGTTCCAGGTT 59.236 57.895 0.00 0.00 40.92 3.50
1513 3747 2.981350 GTTTTCCGCGGGCTTGGA 60.981 61.111 27.83 0.17 0.00 3.53
1693 3927 0.610174 AGCTGCTGGATTTCGTCTCA 59.390 50.000 0.00 0.00 0.00 3.27
1726 3960 0.384669 AGTCGCACGGGATAAGCTAC 59.615 55.000 0.00 0.00 0.00 3.58
1729 3963 0.039437 CGCACGGGATAAGCTACGAT 60.039 55.000 0.00 0.00 0.00 3.73
1795 4029 4.401022 GGATAAGGGATGACATGATTGCA 58.599 43.478 0.00 0.00 0.00 4.08
1876 4110 5.163141 TGGGTTTAAGGAGTCACATCTTGAA 60.163 40.000 0.00 0.00 35.39 2.69
1921 4155 2.391926 TCTCCCCTATTGGTATGCGA 57.608 50.000 0.00 0.00 0.00 5.10
2014 4248 5.406175 TGATTTTGCTAACAAATTCTGCTGC 59.594 36.000 12.31 0.00 44.96 5.25
2338 4572 1.423584 TGGAGAAGCTGGTTGACTCA 58.576 50.000 0.00 0.00 0.00 3.41
2377 4611 0.828762 AGCAGTTGGCCTTGCATCAA 60.829 50.000 23.13 0.00 46.50 2.57
2378 4612 0.248289 GCAGTTGGCCTTGCATCAAT 59.752 50.000 18.48 0.00 40.02 2.57
2416 4650 4.449131 TGCTAAGGAAAGATCATGCTGAG 58.551 43.478 0.00 0.00 0.00 3.35
2419 4653 1.845143 AGGAAAGATCATGCTGAGGCT 59.155 47.619 0.00 0.00 39.59 4.58
2548 4782 2.424956 TGACTCTGTCATGTCATCTCGG 59.575 50.000 5.13 0.00 37.67 4.63
2608 4842 3.093814 TCTGGACGGTGATAGCAAGTTA 58.906 45.455 0.00 0.00 0.00 2.24
2800 5034 2.955660 CCTTGCTCTAGAGGACTACAGG 59.044 54.545 21.23 16.95 34.91 4.00
2818 5052 1.650912 GGCTGCCTTATGCGATGTG 59.349 57.895 12.43 0.00 45.60 3.21
3052 5286 5.468072 ACTGTACTTCAGACAATCTTTGCTG 59.532 40.000 1.79 0.00 46.27 4.41
3477 5713 3.744942 CCATACAGAGATCATTTGAGGCG 59.255 47.826 0.00 0.00 0.00 5.52
3520 5756 2.957491 AGCTGATTCGAGTCTTGAGG 57.043 50.000 9.50 0.00 0.00 3.86
3608 5844 2.618302 GGAAGGGCCAGGTAAGACTTTC 60.618 54.545 6.18 0.00 36.34 2.62
3645 5881 5.759059 TCAGATCTGCCTGGATAAACATTT 58.241 37.500 18.36 0.00 34.99 2.32
3656 5893 7.214381 CCTGGATAAACATTTCATGCATGATT 58.786 34.615 29.13 21.17 36.56 2.57
3741 5978 7.781548 ACCGTAAATACTTATGTAGCAAAGG 57.218 36.000 0.00 0.00 31.51 3.11
3750 5987 6.786122 ACTTATGTAGCAAAGGAGGGTTTTA 58.214 36.000 0.00 0.00 0.00 1.52
3772 6009 0.887933 CCAGGCTTGCAAATTACGGT 59.112 50.000 0.00 0.00 0.00 4.83
4178 6415 6.825213 TCATGTTTGCAATCATCTTAGCTACT 59.175 34.615 18.05 0.00 0.00 2.57
4196 6433 4.023193 GCTACTTGCCTTTGTTCTTTGCTA 60.023 41.667 0.00 0.00 35.15 3.49
4319 6557 8.759641 CAGACAAGAAGCATCTAACACATATAC 58.240 37.037 0.00 0.00 33.77 1.47
4382 6620 1.683943 ATGTGGATTGCGGGAATCTG 58.316 50.000 19.55 0.00 40.50 2.90
4448 6686 0.177604 CGAGAGCTCATCAAGGCCTT 59.822 55.000 13.78 13.78 0.00 4.35
4538 6776 1.355563 CAGGAGCAATGCATCAGCG 59.644 57.895 8.35 0.68 46.23 5.18
4643 6881 1.047034 ACCCCTACAGATACCGTGCC 61.047 60.000 0.00 0.00 0.00 5.01
4840 7078 3.535561 CAGTTCCTAACATGGGCTAGTG 58.464 50.000 0.00 0.00 0.00 2.74
4891 7129 1.808945 CTCAACCTGATCAGTTGGTGC 59.191 52.381 24.91 0.00 33.89 5.01
5171 7410 2.466186 GGACCCCAACCACCAGGAA 61.466 63.158 0.00 0.00 38.69 3.36
5189 7428 2.877168 GGAAATGCTCGAGCTTCATCAT 59.123 45.455 35.27 18.37 42.66 2.45
5411 7650 1.765904 TCCACTTGTGTCACTTGGCTA 59.234 47.619 4.27 0.00 0.00 3.93
5449 7688 3.028850 AGGCTTCAGCATGCAACAATAT 58.971 40.909 21.98 0.00 44.36 1.28
5450 7689 3.120792 GGCTTCAGCATGCAACAATATG 58.879 45.455 21.98 7.52 44.36 1.78
5479 7730 1.518903 GAAGGCCTGGCTGTTGTGTC 61.519 60.000 19.68 0.00 0.00 3.67
5481 7732 2.203337 GCCTGGCTGTTGTGTCCA 60.203 61.111 12.43 0.00 0.00 4.02
5503 7754 4.710423 TCAGTTTTTGCACTGCTGTAAA 57.290 36.364 1.98 0.00 43.51 2.01
5522 7780 7.918562 GCTGTAAAATCCACTTCTTTTGTGTTA 59.081 33.333 0.00 0.00 33.92 2.41
5523 7781 9.450807 CTGTAAAATCCACTTCTTTTGTGTTAG 57.549 33.333 0.00 0.00 33.92 2.34
5524 7782 8.962679 TGTAAAATCCACTTCTTTTGTGTTAGT 58.037 29.630 0.00 0.00 33.92 2.24
5527 7785 8.747538 AAATCCACTTCTTTTGTGTTAGTACT 57.252 30.769 0.00 0.00 33.92 2.73
5528 7786 8.747538 AATCCACTTCTTTTGTGTTAGTACTT 57.252 30.769 0.00 0.00 33.92 2.24
5542 7800 8.242053 TGTGTTAGTACTTAGTAGTGAATCTGC 58.758 37.037 9.78 0.00 35.78 4.26
5546 7804 4.808414 ACTTAGTAGTGAATCTGCTGCA 57.192 40.909 0.88 0.88 39.36 4.41
5574 7832 4.810491 GCAGTTTGATTTGTCCATTGTGTT 59.190 37.500 0.00 0.00 0.00 3.32
5586 7844 6.453943 TGTCCATTGTGTTACCATTTTCATG 58.546 36.000 0.00 0.00 0.00 3.07
5587 7845 6.041409 TGTCCATTGTGTTACCATTTTCATGT 59.959 34.615 0.00 0.00 0.00 3.21
5601 7859 8.200792 ACCATTTTCATGTTTTGTAAACTGCTA 58.799 29.630 4.19 0.00 28.87 3.49
5627 7885 7.847711 ATAGCACTATTAGTTGATCCTCAGT 57.152 36.000 0.00 0.00 0.00 3.41
5650 7908 7.547019 CAGTCTGCAGATGTAAAGATAGTTCAA 59.453 37.037 21.47 0.00 0.00 2.69
5664 7922 9.516314 AAAGATAGTTCAAGTAGTTGTTTTTGC 57.484 29.630 10.08 0.00 34.98 3.68
5689 7947 4.972568 TGATTAACTATGGTTAGGGCCTGA 59.027 41.667 18.53 4.60 38.86 3.86
5719 7978 8.771521 TGGATATCATTTCTGATTTCATGGTT 57.228 30.769 4.83 0.00 42.23 3.67
5734 7993 7.419711 TTTCATGGTTGGTAAACTGGTAAAA 57.580 32.000 0.00 0.00 36.48 1.52
5735 7994 7.604657 TTCATGGTTGGTAAACTGGTAAAAT 57.395 32.000 0.00 0.00 36.48 1.82
5741 8000 7.013464 TGGTTGGTAAACTGGTAAAATACACTG 59.987 37.037 0.00 0.00 36.48 3.66
5781 8040 4.290711 TGAAGACTGGAATGATCTGCAA 57.709 40.909 0.00 0.00 0.00 4.08
5796 8055 3.325870 TCTGCAAGAGATGTTGTTACCG 58.674 45.455 0.00 0.00 38.67 4.02
5810 8069 3.605634 TGTTACCGCTGCATGTTATTCT 58.394 40.909 0.00 0.00 0.00 2.40
5811 8070 4.006989 TGTTACCGCTGCATGTTATTCTT 58.993 39.130 0.00 0.00 0.00 2.52
5826 8085 7.437713 TGTTATTCTTCTGATGGACAGGTAT 57.562 36.000 0.00 0.00 45.76 2.73
5831 8090 7.496346 TTCTTCTGATGGACAGGTATAGTTT 57.504 36.000 0.00 0.00 45.76 2.66
5832 8091 8.603898 TTCTTCTGATGGACAGGTATAGTTTA 57.396 34.615 0.00 0.00 45.76 2.01
5833 8092 8.783660 TCTTCTGATGGACAGGTATAGTTTAT 57.216 34.615 0.00 0.00 45.76 1.40
5837 8096 9.832445 TCTGATGGACAGGTATAGTTTATTTTC 57.168 33.333 0.00 0.00 45.76 2.29
5861 8129 8.129496 TCCTTGTTAGTGAACATATGTAGTGA 57.871 34.615 9.21 0.00 44.96 3.41
5868 8136 6.341316 AGTGAACATATGTAGTGACCATGAC 58.659 40.000 9.21 0.00 0.00 3.06
5878 8146 5.714806 TGTAGTGACCATGACACTAGATGAA 59.285 40.000 23.13 8.82 46.71 2.57
5887 8155 7.550551 ACCATGACACTAGATGAACTTATGTTG 59.449 37.037 0.00 0.00 36.39 3.33
5888 8156 6.968131 TGACACTAGATGAACTTATGTTGC 57.032 37.500 0.00 0.00 36.39 4.17
5894 8162 7.912250 CACTAGATGAACTTATGTTGCATTTCC 59.088 37.037 0.00 0.00 36.39 3.13
5967 8243 8.413229 GCCATTTATTTGATACAACTGGTATGT 58.587 33.333 0.00 0.00 42.76 2.29
5991 8267 9.151471 TGTCACTCTAATCATAGTTAAAAGCAC 57.849 33.333 0.00 0.00 0.00 4.40
5992 8268 9.372369 GTCACTCTAATCATAGTTAAAAGCACT 57.628 33.333 0.00 0.00 0.00 4.40
5993 8269 9.371136 TCACTCTAATCATAGTTAAAAGCACTG 57.629 33.333 0.00 0.00 0.00 3.66
5994 8270 9.155975 CACTCTAATCATAGTTAAAAGCACTGT 57.844 33.333 0.00 0.00 0.00 3.55
5996 8272 9.979270 CTCTAATCATAGTTAAAAGCACTGTTG 57.021 33.333 0.00 0.00 0.00 3.33
5997 8273 9.719355 TCTAATCATAGTTAAAAGCACTGTTGA 57.281 29.630 0.00 0.00 0.00 3.18
6000 8276 7.744087 TCATAGTTAAAAGCACTGTTGATGT 57.256 32.000 0.00 0.00 0.00 3.06
6002 8278 9.278978 TCATAGTTAAAAGCACTGTTGATGTTA 57.721 29.630 0.00 0.00 0.00 2.41
6006 8282 9.248291 AGTTAAAAGCACTGTTGATGTTATTTG 57.752 29.630 0.00 0.00 0.00 2.32
6007 8283 6.529463 AAAAGCACTGTTGATGTTATTTGC 57.471 33.333 0.00 0.00 0.00 3.68
6010 8286 5.786311 AGCACTGTTGATGTTATTTGCAAT 58.214 33.333 0.00 0.00 0.00 3.56
6012 8288 6.146510 AGCACTGTTGATGTTATTTGCAATTG 59.853 34.615 0.00 0.00 0.00 2.32
6014 8290 7.620600 GCACTGTTGATGTTATTTGCAATTGAG 60.621 37.037 10.34 0.00 0.00 3.02
6015 8291 7.383029 CACTGTTGATGTTATTTGCAATTGAGT 59.617 33.333 10.34 0.00 0.00 3.41
6016 8292 8.575589 ACTGTTGATGTTATTTGCAATTGAGTA 58.424 29.630 10.34 0.00 0.00 2.59
6017 8293 8.741101 TGTTGATGTTATTTGCAATTGAGTAC 57.259 30.769 10.34 0.00 0.00 2.73
6018 8294 8.575589 TGTTGATGTTATTTGCAATTGAGTACT 58.424 29.630 10.34 0.00 0.00 2.73
6021 8297 8.673711 TGATGTTATTTGCAATTGAGTACTACC 58.326 33.333 10.34 0.00 0.00 3.18
6022 8298 8.807948 ATGTTATTTGCAATTGAGTACTACCT 57.192 30.769 10.34 0.00 0.00 3.08
6023 8299 8.263940 TGTTATTTGCAATTGAGTACTACCTC 57.736 34.615 10.34 0.00 0.00 3.85
6024 8300 8.100791 TGTTATTTGCAATTGAGTACTACCTCT 58.899 33.333 10.34 0.00 32.50 3.69
6025 8301 6.992063 ATTTGCAATTGAGTACTACCTCTG 57.008 37.500 10.34 0.00 32.50 3.35
6026 8302 5.483685 TTGCAATTGAGTACTACCTCTGT 57.516 39.130 10.34 0.00 32.50 3.41
6027 8303 6.599356 TTGCAATTGAGTACTACCTCTGTA 57.401 37.500 10.34 0.00 32.50 2.74
6028 8304 6.791867 TGCAATTGAGTACTACCTCTGTAT 57.208 37.500 10.34 0.00 32.50 2.29
6029 8305 6.806751 TGCAATTGAGTACTACCTCTGTATC 58.193 40.000 10.34 0.00 32.50 2.24
6030 8306 6.379988 TGCAATTGAGTACTACCTCTGTATCA 59.620 38.462 10.34 0.00 32.50 2.15
6031 8307 7.093509 TGCAATTGAGTACTACCTCTGTATCAA 60.094 37.037 10.34 0.00 32.50 2.57
6032 8308 7.764443 GCAATTGAGTACTACCTCTGTATCAAA 59.236 37.037 10.34 0.00 32.50 2.69
6033 8309 9.823647 CAATTGAGTACTACCTCTGTATCAAAT 57.176 33.333 0.00 0.00 32.50 2.32
6066 8342 8.715191 ATTTTTGTAGTTCAAATTGAAGTGCA 57.285 26.923 23.79 23.79 45.93 4.57
6071 8347 7.958674 TGTAGTTCAAATTGAAGTGCAAAAAC 58.041 30.769 24.85 15.05 45.10 2.43
6072 8348 7.600375 TGTAGTTCAAATTGAAGTGCAAAAACA 59.400 29.630 24.85 16.96 45.10 2.83
6073 8349 7.614124 AGTTCAAATTGAAGTGCAAAAACAT 57.386 28.000 14.59 0.00 38.51 2.71
6074 8350 7.687445 AGTTCAAATTGAAGTGCAAAAACATC 58.313 30.769 14.59 0.00 38.51 3.06
6075 8351 7.550196 AGTTCAAATTGAAGTGCAAAAACATCT 59.450 29.630 14.59 0.00 38.51 2.90
6076 8352 7.846644 TCAAATTGAAGTGCAAAAACATCTT 57.153 28.000 0.00 0.00 40.48 2.40
6077 8353 8.939201 TCAAATTGAAGTGCAAAAACATCTTA 57.061 26.923 0.00 0.00 40.48 2.10
6078 8354 9.545105 TCAAATTGAAGTGCAAAAACATCTTAT 57.455 25.926 0.00 0.00 40.48 1.73
6086 8362 9.777297 AAGTGCAAAAACATCTTATATTTTGGT 57.223 25.926 10.66 0.00 41.02 3.67
6094 8370 8.996651 AACATCTTATATTTTGGTAAGGAGGG 57.003 34.615 0.00 0.00 0.00 4.30
6095 8371 8.344939 ACATCTTATATTTTGGTAAGGAGGGA 57.655 34.615 0.00 0.00 0.00 4.20
6096 8372 8.218488 ACATCTTATATTTTGGTAAGGAGGGAC 58.782 37.037 0.00 0.00 0.00 4.46
6098 8374 7.802117 TCTTATATTTTGGTAAGGAGGGACTG 58.198 38.462 0.00 0.00 41.55 3.51
6099 8375 7.626084 TCTTATATTTTGGTAAGGAGGGACTGA 59.374 37.037 0.00 0.00 41.55 3.41
6100 8376 4.576330 ATTTTGGTAAGGAGGGACTGAG 57.424 45.455 0.00 0.00 41.55 3.35
6101 8377 1.952621 TTGGTAAGGAGGGACTGAGG 58.047 55.000 0.00 0.00 41.55 3.86
6102 8378 0.042731 TGGTAAGGAGGGACTGAGGG 59.957 60.000 0.00 0.00 41.55 4.30
6113 8389 5.399958 GGAGGGACTGAGGGAGTAATAGTAA 60.400 48.000 0.00 0.00 41.55 2.24
6122 8398 8.354711 TGAGGGAGTAATAGTAAGCTGATATG 57.645 38.462 0.00 0.00 0.00 1.78
6124 8400 8.958060 AGGGAGTAATAGTAAGCTGATATGAA 57.042 34.615 0.00 0.00 0.00 2.57
6126 8402 9.425577 GGGAGTAATAGTAAGCTGATATGAAAC 57.574 37.037 0.00 0.00 0.00 2.78
6167 8450 9.653287 AGTGATGTTATCTAGTTTTCGATTTCA 57.347 29.630 0.00 0.00 0.00 2.69
6179 8462 5.625921 TTTCGATTTCATTGATGACTGCA 57.374 34.783 0.00 0.00 36.36 4.41
6183 8467 6.088173 TCGATTTCATTGATGACTGCAAAAG 58.912 36.000 0.00 0.00 36.36 2.27
6190 8474 2.816087 TGATGACTGCAAAAGGAAGCTC 59.184 45.455 0.00 0.00 0.00 4.09
6203 8487 4.009370 AGGAAGCTCCAGTACAAAAGTC 57.991 45.455 0.00 0.00 39.61 3.01
6204 8488 3.391296 AGGAAGCTCCAGTACAAAAGTCA 59.609 43.478 0.00 0.00 39.61 3.41
6205 8489 4.134563 GGAAGCTCCAGTACAAAAGTCAA 58.865 43.478 0.00 0.00 36.28 3.18
6206 8490 4.578928 GGAAGCTCCAGTACAAAAGTCAAA 59.421 41.667 0.00 0.00 36.28 2.69
6207 8491 5.500645 AAGCTCCAGTACAAAAGTCAAAC 57.499 39.130 0.00 0.00 0.00 2.93
6208 8492 4.523083 AGCTCCAGTACAAAAGTCAAACA 58.477 39.130 0.00 0.00 0.00 2.83
6209 8493 4.576463 AGCTCCAGTACAAAAGTCAAACAG 59.424 41.667 0.00 0.00 0.00 3.16
6221 8505 9.342308 ACAAAAGTCAAACAGATCTAAGAATCA 57.658 29.630 0.00 0.00 0.00 2.57
6226 8510 8.378565 AGTCAAACAGATCTAAGAATCAGGAAA 58.621 33.333 0.00 0.00 0.00 3.13
6229 8513 9.837525 CAAACAGATCTAAGAATCAGGAAAAAG 57.162 33.333 0.00 0.00 0.00 2.27
6238 8522 7.846101 AAGAATCAGGAAAAAGGAAATCTGT 57.154 32.000 0.00 0.00 0.00 3.41
6248 8532 6.890979 AAAAGGAAATCTGTCCAGAAGAAG 57.109 37.500 0.37 0.00 41.36 2.85
6266 8550 5.957771 AGAAGATTACTGGCTTCCATGTA 57.042 39.130 0.00 0.00 41.01 2.29
6270 8554 6.747414 AGATTACTGGCTTCCATGTACATA 57.253 37.500 8.32 0.00 30.82 2.29
6274 8558 8.766994 ATTACTGGCTTCCATGTACATAATTT 57.233 30.769 8.32 0.00 30.82 1.82
6282 8566 6.206395 TCCATGTACATAATTTTGCAGTGG 57.794 37.500 8.32 2.66 0.00 4.00
6305 8591 7.173390 GTGGATGCATTAGGGAACTTAATACTC 59.827 40.741 0.00 0.00 43.67 2.59
6306 8592 7.072454 TGGATGCATTAGGGAACTTAATACTCT 59.928 37.037 0.00 0.00 43.67 3.24
6307 8593 7.389053 GGATGCATTAGGGAACTTAATACTCTG 59.611 40.741 0.00 0.00 43.67 3.35
6317 8603 8.654215 GGGAACTTAATACTCTGTTAAGAAACG 58.346 37.037 11.36 0.00 40.10 3.60
6318 8604 8.167345 GGAACTTAATACTCTGTTAAGAAACGC 58.833 37.037 11.36 0.00 40.10 4.84
6333 8619 1.826385 AACGCTCATGCTTAGCCTTT 58.174 45.000 0.29 0.00 36.60 3.11
6335 8621 2.162681 ACGCTCATGCTTAGCCTTTTT 58.837 42.857 0.29 0.00 36.60 1.94
6342 8628 4.641989 TCATGCTTAGCCTTTTTGAGATCC 59.358 41.667 0.29 0.00 0.00 3.36
6356 8642 9.162764 CTTTTTGAGATCCGGACTCTAAAATTA 57.837 33.333 30.84 20.99 42.70 1.40
6357 8643 9.681062 TTTTTGAGATCCGGACTCTAAAATTAT 57.319 29.630 29.23 8.34 40.77 1.28
6358 8644 8.888579 TTTGAGATCCGGACTCTAAAATTATC 57.111 34.615 24.85 9.58 35.66 1.75
6359 8645 7.841282 TGAGATCCGGACTCTAAAATTATCT 57.159 36.000 24.85 13.50 35.66 1.98
6360 8646 7.661968 TGAGATCCGGACTCTAAAATTATCTG 58.338 38.462 24.85 0.00 35.66 2.90
6361 8647 7.287927 TGAGATCCGGACTCTAAAATTATCTGT 59.712 37.037 24.85 0.00 35.66 3.41
6376 8662 7.886629 AATTATCTGTTAATGTGATGCCACT 57.113 32.000 0.00 0.00 43.55 4.00
6384 8670 7.059788 TGTTAATGTGATGCCACTAATACCAT 58.940 34.615 0.00 0.00 43.55 3.55
6402 8688 8.427902 AATACCATCTAAGCATCTGTATCTCA 57.572 34.615 0.00 0.00 0.00 3.27
6403 8689 6.931790 ACCATCTAAGCATCTGTATCTCAT 57.068 37.500 0.00 0.00 0.00 2.90
6406 8692 5.796424 TCTAAGCATCTGTATCTCATGCA 57.204 39.130 5.95 0.00 40.41 3.96
6412 8698 4.798593 GCATCTGTATCTCATGCAGCAGTA 60.799 45.833 0.00 0.00 41.93 2.74
6430 8716 1.488393 GTATGCTCCAGGAAGCTCCTT 59.512 52.381 10.99 0.00 46.91 3.36
6432 8718 1.077858 GCTCCAGGAAGCTCCTTGG 60.078 63.158 0.00 0.00 46.91 3.61
6433 8719 1.606531 CTCCAGGAAGCTCCTTGGG 59.393 63.158 0.00 2.25 46.91 4.12
6455 8741 3.088532 AGTCCTGACTACTTCTGCAGAG 58.911 50.000 17.43 13.36 40.43 3.35
6472 8758 2.738846 CAGAGTCAAGAATCCGTGTTGG 59.261 50.000 0.00 0.00 40.09 3.77
6480 8766 1.063469 GAATCCGTGTTGGTAATGGCG 59.937 52.381 0.00 0.00 39.52 5.69
6484 8770 1.364721 CGTGTTGGTAATGGCGATGA 58.635 50.000 0.00 0.00 0.00 2.92
6496 8782 4.823276 CGATGAGCTTCTCGCCTT 57.177 55.556 6.02 0.00 40.39 4.35
6497 8783 2.587574 CGATGAGCTTCTCGCCTTC 58.412 57.895 6.02 0.00 40.39 3.46
6499 8785 1.851658 GATGAGCTTCTCGCCTTCTC 58.148 55.000 0.00 0.00 40.39 2.87
6500 8786 0.463620 ATGAGCTTCTCGCCTTCTCC 59.536 55.000 0.00 0.00 40.39 3.71
6501 8787 0.900182 TGAGCTTCTCGCCTTCTCCA 60.900 55.000 0.00 0.00 40.39 3.86
6502 8788 0.459411 GAGCTTCTCGCCTTCTCCAC 60.459 60.000 0.00 0.00 40.39 4.02
6503 8789 1.188219 AGCTTCTCGCCTTCTCCACA 61.188 55.000 0.00 0.00 40.39 4.17
6504 8790 0.739112 GCTTCTCGCCTTCTCCACAG 60.739 60.000 0.00 0.00 0.00 3.66
6505 8791 0.891373 CTTCTCGCCTTCTCCACAGA 59.109 55.000 0.00 0.00 0.00 3.41
6517 8803 6.433093 GCCTTCTCCACAGATTTAAAGGTAAA 59.567 38.462 0.00 0.00 33.76 2.01
6531 8817 8.467963 TTTAAAGGTAAAATTCCGTTCTCCTT 57.532 30.769 0.00 0.00 35.88 3.36
6541 8828 7.519032 AATTCCGTTCTCCTTCATTGTAAAA 57.481 32.000 0.00 0.00 0.00 1.52
6547 8834 7.333423 CCGTTCTCCTTCATTGTAAAATGTCTA 59.667 37.037 5.52 0.00 0.00 2.59
6548 8835 8.383619 CGTTCTCCTTCATTGTAAAATGTCTAG 58.616 37.037 5.52 2.77 0.00 2.43
6573 8860 8.970020 AGGATATGTTTGCTGATCAAAATACAA 58.030 29.630 0.00 0.00 45.35 2.41
6634 8921 8.729756 TGTTATTCTGTGTAATTCAATCTGTGG 58.270 33.333 0.00 0.00 0.00 4.17
6638 8925 5.700832 TCTGTGTAATTCAATCTGTGGTGAC 59.299 40.000 0.00 0.00 0.00 3.67
6644 8931 2.849942 TCAATCTGTGGTGACCTGTTG 58.150 47.619 2.11 1.32 0.00 3.33
6648 8935 2.978010 GTGGTGACCTGTTGCCCG 60.978 66.667 2.11 0.00 0.00 6.13
6649 8936 4.947147 TGGTGACCTGTTGCCCGC 62.947 66.667 2.11 0.00 0.00 6.13
6684 8982 4.339809 CTCACGCACACGCACACG 62.340 66.667 0.00 0.00 45.53 4.49
6733 9041 1.322442 GCAGGACTTGTGCCTTTTCT 58.678 50.000 0.00 0.00 34.67 2.52
6769 9077 4.935205 TCTCACTAACAAATGAACCGGATG 59.065 41.667 9.46 0.00 0.00 3.51
6774 9082 3.235157 ACAAATGAACCGGATGCAATG 57.765 42.857 9.46 9.14 0.00 2.82
6775 9083 2.094078 ACAAATGAACCGGATGCAATGG 60.094 45.455 9.46 0.00 0.00 3.16
6776 9084 0.461135 AATGAACCGGATGCAATGGC 59.539 50.000 9.46 0.00 41.68 4.40
6777 9085 0.396139 ATGAACCGGATGCAATGGCT 60.396 50.000 9.46 0.00 41.91 4.75
6778 9086 0.611618 TGAACCGGATGCAATGGCTT 60.612 50.000 9.46 0.00 41.91 4.35
6779 9087 0.101219 GAACCGGATGCAATGGCTTC 59.899 55.000 9.46 0.00 41.96 3.86
6780 9088 0.611618 AACCGGATGCAATGGCTTCA 60.612 50.000 9.46 0.00 43.85 3.02
6781 9089 0.611618 ACCGGATGCAATGGCTTCAA 60.612 50.000 9.46 0.00 43.85 2.69
6782 9090 0.748450 CCGGATGCAATGGCTTCAAT 59.252 50.000 9.97 0.00 43.85 2.57
6783 9091 1.955778 CCGGATGCAATGGCTTCAATA 59.044 47.619 9.97 0.00 43.85 1.90
6784 9092 2.030540 CCGGATGCAATGGCTTCAATAG 60.031 50.000 9.97 0.00 43.85 1.73
6797 9105 4.222114 GCTTCAATAGCGAATACAATGGC 58.778 43.478 0.00 0.00 40.71 4.40
6798 9106 4.023707 GCTTCAATAGCGAATACAATGGCT 60.024 41.667 0.00 0.00 40.71 4.75
6799 9107 5.422666 TTCAATAGCGAATACAATGGCTG 57.577 39.130 0.00 0.00 36.97 4.85
6800 9108 4.702831 TCAATAGCGAATACAATGGCTGA 58.297 39.130 0.00 0.00 36.97 4.26
6801 9109 5.122519 TCAATAGCGAATACAATGGCTGAA 58.877 37.500 0.00 0.00 36.97 3.02
6802 9110 5.588246 TCAATAGCGAATACAATGGCTGAAA 59.412 36.000 0.00 0.00 36.97 2.69
6803 9111 6.262944 TCAATAGCGAATACAATGGCTGAAAT 59.737 34.615 0.00 0.00 36.97 2.17
6804 9112 7.443879 TCAATAGCGAATACAATGGCTGAAATA 59.556 33.333 0.00 0.00 36.97 1.40
6805 9113 5.679734 AGCGAATACAATGGCTGAAATAG 57.320 39.130 0.00 0.00 33.81 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
153 2087 6.228995 TGAATTTCTCTATCTATGCTGCCAG 58.771 40.000 0.00 0.00 0.00 4.85
160 2094 7.234371 TGGGGAGTCTGAATTTCTCTATCTATG 59.766 40.741 0.00 0.00 0.00 2.23
214 2156 0.468648 GAGAGGGAAATACGGGGGTG 59.531 60.000 0.00 0.00 0.00 4.61
327 2270 3.471806 GAGAAGGGGGTCGGGCTC 61.472 72.222 0.00 0.00 0.00 4.70
337 2280 1.074850 GGGAGGAGAGGGAGAAGGG 60.075 68.421 0.00 0.00 0.00 3.95
340 2283 2.226149 GACGGGGAGGAGAGGGAGAA 62.226 65.000 0.00 0.00 0.00 2.87
684 2892 2.661399 GCTGAGGTGAGCTGAGCA 59.339 61.111 17.85 0.00 35.95 4.26
951 3182 2.585153 GGCCCCGTCTTCTTCCTC 59.415 66.667 0.00 0.00 0.00 3.71
1120 3351 1.519498 TACATCGAGGAGGAGGAGGA 58.481 55.000 3.06 0.00 0.00 3.71
1121 3352 2.235016 CTTACATCGAGGAGGAGGAGG 58.765 57.143 3.06 0.00 0.00 4.30
1122 3353 1.611491 GCTTACATCGAGGAGGAGGAG 59.389 57.143 3.06 0.00 0.00 3.69
1159 3390 2.033801 CGCTGCAAGGAAATTAGGGATG 59.966 50.000 0.00 0.00 0.00 3.51
1160 3391 2.092429 TCGCTGCAAGGAAATTAGGGAT 60.092 45.455 0.00 0.00 0.00 3.85
1161 3392 1.280710 TCGCTGCAAGGAAATTAGGGA 59.719 47.619 0.00 0.00 0.00 4.20
1162 3393 1.672881 CTCGCTGCAAGGAAATTAGGG 59.327 52.381 0.00 0.00 0.00 3.53
1163 3394 1.672881 CCTCGCTGCAAGGAAATTAGG 59.327 52.381 0.00 0.00 35.83 2.69
1164 3395 1.064654 GCCTCGCTGCAAGGAAATTAG 59.935 52.381 11.62 0.00 35.83 1.73
1165 3396 1.094785 GCCTCGCTGCAAGGAAATTA 58.905 50.000 11.62 0.00 35.83 1.40
1166 3397 0.895100 TGCCTCGCTGCAAGGAAATT 60.895 50.000 11.62 0.00 38.56 1.82
1177 3408 1.374758 GCACTTGTACTGCCTCGCT 60.375 57.895 0.00 0.00 0.00 4.93
1179 3410 0.244994 AGAGCACTTGTACTGCCTCG 59.755 55.000 2.20 0.00 35.01 4.63
1180 3411 1.001406 ACAGAGCACTTGTACTGCCTC 59.999 52.381 2.20 0.96 35.01 4.70
1181 3412 1.051812 ACAGAGCACTTGTACTGCCT 58.948 50.000 2.20 0.00 35.01 4.75
1182 3413 1.884235 AACAGAGCACTTGTACTGCC 58.116 50.000 2.20 0.00 35.01 4.85
1183 3414 2.603173 GCAAACAGAGCACTTGTACTGC 60.603 50.000 0.00 0.00 34.25 4.40
1184 3415 2.874701 AGCAAACAGAGCACTTGTACTG 59.125 45.455 0.00 0.00 36.58 2.74
1185 3416 2.874701 CAGCAAACAGAGCACTTGTACT 59.125 45.455 0.00 0.00 0.00 2.73
1186 3417 2.603173 GCAGCAAACAGAGCACTTGTAC 60.603 50.000 0.00 0.00 0.00 2.90
1187 3418 1.603802 GCAGCAAACAGAGCACTTGTA 59.396 47.619 0.00 0.00 0.00 2.41
1188 3419 0.383231 GCAGCAAACAGAGCACTTGT 59.617 50.000 0.00 0.00 0.00 3.16
1191 3422 0.179037 TCAGCAGCAAACAGAGCACT 60.179 50.000 0.00 0.00 0.00 4.40
1249 3480 0.894835 ATTTTGATGTTCACCGCCCC 59.105 50.000 0.00 0.00 0.00 5.80
1324 3558 3.551846 TCCCAAAGACAAGGAAAGACAC 58.448 45.455 0.00 0.00 0.00 3.67
1462 3696 0.601558 GGTACAGGCACGACTTCTCA 59.398 55.000 0.00 0.00 0.00 3.27
1498 3732 3.605749 CTCTCCAAGCCCGCGGAAA 62.606 63.158 30.73 3.70 0.00 3.13
1513 3747 4.749310 CGCGACAGCTTGGCCTCT 62.749 66.667 0.00 0.00 42.32 3.69
1693 3927 2.473760 CGACTCGGCGGAGATCTGT 61.474 63.158 26.25 5.57 43.27 3.41
1726 3960 3.733224 GGAACTCATCAGATTCGTCATCG 59.267 47.826 0.00 0.00 36.93 3.84
1729 3963 3.118992 CCTGGAACTCATCAGATTCGTCA 60.119 47.826 0.00 0.00 33.11 4.35
1795 4029 0.882042 CAAGCTTCCGCCTATCGCAT 60.882 55.000 0.00 0.00 37.30 4.73
1876 4110 3.589988 GTTCCGAGACATGTCAATGACT 58.410 45.455 27.02 5.64 40.77 3.41
1921 4155 3.285484 CAGGCTGAATTTACTGATGGCT 58.715 45.455 9.42 0.00 32.86 4.75
2014 4248 0.324091 AAGCATCCTTGAGGCCCTTG 60.324 55.000 0.00 0.00 40.43 3.61
2044 4278 5.394553 CCTGGAAGAAACAAAAGAAGCAAGT 60.395 40.000 0.00 0.00 34.07 3.16
2203 4437 1.455030 GATCTCTGCTGCTTATTCGCG 59.545 52.381 0.00 0.00 0.00 5.87
2338 4572 4.405036 TGCTTCTGTCTAGAATCTGATGCT 59.595 41.667 19.22 3.15 41.83 3.79
2366 4600 1.365699 CAAGCCAATTGATGCAAGGC 58.634 50.000 7.12 0.00 41.83 4.35
2377 4611 2.034687 AGCCTCACGCAAGCCAAT 59.965 55.556 0.00 0.00 45.62 3.16
2378 4612 2.979676 CAGCCTCACGCAAGCCAA 60.980 61.111 0.00 0.00 45.62 4.52
2419 4653 2.334946 GGCATTGAACAGGCGCTCA 61.335 57.895 7.64 0.00 0.00 4.26
2506 4740 6.939163 AGTCAAGCAAGTTGAGAGAATAATGT 59.061 34.615 7.16 0.00 46.18 2.71
2548 4782 1.379044 CATCCACCCAAGAGGCCAC 60.379 63.158 5.01 0.00 40.58 5.01
2608 4842 7.344352 AGTTCAGTAGCCTTATTGAGATTCTCT 59.656 37.037 14.54 0.00 28.76 3.10
2800 5034 1.650912 CACATCGCATAAGGCAGCC 59.349 57.895 1.84 1.84 45.17 4.85
2890 5124 3.559242 GCTCTACATTCTCCATCACAAGC 59.441 47.826 0.00 0.00 0.00 4.01
3184 5418 5.072872 AGCCATCTACTGAATTAGCATTCCT 59.927 40.000 0.00 0.00 38.50 3.36
3351 5587 2.282603 TGGCTTGCTGCATGCTCA 60.283 55.556 31.02 25.02 45.15 4.26
3360 5596 1.973281 CCGTTCATGGTGGCTTGCT 60.973 57.895 0.00 0.00 0.00 3.91
3369 5605 1.801771 TCGTAAACAAGCCGTTCATGG 59.198 47.619 0.00 0.00 36.59 3.66
3520 5756 1.160329 ACTGTTGCTGAGGTTGACGC 61.160 55.000 0.00 0.00 0.00 5.19
3608 5844 4.441356 GCAGATCTGAGAAAGAGGTGTAGG 60.441 50.000 27.04 0.00 38.67 3.18
3645 5881 4.261867 GCAGCAAATCCTAATCATGCATGA 60.262 41.667 30.47 30.47 41.70 3.07
3656 5893 3.758554 GAGAAACAAGGCAGCAAATCCTA 59.241 43.478 0.00 0.00 31.24 2.94
3750 5987 1.750778 CGTAATTTGCAAGCCTGGGAT 59.249 47.619 0.00 0.00 0.00 3.85
3760 5997 2.577700 AGTTCCACACCGTAATTTGCA 58.422 42.857 0.00 0.00 0.00 4.08
3772 6009 5.975693 AGAAAAGTCAACAAAGTTCCACA 57.024 34.783 0.00 0.00 0.00 4.17
4162 6399 6.094603 ACAAAGGCAAGTAGCTAAGATGATTG 59.905 38.462 0.00 4.84 44.79 2.67
4178 6415 4.340666 TCATGTAGCAAAGAACAAAGGCAA 59.659 37.500 0.00 0.00 0.00 4.52
4225 6462 5.804639 TGGATCTAGCTGTGCTAAAGAAAA 58.195 37.500 0.00 0.00 40.82 2.29
4382 6620 1.509923 GCATTCAGCTGCCAAGTCC 59.490 57.895 9.47 0.00 41.15 3.85
4448 6686 2.291540 CCTAAGGAAATGAACCCTGGCA 60.292 50.000 0.00 0.00 32.12 4.92
4538 6776 5.354792 ACAATACTCAGACCTCTTCTCGTAC 59.645 44.000 0.00 0.00 28.96 3.67
4840 7078 8.931385 AATATGGCAAACAACATTGACTTATC 57.069 30.769 0.00 0.00 37.56 1.75
5096 7335 2.048222 ATGTCACCCACGTGCTCG 60.048 61.111 10.91 6.63 40.04 5.03
5171 7410 2.133553 CGATGATGAAGCTCGAGCATT 58.866 47.619 36.87 26.63 45.16 3.56
5189 7428 0.534203 GTTCTTGGCTGTTCACCCGA 60.534 55.000 0.00 0.00 0.00 5.14
5315 7554 4.965532 ACAATCCTTACAGCCTCACTAGAT 59.034 41.667 0.00 0.00 0.00 1.98
5323 7562 4.164796 TGATGATCACAATCCTTACAGCCT 59.835 41.667 0.00 0.00 0.00 4.58
5396 7635 3.275617 AGTGTTAGCCAAGTGACACAA 57.724 42.857 8.59 0.00 43.56 3.33
5411 7650 2.308866 AGCCTATTGCCCAGTTAGTGTT 59.691 45.455 0.00 0.00 42.71 3.32
5449 7688 1.074775 AGGCCTTCGGTTCAATGCA 59.925 52.632 0.00 0.00 0.00 3.96
5450 7689 1.508088 CAGGCCTTCGGTTCAATGC 59.492 57.895 0.00 0.00 0.00 3.56
5503 7754 8.747538 AAGTACTAACACAAAAGAAGTGGATT 57.252 30.769 0.00 0.00 41.21 3.01
5522 7780 5.419155 TGCAGCAGATTCACTACTAAGTACT 59.581 40.000 0.00 0.00 33.48 2.73
5523 7781 5.651530 TGCAGCAGATTCACTACTAAGTAC 58.348 41.667 0.00 0.00 33.48 2.73
5524 7782 5.914898 TGCAGCAGATTCACTACTAAGTA 57.085 39.130 0.00 0.00 33.48 2.24
5525 7783 4.808414 TGCAGCAGATTCACTACTAAGT 57.192 40.909 0.00 0.00 35.91 2.24
5526 7784 4.931601 TGTTGCAGCAGATTCACTACTAAG 59.068 41.667 0.00 0.00 0.00 2.18
5527 7785 4.893608 TGTTGCAGCAGATTCACTACTAA 58.106 39.130 0.00 0.00 0.00 2.24
5528 7786 4.535526 TGTTGCAGCAGATTCACTACTA 57.464 40.909 0.00 0.00 0.00 1.82
5546 7804 4.669206 TGGACAAATCAAACTGCATGTT 57.331 36.364 0.00 0.00 41.29 2.71
5554 7812 6.276847 TGGTAACACAATGGACAAATCAAAC 58.723 36.000 0.00 0.00 46.17 2.93
5574 7832 8.200792 AGCAGTTTACAAAACATGAAAATGGTA 58.799 29.630 0.00 0.00 35.37 3.25
5627 7885 7.615403 ACTTGAACTATCTTTACATCTGCAGA 58.385 34.615 20.79 20.79 0.00 4.26
5650 7908 7.023197 AGTTAATCACGCAAAAACAACTACT 57.977 32.000 0.00 0.00 0.00 2.57
5664 7922 4.062991 GGCCCTAACCATAGTTAATCACG 58.937 47.826 0.00 0.00 37.99 4.35
5719 7978 6.300703 AGCAGTGTATTTTACCAGTTTACCA 58.699 36.000 0.00 0.00 0.00 3.25
5734 7993 7.453393 ACCATATGCAACTATTAGCAGTGTAT 58.547 34.615 0.00 0.00 44.94 2.29
5735 7994 6.826668 ACCATATGCAACTATTAGCAGTGTA 58.173 36.000 0.00 0.00 44.94 2.90
5741 8000 7.227512 AGTCTTCAACCATATGCAACTATTAGC 59.772 37.037 0.00 0.00 0.00 3.09
5781 8040 1.001974 TGCAGCGGTAACAACATCTCT 59.998 47.619 0.00 0.00 0.00 3.10
5785 8044 1.533625 ACATGCAGCGGTAACAACAT 58.466 45.000 0.00 0.00 0.00 2.71
5788 8047 4.006989 AGAATAACATGCAGCGGTAACAA 58.993 39.130 0.00 0.00 0.00 2.83
5789 8048 3.605634 AGAATAACATGCAGCGGTAACA 58.394 40.909 0.00 0.00 0.00 2.41
5796 8055 4.577693 TCCATCAGAAGAATAACATGCAGC 59.422 41.667 0.00 0.00 0.00 5.25
5811 8070 9.832445 GAAAATAAACTATACCTGTCCATCAGA 57.168 33.333 0.00 0.00 46.27 3.27
5853 8112 5.893824 TCATCTAGTGTCATGGTCACTACAT 59.106 40.000 19.84 15.31 43.17 2.29
5861 8129 7.187824 ACATAAGTTCATCTAGTGTCATGGT 57.812 36.000 0.00 0.00 0.00 3.55
5868 8136 7.912250 GGAAATGCAACATAAGTTCATCTAGTG 59.088 37.037 0.00 0.00 35.28 2.74
5878 8146 6.010219 AGTAACAGGGAAATGCAACATAAGT 58.990 36.000 0.00 0.00 0.00 2.24
5887 8155 5.221441 ACCTTCAAAAGTAACAGGGAAATGC 60.221 40.000 0.00 0.00 0.00 3.56
5888 8156 6.405278 ACCTTCAAAAGTAACAGGGAAATG 57.595 37.500 0.00 0.00 0.00 2.32
5894 8162 4.647424 TGCAACCTTCAAAAGTAACAGG 57.353 40.909 0.00 0.00 0.00 4.00
5967 8243 9.371136 CAGTGCTTTTAACTATGATTAGAGTGA 57.629 33.333 0.00 0.00 0.00 3.41
5991 8267 7.878477 ACTCAATTGCAAATAACATCAACAG 57.122 32.000 1.71 0.00 0.00 3.16
5992 8268 8.575589 AGTACTCAATTGCAAATAACATCAACA 58.424 29.630 1.71 0.00 0.00 3.33
5993 8269 8.970691 AGTACTCAATTGCAAATAACATCAAC 57.029 30.769 1.71 0.00 0.00 3.18
5996 8272 8.893727 AGGTAGTACTCAATTGCAAATAACATC 58.106 33.333 1.71 0.00 0.00 3.06
5997 8273 8.807948 AGGTAGTACTCAATTGCAAATAACAT 57.192 30.769 1.71 0.00 0.00 2.71
5998 8274 8.100791 AGAGGTAGTACTCAATTGCAAATAACA 58.899 33.333 1.71 0.00 39.97 2.41
5999 8275 8.391106 CAGAGGTAGTACTCAATTGCAAATAAC 58.609 37.037 1.71 0.00 39.97 1.89
6000 8276 8.100791 ACAGAGGTAGTACTCAATTGCAAATAA 58.899 33.333 1.71 0.00 39.97 1.40
6002 8278 6.476378 ACAGAGGTAGTACTCAATTGCAAAT 58.524 36.000 1.71 0.00 39.97 2.32
6003 8279 5.865085 ACAGAGGTAGTACTCAATTGCAAA 58.135 37.500 1.71 0.00 39.97 3.68
6006 8282 6.806751 TGATACAGAGGTAGTACTCAATTGC 58.193 40.000 0.00 0.00 39.97 3.56
6007 8283 9.823647 ATTTGATACAGAGGTAGTACTCAATTG 57.176 33.333 0.00 0.00 39.97 2.32
6045 8321 8.439286 GTTTTTGCACTTCAATTTGAACTACAA 58.561 29.630 7.74 9.09 34.12 2.41
6046 8322 7.600375 TGTTTTTGCACTTCAATTTGAACTACA 59.400 29.630 7.74 3.93 34.12 2.74
6047 8323 7.958674 TGTTTTTGCACTTCAATTTGAACTAC 58.041 30.769 7.74 1.54 34.12 2.73
6048 8324 8.715191 ATGTTTTTGCACTTCAATTTGAACTA 57.285 26.923 7.74 0.00 34.12 2.24
6049 8325 7.550196 AGATGTTTTTGCACTTCAATTTGAACT 59.450 29.630 7.74 0.00 34.12 3.01
6050 8326 7.687445 AGATGTTTTTGCACTTCAATTTGAAC 58.313 30.769 7.74 0.13 34.12 3.18
6051 8327 7.846644 AGATGTTTTTGCACTTCAATTTGAA 57.153 28.000 11.19 11.19 34.12 2.69
6052 8328 7.846644 AAGATGTTTTTGCACTTCAATTTGA 57.153 28.000 0.00 0.00 34.12 2.69
6060 8336 9.777297 ACCAAAATATAAGATGTTTTTGCACTT 57.223 25.926 0.00 0.00 37.60 3.16
6068 8344 9.421399 CCCTCCTTACCAAAATATAAGATGTTT 57.579 33.333 0.00 0.00 31.20 2.83
6069 8345 8.787818 TCCCTCCTTACCAAAATATAAGATGTT 58.212 33.333 0.00 0.00 31.20 2.71
6070 8346 8.218488 GTCCCTCCTTACCAAAATATAAGATGT 58.782 37.037 0.00 0.00 31.20 3.06
6071 8347 8.440771 AGTCCCTCCTTACCAAAATATAAGATG 58.559 37.037 0.00 0.00 31.20 2.90
6072 8348 8.440771 CAGTCCCTCCTTACCAAAATATAAGAT 58.559 37.037 0.00 0.00 31.20 2.40
6073 8349 7.626084 TCAGTCCCTCCTTACCAAAATATAAGA 59.374 37.037 0.00 0.00 31.20 2.10
6074 8350 7.802117 TCAGTCCCTCCTTACCAAAATATAAG 58.198 38.462 0.00 0.00 0.00 1.73
6075 8351 7.147373 CCTCAGTCCCTCCTTACCAAAATATAA 60.147 40.741 0.00 0.00 0.00 0.98
6076 8352 6.329197 CCTCAGTCCCTCCTTACCAAAATATA 59.671 42.308 0.00 0.00 0.00 0.86
6077 8353 5.132816 CCTCAGTCCCTCCTTACCAAAATAT 59.867 44.000 0.00 0.00 0.00 1.28
6078 8354 4.473559 CCTCAGTCCCTCCTTACCAAAATA 59.526 45.833 0.00 0.00 0.00 1.40
6079 8355 3.267031 CCTCAGTCCCTCCTTACCAAAAT 59.733 47.826 0.00 0.00 0.00 1.82
6080 8356 2.642807 CCTCAGTCCCTCCTTACCAAAA 59.357 50.000 0.00 0.00 0.00 2.44
6081 8357 2.266279 CCTCAGTCCCTCCTTACCAAA 58.734 52.381 0.00 0.00 0.00 3.28
6082 8358 1.554822 CCCTCAGTCCCTCCTTACCAA 60.555 57.143 0.00 0.00 0.00 3.67
6083 8359 0.042731 CCCTCAGTCCCTCCTTACCA 59.957 60.000 0.00 0.00 0.00 3.25
6084 8360 0.338814 TCCCTCAGTCCCTCCTTACC 59.661 60.000 0.00 0.00 0.00 2.85
6085 8361 1.007359 ACTCCCTCAGTCCCTCCTTAC 59.993 57.143 0.00 0.00 0.00 2.34
6086 8362 1.394532 ACTCCCTCAGTCCCTCCTTA 58.605 55.000 0.00 0.00 0.00 2.69
6087 8363 1.394532 TACTCCCTCAGTCCCTCCTT 58.605 55.000 0.00 0.00 36.43 3.36
6088 8364 1.394532 TTACTCCCTCAGTCCCTCCT 58.605 55.000 0.00 0.00 36.43 3.69
6089 8365 2.480642 ATTACTCCCTCAGTCCCTCC 57.519 55.000 0.00 0.00 36.43 4.30
6090 8366 4.187506 ACTATTACTCCCTCAGTCCCTC 57.812 50.000 0.00 0.00 36.43 4.30
6091 8367 5.707495 CTTACTATTACTCCCTCAGTCCCT 58.293 45.833 0.00 0.00 36.43 4.20
6092 8368 4.281435 GCTTACTATTACTCCCTCAGTCCC 59.719 50.000 0.00 0.00 36.43 4.46
6093 8369 5.010213 CAGCTTACTATTACTCCCTCAGTCC 59.990 48.000 0.00 0.00 36.43 3.85
6094 8370 5.828859 TCAGCTTACTATTACTCCCTCAGTC 59.171 44.000 0.00 0.00 36.43 3.51
6095 8371 5.767670 TCAGCTTACTATTACTCCCTCAGT 58.232 41.667 0.00 0.00 39.41 3.41
6096 8372 6.909550 ATCAGCTTACTATTACTCCCTCAG 57.090 41.667 0.00 0.00 0.00 3.35
6097 8373 8.170730 TCATATCAGCTTACTATTACTCCCTCA 58.829 37.037 0.00 0.00 0.00 3.86
6098 8374 8.582657 TCATATCAGCTTACTATTACTCCCTC 57.417 38.462 0.00 0.00 0.00 4.30
6099 8375 8.958060 TTCATATCAGCTTACTATTACTCCCT 57.042 34.615 0.00 0.00 0.00 4.20
6100 8376 9.425577 GTTTCATATCAGCTTACTATTACTCCC 57.574 37.037 0.00 0.00 0.00 4.30
6101 8377 9.982651 TGTTTCATATCAGCTTACTATTACTCC 57.017 33.333 0.00 0.00 0.00 3.85
6157 8440 5.625921 TGCAGTCATCAATGAAATCGAAA 57.374 34.783 0.00 0.00 38.75 3.46
6165 8448 4.321452 GCTTCCTTTTGCAGTCATCAATGA 60.321 41.667 0.00 0.00 0.00 2.57
6167 8450 3.830755 AGCTTCCTTTTGCAGTCATCAAT 59.169 39.130 0.00 0.00 0.00 2.57
6179 8462 5.201243 ACTTTTGTACTGGAGCTTCCTTTT 58.799 37.500 0.00 0.00 37.46 2.27
6183 8467 3.740115 TGACTTTTGTACTGGAGCTTCC 58.260 45.455 0.00 0.00 36.96 3.46
6190 8474 6.867662 AGATCTGTTTGACTTTTGTACTGG 57.132 37.500 0.00 0.00 0.00 4.00
6203 8487 9.837525 CTTTTTCCTGATTCTTAGATCTGTTTG 57.162 33.333 5.18 0.00 0.00 2.93
6204 8488 9.018582 CCTTTTTCCTGATTCTTAGATCTGTTT 57.981 33.333 5.18 0.00 0.00 2.83
6205 8489 8.386264 TCCTTTTTCCTGATTCTTAGATCTGTT 58.614 33.333 5.18 0.00 0.00 3.16
6206 8490 7.922382 TCCTTTTTCCTGATTCTTAGATCTGT 58.078 34.615 5.18 0.00 0.00 3.41
6207 8491 8.798859 TTCCTTTTTCCTGATTCTTAGATCTG 57.201 34.615 5.18 0.00 0.00 2.90
6208 8492 9.987726 ATTTCCTTTTTCCTGATTCTTAGATCT 57.012 29.630 0.00 0.00 0.00 2.75
6221 8505 5.324832 TCTGGACAGATTTCCTTTTTCCT 57.675 39.130 0.00 0.00 36.51 3.36
6226 8510 6.192970 TCTTCTTCTGGACAGATTTCCTTT 57.807 37.500 2.42 0.00 37.29 3.11
6229 8513 7.279758 CAGTAATCTTCTTCTGGACAGATTTCC 59.720 40.741 2.42 0.00 37.29 3.13
6248 8532 7.986085 ATTATGTACATGGAAGCCAGTAATC 57.014 36.000 18.81 0.00 36.75 1.75
6256 8540 6.254157 CACTGCAAAATTATGTACATGGAAGC 59.746 38.462 18.81 13.95 0.00 3.86
6282 8566 7.934120 ACAGAGTATTAAGTTCCCTAATGCATC 59.066 37.037 0.00 0.00 0.00 3.91
6293 8579 8.923683 AGCGTTTCTTAACAGAGTATTAAGTTC 58.076 33.333 4.83 0.00 39.59 3.01
6305 8591 8.784986 GGCTAAGCATGAGCGTTTCTTAACAG 62.785 46.154 0.00 0.00 46.54 3.16
6306 8592 7.096424 GGCTAAGCATGAGCGTTTCTTAACA 62.096 44.000 0.00 0.00 46.54 2.41
6307 8593 4.728021 GGCTAAGCATGAGCGTTTCTTAAC 60.728 45.833 0.00 0.00 46.54 2.01
6317 8603 3.441572 TCTCAAAAAGGCTAAGCATGAGC 59.558 43.478 0.00 0.00 44.04 4.26
6318 8604 5.221009 GGATCTCAAAAAGGCTAAGCATGAG 60.221 44.000 0.00 8.53 35.35 2.90
6333 8619 8.705594 AGATAATTTTAGAGTCCGGATCTCAAA 58.294 33.333 25.85 21.62 34.73 2.69
6335 8621 7.287927 ACAGATAATTTTAGAGTCCGGATCTCA 59.712 37.037 25.85 12.71 34.73 3.27
6356 8642 7.445402 GGTATTAGTGGCATCACATTAACAGAT 59.555 37.037 0.00 0.00 45.91 2.90
6357 8643 6.765989 GGTATTAGTGGCATCACATTAACAGA 59.234 38.462 0.00 0.00 45.91 3.41
6358 8644 6.542005 TGGTATTAGTGGCATCACATTAACAG 59.458 38.462 0.00 0.00 45.91 3.16
6359 8645 6.418946 TGGTATTAGTGGCATCACATTAACA 58.581 36.000 0.00 0.00 45.91 2.41
6360 8646 6.935741 TGGTATTAGTGGCATCACATTAAC 57.064 37.500 0.00 0.00 45.91 2.01
6361 8647 7.517320 AGATGGTATTAGTGGCATCACATTAA 58.483 34.615 0.00 0.00 45.91 1.40
6365 8651 6.493189 TTAGATGGTATTAGTGGCATCACA 57.507 37.500 0.00 0.00 45.91 3.58
6376 8662 9.533831 TGAGATACAGATGCTTAGATGGTATTA 57.466 33.333 0.00 0.00 0.00 0.98
6384 8670 5.780984 CTGCATGAGATACAGATGCTTAGA 58.219 41.667 0.00 0.00 36.03 2.10
6430 8716 2.808919 CAGAAGTAGTCAGGACTCCCA 58.191 52.381 5.00 0.00 42.54 4.37
6432 8718 2.165437 CTGCAGAAGTAGTCAGGACTCC 59.835 54.545 8.42 0.00 42.54 3.85
6433 8719 3.085533 TCTGCAGAAGTAGTCAGGACTC 58.914 50.000 15.67 0.00 42.54 3.36
6455 8741 4.142687 CCATTACCAACACGGATTCTTGAC 60.143 45.833 0.00 0.00 38.63 3.18
6472 8758 1.789464 CGAGAAGCTCATCGCCATTAC 59.211 52.381 7.49 0.00 40.39 1.89
6489 8775 2.393271 AAATCTGTGGAGAAGGCGAG 57.607 50.000 0.00 0.00 0.00 5.03
6491 8777 3.375299 CCTTTAAATCTGTGGAGAAGGCG 59.625 47.826 0.00 0.00 0.00 5.52
6492 8778 4.336280 ACCTTTAAATCTGTGGAGAAGGC 58.664 43.478 0.00 0.00 0.00 4.35
6493 8779 7.996098 TTTACCTTTAAATCTGTGGAGAAGG 57.004 36.000 0.00 0.00 0.00 3.46
6496 8782 9.020731 GGAATTTTACCTTTAAATCTGTGGAGA 57.979 33.333 0.00 0.00 0.00 3.71
6497 8783 7.968405 CGGAATTTTACCTTTAAATCTGTGGAG 59.032 37.037 0.00 0.00 0.00 3.86
6499 8785 7.599171 ACGGAATTTTACCTTTAAATCTGTGG 58.401 34.615 0.00 0.00 29.95 4.17
6500 8786 9.124807 GAACGGAATTTTACCTTTAAATCTGTG 57.875 33.333 0.00 0.00 30.88 3.66
6501 8787 9.074576 AGAACGGAATTTTACCTTTAAATCTGT 57.925 29.630 0.00 0.00 31.37 3.41
6502 8788 9.556030 GAGAACGGAATTTTACCTTTAAATCTG 57.444 33.333 0.00 0.00 0.00 2.90
6503 8789 8.737175 GGAGAACGGAATTTTACCTTTAAATCT 58.263 33.333 0.00 0.00 0.00 2.40
6504 8790 8.737175 AGGAGAACGGAATTTTACCTTTAAATC 58.263 33.333 0.00 0.00 0.00 2.17
6505 8791 8.645814 AGGAGAACGGAATTTTACCTTTAAAT 57.354 30.769 0.00 0.00 0.00 1.40
6517 8803 7.519032 TTTTACAATGAAGGAGAACGGAATT 57.481 32.000 0.00 0.00 0.00 2.17
6521 8807 6.149474 AGACATTTTACAATGAAGGAGAACGG 59.851 38.462 8.57 0.00 42.35 4.44
6541 8828 7.071069 TGATCAGCAAACATATCCTAGACAT 57.929 36.000 0.00 0.00 0.00 3.06
6547 8834 8.523915 TGTATTTTGATCAGCAAACATATCCT 57.476 30.769 0.00 0.00 45.64 3.24
6548 8835 9.754382 ATTGTATTTTGATCAGCAAACATATCC 57.246 29.630 0.00 0.00 45.64 2.59
6592 8879 9.013229 ACAGAATAACATTGTTCATTTGCTCTA 57.987 29.630 5.07 0.00 31.61 2.43
6596 8883 7.642071 ACACAGAATAACATTGTTCATTTGC 57.358 32.000 5.07 0.00 31.61 3.68
6624 8911 2.849942 CAACAGGTCACCACAGATTGA 58.150 47.619 0.00 0.00 0.00 2.57
6629 8916 1.898574 GGGCAACAGGTCACCACAG 60.899 63.158 0.00 0.00 39.74 3.66
6632 8919 4.947147 GCGGGCAACAGGTCACCA 62.947 66.667 0.00 0.00 39.74 4.17
6684 8982 0.322975 ATCTCCCTCTGTGTGTGTGC 59.677 55.000 0.00 0.00 0.00 4.57
6717 9025 2.576615 ACAGAGAAAAGGCACAAGTCC 58.423 47.619 0.00 0.00 0.00 3.85
6722 9030 4.949856 AGAAAGAAACAGAGAAAAGGCACA 59.050 37.500 0.00 0.00 0.00 4.57
6726 9034 7.281999 AGTGAGAAGAAAGAAACAGAGAAAAGG 59.718 37.037 0.00 0.00 0.00 3.11
6733 9041 8.786826 TTTGTTAGTGAGAAGAAAGAAACAGA 57.213 30.769 0.00 0.00 0.00 3.41
6776 9084 5.237127 TCAGCCATTGTATTCGCTATTGAAG 59.763 40.000 0.00 0.00 0.00 3.02
6777 9085 5.122519 TCAGCCATTGTATTCGCTATTGAA 58.877 37.500 0.00 0.00 0.00 2.69
6778 9086 4.702831 TCAGCCATTGTATTCGCTATTGA 58.297 39.130 0.00 0.00 0.00 2.57
6779 9087 5.422666 TTCAGCCATTGTATTCGCTATTG 57.577 39.130 0.00 0.00 0.00 1.90
6780 9088 6.639632 ATTTCAGCCATTGTATTCGCTATT 57.360 33.333 0.00 0.00 0.00 1.73
6781 9089 6.128172 GCTATTTCAGCCATTGTATTCGCTAT 60.128 38.462 0.00 0.00 45.23 2.97
6782 9090 5.179368 GCTATTTCAGCCATTGTATTCGCTA 59.821 40.000 0.00 0.00 45.23 4.26
6783 9091 4.023707 GCTATTTCAGCCATTGTATTCGCT 60.024 41.667 0.00 0.00 45.23 4.93
6784 9092 4.222114 GCTATTTCAGCCATTGTATTCGC 58.778 43.478 0.00 0.00 45.23 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.