Multiple sequence alignment - TraesCS2A01G588500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G588500 chr2A 100.000 4736 0 0 1 4736 777752948 777757683 0.000000e+00 8746.0
1 TraesCS2A01G588500 chr2A 96.022 4098 69 25 691 4736 197673405 197669350 0.000000e+00 6578.0
2 TraesCS2A01G588500 chr2A 82.299 548 53 30 4201 4736 323523697 323523182 7.280000e-118 435.0
3 TraesCS2A01G588500 chr2A 98.020 202 4 0 3 204 481599878 481600079 7.540000e-93 351.0
4 TraesCS2A01G588500 chr2A 95.283 212 10 0 319 530 434574897 434574686 2.110000e-88 337.0
5 TraesCS2A01G588500 chr2A 93.488 215 13 1 320 534 2855338 2855125 7.650000e-83 318.0
6 TraesCS2A01G588500 chr2A 87.719 285 6 8 4073 4343 27439727 27439458 5.950000e-79 305.0
7 TraesCS2A01G588500 chr2A 84.892 278 13 8 3927 4177 181501518 181501243 2.190000e-63 254.0
8 TraesCS2A01G588500 chr2A 87.560 209 17 3 4144 4343 181500282 181500074 2.850000e-57 233.0
9 TraesCS2A01G588500 chr2A 92.157 153 10 2 3027 3177 748152464 748152312 1.030000e-51 215.0
10 TraesCS2A01G588500 chr2A 95.789 95 2 1 3606 3698 27441040 27440946 8.210000e-33 152.0
11 TraesCS2A01G588500 chr2A 97.143 35 1 0 4040 4074 27439786 27439752 5.120000e-05 60.2
12 TraesCS2A01G588500 chr7B 94.323 1462 50 7 690 2121 408936062 408937520 0.000000e+00 2209.0
13 TraesCS2A01G588500 chr7B 94.048 1445 50 5 712 2121 408929771 408931214 0.000000e+00 2159.0
14 TraesCS2A01G588500 chr7B 96.096 333 13 0 3173 3505 636629492 636629160 1.160000e-150 544.0
15 TraesCS2A01G588500 chr7B 84.946 372 32 14 688 1051 52617910 52618265 5.830000e-94 355.0
16 TraesCS2A01G588500 chr7B 94.776 134 7 0 2947 3080 636629648 636629515 4.800000e-50 209.0
17 TraesCS2A01G588500 chr5A 94.025 1456 56 6 691 2121 216670943 216669494 0.000000e+00 2178.0
18 TraesCS2A01G588500 chr5A 98.312 237 3 1 2709 2944 308142816 308143052 9.480000e-112 414.0
19 TraesCS2A01G588500 chr5A 96.266 241 8 1 2709 2948 216668326 216668086 1.240000e-105 394.0
20 TraesCS2A01G588500 chr5A 98.039 204 4 0 1 204 695372183 695372386 5.830000e-94 355.0
21 TraesCS2A01G588500 chr5A 98.020 202 4 0 1 202 695347610 695347811 7.540000e-93 351.0
22 TraesCS2A01G588500 chr5A 97.449 196 5 0 2510 2705 216668568 216668373 7.590000e-88 335.0
23 TraesCS2A01G588500 chr5A 94.286 210 11 1 322 531 667477474 667477682 2.130000e-83 320.0
24 TraesCS2A01G588500 chr5A 95.918 196 7 1 2510 2705 308142575 308142769 2.750000e-82 316.0
25 TraesCS2A01G588500 chr5A 96.914 162 5 0 3237 3398 509964243 509964404 6.040000e-69 272.0
26 TraesCS2A01G588500 chr5A 93.151 73 5 0 3976 4048 473959016 473958944 1.800000e-19 108.0
27 TraesCS2A01G588500 chr5A 100.000 33 0 0 3470 3502 509964408 509964440 1.420000e-05 62.1
28 TraesCS2A01G588500 chr3B 94.019 1438 70 11 692 2121 778242546 778243975 0.000000e+00 2165.0
29 TraesCS2A01G588500 chr3B 93.392 1468 59 7 691 2121 490331457 490332923 0.000000e+00 2139.0
30 TraesCS2A01G588500 chr3B 87.934 605 39 10 4151 4736 457211501 457210912 0.000000e+00 682.0
31 TraesCS2A01G588500 chr3B 97.727 352 8 0 1770 2121 68462571 68462220 1.460000e-169 606.0
32 TraesCS2A01G588500 chr3B 81.535 417 40 19 4073 4476 309518868 309519260 4.600000e-80 309.0
33 TraesCS2A01G588500 chr3B 96.226 53 1 1 3494 3546 152222140 152222089 8.440000e-13 86.1
34 TraesCS2A01G588500 chr3B 96.226 53 1 1 3494 3546 804983680 804983731 8.440000e-13 86.1
35 TraesCS2A01G588500 chr2D 93.849 1447 67 14 689 2121 352982541 352981103 0.000000e+00 2159.0
36 TraesCS2A01G588500 chr2D 86.627 501 27 7 4240 4736 233435580 233436044 7.030000e-143 518.0
37 TraesCS2A01G588500 chr2D 82.633 547 52 28 4201 4736 477432410 477432924 1.210000e-120 444.0
38 TraesCS2A01G588500 chr2D 97.222 108 2 1 586 692 108913595 108913702 1.050000e-41 182.0
39 TraesCS2A01G588500 chr2D 89.764 127 12 1 3027 3152 352977989 352977863 1.360000e-35 161.0
40 TraesCS2A01G588500 chr2D 96.226 53 1 1 3494 3546 563474264 563474213 8.440000e-13 86.1
41 TraesCS2A01G588500 chr2D 81.188 101 13 6 688 785 499027594 499027497 5.080000e-10 76.8
42 TraesCS2A01G588500 chr2D 80.220 91 14 4 684 773 580786245 580786332 1.100000e-06 65.8
43 TraesCS2A01G588500 chr7A 93.004 1458 68 7 691 2121 576353150 576351700 0.000000e+00 2097.0
44 TraesCS2A01G588500 chr7A 85.626 647 56 11 4100 4736 475841593 475842212 0.000000e+00 645.0
45 TraesCS2A01G588500 chr7A 91.807 476 16 1 1669 2121 576320127 576319652 4.000000e-180 641.0
46 TraesCS2A01G588500 chr7A 98.039 204 4 0 1 204 90677309 90677512 5.830000e-94 355.0
47 TraesCS2A01G588500 chr7A 98.039 204 4 0 1 204 477459233 477459030 5.830000e-94 355.0
48 TraesCS2A01G588500 chr7A 95.775 213 8 1 319 531 91513633 91513422 4.540000e-90 342.0
49 TraesCS2A01G588500 chr7A 92.672 232 15 2 3032 3261 733097490 733097721 2.730000e-87 333.0
50 TraesCS2A01G588500 chr7A 96.939 196 6 0 2510 2705 576350783 576350588 3.530000e-86 329.0
51 TraesCS2A01G588500 chr7A 96.429 196 7 0 2510 2705 576318733 576318538 1.640000e-84 324.0
52 TraesCS2A01G588500 chr7A 95.890 73 2 1 2947 3019 475840059 475840130 2.990000e-22 117.0
53 TraesCS2A01G588500 chr7A 89.394 66 6 1 3602 3666 625679478 625679413 1.090000e-11 82.4
54 TraesCS2A01G588500 chr7A 100.000 33 0 0 3470 3502 475840302 475840334 1.420000e-05 62.1
55 TraesCS2A01G588500 chrUn 94.602 1093 51 3 686 1776 214932106 214931020 0.000000e+00 1685.0
56 TraesCS2A01G588500 chrUn 94.511 1093 52 3 686 1776 379540259 379541345 0.000000e+00 1679.0
57 TraesCS2A01G588500 chrUn 91.807 476 16 1 1669 2121 387670229 387670704 4.000000e-180 641.0
58 TraesCS2A01G588500 chrUn 96.939 196 6 0 2510 2705 445370601 445370796 3.530000e-86 329.0
59 TraesCS2A01G588500 chrUn 96.226 53 1 1 3494 3546 1814279 1814228 8.440000e-13 86.1
60 TraesCS2A01G588500 chrUn 96.226 53 1 1 3494 3546 320317823 320317874 8.440000e-13 86.1
61 TraesCS2A01G588500 chrUn 100.000 31 0 0 689 719 318763054 318763024 1.840000e-04 58.4
62 TraesCS2A01G588500 chrUn 100.000 31 0 0 689 719 319096471 319096441 1.840000e-04 58.4
63 TraesCS2A01G588500 chrUn 100.000 31 0 0 689 719 333283833 333283863 1.840000e-04 58.4
64 TraesCS2A01G588500 chrUn 100.000 31 0 0 689 719 333300483 333300513 1.840000e-04 58.4
65 TraesCS2A01G588500 chrUn 100.000 31 0 0 689 719 462359396 462359426 1.840000e-04 58.4
66 TraesCS2A01G588500 chrUn 77.451 102 17 6 687 785 1816439 1816341 6.620000e-04 56.5
67 TraesCS2A01G588500 chr1A 93.121 1003 33 3 3770 4736 564325376 564324374 0.000000e+00 1437.0
68 TraesCS2A01G588500 chr1A 99.020 204 2 0 1 204 83959666 83959463 2.690000e-97 366.0
69 TraesCS2A01G588500 chr1A 98.039 204 4 0 1 204 357827874 357828077 5.830000e-94 355.0
70 TraesCS2A01G588500 chr1A 97.549 204 5 0 1 204 233638775 233638978 2.710000e-92 350.0
71 TraesCS2A01G588500 chr1A 92.694 219 14 2 313 530 554036740 554036523 9.890000e-82 315.0
72 TraesCS2A01G588500 chr6B 91.733 1004 31 12 3770 4736 14719528 14718540 0.000000e+00 1347.0
73 TraesCS2A01G588500 chr6B 87.769 605 33 8 4153 4736 429706976 429707560 0.000000e+00 669.0
74 TraesCS2A01G588500 chr6B 94.595 74 3 1 3976 4048 429706888 429706961 3.870000e-21 113.0
75 TraesCS2A01G588500 chr6B 96.226 53 1 1 3494 3546 245241992 245242043 8.440000e-13 86.1
76 TraesCS2A01G588500 chr6B 75.688 218 25 23 690 891 245239751 245239956 3.040000e-12 84.2
77 TraesCS2A01G588500 chr6D 88.970 689 27 9 4073 4736 473369685 473369021 0.000000e+00 806.0
78 TraesCS2A01G588500 chr6D 93.375 483 12 2 2947 3429 473371048 473370586 0.000000e+00 697.0
79 TraesCS2A01G588500 chr6D 98.291 234 3 1 2709 2941 419595658 419595425 4.410000e-110 409.0
80 TraesCS2A01G588500 chr6D 98.291 234 3 1 2709 2941 427933562 427933329 4.410000e-110 409.0
81 TraesCS2A01G588500 chr6D 97.863 234 4 1 2709 2941 427609201 427608968 2.050000e-108 403.0
82 TraesCS2A01G588500 chr6D 82.203 118 6 5 576 692 470374028 470373925 2.350000e-13 87.9
83 TraesCS2A01G588500 chr6D 97.674 43 1 0 3437 3479 473370599 473370557 1.830000e-09 75.0
84 TraesCS2A01G588500 chr6D 79.245 106 15 7 691 792 427936477 427936375 3.060000e-07 67.6
85 TraesCS2A01G588500 chr6D 79.592 98 14 6 691 785 419598603 419598509 1.100000e-06 65.8
86 TraesCS2A01G588500 chr6D 100.000 32 0 0 690 721 76076738 76076769 5.120000e-05 60.2
87 TraesCS2A01G588500 chr6D 78.571 98 15 6 691 785 427612051 427611957 5.120000e-05 60.2
88 TraesCS2A01G588500 chr2B 89.256 605 30 20 4151 4736 10605743 10605155 0.000000e+00 725.0
89 TraesCS2A01G588500 chr2B 95.783 332 14 0 3174 3505 39748364 39748033 1.940000e-148 536.0
90 TraesCS2A01G588500 chr2B 95.736 258 11 0 3174 3431 174388298 174388555 2.640000e-112 416.0
91 TraesCS2A01G588500 chr2B 94.776 134 7 0 2947 3080 39748535 39748402 4.800000e-50 209.0
92 TraesCS2A01G588500 chr2B 94.776 134 7 0 2947 3080 174388127 174388260 4.800000e-50 209.0
93 TraesCS2A01G588500 chr2B 94.595 74 3 1 3976 4048 10605829 10605756 3.870000e-21 113.0
94 TraesCS2A01G588500 chr7D 86.891 595 26 12 4151 4736 412187028 412187579 1.870000e-173 619.0
95 TraesCS2A01G588500 chr7D 88.630 387 29 12 2128 2507 502877274 502877652 1.550000e-124 457.0
96 TraesCS2A01G588500 chr7D 96.992 266 8 0 3237 3502 412185186 412185451 9.350000e-122 448.0
97 TraesCS2A01G588500 chr7D 97.516 161 4 0 531 691 43240995 43240835 4.670000e-70 276.0
98 TraesCS2A01G588500 chr7D 95.890 73 3 0 2947 3019 412185107 412185179 8.330000e-23 119.0
99 TraesCS2A01G588500 chr7D 94.595 74 3 1 3976 4048 412186924 412186997 3.870000e-21 113.0
100 TraesCS2A01G588500 chr7D 90.909 44 4 0 688 731 227545228 227545271 5.120000e-05 60.2
101 TraesCS2A01G588500 chr5B 95.783 332 14 0 3174 3505 112256048 112255717 1.940000e-148 536.0
102 TraesCS2A01G588500 chr5B 97.368 38 1 0 2947 2984 641791344 641791381 1.100000e-06 65.8
103 TraesCS2A01G588500 chr3A 83.636 495 54 15 4243 4736 744479872 744479404 1.560000e-119 440.0
104 TraesCS2A01G588500 chr3A 96.296 243 8 1 2709 2950 399610505 399610263 9.550000e-107 398.0
105 TraesCS2A01G588500 chr3A 93.191 235 15 1 3027 3261 70664561 70664328 1.260000e-90 344.0
106 TraesCS2A01G588500 chr3A 95.918 196 7 1 2510 2705 399610746 399610552 2.750000e-82 316.0
107 TraesCS2A01G588500 chr3A 95.408 196 8 1 2510 2705 403984234 403984040 1.280000e-80 311.0
108 TraesCS2A01G588500 chr3A 90.850 153 12 2 3027 3177 434832221 434832373 2.230000e-48 204.0
109 TraesCS2A01G588500 chr6A 97.119 243 6 1 2709 2950 121648461 121648219 4.410000e-110 409.0
110 TraesCS2A01G588500 chr6A 95.735 211 9 0 320 530 20905965 20905755 1.630000e-89 340.0
111 TraesCS2A01G588500 chr6A 95.918 196 7 1 2510 2705 121648702 121648508 2.750000e-82 316.0
112 TraesCS2A01G588500 chr6A 93.427 213 14 0 320 532 384090073 384090285 2.750000e-82 316.0
113 TraesCS2A01G588500 chr6A 93.839 211 12 1 320 530 571828176 571827967 2.750000e-82 316.0
114 TraesCS2A01G588500 chr6A 95.122 123 4 2 3578 3698 210944711 210944833 4.840000e-45 193.0
115 TraesCS2A01G588500 chr3D 81.204 548 57 25 4201 4736 382034634 382034121 2.660000e-107 399.0
116 TraesCS2A01G588500 chr5D 97.046 237 6 1 2709 2944 214066748 214066984 9.550000e-107 398.0
117 TraesCS2A01G588500 chr5D 88.110 328 24 9 4193 4514 54831611 54831929 4.470000e-100 375.0
118 TraesCS2A01G588500 chr5D 90.850 153 12 2 3027 3177 80895677 80895525 2.230000e-48 204.0
119 TraesCS2A01G588500 chr4A 98.039 204 4 0 1 204 57949194 57948991 5.830000e-94 355.0
120 TraesCS2A01G588500 chr4A 96.698 212 7 0 319 530 620449012 620449223 2.100000e-93 353.0
121 TraesCS2A01G588500 chr4A 92.105 152 10 2 3027 3176 462048756 462048605 3.710000e-51 213.0
122 TraesCS2A01G588500 chr1B 96.209 211 8 0 3174 3384 322470627 322470417 3.510000e-91 346.0
123 TraesCS2A01G588500 chr1B 95.652 138 6 0 3368 3505 322467119 322466982 6.170000e-54 222.0
124 TraesCS2A01G588500 chr1B 94.776 134 7 0 2947 3080 322470798 322470665 4.800000e-50 209.0
125 TraesCS2A01G588500 chr1B 94.444 72 3 1 3978 4048 610358448 610358377 5.010000e-20 110.0
126 TraesCS2A01G588500 chr1D 94.175 103 2 3 3606 3704 460312869 460312767 2.280000e-33 154.0
127 TraesCS2A01G588500 chr1D 85.345 116 13 3 3767 3882 424988364 424988475 2.990000e-22 117.0
128 TraesCS2A01G588500 chr1D 93.023 43 1 2 690 731 12002742 12002783 1.420000e-05 62.1
129 TraesCS2A01G588500 chr4D 97.959 49 1 0 3498 3546 468186958 468186910 8.440000e-13 86.1
130 TraesCS2A01G588500 chr4D 96.226 53 1 1 3494 3546 468196919 468196868 8.440000e-13 86.1
131 TraesCS2A01G588500 chr4D 80.000 100 13 7 691 785 251532322 251532419 3.060000e-07 67.6
132 TraesCS2A01G588500 chr4B 80.851 94 12 5 684 773 624390101 624390010 8.500000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G588500 chr2A 777752948 777757683 4735 False 8746.00 8746 100.000000 1 4736 1 chr2A.!!$F2 4735
1 TraesCS2A01G588500 chr2A 197669350 197673405 4055 True 6578.00 6578 96.022000 691 4736 1 chr2A.!!$R2 4045
2 TraesCS2A01G588500 chr2A 323523182 323523697 515 True 435.00 435 82.299000 4201 4736 1 chr2A.!!$R3 535
3 TraesCS2A01G588500 chr2A 181500074 181501518 1444 True 243.50 254 86.226000 3927 4343 2 chr2A.!!$R7 416
4 TraesCS2A01G588500 chr7B 408936062 408937520 1458 False 2209.00 2209 94.323000 690 2121 1 chr7B.!!$F3 1431
5 TraesCS2A01G588500 chr7B 408929771 408931214 1443 False 2159.00 2159 94.048000 712 2121 1 chr7B.!!$F2 1409
6 TraesCS2A01G588500 chr5A 216668086 216670943 2857 True 969.00 2178 95.913333 691 2948 3 chr5A.!!$R2 2257
7 TraesCS2A01G588500 chr3B 778242546 778243975 1429 False 2165.00 2165 94.019000 692 2121 1 chr3B.!!$F3 1429
8 TraesCS2A01G588500 chr3B 490331457 490332923 1466 False 2139.00 2139 93.392000 691 2121 1 chr3B.!!$F2 1430
9 TraesCS2A01G588500 chr3B 457210912 457211501 589 True 682.00 682 87.934000 4151 4736 1 chr3B.!!$R3 585
10 TraesCS2A01G588500 chr2D 352977863 352982541 4678 True 1160.00 2159 91.806500 689 3152 2 chr2D.!!$R3 2463
11 TraesCS2A01G588500 chr2D 477432410 477432924 514 False 444.00 444 82.633000 4201 4736 1 chr2D.!!$F3 535
12 TraesCS2A01G588500 chr7A 576350588 576353150 2562 True 1213.00 2097 94.971500 691 2705 2 chr7A.!!$R5 2014
13 TraesCS2A01G588500 chr7A 576318538 576320127 1589 True 482.50 641 94.118000 1669 2705 2 chr7A.!!$R4 1036
14 TraesCS2A01G588500 chr7A 475840059 475842212 2153 False 274.70 645 93.838667 2947 4736 3 chr7A.!!$F3 1789
15 TraesCS2A01G588500 chrUn 214931020 214932106 1086 True 1685.00 1685 94.602000 686 1776 1 chrUn.!!$R1 1090
16 TraesCS2A01G588500 chrUn 379540259 379541345 1086 False 1679.00 1679 94.511000 686 1776 1 chrUn.!!$F4 1090
17 TraesCS2A01G588500 chr1A 564324374 564325376 1002 True 1437.00 1437 93.121000 3770 4736 1 chr1A.!!$R3 966
18 TraesCS2A01G588500 chr6B 14718540 14719528 988 True 1347.00 1347 91.733000 3770 4736 1 chr6B.!!$R1 966
19 TraesCS2A01G588500 chr6B 429706888 429707560 672 False 391.00 669 91.182000 3976 4736 2 chr6B.!!$F2 760
20 TraesCS2A01G588500 chr6D 473369021 473371048 2027 True 526.00 806 93.339667 2947 4736 3 chr6D.!!$R5 1789
21 TraesCS2A01G588500 chr6D 427933329 427936477 3148 True 238.30 409 88.768000 691 2941 2 chr6D.!!$R4 2250
22 TraesCS2A01G588500 chr6D 419595425 419598603 3178 True 237.40 409 88.941500 691 2941 2 chr6D.!!$R2 2250
23 TraesCS2A01G588500 chr6D 427608968 427612051 3083 True 231.60 403 88.217000 691 2941 2 chr6D.!!$R3 2250
24 TraesCS2A01G588500 chr2B 10605155 10605829 674 True 419.00 725 91.925500 3976 4736 2 chr2B.!!$R1 760
25 TraesCS2A01G588500 chr2B 39748033 39748535 502 True 372.50 536 95.279500 2947 3505 2 chr2B.!!$R2 558
26 TraesCS2A01G588500 chr7D 412185107 412187579 2472 False 324.75 619 93.592000 2947 4736 4 chr7D.!!$F3 1789
27 TraesCS2A01G588500 chr3D 382034121 382034634 513 True 399.00 399 81.204000 4201 4736 1 chr3D.!!$R1 535
28 TraesCS2A01G588500 chr1B 322466982 322470798 3816 True 259.00 346 95.545667 2947 3505 3 chr1B.!!$R2 558

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
250 251 0.034337 TCCTTACAGGGCGACAACAC 59.966 55.000 0.00 0.0 35.59 3.32 F
566 567 0.036388 TGCATCCCCACGAAGAAGTC 60.036 55.000 0.00 0.0 0.00 3.01 F
604 605 0.331616 AGCGGCCACTTCCCTAAATT 59.668 50.000 2.24 0.0 0.00 1.82 F
614 615 0.391927 TCCCTAAATTGGTGGCGACG 60.392 55.000 0.00 0.0 0.00 5.12 F
1600 2578 1.117749 TCCTCCTCATGCTCATCGGG 61.118 60.000 0.00 0.0 0.00 5.14 F
2541 4833 1.303561 GGACATGACTGCAGCCCAA 60.304 57.895 15.27 0.0 0.00 4.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1540 2518 1.209019 AGACCTGCAGAGCCACAATAG 59.791 52.381 17.39 0.0 0.00 1.73 R
1921 2922 1.596954 CCACGCTCACCAAGAAAAACG 60.597 52.381 0.00 0.0 0.00 3.60 R
1935 2936 1.733526 GCTGTTCCAAAACCACGCT 59.266 52.632 0.00 0.0 34.28 5.07 R
2429 4505 5.304101 TGTTGACTTGATGCCTAACCAAAAT 59.696 36.000 0.00 0.0 0.00 1.82 R
3261 8342 6.125029 ACAGCTACTCTGCATATTTTCCAAT 58.875 36.000 0.00 0.0 46.76 3.16 R
4003 14417 4.686191 TTGTGCATGGTTCTTTCCAAAT 57.314 36.364 0.00 0.0 41.09 2.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.642154 TTTCGCCACCAAGGTAGAAA 57.358 45.000 10.58 10.58 40.89 2.52
20 21 2.178912 TTCGCCACCAAGGTAGAAAG 57.821 50.000 0.00 0.00 40.61 2.62
21 22 0.323629 TCGCCACCAAGGTAGAAAGG 59.676 55.000 0.00 0.00 40.61 3.11
22 23 0.323629 CGCCACCAAGGTAGAAAGGA 59.676 55.000 0.00 0.00 40.61 3.36
23 24 1.271163 CGCCACCAAGGTAGAAAGGAA 60.271 52.381 0.00 0.00 40.61 3.36
24 25 2.160205 GCCACCAAGGTAGAAAGGAAC 58.840 52.381 0.00 0.00 40.61 3.62
25 26 2.791655 CCACCAAGGTAGAAAGGAACC 58.208 52.381 0.00 0.00 35.91 3.62
26 27 2.554564 CCACCAAGGTAGAAAGGAACCC 60.555 54.545 0.00 0.00 36.34 4.11
27 28 1.350019 ACCAAGGTAGAAAGGAACCCG 59.650 52.381 0.00 0.00 36.34 5.28
28 29 1.350019 CCAAGGTAGAAAGGAACCCGT 59.650 52.381 0.00 0.00 36.34 5.28
29 30 2.423577 CAAGGTAGAAAGGAACCCGTG 58.576 52.381 0.00 0.00 36.34 4.94
30 31 2.019807 AGGTAGAAAGGAACCCGTGA 57.980 50.000 0.00 0.00 36.34 4.35
31 32 1.900486 AGGTAGAAAGGAACCCGTGAG 59.100 52.381 0.00 0.00 36.34 3.51
44 45 2.819667 CGTGAGGAGCAGTGTGAAG 58.180 57.895 0.00 0.00 0.00 3.02
45 46 0.668706 CGTGAGGAGCAGTGTGAAGG 60.669 60.000 0.00 0.00 0.00 3.46
46 47 0.394565 GTGAGGAGCAGTGTGAAGGT 59.605 55.000 0.00 0.00 0.00 3.50
47 48 1.131638 TGAGGAGCAGTGTGAAGGTT 58.868 50.000 0.00 0.00 0.00 3.50
48 49 2.037251 GTGAGGAGCAGTGTGAAGGTTA 59.963 50.000 0.00 0.00 0.00 2.85
49 50 2.703536 TGAGGAGCAGTGTGAAGGTTAA 59.296 45.455 0.00 0.00 0.00 2.01
50 51 3.244215 TGAGGAGCAGTGTGAAGGTTAAG 60.244 47.826 0.00 0.00 0.00 1.85
51 52 2.706190 AGGAGCAGTGTGAAGGTTAAGT 59.294 45.455 0.00 0.00 0.00 2.24
52 53 3.136626 AGGAGCAGTGTGAAGGTTAAGTT 59.863 43.478 0.00 0.00 0.00 2.66
53 54 3.883489 GGAGCAGTGTGAAGGTTAAGTTT 59.117 43.478 0.00 0.00 0.00 2.66
54 55 5.061179 GGAGCAGTGTGAAGGTTAAGTTTA 58.939 41.667 0.00 0.00 0.00 2.01
55 56 5.049612 GGAGCAGTGTGAAGGTTAAGTTTAC 60.050 44.000 0.00 0.00 0.00 2.01
56 57 5.433526 AGCAGTGTGAAGGTTAAGTTTACA 58.566 37.500 0.00 0.00 0.00 2.41
57 58 6.062095 AGCAGTGTGAAGGTTAAGTTTACAT 58.938 36.000 0.00 0.00 0.00 2.29
58 59 7.221450 AGCAGTGTGAAGGTTAAGTTTACATA 58.779 34.615 0.00 0.00 0.00 2.29
59 60 7.717875 AGCAGTGTGAAGGTTAAGTTTACATAA 59.282 33.333 0.00 0.00 0.00 1.90
60 61 8.512138 GCAGTGTGAAGGTTAAGTTTACATAAT 58.488 33.333 0.00 0.00 0.00 1.28
63 64 9.836076 GTGTGAAGGTTAAGTTTACATAATTCC 57.164 33.333 0.00 0.00 0.00 3.01
64 65 9.802039 TGTGAAGGTTAAGTTTACATAATTCCT 57.198 29.630 0.00 0.00 0.00 3.36
69 70 9.408648 AGGTTAAGTTTACATAATTCCTCATGG 57.591 33.333 0.00 0.00 0.00 3.66
70 71 9.403583 GGTTAAGTTTACATAATTCCTCATGGA 57.596 33.333 0.00 0.00 41.36 3.41
74 75 8.970859 AGTTTACATAATTCCTCATGGAGAAG 57.029 34.615 0.00 0.00 44.24 2.85
75 76 8.552296 AGTTTACATAATTCCTCATGGAGAAGT 58.448 33.333 0.00 0.00 44.24 3.01
76 77 8.616076 GTTTACATAATTCCTCATGGAGAAGTG 58.384 37.037 8.29 7.44 44.24 3.16
77 78 5.688807 ACATAATTCCTCATGGAGAAGTGG 58.311 41.667 8.29 4.45 44.24 4.00
78 79 5.192522 ACATAATTCCTCATGGAGAAGTGGT 59.807 40.000 8.29 4.91 44.24 4.16
79 80 4.664688 AATTCCTCATGGAGAAGTGGTT 57.335 40.909 0.00 0.00 44.24 3.67
80 81 3.423539 TTCCTCATGGAGAAGTGGTTG 57.576 47.619 0.00 0.00 44.24 3.77
81 82 1.630369 TCCTCATGGAGAAGTGGTTGG 59.370 52.381 0.00 0.00 37.46 3.77
82 83 1.457346 CTCATGGAGAAGTGGTTGGC 58.543 55.000 0.00 0.00 0.00 4.52
83 84 0.038166 TCATGGAGAAGTGGTTGGCC 59.962 55.000 0.00 0.00 0.00 5.36
84 85 0.967380 CATGGAGAAGTGGTTGGCCC 60.967 60.000 0.00 0.00 0.00 5.80
85 86 1.142688 ATGGAGAAGTGGTTGGCCCT 61.143 55.000 0.00 0.00 0.00 5.19
86 87 1.303643 GGAGAAGTGGTTGGCCCTG 60.304 63.158 0.00 0.00 0.00 4.45
87 88 1.973812 GAGAAGTGGTTGGCCCTGC 60.974 63.158 0.00 0.00 0.00 4.85
88 89 2.116125 GAAGTGGTTGGCCCTGCT 59.884 61.111 0.00 0.00 0.00 4.24
89 90 2.203538 AAGTGGTTGGCCCTGCTG 60.204 61.111 0.00 0.00 0.00 4.41
90 91 4.982701 AGTGGTTGGCCCTGCTGC 62.983 66.667 0.00 0.00 0.00 5.25
92 93 4.536526 TGGTTGGCCCTGCTGCAA 62.537 61.111 3.02 0.00 0.00 4.08
93 94 3.994853 GGTTGGCCCTGCTGCAAC 61.995 66.667 3.02 0.00 0.00 4.17
94 95 3.225798 GTTGGCCCTGCTGCAACA 61.226 61.111 3.02 0.00 0.00 3.33
95 96 2.203669 TTGGCCCTGCTGCAACAT 60.204 55.556 3.02 0.00 0.00 2.71
96 97 2.575893 TTGGCCCTGCTGCAACATG 61.576 57.895 3.02 0.00 0.00 3.21
97 98 2.677524 GGCCCTGCTGCAACATGA 60.678 61.111 3.02 0.00 0.00 3.07
98 99 2.707849 GGCCCTGCTGCAACATGAG 61.708 63.158 3.02 0.00 0.00 2.90
99 100 1.676635 GCCCTGCTGCAACATGAGA 60.677 57.895 3.02 0.00 0.00 3.27
100 101 1.035932 GCCCTGCTGCAACATGAGAT 61.036 55.000 3.02 0.00 0.00 2.75
101 102 1.471119 CCCTGCTGCAACATGAGATT 58.529 50.000 3.02 0.00 0.00 2.40
102 103 1.134367 CCCTGCTGCAACATGAGATTG 59.866 52.381 3.02 0.00 0.00 2.67
103 104 1.816835 CCTGCTGCAACATGAGATTGT 59.183 47.619 3.02 0.00 0.00 2.71
104 105 2.230508 CCTGCTGCAACATGAGATTGTT 59.769 45.455 3.02 0.00 40.39 2.83
113 114 6.198650 CAACATGAGATTGTTGCAATAGGA 57.801 37.500 0.59 0.00 46.95 2.94
114 115 5.824904 ACATGAGATTGTTGCAATAGGAC 57.175 39.130 0.59 0.00 0.00 3.85
115 116 5.503927 ACATGAGATTGTTGCAATAGGACT 58.496 37.500 0.59 0.46 0.00 3.85
116 117 5.948162 ACATGAGATTGTTGCAATAGGACTT 59.052 36.000 0.59 0.00 0.00 3.01
117 118 7.112122 ACATGAGATTGTTGCAATAGGACTTA 58.888 34.615 0.59 0.00 0.00 2.24
118 119 6.985188 TGAGATTGTTGCAATAGGACTTAC 57.015 37.500 0.59 0.00 0.00 2.34
119 120 5.580691 TGAGATTGTTGCAATAGGACTTACG 59.419 40.000 0.59 0.00 0.00 3.18
120 121 5.730550 AGATTGTTGCAATAGGACTTACGA 58.269 37.500 0.59 0.00 0.00 3.43
121 122 5.581085 AGATTGTTGCAATAGGACTTACGAC 59.419 40.000 0.59 0.00 0.00 4.34
122 123 4.530710 TGTTGCAATAGGACTTACGACT 57.469 40.909 0.59 0.00 0.00 4.18
123 124 4.890088 TGTTGCAATAGGACTTACGACTT 58.110 39.130 0.59 0.00 0.00 3.01
124 125 6.028146 TGTTGCAATAGGACTTACGACTTA 57.972 37.500 0.59 0.00 0.00 2.24
125 126 6.097356 TGTTGCAATAGGACTTACGACTTAG 58.903 40.000 0.59 0.00 0.00 2.18
126 127 4.679662 TGCAATAGGACTTACGACTTAGC 58.320 43.478 0.00 0.00 0.00 3.09
127 128 3.729716 GCAATAGGACTTACGACTTAGCG 59.270 47.826 0.00 0.00 37.29 4.26
128 129 3.622627 ATAGGACTTACGACTTAGCGC 57.377 47.619 0.00 0.00 33.86 5.92
129 130 1.171308 AGGACTTACGACTTAGCGCA 58.829 50.000 11.47 0.00 33.86 6.09
130 131 1.749634 AGGACTTACGACTTAGCGCAT 59.250 47.619 11.47 0.00 33.86 4.73
131 132 2.117910 GGACTTACGACTTAGCGCATC 58.882 52.381 11.47 0.00 33.86 3.91
132 133 2.479049 GGACTTACGACTTAGCGCATCA 60.479 50.000 11.47 0.00 33.86 3.07
133 134 2.784380 GACTTACGACTTAGCGCATCAG 59.216 50.000 11.47 4.33 33.86 2.90
134 135 1.518929 CTTACGACTTAGCGCATCAGC 59.481 52.381 11.47 0.00 37.42 4.26
135 136 0.248907 TACGACTTAGCGCATCAGCC 60.249 55.000 11.47 0.00 37.52 4.85
136 137 1.519234 CGACTTAGCGCATCAGCCA 60.519 57.895 11.47 0.00 37.52 4.75
137 138 0.877649 CGACTTAGCGCATCAGCCAT 60.878 55.000 11.47 0.00 37.52 4.40
138 139 0.585357 GACTTAGCGCATCAGCCATG 59.415 55.000 11.47 0.00 37.52 3.66
139 140 0.178767 ACTTAGCGCATCAGCCATGA 59.821 50.000 11.47 0.00 40.50 3.07
140 141 0.585357 CTTAGCGCATCAGCCATGAC 59.415 55.000 11.47 0.00 38.57 3.06
141 142 0.107752 TTAGCGCATCAGCCATGACA 60.108 50.000 11.47 0.00 38.57 3.58
142 143 0.107268 TAGCGCATCAGCCATGACAT 59.893 50.000 11.47 0.00 38.57 3.06
143 144 0.750546 AGCGCATCAGCCATGACATT 60.751 50.000 11.47 0.00 38.57 2.71
144 145 0.594028 GCGCATCAGCCATGACATTG 60.594 55.000 0.30 0.00 38.57 2.82
145 146 0.594028 CGCATCAGCCATGACATTGC 60.594 55.000 3.31 3.31 38.57 3.56
146 147 0.249322 GCATCAGCCATGACATTGCC 60.249 55.000 7.83 0.00 38.57 4.52
147 148 0.387929 CATCAGCCATGACATTGCCC 59.612 55.000 7.83 0.00 38.57 5.36
148 149 0.260816 ATCAGCCATGACATTGCCCT 59.739 50.000 7.83 0.00 38.57 5.19
149 150 0.040058 TCAGCCATGACATTGCCCTT 59.960 50.000 7.83 0.00 0.00 3.95
150 151 0.174845 CAGCCATGACATTGCCCTTG 59.825 55.000 7.83 0.00 0.00 3.61
151 152 1.153509 GCCATGACATTGCCCTTGC 60.154 57.895 0.00 0.00 38.26 4.01
152 153 1.518774 CCATGACATTGCCCTTGCC 59.481 57.895 0.00 0.00 36.33 4.52
153 154 0.974010 CCATGACATTGCCCTTGCCT 60.974 55.000 0.00 0.00 36.33 4.75
154 155 0.174845 CATGACATTGCCCTTGCCTG 59.825 55.000 0.00 0.00 36.33 4.85
155 156 0.974010 ATGACATTGCCCTTGCCTGG 60.974 55.000 0.00 0.00 36.33 4.45
162 163 2.677228 CCCTTGCCTGGGGTGTAG 59.323 66.667 3.36 0.00 43.45 2.74
163 164 2.677228 CCTTGCCTGGGGTGTAGG 59.323 66.667 0.00 0.00 38.39 3.18
164 165 2.231380 CCTTGCCTGGGGTGTAGGT 61.231 63.158 0.00 0.00 37.64 3.08
165 166 0.912487 CCTTGCCTGGGGTGTAGGTA 60.912 60.000 0.00 0.00 37.64 3.08
166 167 0.988832 CTTGCCTGGGGTGTAGGTAA 59.011 55.000 0.00 0.00 37.54 2.85
167 168 1.564348 CTTGCCTGGGGTGTAGGTAAT 59.436 52.381 0.00 0.00 38.86 1.89
168 169 1.209621 TGCCTGGGGTGTAGGTAATC 58.790 55.000 0.00 0.00 37.64 1.75
169 170 0.472898 GCCTGGGGTGTAGGTAATCC 59.527 60.000 0.00 0.00 37.64 3.01
170 171 1.137697 CCTGGGGTGTAGGTAATCCC 58.862 60.000 0.00 0.00 39.22 3.85
172 173 2.090380 CCTGGGGTGTAGGTAATCCCTA 60.090 54.545 0.00 0.00 43.87 3.53
184 185 6.651975 AGGTAATCCCTAAGTCGTAATCTG 57.348 41.667 0.00 0.00 43.87 2.90
185 186 6.371278 AGGTAATCCCTAAGTCGTAATCTGA 58.629 40.000 0.00 0.00 43.87 3.27
186 187 6.490721 AGGTAATCCCTAAGTCGTAATCTGAG 59.509 42.308 0.00 0.00 43.87 3.35
187 188 6.489361 GGTAATCCCTAAGTCGTAATCTGAGA 59.511 42.308 0.00 0.00 0.00 3.27
188 189 7.177041 GGTAATCCCTAAGTCGTAATCTGAGAT 59.823 40.741 0.00 0.00 0.00 2.75
189 190 6.827586 ATCCCTAAGTCGTAATCTGAGATC 57.172 41.667 0.00 0.00 0.00 2.75
190 191 5.691896 TCCCTAAGTCGTAATCTGAGATCA 58.308 41.667 0.00 0.00 0.00 2.92
191 192 6.127101 TCCCTAAGTCGTAATCTGAGATCAA 58.873 40.000 0.00 0.00 0.00 2.57
192 193 6.039493 TCCCTAAGTCGTAATCTGAGATCAAC 59.961 42.308 0.00 0.00 0.00 3.18
193 194 6.039941 CCCTAAGTCGTAATCTGAGATCAACT 59.960 42.308 0.00 0.00 0.00 3.16
194 195 7.136119 CCTAAGTCGTAATCTGAGATCAACTC 58.864 42.308 0.00 0.00 45.11 3.01
195 196 5.508200 AGTCGTAATCTGAGATCAACTCC 57.492 43.478 0.00 0.00 44.34 3.85
196 197 4.950475 AGTCGTAATCTGAGATCAACTCCA 59.050 41.667 0.00 0.00 44.34 3.86
197 198 5.067153 AGTCGTAATCTGAGATCAACTCCAG 59.933 44.000 0.00 0.00 44.34 3.86
198 199 4.047822 CGTAATCTGAGATCAACTCCAGC 58.952 47.826 0.00 0.00 44.34 4.85
199 200 3.557228 AATCTGAGATCAACTCCAGCC 57.443 47.619 0.00 0.00 44.34 4.85
200 201 1.942776 TCTGAGATCAACTCCAGCCA 58.057 50.000 0.00 0.00 44.34 4.75
201 202 2.259917 TCTGAGATCAACTCCAGCCAA 58.740 47.619 0.00 0.00 44.34 4.52
202 203 2.027745 TCTGAGATCAACTCCAGCCAAC 60.028 50.000 0.00 0.00 44.34 3.77
203 204 1.338105 TGAGATCAACTCCAGCCAACG 60.338 52.381 0.00 0.00 44.34 4.10
204 205 0.036010 AGATCAACTCCAGCCAACGG 60.036 55.000 0.00 0.00 0.00 4.44
222 223 3.538841 CGTGAGACGCTCAACCAC 58.461 61.111 10.46 0.00 42.46 4.16
223 224 2.365068 CGTGAGACGCTCAACCACG 61.365 63.158 10.46 0.00 42.46 4.94
224 225 1.007734 GTGAGACGCTCAACCACGA 60.008 57.895 10.46 0.00 42.46 4.35
225 226 1.007734 TGAGACGCTCAACCACGAC 60.008 57.895 7.02 0.00 37.57 4.34
226 227 1.007734 GAGACGCTCAACCACGACA 60.008 57.895 0.00 0.00 0.00 4.35
227 228 0.596600 GAGACGCTCAACCACGACAA 60.597 55.000 0.00 0.00 0.00 3.18
228 229 0.874607 AGACGCTCAACCACGACAAC 60.875 55.000 0.00 0.00 0.00 3.32
229 230 0.874607 GACGCTCAACCACGACAACT 60.875 55.000 0.00 0.00 0.00 3.16
230 231 0.874607 ACGCTCAACCACGACAACTC 60.875 55.000 0.00 0.00 0.00 3.01
231 232 0.597637 CGCTCAACCACGACAACTCT 60.598 55.000 0.00 0.00 0.00 3.24
232 233 1.140816 GCTCAACCACGACAACTCTC 58.859 55.000 0.00 0.00 0.00 3.20
233 234 1.784525 CTCAACCACGACAACTCTCC 58.215 55.000 0.00 0.00 0.00 3.71
234 235 1.341531 CTCAACCACGACAACTCTCCT 59.658 52.381 0.00 0.00 0.00 3.69
235 236 1.760613 TCAACCACGACAACTCTCCTT 59.239 47.619 0.00 0.00 0.00 3.36
236 237 2.960384 TCAACCACGACAACTCTCCTTA 59.040 45.455 0.00 0.00 0.00 2.69
237 238 3.057734 CAACCACGACAACTCTCCTTAC 58.942 50.000 0.00 0.00 0.00 2.34
238 239 2.313317 ACCACGACAACTCTCCTTACA 58.687 47.619 0.00 0.00 0.00 2.41
239 240 2.296471 ACCACGACAACTCTCCTTACAG 59.704 50.000 0.00 0.00 0.00 2.74
240 241 2.352814 CCACGACAACTCTCCTTACAGG 60.353 54.545 0.00 0.00 36.46 4.00
241 242 1.893801 ACGACAACTCTCCTTACAGGG 59.106 52.381 0.00 0.00 35.59 4.45
242 243 1.404315 CGACAACTCTCCTTACAGGGC 60.404 57.143 0.00 0.00 35.59 5.19
243 244 0.608640 ACAACTCTCCTTACAGGGCG 59.391 55.000 0.00 0.00 35.59 6.13
244 245 0.895530 CAACTCTCCTTACAGGGCGA 59.104 55.000 0.00 0.00 35.59 5.54
245 246 0.896226 AACTCTCCTTACAGGGCGAC 59.104 55.000 0.00 0.00 35.59 5.19
246 247 0.251653 ACTCTCCTTACAGGGCGACA 60.252 55.000 0.00 0.00 35.59 4.35
247 248 0.895530 CTCTCCTTACAGGGCGACAA 59.104 55.000 0.00 0.00 35.59 3.18
248 249 0.606604 TCTCCTTACAGGGCGACAAC 59.393 55.000 0.00 0.00 35.59 3.32
249 250 0.320374 CTCCTTACAGGGCGACAACA 59.680 55.000 0.00 0.00 35.59 3.33
250 251 0.034337 TCCTTACAGGGCGACAACAC 59.966 55.000 0.00 0.00 35.59 3.32
251 252 0.250124 CCTTACAGGGCGACAACACA 60.250 55.000 0.00 0.00 0.00 3.72
252 253 1.588674 CTTACAGGGCGACAACACAA 58.411 50.000 0.00 0.00 0.00 3.33
253 254 1.263217 CTTACAGGGCGACAACACAAC 59.737 52.381 0.00 0.00 0.00 3.32
254 255 0.876777 TACAGGGCGACAACACAACG 60.877 55.000 0.00 0.00 0.00 4.10
258 259 2.128128 GCGACAACACAACGCGAG 60.128 61.111 15.93 7.57 42.65 5.03
284 285 3.737172 GCCGCTGACCGCAACAAT 61.737 61.111 0.00 0.00 39.08 2.71
285 286 2.176546 CCGCTGACCGCAACAATG 59.823 61.111 0.00 0.00 39.08 2.82
296 297 3.871775 CAACAATGCCCCGATATGC 57.128 52.632 0.00 0.00 0.00 3.14
297 298 1.031235 CAACAATGCCCCGATATGCA 58.969 50.000 0.00 0.00 42.52 3.96
298 299 1.001048 CAACAATGCCCCGATATGCAG 60.001 52.381 0.00 0.00 41.46 4.41
299 300 1.174712 ACAATGCCCCGATATGCAGC 61.175 55.000 0.00 0.00 41.46 5.25
300 301 1.968017 AATGCCCCGATATGCAGCG 60.968 57.895 0.00 0.00 41.46 5.18
302 303 4.996434 GCCCCGATATGCAGCGCT 62.996 66.667 2.64 2.64 30.48 5.92
303 304 2.656646 CCCCGATATGCAGCGCTA 59.343 61.111 10.99 0.00 30.48 4.26
304 305 1.446792 CCCCGATATGCAGCGCTAG 60.447 63.158 10.99 5.98 30.48 3.42
305 306 2.097038 CCCGATATGCAGCGCTAGC 61.097 63.158 10.99 17.19 45.58 3.42
324 325 4.489771 CCAGTGCCACGGGGATCC 62.490 72.222 8.67 1.92 35.59 3.36
334 335 4.883354 GGGGATCCGGCTTGCCTG 62.883 72.222 5.45 3.29 0.00 4.85
336 337 4.496336 GGATCCGGCTTGCCTGCT 62.496 66.667 10.12 0.00 0.00 4.24
337 338 2.899339 GATCCGGCTTGCCTGCTC 60.899 66.667 10.12 0.76 0.00 4.26
338 339 4.496336 ATCCGGCTTGCCTGCTCC 62.496 66.667 10.12 0.00 0.00 4.70
349 350 4.172512 CTGCTCCCTCGCCATGCT 62.173 66.667 0.00 0.00 0.00 3.79
350 351 4.166888 TGCTCCCTCGCCATGCTC 62.167 66.667 0.00 0.00 0.00 4.26
351 352 4.925861 GCTCCCTCGCCATGCTCC 62.926 72.222 0.00 0.00 0.00 4.70
352 353 3.160047 CTCCCTCGCCATGCTCCT 61.160 66.667 0.00 0.00 0.00 3.69
353 354 1.834378 CTCCCTCGCCATGCTCCTA 60.834 63.158 0.00 0.00 0.00 2.94
354 355 1.152247 TCCCTCGCCATGCTCCTAT 60.152 57.895 0.00 0.00 0.00 2.57
355 356 1.188219 TCCCTCGCCATGCTCCTATC 61.188 60.000 0.00 0.00 0.00 2.08
356 357 1.294780 CCTCGCCATGCTCCTATCC 59.705 63.158 0.00 0.00 0.00 2.59
357 358 1.080230 CTCGCCATGCTCCTATCCG 60.080 63.158 0.00 0.00 0.00 4.18
358 359 1.810606 CTCGCCATGCTCCTATCCGT 61.811 60.000 0.00 0.00 0.00 4.69
359 360 1.665916 CGCCATGCTCCTATCCGTG 60.666 63.158 0.00 0.00 0.00 4.94
360 361 1.963338 GCCATGCTCCTATCCGTGC 60.963 63.158 0.00 0.00 0.00 5.34
361 362 1.750930 CCATGCTCCTATCCGTGCT 59.249 57.895 0.00 0.00 0.00 4.40
362 363 0.320247 CCATGCTCCTATCCGTGCTC 60.320 60.000 0.00 0.00 0.00 4.26
363 364 0.320247 CATGCTCCTATCCGTGCTCC 60.320 60.000 0.00 0.00 0.00 4.70
364 365 1.476007 ATGCTCCTATCCGTGCTCCC 61.476 60.000 0.00 0.00 0.00 4.30
365 366 2.134287 GCTCCTATCCGTGCTCCCA 61.134 63.158 0.00 0.00 0.00 4.37
366 367 1.742768 CTCCTATCCGTGCTCCCAC 59.257 63.158 0.00 0.00 38.62 4.61
367 368 0.757188 CTCCTATCCGTGCTCCCACT 60.757 60.000 0.00 0.00 39.86 4.00
368 369 0.755698 TCCTATCCGTGCTCCCACTC 60.756 60.000 0.00 0.00 39.86 3.51
369 370 1.742768 CTATCCGTGCTCCCACTCC 59.257 63.158 0.00 0.00 39.86 3.85
370 371 1.001120 TATCCGTGCTCCCACTCCA 59.999 57.895 0.00 0.00 39.86 3.86
371 372 0.398522 TATCCGTGCTCCCACTCCAT 60.399 55.000 0.00 0.00 39.86 3.41
372 373 1.690219 ATCCGTGCTCCCACTCCATC 61.690 60.000 0.00 0.00 39.86 3.51
373 374 2.187946 CGTGCTCCCACTCCATCC 59.812 66.667 0.00 0.00 39.86 3.51
374 375 2.362369 CGTGCTCCCACTCCATCCT 61.362 63.158 0.00 0.00 39.86 3.24
375 376 1.043116 CGTGCTCCCACTCCATCCTA 61.043 60.000 0.00 0.00 39.86 2.94
376 377 0.466124 GTGCTCCCACTCCATCCTAC 59.534 60.000 0.00 0.00 38.93 3.18
377 378 1.043116 TGCTCCCACTCCATCCTACG 61.043 60.000 0.00 0.00 0.00 3.51
378 379 1.749334 GCTCCCACTCCATCCTACGG 61.749 65.000 0.00 0.00 0.00 4.02
379 380 1.749334 CTCCCACTCCATCCTACGGC 61.749 65.000 0.00 0.00 0.00 5.68
380 381 1.762460 CCCACTCCATCCTACGGCT 60.762 63.158 0.00 0.00 0.00 5.52
381 382 1.742768 CCACTCCATCCTACGGCTC 59.257 63.158 0.00 0.00 0.00 4.70
382 383 0.757188 CCACTCCATCCTACGGCTCT 60.757 60.000 0.00 0.00 0.00 4.09
383 384 0.671251 CACTCCATCCTACGGCTCTC 59.329 60.000 0.00 0.00 0.00 3.20
384 385 0.468400 ACTCCATCCTACGGCTCTCC 60.468 60.000 0.00 0.00 0.00 3.71
385 386 0.178975 CTCCATCCTACGGCTCTCCT 60.179 60.000 0.00 0.00 0.00 3.69
386 387 0.261991 TCCATCCTACGGCTCTCCTT 59.738 55.000 0.00 0.00 0.00 3.36
387 388 1.123928 CCATCCTACGGCTCTCCTTT 58.876 55.000 0.00 0.00 0.00 3.11
388 389 1.486726 CCATCCTACGGCTCTCCTTTT 59.513 52.381 0.00 0.00 0.00 2.27
389 390 2.483889 CCATCCTACGGCTCTCCTTTTC 60.484 54.545 0.00 0.00 0.00 2.29
390 391 2.233305 TCCTACGGCTCTCCTTTTCT 57.767 50.000 0.00 0.00 0.00 2.52
391 392 2.100989 TCCTACGGCTCTCCTTTTCTC 58.899 52.381 0.00 0.00 0.00 2.87
392 393 1.137282 CCTACGGCTCTCCTTTTCTCC 59.863 57.143 0.00 0.00 0.00 3.71
393 394 2.104170 CTACGGCTCTCCTTTTCTCCT 58.896 52.381 0.00 0.00 0.00 3.69
394 395 1.353091 ACGGCTCTCCTTTTCTCCTT 58.647 50.000 0.00 0.00 0.00 3.36
395 396 1.700186 ACGGCTCTCCTTTTCTCCTTT 59.300 47.619 0.00 0.00 0.00 3.11
396 397 2.106684 ACGGCTCTCCTTTTCTCCTTTT 59.893 45.455 0.00 0.00 0.00 2.27
397 398 3.149981 CGGCTCTCCTTTTCTCCTTTTT 58.850 45.455 0.00 0.00 0.00 1.94
398 399 3.189495 CGGCTCTCCTTTTCTCCTTTTTC 59.811 47.826 0.00 0.00 0.00 2.29
399 400 4.402829 GGCTCTCCTTTTCTCCTTTTTCT 58.597 43.478 0.00 0.00 0.00 2.52
400 401 4.830046 GGCTCTCCTTTTCTCCTTTTTCTT 59.170 41.667 0.00 0.00 0.00 2.52
401 402 5.303078 GGCTCTCCTTTTCTCCTTTTTCTTT 59.697 40.000 0.00 0.00 0.00 2.52
402 403 6.442952 GCTCTCCTTTTCTCCTTTTTCTTTC 58.557 40.000 0.00 0.00 0.00 2.62
403 404 6.264292 GCTCTCCTTTTCTCCTTTTTCTTTCT 59.736 38.462 0.00 0.00 0.00 2.52
404 405 7.445707 GCTCTCCTTTTCTCCTTTTTCTTTCTA 59.554 37.037 0.00 0.00 0.00 2.10
405 406 9.343539 CTCTCCTTTTCTCCTTTTTCTTTCTAA 57.656 33.333 0.00 0.00 0.00 2.10
406 407 9.868160 TCTCCTTTTCTCCTTTTTCTTTCTAAT 57.132 29.630 0.00 0.00 0.00 1.73
408 409 9.868160 TCCTTTTCTCCTTTTTCTTTCTAATCT 57.132 29.630 0.00 0.00 0.00 2.40
422 423 8.429237 TCTTTCTAATCTAATCATCTCCCTCC 57.571 38.462 0.00 0.00 0.00 4.30
423 424 7.456269 TCTTTCTAATCTAATCATCTCCCTCCC 59.544 40.741 0.00 0.00 0.00 4.30
424 425 6.491408 TCTAATCTAATCATCTCCCTCCCT 57.509 41.667 0.00 0.00 0.00 4.20
425 426 6.259893 TCTAATCTAATCATCTCCCTCCCTG 58.740 44.000 0.00 0.00 0.00 4.45
426 427 4.774243 ATCTAATCATCTCCCTCCCTGA 57.226 45.455 0.00 0.00 0.00 3.86
427 428 4.774243 TCTAATCATCTCCCTCCCTGAT 57.226 45.455 0.00 0.00 0.00 2.90
428 429 5.098575 TCTAATCATCTCCCTCCCTGATT 57.901 43.478 0.00 0.00 40.44 2.57
429 430 5.480710 TCTAATCATCTCCCTCCCTGATTT 58.519 41.667 2.37 0.00 38.77 2.17
430 431 5.913534 TCTAATCATCTCCCTCCCTGATTTT 59.086 40.000 2.37 0.00 38.77 1.82
431 432 7.082316 TCTAATCATCTCCCTCCCTGATTTTA 58.918 38.462 2.37 0.00 38.77 1.52
432 433 6.596869 AATCATCTCCCTCCCTGATTTTAA 57.403 37.500 0.00 0.00 35.38 1.52
433 434 5.636903 TCATCTCCCTCCCTGATTTTAAG 57.363 43.478 0.00 0.00 0.00 1.85
434 435 4.413520 TCATCTCCCTCCCTGATTTTAAGG 59.586 45.833 0.00 0.00 34.31 2.69
443 444 3.225940 CCTGATTTTAAGGGGATGGAGC 58.774 50.000 0.00 0.00 0.00 4.70
444 445 3.225940 CTGATTTTAAGGGGATGGAGCC 58.774 50.000 0.00 0.00 0.00 4.70
445 446 2.230660 GATTTTAAGGGGATGGAGCCG 58.769 52.381 0.00 0.00 0.00 5.52
446 447 0.257616 TTTTAAGGGGATGGAGCCGG 59.742 55.000 0.00 0.00 0.00 6.13
447 448 1.641552 TTTAAGGGGATGGAGCCGGG 61.642 60.000 2.18 0.00 0.00 5.73
452 453 3.168528 GGATGGAGCCGGGCCTTA 61.169 66.667 17.02 1.83 0.00 2.69
453 454 2.529744 GGATGGAGCCGGGCCTTAT 61.530 63.158 17.02 7.32 0.00 1.73
454 455 1.456287 GATGGAGCCGGGCCTTATT 59.544 57.895 17.02 0.00 0.00 1.40
455 456 0.178990 GATGGAGCCGGGCCTTATTT 60.179 55.000 17.02 0.00 0.00 1.40
456 457 0.261696 ATGGAGCCGGGCCTTATTTT 59.738 50.000 17.02 0.00 0.00 1.82
457 458 0.682855 TGGAGCCGGGCCTTATTTTG 60.683 55.000 17.02 0.00 0.00 2.44
458 459 0.683179 GGAGCCGGGCCTTATTTTGT 60.683 55.000 17.02 0.00 0.00 2.83
459 460 1.182667 GAGCCGGGCCTTATTTTGTT 58.817 50.000 17.02 0.00 0.00 2.83
460 461 1.134367 GAGCCGGGCCTTATTTTGTTC 59.866 52.381 17.02 0.00 0.00 3.18
461 462 0.174845 GCCGGGCCTTATTTTGTTCC 59.825 55.000 8.12 0.00 0.00 3.62
462 463 1.551452 CCGGGCCTTATTTTGTTCCA 58.449 50.000 0.84 0.00 0.00 3.53
463 464 1.896465 CCGGGCCTTATTTTGTTCCAA 59.104 47.619 0.84 0.00 0.00 3.53
464 465 2.353307 CCGGGCCTTATTTTGTTCCAAC 60.353 50.000 0.84 0.00 0.00 3.77
465 466 2.560981 CGGGCCTTATTTTGTTCCAACT 59.439 45.455 0.84 0.00 0.00 3.16
466 467 3.759618 CGGGCCTTATTTTGTTCCAACTA 59.240 43.478 0.84 0.00 0.00 2.24
467 468 4.218852 CGGGCCTTATTTTGTTCCAACTAA 59.781 41.667 0.84 0.00 0.00 2.24
468 469 5.279056 CGGGCCTTATTTTGTTCCAACTAAA 60.279 40.000 0.84 2.28 37.85 1.85
469 470 6.573485 CGGGCCTTATTTTGTTCCAACTAAAT 60.573 38.462 0.84 13.80 43.31 1.40
470 471 6.816640 GGGCCTTATTTTGTTCCAACTAAATC 59.183 38.462 13.00 2.74 41.22 2.17
471 472 7.382898 GGCCTTATTTTGTTCCAACTAAATCA 58.617 34.615 13.00 4.76 41.22 2.57
472 473 8.040727 GGCCTTATTTTGTTCCAACTAAATCAT 58.959 33.333 13.00 0.00 41.22 2.45
473 474 8.872845 GCCTTATTTTGTTCCAACTAAATCATG 58.127 33.333 13.00 4.31 41.22 3.07
474 475 8.872845 CCTTATTTTGTTCCAACTAAATCATGC 58.127 33.333 13.00 0.00 41.22 4.06
475 476 8.770438 TTATTTTGTTCCAACTAAATCATGCC 57.230 30.769 13.00 0.00 41.22 4.40
476 477 5.798125 TTTGTTCCAACTAAATCATGCCA 57.202 34.783 0.00 0.00 0.00 4.92
477 478 4.782019 TGTTCCAACTAAATCATGCCAC 57.218 40.909 0.00 0.00 0.00 5.01
478 479 3.190327 TGTTCCAACTAAATCATGCCACG 59.810 43.478 0.00 0.00 0.00 4.94
479 480 3.066291 TCCAACTAAATCATGCCACGT 57.934 42.857 0.00 0.00 0.00 4.49
480 481 4.209307 TCCAACTAAATCATGCCACGTA 57.791 40.909 0.00 0.00 0.00 3.57
481 482 4.776349 TCCAACTAAATCATGCCACGTAT 58.224 39.130 0.00 0.00 0.00 3.06
482 483 4.574421 TCCAACTAAATCATGCCACGTATG 59.426 41.667 0.00 0.00 0.00 2.39
483 484 4.282068 CAACTAAATCATGCCACGTATGC 58.718 43.478 2.46 2.46 0.00 3.14
484 485 2.543848 ACTAAATCATGCCACGTATGCG 59.456 45.455 0.19 0.19 44.93 4.73
485 486 1.662517 AAATCATGCCACGTATGCGA 58.337 45.000 11.07 0.00 42.00 5.10
486 487 1.220529 AATCATGCCACGTATGCGAG 58.779 50.000 11.07 0.98 42.00 5.03
487 488 0.389025 ATCATGCCACGTATGCGAGA 59.611 50.000 11.07 5.59 42.00 4.04
488 489 0.249031 TCATGCCACGTATGCGAGAG 60.249 55.000 11.07 0.00 42.00 3.20
500 501 2.415010 CGAGAGCACGGATGGGAG 59.585 66.667 0.00 0.00 0.00 4.30
501 502 2.107953 GAGAGCACGGATGGGAGC 59.892 66.667 0.00 0.00 0.00 4.70
502 503 2.685017 AGAGCACGGATGGGAGCA 60.685 61.111 0.00 0.00 0.00 4.26
503 504 2.512515 GAGCACGGATGGGAGCAC 60.513 66.667 0.00 0.00 0.00 4.40
504 505 4.457496 AGCACGGATGGGAGCACG 62.457 66.667 0.00 0.00 0.00 5.34
506 507 4.457496 CACGGATGGGAGCACGCT 62.457 66.667 0.00 0.00 0.00 5.07
507 508 4.457496 ACGGATGGGAGCACGCTG 62.457 66.667 0.00 0.00 0.00 5.18
509 510 4.864334 GGATGGGAGCACGCTGGG 62.864 72.222 0.00 0.00 0.00 4.45
510 511 4.864334 GATGGGAGCACGCTGGGG 62.864 72.222 0.00 0.00 0.00 4.96
522 523 3.655211 CTGGGGGAGCAGGCAAGT 61.655 66.667 0.00 0.00 0.00 3.16
523 524 3.635268 CTGGGGGAGCAGGCAAGTC 62.635 68.421 0.00 0.00 0.00 3.01
524 525 3.334054 GGGGGAGCAGGCAAGTCT 61.334 66.667 0.00 0.00 0.00 3.24
525 526 2.270527 GGGGAGCAGGCAAGTCTC 59.729 66.667 0.00 0.00 0.00 3.36
526 527 2.125350 GGGAGCAGGCAAGTCTCG 60.125 66.667 0.00 0.00 0.00 4.04
527 528 2.659610 GGAGCAGGCAAGTCTCGT 59.340 61.111 0.00 0.00 0.00 4.18
528 529 1.446966 GGAGCAGGCAAGTCTCGTC 60.447 63.158 0.00 0.00 0.00 4.20
529 530 1.446966 GAGCAGGCAAGTCTCGTCC 60.447 63.158 0.00 0.00 0.00 4.79
530 531 2.811317 GCAGGCAAGTCTCGTCCG 60.811 66.667 0.00 0.00 0.00 4.79
531 532 2.651361 CAGGCAAGTCTCGTCCGT 59.349 61.111 0.00 0.00 0.00 4.69
532 533 1.734477 CAGGCAAGTCTCGTCCGTG 60.734 63.158 0.00 0.00 0.00 4.94
533 534 3.112709 GGCAAGTCTCGTCCGTGC 61.113 66.667 0.00 0.00 34.42 5.34
534 535 3.112709 GCAAGTCTCGTCCGTGCC 61.113 66.667 0.00 0.00 0.00 5.01
535 536 2.338620 CAAGTCTCGTCCGTGCCA 59.661 61.111 0.00 0.00 0.00 4.92
536 537 2.022129 CAAGTCTCGTCCGTGCCAC 61.022 63.158 0.00 0.00 0.00 5.01
537 538 3.553437 AAGTCTCGTCCGTGCCACG 62.553 63.158 10.95 10.95 42.11 4.94
547 548 3.136123 GTGCCACGGAGCATGCAT 61.136 61.111 21.98 4.75 46.24 3.96
548 549 3.135457 TGCCACGGAGCATGCATG 61.135 61.111 22.70 22.70 38.00 4.06
558 559 2.725641 CATGCATGCATCCCCACG 59.274 61.111 30.07 14.24 33.90 4.94
559 560 1.824760 CATGCATGCATCCCCACGA 60.825 57.895 30.07 0.00 33.90 4.35
560 561 1.076850 ATGCATGCATCCCCACGAA 60.077 52.632 27.46 0.00 29.42 3.85
561 562 1.105167 ATGCATGCATCCCCACGAAG 61.105 55.000 27.46 0.00 29.42 3.79
562 563 1.451927 GCATGCATCCCCACGAAGA 60.452 57.895 14.21 0.00 0.00 2.87
563 564 1.031571 GCATGCATCCCCACGAAGAA 61.032 55.000 14.21 0.00 0.00 2.52
564 565 1.019673 CATGCATCCCCACGAAGAAG 58.980 55.000 0.00 0.00 0.00 2.85
565 566 0.620556 ATGCATCCCCACGAAGAAGT 59.379 50.000 0.00 0.00 0.00 3.01
566 567 0.036388 TGCATCCCCACGAAGAAGTC 60.036 55.000 0.00 0.00 0.00 3.01
574 575 2.736995 CGAAGAAGTCGGCGGCAA 60.737 61.111 16.23 0.00 46.45 4.52
575 576 2.730672 CGAAGAAGTCGGCGGCAAG 61.731 63.158 16.23 0.00 46.45 4.01
599 600 3.787001 GCTAGCGGCCACTTCCCT 61.787 66.667 2.24 0.00 34.27 4.20
600 601 2.432300 GCTAGCGGCCACTTCCCTA 61.432 63.158 2.24 0.00 34.27 3.53
601 602 1.968050 GCTAGCGGCCACTTCCCTAA 61.968 60.000 2.24 0.00 34.27 2.69
602 603 0.539986 CTAGCGGCCACTTCCCTAAA 59.460 55.000 2.24 0.00 0.00 1.85
603 604 1.141053 CTAGCGGCCACTTCCCTAAAT 59.859 52.381 2.24 0.00 0.00 1.40
604 605 0.331616 AGCGGCCACTTCCCTAAATT 59.668 50.000 2.24 0.00 0.00 1.82
605 606 0.455815 GCGGCCACTTCCCTAAATTG 59.544 55.000 2.24 0.00 0.00 2.32
606 607 1.102978 CGGCCACTTCCCTAAATTGG 58.897 55.000 2.24 0.00 39.96 3.16
607 608 1.615919 CGGCCACTTCCCTAAATTGGT 60.616 52.381 2.24 0.00 39.34 3.67
608 609 1.824852 GGCCACTTCCCTAAATTGGTG 59.175 52.381 0.00 0.00 39.34 4.17
609 610 1.824852 GCCACTTCCCTAAATTGGTGG 59.175 52.381 0.00 0.00 44.69 4.61
610 611 1.824852 CCACTTCCCTAAATTGGTGGC 59.175 52.381 0.00 0.00 37.89 5.01
611 612 1.472480 CACTTCCCTAAATTGGTGGCG 59.528 52.381 0.00 0.00 0.00 5.69
612 613 1.353022 ACTTCCCTAAATTGGTGGCGA 59.647 47.619 0.00 0.00 0.00 5.54
613 614 1.743394 CTTCCCTAAATTGGTGGCGAC 59.257 52.381 0.00 0.00 0.00 5.19
614 615 0.391927 TCCCTAAATTGGTGGCGACG 60.392 55.000 0.00 0.00 0.00 5.12
615 616 1.373590 CCCTAAATTGGTGGCGACGG 61.374 60.000 0.00 0.00 0.00 4.79
616 617 1.427819 CTAAATTGGTGGCGACGGC 59.572 57.895 15.43 15.43 38.90 5.68
651 652 3.916359 TGCCCATGCATGAATCAATTT 57.084 38.095 28.31 0.00 44.23 1.82
652 653 3.536570 TGCCCATGCATGAATCAATTTG 58.463 40.909 28.31 7.50 44.23 2.32
653 654 2.875933 GCCCATGCATGAATCAATTTGG 59.124 45.455 28.31 16.98 37.47 3.28
654 655 3.683281 GCCCATGCATGAATCAATTTGGT 60.683 43.478 28.31 0.00 37.47 3.67
655 656 4.519213 CCCATGCATGAATCAATTTGGTT 58.481 39.130 28.31 0.00 0.00 3.67
656 657 4.334203 CCCATGCATGAATCAATTTGGTTG 59.666 41.667 28.31 5.60 39.25 3.77
657 658 4.938832 CCATGCATGAATCAATTTGGTTGT 59.061 37.500 28.31 0.00 38.95 3.32
658 659 5.064198 CCATGCATGAATCAATTTGGTTGTC 59.936 40.000 28.31 0.00 38.95 3.18
659 660 5.471556 TGCATGAATCAATTTGGTTGTCT 57.528 34.783 0.00 0.00 38.95 3.41
660 661 5.856156 TGCATGAATCAATTTGGTTGTCTT 58.144 33.333 0.00 0.00 38.95 3.01
661 662 6.289834 TGCATGAATCAATTTGGTTGTCTTT 58.710 32.000 0.00 0.00 38.95 2.52
662 663 6.766944 TGCATGAATCAATTTGGTTGTCTTTT 59.233 30.769 0.00 0.00 38.95 2.27
663 664 7.073265 GCATGAATCAATTTGGTTGTCTTTTG 58.927 34.615 0.00 0.00 38.95 2.44
664 665 7.254863 GCATGAATCAATTTGGTTGTCTTTTGT 60.255 33.333 0.00 0.00 38.95 2.83
665 666 7.536895 TGAATCAATTTGGTTGTCTTTTGTG 57.463 32.000 0.00 0.00 38.95 3.33
666 667 7.326454 TGAATCAATTTGGTTGTCTTTTGTGA 58.674 30.769 0.00 0.00 38.95 3.58
667 668 7.986320 TGAATCAATTTGGTTGTCTTTTGTGAT 59.014 29.630 0.00 0.00 38.95 3.06
668 669 8.735692 AATCAATTTGGTTGTCTTTTGTGATT 57.264 26.923 0.00 0.00 38.95 2.57
669 670 9.829507 AATCAATTTGGTTGTCTTTTGTGATTA 57.170 25.926 0.00 0.00 38.95 1.75
671 672 9.829507 TCAATTTGGTTGTCTTTTGTGATTATT 57.170 25.926 0.00 0.00 38.95 1.40
674 675 8.810652 TTTGGTTGTCTTTTGTGATTATTAGC 57.189 30.769 0.00 0.00 0.00 3.09
675 676 7.517614 TGGTTGTCTTTTGTGATTATTAGCA 57.482 32.000 0.00 0.00 0.00 3.49
676 677 7.592938 TGGTTGTCTTTTGTGATTATTAGCAG 58.407 34.615 0.00 0.00 0.00 4.24
677 678 7.446931 TGGTTGTCTTTTGTGATTATTAGCAGA 59.553 33.333 0.00 0.00 0.00 4.26
678 679 7.965107 GGTTGTCTTTTGTGATTATTAGCAGAG 59.035 37.037 0.00 0.00 0.00 3.35
679 680 7.615582 TGTCTTTTGTGATTATTAGCAGAGG 57.384 36.000 0.00 0.00 0.00 3.69
680 681 7.168219 TGTCTTTTGTGATTATTAGCAGAGGT 58.832 34.615 0.00 0.00 0.00 3.85
681 682 7.334421 TGTCTTTTGTGATTATTAGCAGAGGTC 59.666 37.037 0.00 0.00 0.00 3.85
682 683 7.550906 GTCTTTTGTGATTATTAGCAGAGGTCT 59.449 37.037 0.00 0.00 0.00 3.85
683 684 8.758829 TCTTTTGTGATTATTAGCAGAGGTCTA 58.241 33.333 0.00 0.00 0.00 2.59
684 685 9.383519 CTTTTGTGATTATTAGCAGAGGTCTAA 57.616 33.333 0.00 0.00 0.00 2.10
685 686 9.905713 TTTTGTGATTATTAGCAGAGGTCTAAT 57.094 29.630 0.00 0.00 39.36 1.73
686 687 9.547753 TTTGTGATTATTAGCAGAGGTCTAATC 57.452 33.333 0.00 0.00 37.73 1.75
687 688 8.250143 TGTGATTATTAGCAGAGGTCTAATCA 57.750 34.615 0.00 0.00 37.73 2.57
870 875 4.860881 CCCTGCTCGGCTCCCCTA 62.861 72.222 0.00 0.00 0.00 3.53
972 977 1.679898 CACGGGAAGGAGAAGGCTT 59.320 57.895 0.00 0.00 0.00 4.35
1055 1064 1.605058 CTGTCCCTTCCCGTCATCGT 61.605 60.000 0.00 0.00 35.01 3.73
1106 1115 2.022240 GACCATCCCCTCTCGCTCAC 62.022 65.000 0.00 0.00 0.00 3.51
1540 2518 3.059325 GCGCAGTACTGAATCATGGATTC 60.059 47.826 27.08 11.12 45.93 2.52
1600 2578 1.117749 TCCTCCTCATGCTCATCGGG 61.118 60.000 0.00 0.00 0.00 5.14
1935 2936 3.500680 GCAGATACCGTTTTTCTTGGTGA 59.499 43.478 0.00 0.00 37.20 4.02
2169 3646 8.699130 AGATTTCTTGTTTCTTTGGAGTTTCAT 58.301 29.630 0.00 0.00 0.00 2.57
2205 3843 4.515191 TGTCTTGTTAGTGGATGCAGTTTC 59.485 41.667 0.00 0.00 0.00 2.78
2235 3874 4.380531 AGATGAACTAGAGAGAGAGAGCG 58.619 47.826 0.00 0.00 0.00 5.03
2429 4505 3.293337 CAGATGGGAGATGGCAAAATCA 58.707 45.455 0.00 0.00 0.00 2.57
2541 4833 1.303561 GGACATGACTGCAGCCCAA 60.304 57.895 15.27 0.00 0.00 4.12
2657 4949 4.021719 CCATTTTCCTGCTCACAAGTTGAT 60.022 41.667 10.54 0.00 32.17 2.57
2789 5661 7.492994 GTGACTATTCTGGAGATGGTCTTTAAC 59.507 40.741 0.00 0.00 0.00 2.01
3261 8342 8.882736 CAGTAGTGTGCATATCTTTGAAACATA 58.117 33.333 0.00 0.00 0.00 2.29
3353 8434 9.490379 GAATTTTAGGAGTAAACTGACTGAAGA 57.510 33.333 0.00 0.00 0.00 2.87
3871 14279 3.037549 ACAATTTGGGAAGGAGCAACAA 58.962 40.909 0.78 0.00 0.00 2.83
3929 14337 5.845391 TTACTCCCAAAGGAAACAAACAG 57.155 39.130 0.00 0.00 43.40 3.16
4003 14417 5.656213 TTTTCCGTTAGTTTTTCCCACAA 57.344 34.783 0.00 0.00 0.00 3.33
4136 14576 9.872757 TGAAAGCTTTTAGTTAACAGTAAATCG 57.127 29.630 14.05 1.81 29.54 3.34
4381 15892 2.124151 CATGGGCTAGCACCACCC 60.124 66.667 22.41 12.51 41.58 4.61
4569 16089 1.301716 GACGCAGCTCAAGGTGGAA 60.302 57.895 10.90 0.00 43.24 3.53
4656 16178 1.974265 TCGTGGTTGAAATTCCAGCA 58.026 45.000 0.00 0.00 34.16 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.271163 CCTTTCTACCTTGGTGGCGAA 60.271 52.381 2.03 0.51 40.22 4.70
2 3 0.323629 CCTTTCTACCTTGGTGGCGA 59.676 55.000 2.03 0.00 40.22 5.54
4 5 2.160205 GTTCCTTTCTACCTTGGTGGC 58.840 52.381 2.03 0.00 40.22 5.01
5 6 2.554564 GGGTTCCTTTCTACCTTGGTGG 60.555 54.545 2.03 0.00 42.93 4.61
6 7 2.791655 GGGTTCCTTTCTACCTTGGTG 58.208 52.381 2.03 0.00 34.75 4.17
7 8 1.350019 CGGGTTCCTTTCTACCTTGGT 59.650 52.381 0.00 0.00 34.75 3.67
8 9 1.350019 ACGGGTTCCTTTCTACCTTGG 59.650 52.381 0.00 0.00 34.75 3.61
9 10 2.038033 TCACGGGTTCCTTTCTACCTTG 59.962 50.000 0.00 0.00 34.75 3.61
10 11 2.302157 CTCACGGGTTCCTTTCTACCTT 59.698 50.000 0.00 0.00 34.75 3.50
11 12 1.900486 CTCACGGGTTCCTTTCTACCT 59.100 52.381 0.00 0.00 34.75 3.08
12 13 1.066358 CCTCACGGGTTCCTTTCTACC 60.066 57.143 0.00 0.00 0.00 3.18
13 14 1.897802 TCCTCACGGGTTCCTTTCTAC 59.102 52.381 0.00 0.00 36.25 2.59
14 15 2.176889 CTCCTCACGGGTTCCTTTCTA 58.823 52.381 0.00 0.00 36.25 2.10
15 16 0.977395 CTCCTCACGGGTTCCTTTCT 59.023 55.000 0.00 0.00 36.25 2.52
16 17 0.673956 GCTCCTCACGGGTTCCTTTC 60.674 60.000 0.00 0.00 36.25 2.62
17 18 1.375326 GCTCCTCACGGGTTCCTTT 59.625 57.895 0.00 0.00 36.25 3.11
18 19 1.831652 CTGCTCCTCACGGGTTCCTT 61.832 60.000 0.00 0.00 36.25 3.36
19 20 2.203788 TGCTCCTCACGGGTTCCT 60.204 61.111 0.00 0.00 36.25 3.36
20 21 2.266055 CTGCTCCTCACGGGTTCC 59.734 66.667 0.00 0.00 36.25 3.62
21 22 1.374758 CACTGCTCCTCACGGGTTC 60.375 63.158 0.00 0.00 36.25 3.62
22 23 2.140792 ACACTGCTCCTCACGGGTT 61.141 57.895 0.00 0.00 36.25 4.11
23 24 2.524394 ACACTGCTCCTCACGGGT 60.524 61.111 0.00 0.00 36.25 5.28
24 25 2.047844 CACACTGCTCCTCACGGG 60.048 66.667 0.00 0.00 0.00 5.28
25 26 0.668706 CTTCACACTGCTCCTCACGG 60.669 60.000 0.00 0.00 0.00 4.94
26 27 0.668706 CCTTCACACTGCTCCTCACG 60.669 60.000 0.00 0.00 0.00 4.35
27 28 0.394565 ACCTTCACACTGCTCCTCAC 59.605 55.000 0.00 0.00 0.00 3.51
28 29 1.131638 AACCTTCACACTGCTCCTCA 58.868 50.000 0.00 0.00 0.00 3.86
29 30 3.244249 ACTTAACCTTCACACTGCTCCTC 60.244 47.826 0.00 0.00 0.00 3.71
30 31 2.706190 ACTTAACCTTCACACTGCTCCT 59.294 45.455 0.00 0.00 0.00 3.69
31 32 3.127425 ACTTAACCTTCACACTGCTCC 57.873 47.619 0.00 0.00 0.00 4.70
32 33 5.526111 TGTAAACTTAACCTTCACACTGCTC 59.474 40.000 0.00 0.00 0.00 4.26
33 34 5.433526 TGTAAACTTAACCTTCACACTGCT 58.566 37.500 0.00 0.00 0.00 4.24
34 35 5.744666 TGTAAACTTAACCTTCACACTGC 57.255 39.130 0.00 0.00 0.00 4.40
37 38 9.836076 GGAATTATGTAAACTTAACCTTCACAC 57.164 33.333 0.00 0.00 0.00 3.82
38 39 9.802039 AGGAATTATGTAAACTTAACCTTCACA 57.198 29.630 0.00 0.00 0.00 3.58
43 44 9.408648 CCATGAGGAATTATGTAAACTTAACCT 57.591 33.333 0.00 0.00 36.89 3.50
44 45 9.403583 TCCATGAGGAATTATGTAAACTTAACC 57.596 33.333 0.00 0.00 42.23 2.85
48 49 9.401058 CTTCTCCATGAGGAATTATGTAAACTT 57.599 33.333 0.00 0.00 45.19 2.66
49 50 8.552296 ACTTCTCCATGAGGAATTATGTAAACT 58.448 33.333 0.00 0.00 45.19 2.66
50 51 8.616076 CACTTCTCCATGAGGAATTATGTAAAC 58.384 37.037 0.00 0.00 45.19 2.01
51 52 7.775093 CCACTTCTCCATGAGGAATTATGTAAA 59.225 37.037 0.00 0.00 45.19 2.01
52 53 7.092444 ACCACTTCTCCATGAGGAATTATGTAA 60.092 37.037 0.00 0.00 45.19 2.41
53 54 6.386927 ACCACTTCTCCATGAGGAATTATGTA 59.613 38.462 0.00 0.00 45.19 2.29
54 55 5.192522 ACCACTTCTCCATGAGGAATTATGT 59.807 40.000 0.00 0.00 45.19 2.29
55 56 5.688807 ACCACTTCTCCATGAGGAATTATG 58.311 41.667 0.00 0.00 45.19 1.90
56 57 5.983333 ACCACTTCTCCATGAGGAATTAT 57.017 39.130 0.00 0.00 45.19 1.28
57 58 5.500234 CAACCACTTCTCCATGAGGAATTA 58.500 41.667 0.00 0.00 45.19 1.40
58 59 4.338879 CAACCACTTCTCCATGAGGAATT 58.661 43.478 0.00 0.00 45.19 2.17
59 60 3.308688 CCAACCACTTCTCCATGAGGAAT 60.309 47.826 0.00 0.00 45.19 3.01
60 61 2.040278 CCAACCACTTCTCCATGAGGAA 59.960 50.000 0.00 0.00 45.19 3.36
61 62 1.630369 CCAACCACTTCTCCATGAGGA 59.370 52.381 0.00 0.00 43.21 3.71
62 63 1.952367 GCCAACCACTTCTCCATGAGG 60.952 57.143 0.00 0.00 0.00 3.86
63 64 1.457346 GCCAACCACTTCTCCATGAG 58.543 55.000 0.00 0.00 0.00 2.90
64 65 0.038166 GGCCAACCACTTCTCCATGA 59.962 55.000 0.00 0.00 35.26 3.07
65 66 0.967380 GGGCCAACCACTTCTCCATG 60.967 60.000 4.39 0.00 39.85 3.66
66 67 1.142688 AGGGCCAACCACTTCTCCAT 61.143 55.000 6.18 0.00 43.89 3.41
67 68 1.774217 AGGGCCAACCACTTCTCCA 60.774 57.895 6.18 0.00 43.89 3.86
68 69 1.303643 CAGGGCCAACCACTTCTCC 60.304 63.158 6.18 0.00 43.89 3.71
69 70 1.973812 GCAGGGCCAACCACTTCTC 60.974 63.158 6.18 0.00 43.89 2.87
70 71 2.116125 GCAGGGCCAACCACTTCT 59.884 61.111 6.18 0.00 43.89 2.85
71 72 2.116125 AGCAGGGCCAACCACTTC 59.884 61.111 6.18 0.00 43.89 3.01
72 73 2.203538 CAGCAGGGCCAACCACTT 60.204 61.111 6.18 0.00 43.89 3.16
73 74 4.982701 GCAGCAGGGCCAACCACT 62.983 66.667 6.18 0.00 43.89 4.00
75 76 4.536526 TTGCAGCAGGGCCAACCA 62.537 61.111 6.18 0.00 43.89 3.67
76 77 3.994853 GTTGCAGCAGGGCCAACC 61.995 66.667 6.18 0.00 40.67 3.77
77 78 2.576832 ATGTTGCAGCAGGGCCAAC 61.577 57.895 9.71 0.00 0.00 3.77
78 79 2.203669 ATGTTGCAGCAGGGCCAA 60.204 55.556 9.71 0.00 0.00 4.52
79 80 2.992689 CATGTTGCAGCAGGGCCA 60.993 61.111 9.71 0.00 0.00 5.36
80 81 2.677524 TCATGTTGCAGCAGGGCC 60.678 61.111 15.25 0.00 0.00 5.80
81 82 1.035932 ATCTCATGTTGCAGCAGGGC 61.036 55.000 15.25 0.00 0.00 5.19
82 83 1.134367 CAATCTCATGTTGCAGCAGGG 59.866 52.381 15.25 6.99 0.00 4.45
83 84 1.816835 ACAATCTCATGTTGCAGCAGG 59.183 47.619 9.07 9.07 0.00 4.85
84 85 3.570926 AACAATCTCATGTTGCAGCAG 57.429 42.857 9.71 1.69 41.78 4.24
91 92 5.948162 AGTCCTATTGCAACAATCTCATGTT 59.052 36.000 0.00 0.00 44.08 2.71
92 93 5.503927 AGTCCTATTGCAACAATCTCATGT 58.496 37.500 0.00 0.00 34.24 3.21
93 94 6.446781 AAGTCCTATTGCAACAATCTCATG 57.553 37.500 0.00 0.00 0.00 3.07
94 95 6.258727 CGTAAGTCCTATTGCAACAATCTCAT 59.741 38.462 0.00 0.00 0.00 2.90
95 96 5.580691 CGTAAGTCCTATTGCAACAATCTCA 59.419 40.000 0.00 0.00 0.00 3.27
96 97 5.810587 TCGTAAGTCCTATTGCAACAATCTC 59.189 40.000 0.00 0.00 39.48 2.75
97 98 5.581085 GTCGTAAGTCCTATTGCAACAATCT 59.419 40.000 0.00 0.00 39.48 2.40
98 99 5.581085 AGTCGTAAGTCCTATTGCAACAATC 59.419 40.000 0.00 0.00 39.48 2.67
99 100 5.488341 AGTCGTAAGTCCTATTGCAACAAT 58.512 37.500 0.00 0.00 39.48 2.71
100 101 4.890088 AGTCGTAAGTCCTATTGCAACAA 58.110 39.130 0.00 0.00 39.48 2.83
101 102 4.530710 AGTCGTAAGTCCTATTGCAACA 57.469 40.909 0.00 0.00 39.48 3.33
102 103 5.005490 GCTAAGTCGTAAGTCCTATTGCAAC 59.995 44.000 0.00 0.00 39.48 4.17
103 104 5.107133 GCTAAGTCGTAAGTCCTATTGCAA 58.893 41.667 0.00 0.00 39.48 4.08
104 105 4.679662 GCTAAGTCGTAAGTCCTATTGCA 58.320 43.478 0.00 0.00 39.48 4.08
105 106 3.729716 CGCTAAGTCGTAAGTCCTATTGC 59.270 47.826 0.00 0.00 39.48 3.56
106 107 3.729716 GCGCTAAGTCGTAAGTCCTATTG 59.270 47.826 0.00 0.00 39.48 1.90
107 108 3.379372 TGCGCTAAGTCGTAAGTCCTATT 59.621 43.478 9.73 0.00 39.48 1.73
108 109 2.947652 TGCGCTAAGTCGTAAGTCCTAT 59.052 45.455 9.73 0.00 39.48 2.57
109 110 2.358957 TGCGCTAAGTCGTAAGTCCTA 58.641 47.619 9.73 0.00 39.48 2.94
110 111 1.171308 TGCGCTAAGTCGTAAGTCCT 58.829 50.000 9.73 0.00 39.48 3.85
111 112 2.117910 GATGCGCTAAGTCGTAAGTCC 58.882 52.381 9.73 0.00 39.48 3.85
112 113 2.784380 CTGATGCGCTAAGTCGTAAGTC 59.216 50.000 9.73 0.00 39.48 3.01
113 114 2.798680 CTGATGCGCTAAGTCGTAAGT 58.201 47.619 9.73 0.00 39.48 2.24
114 115 1.518929 GCTGATGCGCTAAGTCGTAAG 59.481 52.381 9.73 0.00 0.00 2.34
115 116 1.556564 GCTGATGCGCTAAGTCGTAA 58.443 50.000 9.73 0.00 0.00 3.18
116 117 0.248907 GGCTGATGCGCTAAGTCGTA 60.249 55.000 9.73 0.00 40.82 3.43
117 118 1.519455 GGCTGATGCGCTAAGTCGT 60.519 57.895 9.73 0.00 40.82 4.34
118 119 0.877649 ATGGCTGATGCGCTAAGTCG 60.878 55.000 9.73 0.42 40.82 4.18
119 120 0.585357 CATGGCTGATGCGCTAAGTC 59.415 55.000 9.73 5.53 40.82 3.01
120 121 0.178767 TCATGGCTGATGCGCTAAGT 59.821 50.000 9.73 0.00 40.82 2.24
121 122 0.585357 GTCATGGCTGATGCGCTAAG 59.415 55.000 9.73 4.44 40.82 2.18
122 123 0.107752 TGTCATGGCTGATGCGCTAA 60.108 50.000 9.73 0.00 40.82 3.09
123 124 0.107268 ATGTCATGGCTGATGCGCTA 59.893 50.000 9.73 0.00 40.82 4.26
124 125 0.750546 AATGTCATGGCTGATGCGCT 60.751 50.000 9.73 0.00 40.82 5.92
125 126 0.594028 CAATGTCATGGCTGATGCGC 60.594 55.000 0.00 0.00 40.82 6.09
126 127 0.594028 GCAATGTCATGGCTGATGCG 60.594 55.000 4.81 0.00 40.82 4.73
127 128 0.249322 GGCAATGTCATGGCTGATGC 60.249 55.000 12.03 12.20 42.22 3.91
128 129 0.387929 GGGCAATGTCATGGCTGATG 59.612 55.000 12.03 0.00 44.67 3.07
129 130 0.260816 AGGGCAATGTCATGGCTGAT 59.739 50.000 12.03 0.00 44.67 2.90
130 131 0.040058 AAGGGCAATGTCATGGCTGA 59.960 50.000 12.03 0.00 44.67 4.26
131 132 0.174845 CAAGGGCAATGTCATGGCTG 59.825 55.000 12.03 0.00 44.67 4.85
132 133 1.610554 GCAAGGGCAATGTCATGGCT 61.611 55.000 12.03 0.00 44.67 4.75
133 134 1.153509 GCAAGGGCAATGTCATGGC 60.154 57.895 3.30 3.30 44.56 4.40
134 135 0.974010 AGGCAAGGGCAATGTCATGG 60.974 55.000 0.00 0.00 43.71 3.66
135 136 0.174845 CAGGCAAGGGCAATGTCATG 59.825 55.000 0.00 0.00 43.71 3.07
136 137 0.974010 CCAGGCAAGGGCAATGTCAT 60.974 55.000 0.00 0.00 43.71 3.06
137 138 1.607178 CCAGGCAAGGGCAATGTCA 60.607 57.895 0.00 0.00 43.71 3.58
138 139 2.353610 CCCAGGCAAGGGCAATGTC 61.354 63.158 1.85 0.00 43.10 3.06
139 140 2.284112 CCCAGGCAAGGGCAATGT 60.284 61.111 1.85 0.00 43.10 2.71
146 147 0.912487 TACCTACACCCCAGGCAAGG 60.912 60.000 0.00 0.00 36.57 3.61
147 148 0.988832 TTACCTACACCCCAGGCAAG 59.011 55.000 0.00 0.00 36.57 4.01
148 149 1.562475 GATTACCTACACCCCAGGCAA 59.438 52.381 0.00 0.00 36.57 4.52
149 150 1.209621 GATTACCTACACCCCAGGCA 58.790 55.000 0.00 0.00 36.57 4.75
150 151 0.472898 GGATTACCTACACCCCAGGC 59.527 60.000 0.00 0.00 36.57 4.85
151 152 1.137697 GGGATTACCTACACCCCAGG 58.862 60.000 0.00 0.00 39.25 4.45
162 163 6.489361 TCTCAGATTACGACTTAGGGATTACC 59.511 42.308 0.00 0.00 40.67 2.85
163 164 7.507733 TCTCAGATTACGACTTAGGGATTAC 57.492 40.000 0.00 0.00 0.00 1.89
164 165 7.942894 TGATCTCAGATTACGACTTAGGGATTA 59.057 37.037 0.00 0.00 0.00 1.75
165 166 6.778069 TGATCTCAGATTACGACTTAGGGATT 59.222 38.462 0.00 0.00 0.00 3.01
166 167 6.307776 TGATCTCAGATTACGACTTAGGGAT 58.692 40.000 0.00 0.00 0.00 3.85
167 168 5.691896 TGATCTCAGATTACGACTTAGGGA 58.308 41.667 0.00 0.00 0.00 4.20
168 169 6.039941 AGTTGATCTCAGATTACGACTTAGGG 59.960 42.308 0.00 0.00 0.00 3.53
169 170 7.033530 AGTTGATCTCAGATTACGACTTAGG 57.966 40.000 0.00 0.00 0.00 2.69
170 171 7.136119 GGAGTTGATCTCAGATTACGACTTAG 58.864 42.308 0.00 0.00 44.40 2.18
171 172 6.602009 TGGAGTTGATCTCAGATTACGACTTA 59.398 38.462 0.00 0.00 44.40 2.24
172 173 5.419155 TGGAGTTGATCTCAGATTACGACTT 59.581 40.000 0.00 0.00 44.40 3.01
173 174 4.950475 TGGAGTTGATCTCAGATTACGACT 59.050 41.667 0.00 0.00 44.40 4.18
174 175 5.250235 TGGAGTTGATCTCAGATTACGAC 57.750 43.478 0.00 0.00 44.40 4.34
175 176 4.202060 GCTGGAGTTGATCTCAGATTACGA 60.202 45.833 0.00 0.00 44.40 3.43
176 177 4.047822 GCTGGAGTTGATCTCAGATTACG 58.952 47.826 0.00 0.00 44.40 3.18
177 178 4.141846 TGGCTGGAGTTGATCTCAGATTAC 60.142 45.833 0.00 0.00 44.40 1.89
178 179 4.033009 TGGCTGGAGTTGATCTCAGATTA 58.967 43.478 0.00 0.00 44.40 1.75
179 180 2.842496 TGGCTGGAGTTGATCTCAGATT 59.158 45.455 0.00 0.00 44.40 2.40
180 181 2.475155 TGGCTGGAGTTGATCTCAGAT 58.525 47.619 0.00 0.00 44.40 2.90
181 182 1.942776 TGGCTGGAGTTGATCTCAGA 58.057 50.000 0.00 0.00 44.40 3.27
182 183 2.354259 GTTGGCTGGAGTTGATCTCAG 58.646 52.381 0.00 0.00 44.40 3.35
183 184 1.338105 CGTTGGCTGGAGTTGATCTCA 60.338 52.381 0.00 0.00 44.40 3.27
184 185 1.363744 CGTTGGCTGGAGTTGATCTC 58.636 55.000 0.00 0.00 42.07 2.75
185 186 0.036010 CCGTTGGCTGGAGTTGATCT 60.036 55.000 0.00 0.00 0.00 2.75
186 187 1.648467 GCCGTTGGCTGGAGTTGATC 61.648 60.000 0.00 0.00 46.69 2.92
187 188 1.675641 GCCGTTGGCTGGAGTTGAT 60.676 57.895 0.00 0.00 46.69 2.57
188 189 2.281484 GCCGTTGGCTGGAGTTGA 60.281 61.111 0.00 0.00 46.69 3.18
205 206 2.365068 CGTGGTTGAGCGTCTCACG 61.365 63.158 8.73 0.00 40.46 4.35
206 207 1.007734 TCGTGGTTGAGCGTCTCAC 60.008 57.895 8.73 5.41 40.46 3.51
207 208 1.007734 GTCGTGGTTGAGCGTCTCA 60.008 57.895 5.59 5.59 38.87 3.27
208 209 0.596600 TTGTCGTGGTTGAGCGTCTC 60.597 55.000 0.58 0.58 0.00 3.36
209 210 0.874607 GTTGTCGTGGTTGAGCGTCT 60.875 55.000 0.00 0.00 0.00 4.18
210 211 0.874607 AGTTGTCGTGGTTGAGCGTC 60.875 55.000 0.00 0.00 0.00 5.19
211 212 0.874607 GAGTTGTCGTGGTTGAGCGT 60.875 55.000 0.00 0.00 0.00 5.07
212 213 0.597637 AGAGTTGTCGTGGTTGAGCG 60.598 55.000 0.00 0.00 0.00 5.03
213 214 1.140816 GAGAGTTGTCGTGGTTGAGC 58.859 55.000 0.00 0.00 0.00 4.26
214 215 1.341531 AGGAGAGTTGTCGTGGTTGAG 59.658 52.381 0.00 0.00 0.00 3.02
215 216 1.410004 AGGAGAGTTGTCGTGGTTGA 58.590 50.000 0.00 0.00 0.00 3.18
216 217 2.240493 AAGGAGAGTTGTCGTGGTTG 57.760 50.000 0.00 0.00 0.00 3.77
217 218 2.696707 TGTAAGGAGAGTTGTCGTGGTT 59.303 45.455 0.00 0.00 0.00 3.67
218 219 2.296471 CTGTAAGGAGAGTTGTCGTGGT 59.704 50.000 0.00 0.00 0.00 4.16
219 220 2.947852 CTGTAAGGAGAGTTGTCGTGG 58.052 52.381 0.00 0.00 0.00 4.94
233 234 1.263217 GTTGTGTTGTCGCCCTGTAAG 59.737 52.381 0.00 0.00 0.00 2.34
234 235 1.301423 GTTGTGTTGTCGCCCTGTAA 58.699 50.000 0.00 0.00 0.00 2.41
235 236 0.876777 CGTTGTGTTGTCGCCCTGTA 60.877 55.000 0.00 0.00 0.00 2.74
236 237 2.177580 CGTTGTGTTGTCGCCCTGT 61.178 57.895 0.00 0.00 0.00 4.00
237 238 2.631428 CGTTGTGTTGTCGCCCTG 59.369 61.111 0.00 0.00 0.00 4.45
238 239 3.276846 GCGTTGTGTTGTCGCCCT 61.277 61.111 0.00 0.00 43.41 5.19
239 240 4.659874 CGCGTTGTGTTGTCGCCC 62.660 66.667 0.00 0.00 45.85 6.13
240 241 3.558282 CTCGCGTTGTGTTGTCGCC 62.558 63.158 5.77 0.00 45.85 5.54
241 242 2.128128 CTCGCGTTGTGTTGTCGC 60.128 61.111 5.77 0.00 45.28 5.19
242 243 1.084290 CACTCGCGTTGTGTTGTCG 60.084 57.895 20.58 1.67 0.00 4.35
243 244 1.367665 GCACTCGCGTTGTGTTGTC 60.368 57.895 25.92 12.70 37.70 3.18
244 245 2.707039 GCACTCGCGTTGTGTTGT 59.293 55.556 25.92 7.21 37.70 3.32
278 279 1.001048 CTGCATATCGGGGCATTGTTG 60.001 52.381 0.00 0.00 39.65 3.33
279 280 1.321474 CTGCATATCGGGGCATTGTT 58.679 50.000 0.00 0.00 39.65 2.83
280 281 1.174712 GCTGCATATCGGGGCATTGT 61.175 55.000 0.00 0.00 39.65 2.71
281 282 1.582968 GCTGCATATCGGGGCATTG 59.417 57.895 0.00 0.00 39.65 2.82
282 283 1.968017 CGCTGCATATCGGGGCATT 60.968 57.895 0.00 0.00 39.65 3.56
283 284 2.359107 CGCTGCATATCGGGGCAT 60.359 61.111 0.00 0.00 39.65 4.40
286 287 1.446792 CTAGCGCTGCATATCGGGG 60.447 63.158 22.90 0.00 37.10 5.73
287 288 2.097038 GCTAGCGCTGCATATCGGG 61.097 63.158 22.90 0.00 0.00 5.14
288 289 2.439761 CGCTAGCGCTGCATATCGG 61.440 63.158 26.07 4.15 0.00 4.18
289 290 3.067532 CGCTAGCGCTGCATATCG 58.932 61.111 26.07 10.06 0.00 2.92
307 308 4.489771 GGATCCCCGTGGCACTGG 62.490 72.222 19.99 19.99 0.00 4.00
317 318 4.883354 CAGGCAAGCCGGATCCCC 62.883 72.222 5.05 2.27 41.95 4.81
319 320 4.496336 AGCAGGCAAGCCGGATCC 62.496 66.667 15.46 0.00 41.95 3.36
320 321 2.899339 GAGCAGGCAAGCCGGATC 60.899 66.667 15.46 14.32 39.23 3.36
321 322 4.496336 GGAGCAGGCAAGCCGGAT 62.496 66.667 15.46 8.74 41.95 4.18
332 333 4.172512 AGCATGGCGAGGGAGCAG 62.173 66.667 0.00 0.00 39.27 4.24
333 334 4.166888 GAGCATGGCGAGGGAGCA 62.167 66.667 0.00 0.00 39.27 4.26
334 335 4.925861 GGAGCATGGCGAGGGAGC 62.926 72.222 0.00 0.00 0.00 4.70
335 336 1.190833 ATAGGAGCATGGCGAGGGAG 61.191 60.000 0.00 0.00 0.00 4.30
336 337 1.152247 ATAGGAGCATGGCGAGGGA 60.152 57.895 0.00 0.00 0.00 4.20
337 338 1.294780 GATAGGAGCATGGCGAGGG 59.705 63.158 0.00 0.00 0.00 4.30
338 339 1.294780 GGATAGGAGCATGGCGAGG 59.705 63.158 0.00 0.00 0.00 4.63
339 340 1.080230 CGGATAGGAGCATGGCGAG 60.080 63.158 0.00 0.00 0.00 5.03
340 341 1.832608 ACGGATAGGAGCATGGCGA 60.833 57.895 0.00 0.00 0.00 5.54
341 342 1.665916 CACGGATAGGAGCATGGCG 60.666 63.158 0.00 0.00 0.00 5.69
342 343 1.963338 GCACGGATAGGAGCATGGC 60.963 63.158 0.00 0.00 0.00 4.40
343 344 0.320247 GAGCACGGATAGGAGCATGG 60.320 60.000 0.00 0.00 0.00 3.66
344 345 0.320247 GGAGCACGGATAGGAGCATG 60.320 60.000 0.00 0.00 0.00 4.06
345 346 1.476007 GGGAGCACGGATAGGAGCAT 61.476 60.000 0.00 0.00 0.00 3.79
346 347 2.134287 GGGAGCACGGATAGGAGCA 61.134 63.158 0.00 0.00 0.00 4.26
347 348 2.134287 TGGGAGCACGGATAGGAGC 61.134 63.158 0.00 0.00 0.00 4.70
348 349 0.757188 AGTGGGAGCACGGATAGGAG 60.757 60.000 0.00 0.00 0.00 3.69
349 350 0.755698 GAGTGGGAGCACGGATAGGA 60.756 60.000 0.00 0.00 0.00 2.94
350 351 1.742768 GAGTGGGAGCACGGATAGG 59.257 63.158 0.00 0.00 0.00 2.57
351 352 1.043116 TGGAGTGGGAGCACGGATAG 61.043 60.000 0.00 0.00 0.00 2.08
352 353 0.398522 ATGGAGTGGGAGCACGGATA 60.399 55.000 0.00 0.00 0.00 2.59
353 354 1.690219 GATGGAGTGGGAGCACGGAT 61.690 60.000 0.00 0.00 0.00 4.18
354 355 2.284625 ATGGAGTGGGAGCACGGA 60.285 61.111 0.00 0.00 0.00 4.69
355 356 2.187946 GATGGAGTGGGAGCACGG 59.812 66.667 0.00 0.00 0.00 4.94
356 357 1.043116 TAGGATGGAGTGGGAGCACG 61.043 60.000 0.00 0.00 0.00 5.34
357 358 0.466124 GTAGGATGGAGTGGGAGCAC 59.534 60.000 0.00 0.00 0.00 4.40
358 359 1.043116 CGTAGGATGGAGTGGGAGCA 61.043 60.000 0.00 0.00 0.00 4.26
359 360 1.742768 CGTAGGATGGAGTGGGAGC 59.257 63.158 0.00 0.00 0.00 4.70
373 374 2.104170 AGGAGAAAAGGAGAGCCGTAG 58.896 52.381 0.00 0.00 39.96 3.51
374 375 2.233305 AGGAGAAAAGGAGAGCCGTA 57.767 50.000 0.00 0.00 39.96 4.02
375 376 1.353091 AAGGAGAAAAGGAGAGCCGT 58.647 50.000 0.00 0.00 39.96 5.68
376 377 2.481289 AAAGGAGAAAAGGAGAGCCG 57.519 50.000 0.00 0.00 39.96 5.52
377 378 4.402829 AGAAAAAGGAGAAAAGGAGAGCC 58.597 43.478 0.00 0.00 0.00 4.70
378 379 6.264292 AGAAAGAAAAAGGAGAAAAGGAGAGC 59.736 38.462 0.00 0.00 0.00 4.09
379 380 7.815840 AGAAAGAAAAAGGAGAAAAGGAGAG 57.184 36.000 0.00 0.00 0.00 3.20
380 381 9.868160 ATTAGAAAGAAAAAGGAGAAAAGGAGA 57.132 29.630 0.00 0.00 0.00 3.71
382 383 9.868160 AGATTAGAAAGAAAAAGGAGAAAAGGA 57.132 29.630 0.00 0.00 0.00 3.36
396 397 8.875168 GGAGGGAGATGATTAGATTAGAAAGAA 58.125 37.037 0.00 0.00 0.00 2.52
397 398 7.456269 GGGAGGGAGATGATTAGATTAGAAAGA 59.544 40.741 0.00 0.00 0.00 2.52
398 399 7.457535 AGGGAGGGAGATGATTAGATTAGAAAG 59.542 40.741 0.00 0.00 0.00 2.62
399 400 7.236432 CAGGGAGGGAGATGATTAGATTAGAAA 59.764 40.741 0.00 0.00 0.00 2.52
400 401 6.728164 CAGGGAGGGAGATGATTAGATTAGAA 59.272 42.308 0.00 0.00 0.00 2.10
401 402 6.047240 TCAGGGAGGGAGATGATTAGATTAGA 59.953 42.308 0.00 0.00 0.00 2.10
402 403 6.259893 TCAGGGAGGGAGATGATTAGATTAG 58.740 44.000 0.00 0.00 0.00 1.73
403 404 6.233045 TCAGGGAGGGAGATGATTAGATTA 57.767 41.667 0.00 0.00 0.00 1.75
404 405 5.098575 TCAGGGAGGGAGATGATTAGATT 57.901 43.478 0.00 0.00 0.00 2.40
405 406 4.774243 TCAGGGAGGGAGATGATTAGAT 57.226 45.455 0.00 0.00 0.00 1.98
406 407 4.774243 ATCAGGGAGGGAGATGATTAGA 57.226 45.455 0.00 0.00 0.00 2.10
407 408 5.839517 AAATCAGGGAGGGAGATGATTAG 57.160 43.478 0.15 0.00 40.54 1.73
408 409 7.202223 CCTTAAAATCAGGGAGGGAGATGATTA 60.202 40.741 0.15 0.00 40.54 1.75
409 410 6.411320 CCTTAAAATCAGGGAGGGAGATGATT 60.411 42.308 0.00 0.00 42.61 2.57
410 411 5.074239 CCTTAAAATCAGGGAGGGAGATGAT 59.926 44.000 0.00 0.00 33.91 2.45
411 412 4.413520 CCTTAAAATCAGGGAGGGAGATGA 59.586 45.833 0.00 0.00 0.00 2.92
412 413 4.723309 CCTTAAAATCAGGGAGGGAGATG 58.277 47.826 0.00 0.00 0.00 2.90
422 423 3.225940 GCTCCATCCCCTTAAAATCAGG 58.774 50.000 0.00 0.00 0.00 3.86
423 424 3.225940 GGCTCCATCCCCTTAAAATCAG 58.774 50.000 0.00 0.00 0.00 2.90
424 425 2.422803 CGGCTCCATCCCCTTAAAATCA 60.423 50.000 0.00 0.00 0.00 2.57
425 426 2.230660 CGGCTCCATCCCCTTAAAATC 58.769 52.381 0.00 0.00 0.00 2.17
426 427 1.133482 CCGGCTCCATCCCCTTAAAAT 60.133 52.381 0.00 0.00 0.00 1.82
427 428 0.257616 CCGGCTCCATCCCCTTAAAA 59.742 55.000 0.00 0.00 0.00 1.52
428 429 1.641552 CCCGGCTCCATCCCCTTAAA 61.642 60.000 0.00 0.00 0.00 1.52
429 430 2.076184 CCCGGCTCCATCCCCTTAA 61.076 63.158 0.00 0.00 0.00 1.85
430 431 2.447765 CCCGGCTCCATCCCCTTA 60.448 66.667 0.00 0.00 0.00 2.69
435 436 2.069165 AATAAGGCCCGGCTCCATCC 62.069 60.000 9.86 0.00 0.00 3.51
436 437 0.178990 AAATAAGGCCCGGCTCCATC 60.179 55.000 9.86 0.00 0.00 3.51
437 438 0.261696 AAAATAAGGCCCGGCTCCAT 59.738 50.000 9.86 4.17 0.00 3.41
438 439 0.682855 CAAAATAAGGCCCGGCTCCA 60.683 55.000 9.86 0.00 0.00 3.86
439 440 0.683179 ACAAAATAAGGCCCGGCTCC 60.683 55.000 9.86 0.00 0.00 4.70
440 441 1.134367 GAACAAAATAAGGCCCGGCTC 59.866 52.381 9.86 0.00 0.00 4.70
441 442 1.182667 GAACAAAATAAGGCCCGGCT 58.817 50.000 9.86 0.00 0.00 5.52
442 443 0.174845 GGAACAAAATAAGGCCCGGC 59.825 55.000 0.00 0.00 0.00 6.13
443 444 1.551452 TGGAACAAAATAAGGCCCGG 58.449 50.000 0.00 0.00 31.92 5.73
456 457 3.190327 CGTGGCATGATTTAGTTGGAACA 59.810 43.478 0.00 0.00 0.00 3.18
457 458 3.190535 ACGTGGCATGATTTAGTTGGAAC 59.809 43.478 14.82 0.00 0.00 3.62
458 459 3.417101 ACGTGGCATGATTTAGTTGGAA 58.583 40.909 14.82 0.00 0.00 3.53
459 460 3.066291 ACGTGGCATGATTTAGTTGGA 57.934 42.857 14.82 0.00 0.00 3.53
460 461 4.789481 GCATACGTGGCATGATTTAGTTGG 60.789 45.833 14.82 0.00 0.00 3.77
461 462 4.282068 GCATACGTGGCATGATTTAGTTG 58.718 43.478 14.82 1.54 0.00 3.16
462 463 3.002246 CGCATACGTGGCATGATTTAGTT 59.998 43.478 14.82 0.00 33.53 2.24
463 464 2.543848 CGCATACGTGGCATGATTTAGT 59.456 45.455 14.82 0.00 33.53 2.24
464 465 2.799978 TCGCATACGTGGCATGATTTAG 59.200 45.455 14.82 2.05 41.18 1.85
465 466 2.799978 CTCGCATACGTGGCATGATTTA 59.200 45.455 14.82 0.00 41.18 1.40
466 467 1.599071 CTCGCATACGTGGCATGATTT 59.401 47.619 14.82 0.00 41.18 2.17
467 468 1.202521 TCTCGCATACGTGGCATGATT 60.203 47.619 14.82 0.00 41.18 2.57
468 469 0.389025 TCTCGCATACGTGGCATGAT 59.611 50.000 14.82 0.00 41.18 2.45
469 470 0.249031 CTCTCGCATACGTGGCATGA 60.249 55.000 14.82 9.32 41.18 3.07
470 471 1.825285 GCTCTCGCATACGTGGCATG 61.825 60.000 4.87 4.87 41.18 4.06
471 472 1.592669 GCTCTCGCATACGTGGCAT 60.593 57.895 13.38 0.00 41.18 4.40
472 473 2.202743 GCTCTCGCATACGTGGCA 60.203 61.111 13.38 0.00 41.18 4.92
473 474 2.202743 TGCTCTCGCATACGTGGC 60.203 61.111 0.00 0.21 42.25 5.01
481 482 4.147449 CCCATCCGTGCTCTCGCA 62.147 66.667 0.00 0.00 45.60 5.10
482 483 3.781770 CTCCCATCCGTGCTCTCGC 62.782 68.421 0.00 0.00 0.00 5.03
483 484 2.415010 CTCCCATCCGTGCTCTCG 59.585 66.667 0.00 0.00 0.00 4.04
484 485 2.107953 GCTCCCATCCGTGCTCTC 59.892 66.667 0.00 0.00 0.00 3.20
485 486 2.685017 TGCTCCCATCCGTGCTCT 60.685 61.111 0.00 0.00 0.00 4.09
486 487 2.512515 GTGCTCCCATCCGTGCTC 60.513 66.667 0.00 0.00 0.00 4.26
487 488 4.457496 CGTGCTCCCATCCGTGCT 62.457 66.667 0.00 0.00 0.00 4.40
489 490 4.457496 AGCGTGCTCCCATCCGTG 62.457 66.667 0.00 0.00 0.00 4.94
490 491 4.457496 CAGCGTGCTCCCATCCGT 62.457 66.667 0.00 0.00 0.00 4.69
492 493 4.864334 CCCAGCGTGCTCCCATCC 62.864 72.222 0.00 0.00 0.00 3.51
493 494 4.864334 CCCCAGCGTGCTCCCATC 62.864 72.222 0.00 0.00 0.00 3.51
505 506 3.635268 GACTTGCCTGCTCCCCCAG 62.635 68.421 0.00 0.00 0.00 4.45
506 507 3.650950 GACTTGCCTGCTCCCCCA 61.651 66.667 0.00 0.00 0.00 4.96
507 508 3.334054 AGACTTGCCTGCTCCCCC 61.334 66.667 0.00 0.00 0.00 5.40
508 509 2.270527 GAGACTTGCCTGCTCCCC 59.729 66.667 0.00 0.00 0.00 4.81
509 510 2.125350 CGAGACTTGCCTGCTCCC 60.125 66.667 0.00 0.00 0.00 4.30
510 511 1.446966 GACGAGACTTGCCTGCTCC 60.447 63.158 0.00 0.00 0.00 4.70
511 512 1.446966 GGACGAGACTTGCCTGCTC 60.447 63.158 0.00 0.00 0.00 4.26
512 513 2.659610 GGACGAGACTTGCCTGCT 59.340 61.111 0.00 0.00 0.00 4.24
513 514 2.811317 CGGACGAGACTTGCCTGC 60.811 66.667 0.00 0.00 0.00 4.85
514 515 1.734477 CACGGACGAGACTTGCCTG 60.734 63.158 0.00 0.00 0.00 4.85
515 516 2.651361 CACGGACGAGACTTGCCT 59.349 61.111 0.00 0.00 0.00 4.75
516 517 3.112709 GCACGGACGAGACTTGCC 61.113 66.667 0.00 0.00 0.00 4.52
517 518 3.112709 GGCACGGACGAGACTTGC 61.113 66.667 0.00 0.00 0.00 4.01
518 519 2.022129 GTGGCACGGACGAGACTTG 61.022 63.158 0.00 0.00 0.00 3.16
519 520 2.338984 GTGGCACGGACGAGACTT 59.661 61.111 0.00 0.00 0.00 3.01
520 521 4.039357 CGTGGCACGGACGAGACT 62.039 66.667 31.19 0.00 39.21 3.24
530 531 3.136123 ATGCATGCTCCGTGGCAC 61.136 61.111 20.33 7.79 45.36 5.01
531 532 3.135457 CATGCATGCTCCGTGGCA 61.135 61.111 20.33 2.18 46.63 4.92
541 542 1.385756 TTCGTGGGGATGCATGCATG 61.386 55.000 36.73 22.70 36.70 4.06
542 543 1.076850 TTCGTGGGGATGCATGCAT 60.077 52.632 32.66 32.66 39.69 3.96
543 544 1.750018 CTTCGTGGGGATGCATGCA 60.750 57.895 25.04 25.04 0.00 3.96
544 545 1.031571 TTCTTCGTGGGGATGCATGC 61.032 55.000 11.82 11.82 0.00 4.06
545 546 1.019673 CTTCTTCGTGGGGATGCATG 58.980 55.000 2.46 0.00 0.00 4.06
546 547 0.620556 ACTTCTTCGTGGGGATGCAT 59.379 50.000 0.00 0.00 0.00 3.96
547 548 0.036388 GACTTCTTCGTGGGGATGCA 60.036 55.000 0.00 0.00 0.00 3.96
548 549 1.084370 CGACTTCTTCGTGGGGATGC 61.084 60.000 0.00 0.00 43.24 3.91
549 550 3.050703 CGACTTCTTCGTGGGGATG 57.949 57.895 0.00 0.00 43.24 3.51
558 559 3.028366 GCTTGCCGCCGACTTCTTC 62.028 63.158 0.00 0.00 0.00 2.87
559 560 3.050275 GCTTGCCGCCGACTTCTT 61.050 61.111 0.00 0.00 0.00 2.52
560 561 4.314440 TGCTTGCCGCCGACTTCT 62.314 61.111 0.00 0.00 38.05 2.85
561 562 4.090057 GTGCTTGCCGCCGACTTC 62.090 66.667 0.00 0.00 38.05 3.01
582 583 1.968050 TTAGGGAAGTGGCCGCTAGC 61.968 60.000 21.55 14.75 42.60 3.42
583 584 0.539986 TTTAGGGAAGTGGCCGCTAG 59.460 55.000 21.55 0.00 32.01 3.42
584 585 1.209621 ATTTAGGGAAGTGGCCGCTA 58.790 50.000 21.55 1.39 0.00 4.26
585 586 0.331616 AATTTAGGGAAGTGGCCGCT 59.668 50.000 14.67 14.67 0.00 5.52
586 587 0.455815 CAATTTAGGGAAGTGGCCGC 59.544 55.000 8.71 8.71 29.96 6.53
587 588 1.102978 CCAATTTAGGGAAGTGGCCG 58.897 55.000 0.00 0.00 45.42 6.13
591 592 1.472480 CGCCACCAATTTAGGGAAGTG 59.528 52.381 0.00 0.00 33.27 3.16
592 593 1.353022 TCGCCACCAATTTAGGGAAGT 59.647 47.619 0.00 0.00 0.00 3.01
593 594 1.743394 GTCGCCACCAATTTAGGGAAG 59.257 52.381 0.00 0.00 0.00 3.46
594 595 1.828979 GTCGCCACCAATTTAGGGAA 58.171 50.000 0.00 0.00 0.00 3.97
595 596 0.391927 CGTCGCCACCAATTTAGGGA 60.392 55.000 0.00 0.00 0.00 4.20
596 597 1.373590 CCGTCGCCACCAATTTAGGG 61.374 60.000 0.00 0.00 0.00 3.53
597 598 1.988834 GCCGTCGCCACCAATTTAGG 61.989 60.000 0.00 0.00 0.00 2.69
598 599 1.427819 GCCGTCGCCACCAATTTAG 59.572 57.895 0.00 0.00 0.00 1.85
599 600 3.580916 GCCGTCGCCACCAATTTA 58.419 55.556 0.00 0.00 0.00 1.40
616 617 2.580326 GCATCGTTGCCGCATTGG 60.580 61.111 7.24 0.00 43.38 3.16
632 633 2.875933 CCAAATTGATTCATGCATGGGC 59.124 45.455 25.97 15.48 41.68 5.36
633 634 4.145365 ACCAAATTGATTCATGCATGGG 57.855 40.909 25.97 17.26 0.00 4.00
634 635 4.938832 ACAACCAAATTGATTCATGCATGG 59.061 37.500 25.97 10.38 41.23 3.66
635 636 5.872617 AGACAACCAAATTGATTCATGCATG 59.127 36.000 21.07 21.07 41.23 4.06
636 637 6.045072 AGACAACCAAATTGATTCATGCAT 57.955 33.333 0.00 0.00 41.23 3.96
637 638 5.471556 AGACAACCAAATTGATTCATGCA 57.528 34.783 0.00 0.00 41.23 3.96
638 639 6.790285 AAAGACAACCAAATTGATTCATGC 57.210 33.333 0.00 0.00 41.23 4.06
639 640 8.065407 CACAAAAGACAACCAAATTGATTCATG 58.935 33.333 0.00 0.00 41.23 3.07
640 641 7.986320 TCACAAAAGACAACCAAATTGATTCAT 59.014 29.630 0.00 0.00 41.23 2.57
641 642 7.326454 TCACAAAAGACAACCAAATTGATTCA 58.674 30.769 0.00 0.00 41.23 2.57
642 643 7.769272 TCACAAAAGACAACCAAATTGATTC 57.231 32.000 0.00 0.00 41.23 2.52
643 644 8.735692 AATCACAAAAGACAACCAAATTGATT 57.264 26.923 0.00 0.00 41.23 2.57
645 646 9.829507 AATAATCACAAAAGACAACCAAATTGA 57.170 25.926 0.00 0.00 41.23 2.57
648 649 9.423061 GCTAATAATCACAAAAGACAACCAAAT 57.577 29.630 0.00 0.00 0.00 2.32
649 650 8.417106 TGCTAATAATCACAAAAGACAACCAAA 58.583 29.630 0.00 0.00 0.00 3.28
650 651 7.946207 TGCTAATAATCACAAAAGACAACCAA 58.054 30.769 0.00 0.00 0.00 3.67
651 652 7.446931 TCTGCTAATAATCACAAAAGACAACCA 59.553 33.333 0.00 0.00 0.00 3.67
652 653 7.816640 TCTGCTAATAATCACAAAAGACAACC 58.183 34.615 0.00 0.00 0.00 3.77
653 654 7.965107 CCTCTGCTAATAATCACAAAAGACAAC 59.035 37.037 0.00 0.00 0.00 3.32
654 655 7.665559 ACCTCTGCTAATAATCACAAAAGACAA 59.334 33.333 0.00 0.00 0.00 3.18
655 656 7.168219 ACCTCTGCTAATAATCACAAAAGACA 58.832 34.615 0.00 0.00 0.00 3.41
656 657 7.550906 AGACCTCTGCTAATAATCACAAAAGAC 59.449 37.037 0.00 0.00 0.00 3.01
657 658 7.624549 AGACCTCTGCTAATAATCACAAAAGA 58.375 34.615 0.00 0.00 0.00 2.52
658 659 7.856145 AGACCTCTGCTAATAATCACAAAAG 57.144 36.000 0.00 0.00 0.00 2.27
659 660 9.905713 ATTAGACCTCTGCTAATAATCACAAAA 57.094 29.630 0.00 0.00 36.93 2.44
660 661 9.547753 GATTAGACCTCTGCTAATAATCACAAA 57.452 33.333 0.00 0.00 38.35 2.83
661 662 8.704668 TGATTAGACCTCTGCTAATAATCACAA 58.295 33.333 0.00 0.00 38.35 3.33
662 663 8.250143 TGATTAGACCTCTGCTAATAATCACA 57.750 34.615 0.00 0.00 38.35 3.58
663 664 9.149225 CATGATTAGACCTCTGCTAATAATCAC 57.851 37.037 7.40 0.00 40.47 3.06
664 665 8.874156 ACATGATTAGACCTCTGCTAATAATCA 58.126 33.333 0.00 7.62 41.35 2.57
667 668 9.368416 AGTACATGATTAGACCTCTGCTAATAA 57.632 33.333 0.00 0.00 38.35 1.40
668 669 8.941995 AGTACATGATTAGACCTCTGCTAATA 57.058 34.615 0.00 0.00 38.35 0.98
669 670 7.039363 GGAGTACATGATTAGACCTCTGCTAAT 60.039 40.741 0.00 0.00 40.30 1.73
670 671 6.265649 GGAGTACATGATTAGACCTCTGCTAA 59.734 42.308 0.00 0.00 32.87 3.09
671 672 5.770663 GGAGTACATGATTAGACCTCTGCTA 59.229 44.000 0.00 0.00 0.00 3.49
672 673 4.586841 GGAGTACATGATTAGACCTCTGCT 59.413 45.833 0.00 0.00 0.00 4.24
673 674 4.262249 GGGAGTACATGATTAGACCTCTGC 60.262 50.000 0.00 0.00 0.00 4.26
674 675 5.144100 AGGGAGTACATGATTAGACCTCTG 58.856 45.833 0.00 0.00 0.00 3.35
675 676 5.390387 GAGGGAGTACATGATTAGACCTCT 58.610 45.833 0.00 0.00 39.04 3.69
676 677 4.525100 GGAGGGAGTACATGATTAGACCTC 59.475 50.000 0.00 8.92 40.86 3.85
677 678 4.484912 GGAGGGAGTACATGATTAGACCT 58.515 47.826 0.00 0.00 0.00 3.85
678 679 3.256136 CGGAGGGAGTACATGATTAGACC 59.744 52.174 0.00 0.00 0.00 3.85
679 680 3.890147 ACGGAGGGAGTACATGATTAGAC 59.110 47.826 0.00 0.00 0.00 2.59
680 681 4.142790 GACGGAGGGAGTACATGATTAGA 58.857 47.826 0.00 0.00 0.00 2.10
681 682 3.256136 GGACGGAGGGAGTACATGATTAG 59.744 52.174 0.00 0.00 0.00 1.73
682 683 3.228453 GGACGGAGGGAGTACATGATTA 58.772 50.000 0.00 0.00 0.00 1.75
683 684 2.040178 GGACGGAGGGAGTACATGATT 58.960 52.381 0.00 0.00 0.00 2.57
684 685 1.705873 GGACGGAGGGAGTACATGAT 58.294 55.000 0.00 0.00 0.00 2.45
685 686 0.396695 GGGACGGAGGGAGTACATGA 60.397 60.000 0.00 0.00 0.00 3.07
686 687 2.125178 GGGACGGAGGGAGTACATG 58.875 63.158 0.00 0.00 0.00 3.21
687 688 4.701286 GGGACGGAGGGAGTACAT 57.299 61.111 0.00 0.00 0.00 2.29
983 988 2.102757 GCCATCAGAGAGCAGATTGAGA 59.897 50.000 0.00 0.00 0.00 3.27
987 992 0.106335 CCGCCATCAGAGAGCAGATT 59.894 55.000 0.00 0.00 0.00 2.40
1132 1141 1.609210 CTTTGGGTTGGGCGGGAAT 60.609 57.895 0.00 0.00 0.00 3.01
1540 2518 1.209019 AGACCTGCAGAGCCACAATAG 59.791 52.381 17.39 0.00 0.00 1.73
1600 2578 1.958205 AGAGCACTTGTGCACGAGC 60.958 57.895 30.31 20.05 42.57 5.03
1921 2922 1.596954 CCACGCTCACCAAGAAAAACG 60.597 52.381 0.00 0.00 0.00 3.60
1935 2936 1.733526 GCTGTTCCAAAACCACGCT 59.266 52.632 0.00 0.00 34.28 5.07
2169 3646 9.121658 CCACTAACAAGACAGACATCTAGTATA 57.878 37.037 0.00 0.00 0.00 1.47
2429 4505 5.304101 TGTTGACTTGATGCCTAACCAAAAT 59.696 36.000 0.00 0.00 0.00 1.82
3261 8342 6.125029 ACAGCTACTCTGCATATTTTCCAAT 58.875 36.000 0.00 0.00 46.76 3.16
3502 11897 8.674607 CCTTGTATATAAACTCCTTGTTGGAAC 58.325 37.037 0.00 0.00 45.63 3.62
3871 14279 9.162764 ACATATTAAAACGTTAAGACTGCTGAT 57.837 29.630 0.00 0.00 32.76 2.90
4003 14417 4.686191 TTGTGCATGGTTCTTTCCAAAT 57.314 36.364 0.00 0.00 41.09 2.32
4136 14576 6.012658 TGCTACCTGACAATTTGTGAAATC 57.987 37.500 6.80 0.00 0.00 2.17
4553 16073 1.699656 CGATTCCACCTTGAGCTGCG 61.700 60.000 0.00 0.00 0.00 5.18
4569 16089 2.755876 TCCTCGTGCTCCTGCGAT 60.756 61.111 0.00 0.00 43.34 4.58
4656 16178 2.124860 GGATTACCTGCGGGCGTT 60.125 61.111 12.89 0.00 35.63 4.84


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.