Multiple sequence alignment - TraesCS2A01G588300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G588300 chr2A 100.000 6319 0 0 1 6319 777628282 777621964 0.000000e+00 11670.0
1 TraesCS2A01G588300 chr2A 85.253 2136 296 14 3438 5566 777809603 777807480 0.000000e+00 2182.0
2 TraesCS2A01G588300 chr2A 82.191 1999 301 33 3310 5285 777837042 777835076 0.000000e+00 1668.0
3 TraesCS2A01G588300 chr2A 79.545 1892 323 40 3431 5291 777614776 777612918 0.000000e+00 1291.0
4 TraesCS2A01G588300 chr2A 80.171 817 96 22 2231 3021 777837898 777837122 9.260000e-153 551.0
5 TraesCS2A01G588300 chr2A 82.797 622 57 26 989 1588 777812677 777812084 1.570000e-140 510.0
6 TraesCS2A01G588300 chr2A 83.183 553 61 23 990 1531 777839192 777838661 1.590000e-130 477.0
7 TraesCS2A01G588300 chr2A 96.216 185 4 1 991 1175 777615950 777615769 3.700000e-77 300.0
8 TraesCS2A01G588300 chr2A 76.432 611 99 25 4774 5352 777902835 777903432 8.020000e-74 289.0
9 TraesCS2A01G588300 chr2A 79.592 196 29 5 1081 1272 778798099 778798287 5.140000e-26 130.0
10 TraesCS2A01G588300 chr2A 91.429 70 4 2 1297 1364 777810924 777810855 1.880000e-15 95.3
11 TraesCS2A01G588300 chr2A 76.471 187 32 9 994 1177 723061001 723061178 2.430000e-14 91.6
12 TraesCS2A01G588300 chr2A 86.207 87 5 4 5686 5765 777807400 777807314 3.140000e-13 87.9
13 TraesCS2A01G588300 chr2A 93.333 60 3 1 2488 2547 778798567 778798625 3.140000e-13 87.9
14 TraesCS2A01G588300 chr2A 93.617 47 1 2 2618 2662 777974685 777974731 1.140000e-07 69.4
15 TraesCS2A01G588300 chr2A 92.105 38 3 0 6023 6060 130799621 130799658 3.000000e-03 54.7
16 TraesCS2A01G588300 chr2D 95.407 2700 112 11 3334 6023 635164234 635166931 0.000000e+00 4289.0
17 TraesCS2A01G588300 chr2D 94.252 1879 69 14 271 2144 635160604 635162448 0.000000e+00 2835.0
18 TraesCS2A01G588300 chr2D 80.383 1881 318 35 3450 5302 635205734 635207591 0.000000e+00 1382.0
19 TraesCS2A01G588300 chr2D 93.396 530 29 4 2136 2662 635163209 635163735 0.000000e+00 780.0
20 TraesCS2A01G588300 chr2D 95.642 436 17 2 2669 3102 635163777 635164212 0.000000e+00 699.0
21 TraesCS2A01G588300 chr2D 94.231 260 15 0 6060 6319 635167716 635167975 1.280000e-106 398.0
22 TraesCS2A01G588300 chr2D 78.832 274 21 17 910 1175 635203951 635204195 3.950000e-32 150.0
23 TraesCS2A01G588300 chr2B 94.316 2252 118 8 3310 5554 779253783 779256031 0.000000e+00 3441.0
24 TraesCS2A01G588300 chr2B 93.939 1848 81 9 3635 5463 779151067 779149232 0.000000e+00 2763.0
25 TraesCS2A01G588300 chr2B 85.996 2435 180 69 315 2639 779250672 779253055 0.000000e+00 2459.0
26 TraesCS2A01G588300 chr2B 85.960 2272 300 15 3310 5566 779181833 779184100 0.000000e+00 2410.0
27 TraesCS2A01G588300 chr2B 79.124 1279 159 64 910 2124 779179129 779180363 0.000000e+00 784.0
28 TraesCS2A01G588300 chr2B 85.185 459 42 15 2680 3127 779253060 779253503 1.250000e-121 448.0
29 TraesCS2A01G588300 chr2B 92.553 188 12 1 5838 6023 779256100 779256287 1.040000e-67 268.0
30 TraesCS2A01G588300 chr2B 85.405 185 12 7 991 1175 779259487 779259656 1.810000e-40 178.0
31 TraesCS2A01G588300 chr2B 98.246 57 1 0 5967 6023 779148887 779148831 4.030000e-17 100.0
32 TraesCS2A01G588300 chr2B 97.778 45 0 1 5556 5599 779148937 779148893 6.790000e-10 76.8
33 TraesCS2A01G588300 chr2B 97.500 40 1 0 6022 6061 470524175 470524136 1.140000e-07 69.4
34 TraesCS2A01G588300 chr2B 100.000 30 0 0 6033 6062 17596667 17596638 8.850000e-04 56.5
35 TraesCS2A01G588300 chr2B 91.892 37 3 0 6023 6059 177600416 177600452 1.100000e-02 52.8
36 TraesCS2A01G588300 chr4B 72.120 434 93 18 3446 3868 647623918 647624334 8.660000e-19 106.0
37 TraesCS2A01G588300 chr4B 97.561 41 1 0 6022 6062 58065328 58065368 3.160000e-08 71.3
38 TraesCS2A01G588300 chr6B 97.561 41 1 0 6022 6062 706443986 706444026 3.160000e-08 71.3
39 TraesCS2A01G588300 chr6B 97.561 41 1 0 6022 6062 706529064 706529104 3.160000e-08 71.3
40 TraesCS2A01G588300 chr1D 97.561 41 1 0 6022 6062 460436642 460436602 3.160000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G588300 chr2A 777621964 777628282 6318 True 11670.000000 11670 100.000000 1 6319 1 chr2A.!!$R1 6318
1 TraesCS2A01G588300 chr2A 777835076 777839192 4116 True 898.666667 1668 81.848333 990 5285 3 chr2A.!!$R4 4295
2 TraesCS2A01G588300 chr2A 777612918 777615950 3032 True 795.500000 1291 87.880500 991 5291 2 chr2A.!!$R2 4300
3 TraesCS2A01G588300 chr2A 777807314 777812677 5363 True 718.800000 2182 86.421500 989 5765 4 chr2A.!!$R3 4776
4 TraesCS2A01G588300 chr2A 777902835 777903432 597 False 289.000000 289 76.432000 4774 5352 1 chr2A.!!$F3 578
5 TraesCS2A01G588300 chr2D 635160604 635167975 7371 False 1800.200000 4289 94.585600 271 6319 5 chr2D.!!$F1 6048
6 TraesCS2A01G588300 chr2D 635203951 635207591 3640 False 766.000000 1382 79.607500 910 5302 2 chr2D.!!$F2 4392
7 TraesCS2A01G588300 chr2B 779179129 779184100 4971 False 1597.000000 2410 82.542000 910 5566 2 chr2B.!!$F2 4656
8 TraesCS2A01G588300 chr2B 779250672 779259656 8984 False 1358.800000 3441 88.691000 315 6023 5 chr2B.!!$F3 5708
9 TraesCS2A01G588300 chr2B 779148831 779151067 2236 True 979.933333 2763 96.654333 3635 6023 3 chr2B.!!$R3 2388

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
113 114 0.037975 GAACGTTCCGGAGTGCCTAA 60.038 55.0 17.68 0.00 0.00 2.69 F
177 178 0.112412 AGGCCTGTCCGGACATTTTT 59.888 50.0 36.21 19.80 46.64 1.94 F
377 383 0.179094 TTCAATACTAGGTGCGCCCG 60.179 55.0 14.07 7.21 38.74 6.13 F
520 534 0.325933 CCTTGTCAGGATCAGCCACA 59.674 55.0 0.00 0.00 44.19 4.17 F
693 707 0.470833 ATATCCGCACCTGCCTCTCT 60.471 55.0 0.00 0.00 37.91 3.10 F
724 738 0.984230 TCTTCTCCGGCCAGAATGTT 59.016 50.0 2.24 0.00 31.84 2.71 F
2768 5531 0.250295 GGCAGCACTGGACAACACTA 60.250 55.0 0.00 0.00 0.00 2.74 F
3130 6045 0.247460 CTCGTGGGATCAGCAGTCAA 59.753 55.0 0.00 0.00 0.00 3.18 F
3197 7205 0.254747 TAGGAGGTTGGGCAAATCGG 59.745 55.0 0.00 0.00 0.00 4.18 F
4925 9120 0.103572 ACTTGTGTACCTCGCGTTGT 59.896 50.0 5.77 7.29 0.00 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1397 1590 0.179134 AAGCACACTACTCGATCGGC 60.179 55.000 16.41 7.95 0.00 5.54 R
1613 1830 1.345741 GGATCCCTCTCGCAATCATGA 59.654 52.381 0.00 0.00 0.00 3.07 R
1744 2029 2.223433 CGAGGCTTTGCAAATGAGGATC 60.223 50.000 13.23 4.87 0.00 3.36 R
2458 5170 2.542595 GACAGTATAATTGTTCCCCGCG 59.457 50.000 0.00 0.00 0.00 6.46 R
2591 5306 2.734606 TCTTGTGTGCGTAGTATGTTGC 59.265 45.455 0.00 0.00 0.00 4.17 R
2786 5549 7.907214 ACAGTTAGCTCCAATAGTTAAAGTG 57.093 36.000 0.00 0.00 33.29 3.16 R
4117 8255 0.529378 CCGCGTAGTAGTCTTGGGTT 59.471 55.000 4.92 0.00 0.00 4.11 R
4658 8847 1.005924 CATAGCTTTTGGGGGTCCAGT 59.994 52.381 0.00 0.00 45.04 4.00 R
5144 9380 2.854076 CCCCCACCTCCAAAGCTT 59.146 61.111 0.00 0.00 0.00 3.74 R
6135 11349 0.104855 ATCGCGTGTGATATGGCTGT 59.895 50.000 5.77 0.00 0.00 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.321718 ACTCTAATCGGCATGAATGATGG 58.678 43.478 0.00 0.00 31.99 3.51
27 28 3.859650 GGCATGAATGATGGCGAAG 57.140 52.632 0.00 0.00 46.72 3.79
28 29 0.313043 GGCATGAATGATGGCGAAGG 59.687 55.000 0.00 0.00 46.72 3.46
29 30 0.313043 GCATGAATGATGGCGAAGGG 59.687 55.000 0.00 0.00 31.99 3.95
30 31 1.683943 CATGAATGATGGCGAAGGGT 58.316 50.000 0.00 0.00 0.00 4.34
31 32 2.026641 CATGAATGATGGCGAAGGGTT 58.973 47.619 0.00 0.00 0.00 4.11
32 33 3.213506 CATGAATGATGGCGAAGGGTTA 58.786 45.455 0.00 0.00 0.00 2.85
33 34 3.576078 TGAATGATGGCGAAGGGTTAT 57.424 42.857 0.00 0.00 0.00 1.89
34 35 4.698201 TGAATGATGGCGAAGGGTTATA 57.302 40.909 0.00 0.00 0.00 0.98
35 36 5.042463 TGAATGATGGCGAAGGGTTATAA 57.958 39.130 0.00 0.00 0.00 0.98
36 37 5.441500 TGAATGATGGCGAAGGGTTATAAA 58.558 37.500 0.00 0.00 0.00 1.40
37 38 5.888724 TGAATGATGGCGAAGGGTTATAAAA 59.111 36.000 0.00 0.00 0.00 1.52
38 39 6.378564 TGAATGATGGCGAAGGGTTATAAAAA 59.621 34.615 0.00 0.00 0.00 1.94
39 40 5.828299 TGATGGCGAAGGGTTATAAAAAG 57.172 39.130 0.00 0.00 0.00 2.27
40 41 5.502079 TGATGGCGAAGGGTTATAAAAAGA 58.498 37.500 0.00 0.00 0.00 2.52
41 42 5.946972 TGATGGCGAAGGGTTATAAAAAGAA 59.053 36.000 0.00 0.00 0.00 2.52
42 43 5.632244 TGGCGAAGGGTTATAAAAAGAAC 57.368 39.130 0.00 0.00 0.00 3.01
43 44 4.154556 TGGCGAAGGGTTATAAAAAGAACG 59.845 41.667 0.00 0.00 0.00 3.95
44 45 4.154737 GGCGAAGGGTTATAAAAAGAACGT 59.845 41.667 0.00 0.00 0.00 3.99
45 46 5.319139 GCGAAGGGTTATAAAAAGAACGTC 58.681 41.667 0.00 0.00 0.00 4.34
46 47 5.106987 GCGAAGGGTTATAAAAAGAACGTCA 60.107 40.000 0.00 0.00 0.00 4.35
47 48 6.531439 CGAAGGGTTATAAAAAGAACGTCAG 58.469 40.000 0.00 0.00 0.00 3.51
48 49 6.401796 CGAAGGGTTATAAAAAGAACGTCAGG 60.402 42.308 0.00 0.00 0.00 3.86
49 50 5.250982 AGGGTTATAAAAAGAACGTCAGGG 58.749 41.667 0.00 0.00 0.00 4.45
50 51 4.142534 GGGTTATAAAAAGAACGTCAGGGC 60.143 45.833 0.00 0.00 0.00 5.19
51 52 4.456566 GGTTATAAAAAGAACGTCAGGGCA 59.543 41.667 0.00 0.00 0.00 5.36
52 53 5.048573 GGTTATAAAAAGAACGTCAGGGCAA 60.049 40.000 0.00 0.00 0.00 4.52
53 54 4.766404 ATAAAAAGAACGTCAGGGCAAG 57.234 40.909 0.00 0.00 0.00 4.01
54 55 2.341846 AAAAGAACGTCAGGGCAAGA 57.658 45.000 0.00 0.00 0.00 3.02
55 56 2.341846 AAAGAACGTCAGGGCAAGAA 57.658 45.000 0.00 0.00 0.00 2.52
56 57 2.568623 AAGAACGTCAGGGCAAGAAT 57.431 45.000 0.00 0.00 0.00 2.40
57 58 2.568623 AGAACGTCAGGGCAAGAATT 57.431 45.000 0.00 0.00 0.00 2.17
58 59 2.863809 AGAACGTCAGGGCAAGAATTT 58.136 42.857 0.00 0.00 0.00 1.82
59 60 4.015872 AGAACGTCAGGGCAAGAATTTA 57.984 40.909 0.00 0.00 0.00 1.40
60 61 4.589908 AGAACGTCAGGGCAAGAATTTAT 58.410 39.130 0.00 0.00 0.00 1.40
61 62 5.741011 AGAACGTCAGGGCAAGAATTTATA 58.259 37.500 0.00 0.00 0.00 0.98
62 63 6.177610 AGAACGTCAGGGCAAGAATTTATAA 58.822 36.000 0.00 0.00 0.00 0.98
63 64 6.828785 AGAACGTCAGGGCAAGAATTTATAAT 59.171 34.615 0.00 0.00 0.00 1.28
64 65 7.990886 AGAACGTCAGGGCAAGAATTTATAATA 59.009 33.333 0.00 0.00 0.00 0.98
65 66 7.730364 ACGTCAGGGCAAGAATTTATAATAG 57.270 36.000 0.00 0.00 0.00 1.73
66 67 7.506114 ACGTCAGGGCAAGAATTTATAATAGA 58.494 34.615 0.00 0.00 0.00 1.98
67 68 8.157476 ACGTCAGGGCAAGAATTTATAATAGAT 58.843 33.333 0.00 0.00 0.00 1.98
68 69 9.003658 CGTCAGGGCAAGAATTTATAATAGATT 57.996 33.333 0.00 0.00 0.00 2.40
86 87 8.480643 AATAGATTCACTTTTGTCTAAGTCCG 57.519 34.615 0.00 0.00 36.24 4.79
87 88 6.097915 AGATTCACTTTTGTCTAAGTCCGA 57.902 37.500 0.00 0.00 36.24 4.55
88 89 5.927115 AGATTCACTTTTGTCTAAGTCCGAC 59.073 40.000 0.00 0.00 36.24 4.79
89 90 3.635331 TCACTTTTGTCTAAGTCCGACG 58.365 45.455 0.00 0.00 36.24 5.12
90 91 3.316029 TCACTTTTGTCTAAGTCCGACGA 59.684 43.478 0.00 0.00 36.24 4.20
91 92 4.046462 CACTTTTGTCTAAGTCCGACGAA 58.954 43.478 0.00 0.00 36.24 3.85
92 93 4.148348 CACTTTTGTCTAAGTCCGACGAAG 59.852 45.833 0.00 0.00 36.24 3.79
93 94 4.202090 ACTTTTGTCTAAGTCCGACGAAGT 60.202 41.667 0.00 0.00 37.30 3.01
94 95 6.241648 ACTTTTGTCTAAGTCCGACGAAGTG 61.242 44.000 0.00 0.00 35.18 3.16
95 96 8.337104 ACTTTTGTCTAAGTCCGACGAAGTGA 62.337 42.308 0.00 0.00 35.18 3.41
96 97 9.702434 ACTTTTGTCTAAGTCCGACGAAGTGAA 62.702 40.741 0.00 0.00 35.18 3.18
104 105 4.331356 ACGAAGTGAACGTTCCGG 57.669 55.556 24.78 11.73 42.51 5.14
105 106 1.735360 ACGAAGTGAACGTTCCGGA 59.265 52.632 24.78 0.00 42.51 5.14
106 107 0.318445 ACGAAGTGAACGTTCCGGAG 60.318 55.000 24.78 14.41 42.51 4.63
107 108 0.318445 CGAAGTGAACGTTCCGGAGT 60.318 55.000 24.78 7.21 0.00 3.85
108 109 1.137513 GAAGTGAACGTTCCGGAGTG 58.862 55.000 24.78 3.52 0.00 3.51
109 110 0.878961 AAGTGAACGTTCCGGAGTGC 60.879 55.000 24.78 0.00 0.00 4.40
110 111 2.029964 TGAACGTTCCGGAGTGCC 59.970 61.111 24.78 0.00 0.00 5.01
111 112 2.342648 GAACGTTCCGGAGTGCCT 59.657 61.111 17.68 0.00 0.00 4.75
112 113 1.180456 TGAACGTTCCGGAGTGCCTA 61.180 55.000 24.78 0.00 0.00 3.93
113 114 0.037975 GAACGTTCCGGAGTGCCTAA 60.038 55.000 17.68 0.00 0.00 2.69
114 115 0.393820 AACGTTCCGGAGTGCCTAAA 59.606 50.000 3.34 0.00 0.00 1.85
115 116 0.393820 ACGTTCCGGAGTGCCTAAAA 59.606 50.000 3.34 0.00 0.00 1.52
116 117 1.002773 ACGTTCCGGAGTGCCTAAAAT 59.997 47.619 3.34 0.00 0.00 1.82
117 118 1.664151 CGTTCCGGAGTGCCTAAAATC 59.336 52.381 3.34 0.00 0.00 2.17
118 119 2.677037 CGTTCCGGAGTGCCTAAAATCT 60.677 50.000 3.34 0.00 0.00 2.40
119 120 3.344515 GTTCCGGAGTGCCTAAAATCTT 58.655 45.455 3.34 0.00 0.00 2.40
120 121 3.261981 TCCGGAGTGCCTAAAATCTTC 57.738 47.619 0.00 0.00 0.00 2.87
121 122 2.838202 TCCGGAGTGCCTAAAATCTTCT 59.162 45.455 0.00 0.00 0.00 2.85
122 123 3.263425 TCCGGAGTGCCTAAAATCTTCTT 59.737 43.478 0.00 0.00 0.00 2.52
123 124 4.010349 CCGGAGTGCCTAAAATCTTCTTT 58.990 43.478 0.00 0.00 0.00 2.52
124 125 5.046159 TCCGGAGTGCCTAAAATCTTCTTTA 60.046 40.000 0.00 0.00 0.00 1.85
125 126 5.294552 CCGGAGTGCCTAAAATCTTCTTTAG 59.705 44.000 0.00 0.00 38.22 1.85
126 127 5.875359 CGGAGTGCCTAAAATCTTCTTTAGT 59.125 40.000 3.23 0.00 37.23 2.24
127 128 6.371825 CGGAGTGCCTAAAATCTTCTTTAGTT 59.628 38.462 3.23 0.00 37.23 2.24
128 129 7.094762 CGGAGTGCCTAAAATCTTCTTTAGTTT 60.095 37.037 3.23 0.00 37.23 2.66
129 130 8.023706 GGAGTGCCTAAAATCTTCTTTAGTTTG 58.976 37.037 3.23 0.00 37.23 2.93
130 131 7.886338 AGTGCCTAAAATCTTCTTTAGTTTGG 58.114 34.615 3.23 0.00 37.23 3.28
131 132 7.505923 AGTGCCTAAAATCTTCTTTAGTTTGGT 59.494 33.333 3.23 0.00 37.23 3.67
132 133 8.789762 GTGCCTAAAATCTTCTTTAGTTTGGTA 58.210 33.333 3.23 0.00 37.23 3.25
133 134 8.789762 TGCCTAAAATCTTCTTTAGTTTGGTAC 58.210 33.333 3.23 0.00 37.23 3.34
134 135 8.242053 GCCTAAAATCTTCTTTAGTTTGGTACC 58.758 37.037 4.43 4.43 37.23 3.34
135 136 9.292195 CCTAAAATCTTCTTTAGTTTGGTACCA 57.708 33.333 11.60 11.60 37.23 3.25
137 138 8.762481 AAAATCTTCTTTAGTTTGGTACCAGT 57.238 30.769 15.65 6.71 0.00 4.00
138 139 8.762481 AAATCTTCTTTAGTTTGGTACCAGTT 57.238 30.769 15.65 7.36 0.00 3.16
139 140 8.762481 AATCTTCTTTAGTTTGGTACCAGTTT 57.238 30.769 15.65 7.00 0.00 2.66
140 141 9.856162 AATCTTCTTTAGTTTGGTACCAGTTTA 57.144 29.630 15.65 6.00 0.00 2.01
142 143 9.280174 TCTTCTTTAGTTTGGTACCAGTTTATG 57.720 33.333 15.65 4.75 0.00 1.90
160 161 1.216064 TGGGATTCCAGATGTCCAGG 58.784 55.000 4.80 0.00 38.32 4.45
161 162 0.179006 GGGATTCCAGATGTCCAGGC 60.179 60.000 4.80 0.00 33.62 4.85
162 163 0.179006 GGATTCCAGATGTCCAGGCC 60.179 60.000 0.00 0.00 32.23 5.19
163 164 0.842635 GATTCCAGATGTCCAGGCCT 59.157 55.000 0.00 0.00 0.00 5.19
164 165 0.549950 ATTCCAGATGTCCAGGCCTG 59.450 55.000 26.87 26.87 0.00 4.85
165 166 0.842030 TTCCAGATGTCCAGGCCTGT 60.842 55.000 30.63 13.02 0.00 4.00
166 167 1.222936 CCAGATGTCCAGGCCTGTC 59.777 63.158 30.63 20.99 0.00 3.51
167 168 1.222936 CAGATGTCCAGGCCTGTCC 59.777 63.158 30.63 20.27 0.00 4.02
168 169 2.187946 GATGTCCAGGCCTGTCCG 59.812 66.667 30.63 16.20 40.77 4.79
169 170 3.391665 GATGTCCAGGCCTGTCCGG 62.392 68.421 30.63 16.26 40.77 5.14
170 171 3.924013 ATGTCCAGGCCTGTCCGGA 62.924 63.158 30.63 18.47 40.77 5.14
171 172 4.083862 GTCCAGGCCTGTCCGGAC 62.084 72.222 30.63 28.17 44.78 4.79
172 173 4.631740 TCCAGGCCTGTCCGGACA 62.632 66.667 34.13 34.13 46.64 4.02
173 174 3.402681 CCAGGCCTGTCCGGACAT 61.403 66.667 36.21 20.00 46.64 3.06
174 175 2.671070 CAGGCCTGTCCGGACATT 59.329 61.111 36.21 19.45 46.64 2.71
175 176 1.002134 CAGGCCTGTCCGGACATTT 60.002 57.895 36.21 19.11 46.64 2.32
176 177 0.609131 CAGGCCTGTCCGGACATTTT 60.609 55.000 36.21 19.44 46.64 1.82
177 178 0.112412 AGGCCTGTCCGGACATTTTT 59.888 50.000 36.21 19.80 46.64 1.94
178 179 0.526211 GGCCTGTCCGGACATTTTTC 59.474 55.000 36.21 21.53 42.15 2.29
179 180 1.534729 GCCTGTCCGGACATTTTTCT 58.465 50.000 36.21 0.00 41.01 2.52
180 181 1.886542 GCCTGTCCGGACATTTTTCTT 59.113 47.619 36.21 0.00 41.01 2.52
181 182 3.078837 GCCTGTCCGGACATTTTTCTTA 58.921 45.455 36.21 11.47 41.01 2.10
182 183 3.504520 GCCTGTCCGGACATTTTTCTTAA 59.495 43.478 36.21 10.70 41.01 1.85
183 184 4.157840 GCCTGTCCGGACATTTTTCTTAAT 59.842 41.667 36.21 0.00 41.01 1.40
184 185 5.676331 GCCTGTCCGGACATTTTTCTTAATC 60.676 44.000 36.21 11.09 41.01 1.75
185 186 5.414454 CCTGTCCGGACATTTTTCTTAATCA 59.586 40.000 36.21 9.54 41.01 2.57
186 187 6.095440 CCTGTCCGGACATTTTTCTTAATCAT 59.905 38.462 36.21 0.00 41.01 2.45
187 188 7.083875 TGTCCGGACATTTTTCTTAATCATC 57.916 36.000 33.23 0.73 36.21 2.92
188 189 6.657117 TGTCCGGACATTTTTCTTAATCATCA 59.343 34.615 33.23 3.74 36.21 3.07
189 190 7.339212 TGTCCGGACATTTTTCTTAATCATCAT 59.661 33.333 33.23 0.00 36.21 2.45
190 191 8.190784 GTCCGGACATTTTTCTTAATCATCATT 58.809 33.333 29.75 0.00 0.00 2.57
191 192 8.190122 TCCGGACATTTTTCTTAATCATCATTG 58.810 33.333 0.00 0.00 0.00 2.82
192 193 7.975616 CCGGACATTTTTCTTAATCATCATTGT 59.024 33.333 0.00 0.00 0.00 2.71
193 194 9.357652 CGGACATTTTTCTTAATCATCATTGTT 57.642 29.630 0.00 0.00 0.00 2.83
199 200 9.571810 TTTTTCTTAATCATCATTGTTCGATGG 57.428 29.630 0.00 0.00 40.58 3.51
200 201 6.304356 TCTTAATCATCATTGTTCGATGGC 57.696 37.500 0.00 0.00 40.58 4.40
201 202 5.821995 TCTTAATCATCATTGTTCGATGGCA 59.178 36.000 0.00 0.00 40.58 4.92
202 203 4.987408 AATCATCATTGTTCGATGGCAA 57.013 36.364 0.00 0.00 40.58 4.52
203 204 4.987408 ATCATCATTGTTCGATGGCAAA 57.013 36.364 0.00 0.00 40.58 3.68
204 205 4.780275 TCATCATTGTTCGATGGCAAAA 57.220 36.364 0.00 0.00 40.58 2.44
205 206 5.131594 TCATCATTGTTCGATGGCAAAAA 57.868 34.783 0.00 0.00 40.58 1.94
206 207 5.162794 TCATCATTGTTCGATGGCAAAAAG 58.837 37.500 0.00 0.00 40.58 2.27
207 208 4.582701 TCATTGTTCGATGGCAAAAAGT 57.417 36.364 0.00 0.00 0.00 2.66
208 209 5.697473 TCATTGTTCGATGGCAAAAAGTA 57.303 34.783 0.00 0.00 0.00 2.24
209 210 6.266168 TCATTGTTCGATGGCAAAAAGTAT 57.734 33.333 0.00 0.00 0.00 2.12
210 211 6.686630 TCATTGTTCGATGGCAAAAAGTATT 58.313 32.000 0.00 0.00 0.00 1.89
211 212 7.151308 TCATTGTTCGATGGCAAAAAGTATTT 58.849 30.769 0.00 0.00 42.41 1.40
225 226 5.596268 AAAGTATTTTGTACCGTTCGGTC 57.404 39.130 20.17 12.29 31.62 4.79
226 227 3.244976 AGTATTTTGTACCGTTCGGTCG 58.755 45.455 20.17 0.00 39.52 4.79
227 228 6.806684 AAAGTATTTTGTACCGTTCGGTCGG 61.807 44.000 20.17 15.31 46.26 4.79
228 229 8.885765 AAAGTATTTTGTACCGTTCGGTCGGA 62.886 42.308 20.17 0.48 44.62 4.55
238 239 4.178156 CGTTCGGTCGGAATATTTGAAG 57.822 45.455 0.00 0.00 36.92 3.02
239 240 3.000925 CGTTCGGTCGGAATATTTGAAGG 59.999 47.826 0.00 0.00 36.92 3.46
240 241 3.188159 TCGGTCGGAATATTTGAAGGG 57.812 47.619 0.00 0.00 0.00 3.95
241 242 2.158871 TCGGTCGGAATATTTGAAGGGG 60.159 50.000 0.00 0.00 0.00 4.79
242 243 2.583143 GGTCGGAATATTTGAAGGGGG 58.417 52.381 0.00 0.00 0.00 5.40
243 244 2.092049 GGTCGGAATATTTGAAGGGGGT 60.092 50.000 0.00 0.00 0.00 4.95
244 245 3.136992 GGTCGGAATATTTGAAGGGGGTA 59.863 47.826 0.00 0.00 0.00 3.69
245 246 4.202535 GGTCGGAATATTTGAAGGGGGTAT 60.203 45.833 0.00 0.00 0.00 2.73
246 247 5.382616 GTCGGAATATTTGAAGGGGGTATT 58.617 41.667 0.00 0.00 0.00 1.89
247 248 5.831525 GTCGGAATATTTGAAGGGGGTATTT 59.168 40.000 0.00 0.00 0.00 1.40
248 249 6.322969 GTCGGAATATTTGAAGGGGGTATTTT 59.677 38.462 0.00 0.00 0.00 1.82
249 250 6.898521 TCGGAATATTTGAAGGGGGTATTTTT 59.101 34.615 0.00 0.00 0.00 1.94
268 269 3.534357 TTTTTGAGGCATTGTAGGGGA 57.466 42.857 0.00 0.00 0.00 4.81
269 270 3.756082 TTTTGAGGCATTGTAGGGGAT 57.244 42.857 0.00 0.00 0.00 3.85
270 271 4.871871 TTTTGAGGCATTGTAGGGGATA 57.128 40.909 0.00 0.00 0.00 2.59
271 272 5.402054 TTTTGAGGCATTGTAGGGGATAT 57.598 39.130 0.00 0.00 0.00 1.63
272 273 5.402054 TTTGAGGCATTGTAGGGGATATT 57.598 39.130 0.00 0.00 0.00 1.28
273 274 5.402054 TTGAGGCATTGTAGGGGATATTT 57.598 39.130 0.00 0.00 0.00 1.40
274 275 5.402054 TGAGGCATTGTAGGGGATATTTT 57.598 39.130 0.00 0.00 0.00 1.82
275 276 5.776358 TGAGGCATTGTAGGGGATATTTTT 58.224 37.500 0.00 0.00 0.00 1.94
307 308 3.533146 TGTAGGGGGATTTGGTGACTTA 58.467 45.455 0.00 0.00 0.00 2.24
323 324 3.195661 GACTTACATTAGAGTTGCCCCG 58.804 50.000 0.00 0.00 0.00 5.73
330 331 0.396695 TAGAGTTGCCCCGAGGGTAG 60.397 60.000 7.48 0.00 46.51 3.18
331 332 1.988406 GAGTTGCCCCGAGGGTAGT 60.988 63.158 7.48 2.99 46.51 2.73
341 342 1.897802 CCGAGGGTAGTGTAGTTTGGT 59.102 52.381 0.00 0.00 0.00 3.67
377 383 0.179094 TTCAATACTAGGTGCGCCCG 60.179 55.000 14.07 7.21 38.74 6.13
437 447 3.112709 GTCTCGCACGTTCCTGCC 61.113 66.667 0.00 0.00 33.18 4.85
452 462 3.873910 TCCTGCCCTCTTTTAGAATTCG 58.126 45.455 0.00 0.00 0.00 3.34
511 525 2.158711 GGATGATGATGCCTTGTCAGGA 60.159 50.000 0.00 0.00 44.19 3.86
518 532 1.300963 GCCTTGTCAGGATCAGCCA 59.699 57.895 0.00 0.00 44.19 4.75
519 533 1.028868 GCCTTGTCAGGATCAGCCAC 61.029 60.000 0.00 0.00 44.19 5.01
520 534 0.325933 CCTTGTCAGGATCAGCCACA 59.674 55.000 0.00 0.00 44.19 4.17
521 535 1.678123 CCTTGTCAGGATCAGCCACAG 60.678 57.143 0.00 0.00 44.19 3.66
522 536 0.325933 TTGTCAGGATCAGCCACAGG 59.674 55.000 0.00 0.00 40.02 4.00
693 707 0.470833 ATATCCGCACCTGCCTCTCT 60.471 55.000 0.00 0.00 37.91 3.10
698 712 1.610624 CCGCACCTGCCTCTCTTAAAA 60.611 52.381 0.00 0.00 37.91 1.52
711 725 8.787852 TGCCTCTCTTAAAAGAAAATTCTTCTC 58.212 33.333 8.74 0.00 46.22 2.87
712 726 8.240682 GCCTCTCTTAAAAGAAAATTCTTCTCC 58.759 37.037 8.74 0.00 46.22 3.71
713 727 8.447053 CCTCTCTTAAAAGAAAATTCTTCTCCG 58.553 37.037 8.74 0.42 46.22 4.63
714 728 8.324163 TCTCTTAAAAGAAAATTCTTCTCCGG 57.676 34.615 8.74 0.00 46.22 5.14
724 738 0.984230 TCTTCTCCGGCCAGAATGTT 59.016 50.000 2.24 0.00 31.84 2.71
861 875 2.548067 GGACGGCTCATATTACCACCAG 60.548 54.545 0.00 0.00 0.00 4.00
908 922 4.368808 CGTCCACAACTTGGCGCG 62.369 66.667 0.00 0.00 46.47 6.86
979 1003 2.669569 GCAACCAGCCGCTCTCAA 60.670 61.111 0.00 0.00 37.23 3.02
987 1011 3.787001 CCGCTCTCAACCTCCCCC 61.787 72.222 0.00 0.00 0.00 5.40
1069 1093 2.035155 TTCTCCTCTCGCCGTCCA 59.965 61.111 0.00 0.00 0.00 4.02
1220 1295 6.467723 TCTCTTTTGACGAATGAACTAAGC 57.532 37.500 0.00 0.00 0.00 3.09
1221 1296 6.223852 TCTCTTTTGACGAATGAACTAAGCT 58.776 36.000 0.00 0.00 0.00 3.74
1222 1297 7.375834 TCTCTTTTGACGAATGAACTAAGCTA 58.624 34.615 0.00 0.00 0.00 3.32
1291 1373 6.204359 CAATTTCTTGTTCCGATGATGGATC 58.796 40.000 0.00 0.00 38.00 3.36
1347 1444 2.815211 TGCTGCGCAGATCCGAAC 60.815 61.111 40.21 20.70 33.32 3.95
1445 1647 5.278022 GCTTGCTTACTTGTTTGCTAGAGTT 60.278 40.000 0.00 0.00 31.85 3.01
1613 1830 6.587273 GGAAGACATCCTAAATCAACTAGCT 58.413 40.000 0.00 0.00 45.56 3.32
1671 1915 4.214971 TCTTGTCCTTCTACTGTACGTGTC 59.785 45.833 0.00 0.00 0.00 3.67
1711 1959 2.887568 GATGCCACGTGAGAGCGG 60.888 66.667 19.30 0.00 36.86 5.52
1744 2029 6.317391 GGAAGATACCAAATTTGACTCTCCAG 59.683 42.308 19.86 2.70 0.00 3.86
1811 2098 2.806434 TGATCATTTCAACCACCCCAG 58.194 47.619 0.00 0.00 0.00 4.45
2229 3462 6.723977 ACTACATTTGGCCAGGATAAGAAAAA 59.276 34.615 5.11 0.00 0.00 1.94
2432 5134 7.112528 TCGATAACTAACAAACATGTGACAC 57.887 36.000 0.00 0.00 0.00 3.67
2768 5531 0.250295 GGCAGCACTGGACAACACTA 60.250 55.000 0.00 0.00 0.00 2.74
2841 5617 5.183713 CACCTAGTGCTTCATTTTGATTGGA 59.816 40.000 0.00 0.00 0.00 3.53
2922 5754 0.872881 ACGTACGTATTCATGCGGCC 60.873 55.000 21.41 0.00 40.26 6.13
2923 5755 0.872451 CGTACGTATTCATGCGGCCA 60.872 55.000 7.22 0.00 40.26 5.36
3077 5990 4.122776 CTGCAAATCGCTCTACCTTGTAT 58.877 43.478 0.00 0.00 43.06 2.29
3127 6042 0.749649 GATCTCGTGGGATCAGCAGT 59.250 55.000 4.85 0.00 41.07 4.40
3128 6043 0.749649 ATCTCGTGGGATCAGCAGTC 59.250 55.000 0.00 0.00 0.00 3.51
3130 6045 0.247460 CTCGTGGGATCAGCAGTCAA 59.753 55.000 0.00 0.00 0.00 3.18
3131 6046 0.247460 TCGTGGGATCAGCAGTCAAG 59.753 55.000 0.00 0.00 0.00 3.02
3132 6047 1.364626 CGTGGGATCAGCAGTCAAGC 61.365 60.000 0.00 0.00 0.00 4.01
3133 6048 1.078918 TGGGATCAGCAGTCAAGCG 60.079 57.895 0.00 0.00 40.15 4.68
3135 6050 0.391661 GGGATCAGCAGTCAAGCGAA 60.392 55.000 0.00 0.00 40.15 4.70
3136 6051 1.005340 GGATCAGCAGTCAAGCGAAG 58.995 55.000 0.00 0.00 40.15 3.79
3138 6053 2.072298 GATCAGCAGTCAAGCGAAGTT 58.928 47.619 0.00 0.00 40.15 2.66
3193 7201 2.757894 TGTTTAGGAGGTTGGGCAAA 57.242 45.000 0.00 0.00 0.00 3.68
3197 7205 0.254747 TAGGAGGTTGGGCAAATCGG 59.745 55.000 0.00 0.00 0.00 4.18
3200 7208 1.474330 GAGGTTGGGCAAATCGGAAT 58.526 50.000 0.00 0.00 0.00 3.01
3210 7218 8.573035 GTTGGGCAAATCGGAATTATATTCTTA 58.427 33.333 0.00 0.00 0.00 2.10
3265 7284 6.530567 CATGTGTCTTAATGCAAAAATGCTG 58.469 36.000 0.00 0.00 35.49 4.41
3267 7286 3.995705 TGTCTTAATGCAAAAATGCTGCC 59.004 39.130 0.00 0.00 39.13 4.85
3293 7312 3.821841 CGTTAACCTTACGTTACGGACT 58.178 45.455 10.20 0.00 36.65 3.85
3294 7313 4.965062 CGTTAACCTTACGTTACGGACTA 58.035 43.478 10.20 0.00 36.65 2.59
3295 7314 4.786575 CGTTAACCTTACGTTACGGACTAC 59.213 45.833 10.20 0.00 36.65 2.73
3296 7315 3.850122 AACCTTACGTTACGGACTACC 57.150 47.619 10.20 0.00 30.96 3.18
3297 7316 2.092323 ACCTTACGTTACGGACTACCC 58.908 52.381 10.20 0.00 0.00 3.69
3298 7317 1.405463 CCTTACGTTACGGACTACCCC 59.595 57.143 10.20 0.00 0.00 4.95
3305 7324 4.382788 CGGACTACCCCGCAAAAA 57.617 55.556 0.00 0.00 43.25 1.94
3352 7447 1.665735 CGGTTTCATGCGGTTGGAAAG 60.666 52.381 0.00 0.00 31.75 2.62
3378 7476 0.871722 CACGGTGCTCGGAAATTTCA 59.128 50.000 19.49 0.00 44.45 2.69
3436 7574 6.596497 GGAGTGAATTAACTAACGGATTTCCA 59.404 38.462 0.00 0.00 35.14 3.53
3443 7581 5.659440 AACTAACGGATTTCCATTGCATT 57.341 34.783 0.00 0.00 35.14 3.56
3475 7613 1.132262 CCAATGTACCACAATGGCGTC 59.868 52.381 0.66 0.00 41.70 5.19
3544 7682 0.257039 GCAACCTCTCATGGGGTCAT 59.743 55.000 0.00 0.00 34.35 3.06
3577 7715 2.651361 CTCGTGAACTGGGACGCT 59.349 61.111 0.00 0.00 35.53 5.07
3652 7790 2.609299 TCCGCCACAATCCTCCCA 60.609 61.111 0.00 0.00 0.00 4.37
4100 8238 1.595382 GTGAGGCACGTGCTGAAGT 60.595 57.895 36.84 18.23 41.70 3.01
4388 8552 4.155826 CGGTCAATTTCCAATCAACTAGCA 59.844 41.667 0.00 0.00 0.00 3.49
4523 8712 2.808543 GACATTGAGGAGCAAACGAGTT 59.191 45.455 0.00 0.00 40.48 3.01
4573 8762 0.517316 GGTGGCGTGAACAAGATCAC 59.483 55.000 0.00 0.87 44.96 3.06
4898 9090 5.164061 CGCTATTGCAAACTCATGTTTTTCC 60.164 40.000 1.71 0.00 43.13 3.13
4920 9115 4.319261 CCTGTTTTAACTTGTGTACCTCGC 60.319 45.833 0.00 0.00 0.00 5.03
4925 9120 0.103572 ACTTGTGTACCTCGCGTTGT 59.896 50.000 5.77 7.29 0.00 3.32
5294 9530 3.397613 GAGGCTGGCGATGGCTTCT 62.398 63.158 0.00 0.00 40.49 2.85
5329 9565 0.253327 GGCAGGTGACTCCCTTAAGG 59.747 60.000 15.14 15.14 40.21 2.69
5330 9566 0.984995 GCAGGTGACTCCCTTAAGGT 59.015 55.000 20.22 1.40 40.21 3.50
5387 9623 7.201145 ACCACGCACTAGTTTAATATGTAGAG 58.799 38.462 0.00 0.00 0.00 2.43
5437 9673 4.457496 ACCTCATGGTGCGAGCCG 62.457 66.667 0.00 0.00 46.51 5.52
5535 9771 2.225343 ACAATTGGGGAGCTTCCATTCA 60.225 45.455 14.70 0.00 38.64 2.57
5546 9783 4.548991 GCTTCCATTCACTCAAGCTATG 57.451 45.455 0.00 0.00 38.58 2.23
5640 10079 9.940166 CTTTACTAGGACAAAAATAACAACGTT 57.060 29.630 0.00 0.00 0.00 3.99
5644 10083 9.887406 ACTAGGACAAAAATAACAACGTTTATG 57.113 29.630 0.00 0.00 0.00 1.90
5786 10234 4.936891 AGTTTTTGCAGTTGGCTTCTAAG 58.063 39.130 0.00 0.00 45.15 2.18
5816 10264 5.594725 GGGATTCTCTTTTCCCTTATCCAAC 59.405 44.000 0.00 0.00 46.91 3.77
5837 10285 7.504238 TCCAACTGGAGTAAATGTTTTGTACAT 59.496 33.333 0.00 0.00 43.61 2.29
5884 10333 6.037726 TGTCTTTTCCCTTTTTCTTTTACGC 58.962 36.000 0.00 0.00 0.00 4.42
5889 10338 5.747951 TCCCTTTTTCTTTTACGCGTAAA 57.252 34.783 34.03 34.03 33.63 2.01
6023 10472 7.259882 TGTTTCTATATGATTGCTTTGCTTGG 58.740 34.615 0.00 0.00 0.00 3.61
6024 10473 7.122501 TGTTTCTATATGATTGCTTTGCTTGGA 59.877 33.333 0.00 0.00 0.00 3.53
6025 10474 6.872628 TCTATATGATTGCTTTGCTTGGAG 57.127 37.500 0.00 0.00 0.00 3.86
6028 10477 2.165167 TGATTGCTTTGCTTGGAGGAG 58.835 47.619 0.00 0.00 0.00 3.69
6030 10479 0.178981 TTGCTTTGCTTGGAGGAGCT 60.179 50.000 0.00 0.00 43.11 4.09
6033 10482 2.016096 GCTTTGCTTGGAGGAGCTAGG 61.016 57.143 0.00 0.00 43.11 3.02
6034 10483 0.620556 TTTGCTTGGAGGAGCTAGGG 59.379 55.000 0.00 0.00 43.11 3.53
6036 10485 2.447714 GCTTGGAGGAGCTAGGGGG 61.448 68.421 0.00 0.00 39.57 5.40
6037 10486 1.314867 CTTGGAGGAGCTAGGGGGA 59.685 63.158 0.00 0.00 0.00 4.81
6038 10487 1.003051 TTGGAGGAGCTAGGGGGAC 59.997 63.158 0.00 0.00 0.00 4.46
6039 10488 1.528341 TTGGAGGAGCTAGGGGGACT 61.528 60.000 0.00 0.00 0.00 3.85
6040 10489 1.458588 GGAGGAGCTAGGGGGACTG 60.459 68.421 0.00 0.00 0.00 3.51
6041 10490 1.458588 GAGGAGCTAGGGGGACTGG 60.459 68.421 0.00 0.00 0.00 4.00
6046 10495 2.368594 CTAGGGGGACTGGCAGGA 59.631 66.667 20.34 0.00 0.00 3.86
6081 11295 2.221055 CCGATTGTCTTATAGCAACCGC 59.779 50.000 0.00 0.00 30.82 5.68
6084 11298 4.684242 CGATTGTCTTATAGCAACCGCATA 59.316 41.667 0.00 0.00 42.27 3.14
6107 11321 2.746375 GGGGTCCTCCATCGCACAT 61.746 63.158 0.00 0.00 37.22 3.21
6113 11327 2.032550 GTCCTCCATCGCACATGATTTG 59.967 50.000 0.00 0.00 0.00 2.32
6126 11340 5.565242 GCACATGATTTGATGAGTGGAAACA 60.565 40.000 0.00 0.00 38.70 2.83
6131 11345 7.053316 TGATTTGATGAGTGGAAACATTTGT 57.947 32.000 0.00 0.00 46.14 2.83
6135 11349 2.382882 TGAGTGGAAACATTTGTGGCA 58.617 42.857 0.00 0.00 46.14 4.92
6183 11397 2.717390 CACAATCGTTTGGGATGGGTA 58.283 47.619 10.77 0.00 38.63 3.69
6242 11456 0.599060 TACTTCGTCCATCGCACACA 59.401 50.000 0.00 0.00 39.67 3.72
6261 11475 0.602638 ATTGCCAAGACGAACTCGCA 60.603 50.000 0.00 0.00 44.43 5.10
6312 11526 6.029607 CAGTTTATAGCAATCGCATGTGTTT 58.970 36.000 6.09 1.05 42.27 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.126514 GCCATCATTCATGCCGATTAGAG 59.873 47.826 0.00 0.00 0.00 2.43
3 4 2.159612 CGCCATCATTCATGCCGATTAG 60.160 50.000 0.00 0.00 0.00 1.73
5 6 0.594602 CGCCATCATTCATGCCGATT 59.405 50.000 0.00 0.00 0.00 3.34
6 7 0.250424 TCGCCATCATTCATGCCGAT 60.250 50.000 0.00 0.00 0.00 4.18
8 9 0.040692 CTTCGCCATCATTCATGCCG 60.041 55.000 0.00 0.00 0.00 5.69
10 11 0.313043 CCCTTCGCCATCATTCATGC 59.687 55.000 0.00 0.00 0.00 4.06
11 12 1.683943 ACCCTTCGCCATCATTCATG 58.316 50.000 0.00 0.00 0.00 3.07
14 15 6.385649 TTTTATAACCCTTCGCCATCATTC 57.614 37.500 0.00 0.00 0.00 2.67
15 16 6.605594 TCTTTTTATAACCCTTCGCCATCATT 59.394 34.615 0.00 0.00 0.00 2.57
16 17 6.126409 TCTTTTTATAACCCTTCGCCATCAT 58.874 36.000 0.00 0.00 0.00 2.45
17 18 5.502079 TCTTTTTATAACCCTTCGCCATCA 58.498 37.500 0.00 0.00 0.00 3.07
18 19 6.263344 GTTCTTTTTATAACCCTTCGCCATC 58.737 40.000 0.00 0.00 0.00 3.51
20 21 4.154556 CGTTCTTTTTATAACCCTTCGCCA 59.845 41.667 0.00 0.00 0.00 5.69
21 22 4.154737 ACGTTCTTTTTATAACCCTTCGCC 59.845 41.667 0.00 0.00 0.00 5.54
22 23 5.106987 TGACGTTCTTTTTATAACCCTTCGC 60.107 40.000 0.00 0.00 0.00 4.70
23 24 6.401796 CCTGACGTTCTTTTTATAACCCTTCG 60.402 42.308 0.00 0.00 0.00 3.79
24 25 6.128090 CCCTGACGTTCTTTTTATAACCCTTC 60.128 42.308 0.00 0.00 0.00 3.46
25 26 5.708697 CCCTGACGTTCTTTTTATAACCCTT 59.291 40.000 0.00 0.00 0.00 3.95
26 27 5.250982 CCCTGACGTTCTTTTTATAACCCT 58.749 41.667 0.00 0.00 0.00 4.34
27 28 4.142534 GCCCTGACGTTCTTTTTATAACCC 60.143 45.833 0.00 0.00 0.00 4.11
28 29 4.456566 TGCCCTGACGTTCTTTTTATAACC 59.543 41.667 0.00 0.00 0.00 2.85
29 30 5.616488 TGCCCTGACGTTCTTTTTATAAC 57.384 39.130 0.00 0.00 0.00 1.89
30 31 5.998981 TCTTGCCCTGACGTTCTTTTTATAA 59.001 36.000 0.00 0.00 0.00 0.98
31 32 5.553123 TCTTGCCCTGACGTTCTTTTTATA 58.447 37.500 0.00 0.00 0.00 0.98
32 33 4.394729 TCTTGCCCTGACGTTCTTTTTAT 58.605 39.130 0.00 0.00 0.00 1.40
33 34 3.811083 TCTTGCCCTGACGTTCTTTTTA 58.189 40.909 0.00 0.00 0.00 1.52
34 35 2.650322 TCTTGCCCTGACGTTCTTTTT 58.350 42.857 0.00 0.00 0.00 1.94
35 36 2.341846 TCTTGCCCTGACGTTCTTTT 57.658 45.000 0.00 0.00 0.00 2.27
36 37 2.341846 TTCTTGCCCTGACGTTCTTT 57.658 45.000 0.00 0.00 0.00 2.52
37 38 2.568623 ATTCTTGCCCTGACGTTCTT 57.431 45.000 0.00 0.00 0.00 2.52
38 39 2.568623 AATTCTTGCCCTGACGTTCT 57.431 45.000 0.00 0.00 0.00 3.01
39 40 4.965119 ATAAATTCTTGCCCTGACGTTC 57.035 40.909 0.00 0.00 0.00 3.95
40 41 7.990886 TCTATTATAAATTCTTGCCCTGACGTT 59.009 33.333 0.00 0.00 0.00 3.99
41 42 7.506114 TCTATTATAAATTCTTGCCCTGACGT 58.494 34.615 0.00 0.00 0.00 4.34
42 43 7.962964 TCTATTATAAATTCTTGCCCTGACG 57.037 36.000 0.00 0.00 0.00 4.35
60 61 9.582431 CGGACTTAGACAAAAGTGAATCTATTA 57.418 33.333 0.00 0.00 39.78 0.98
61 62 8.311836 TCGGACTTAGACAAAAGTGAATCTATT 58.688 33.333 0.00 0.00 39.78 1.73
62 63 7.760340 GTCGGACTTAGACAAAAGTGAATCTAT 59.240 37.037 0.00 0.00 39.78 1.98
63 64 7.088905 GTCGGACTTAGACAAAAGTGAATCTA 58.911 38.462 0.00 0.00 39.78 1.98
64 65 5.927115 GTCGGACTTAGACAAAAGTGAATCT 59.073 40.000 0.00 0.00 39.78 2.40
65 66 5.164080 CGTCGGACTTAGACAAAAGTGAATC 60.164 44.000 6.57 0.00 39.78 2.52
66 67 4.684703 CGTCGGACTTAGACAAAAGTGAAT 59.315 41.667 6.57 0.00 39.78 2.57
67 68 4.046462 CGTCGGACTTAGACAAAAGTGAA 58.954 43.478 6.57 0.00 39.78 3.18
68 69 3.316029 TCGTCGGACTTAGACAAAAGTGA 59.684 43.478 6.57 0.00 39.78 3.41
69 70 3.635331 TCGTCGGACTTAGACAAAAGTG 58.365 45.455 6.57 0.00 39.78 3.16
70 71 3.996150 TCGTCGGACTTAGACAAAAGT 57.004 42.857 6.57 0.00 42.36 2.66
71 72 4.148348 CACTTCGTCGGACTTAGACAAAAG 59.852 45.833 6.57 6.82 38.46 2.27
72 73 4.046462 CACTTCGTCGGACTTAGACAAAA 58.954 43.478 6.57 0.00 38.46 2.44
73 74 3.316029 TCACTTCGTCGGACTTAGACAAA 59.684 43.478 6.57 0.00 38.46 2.83
74 75 2.880268 TCACTTCGTCGGACTTAGACAA 59.120 45.455 6.57 0.00 38.46 3.18
75 76 2.497138 TCACTTCGTCGGACTTAGACA 58.503 47.619 6.57 0.00 38.46 3.41
76 77 3.232771 GTTCACTTCGTCGGACTTAGAC 58.767 50.000 6.57 0.00 35.41 2.59
77 78 2.096069 CGTTCACTTCGTCGGACTTAGA 60.096 50.000 6.57 0.00 0.00 2.10
78 79 2.240040 CGTTCACTTCGTCGGACTTAG 58.760 52.381 6.57 5.79 0.00 2.18
79 80 1.603802 ACGTTCACTTCGTCGGACTTA 59.396 47.619 6.57 0.00 36.85 2.24
80 81 0.383231 ACGTTCACTTCGTCGGACTT 59.617 50.000 6.57 0.00 36.85 3.01
81 82 0.383231 AACGTTCACTTCGTCGGACT 59.617 50.000 6.57 0.00 40.69 3.85
82 83 0.774685 GAACGTTCACTTCGTCGGAC 59.225 55.000 23.12 0.00 40.69 4.79
83 84 0.318107 GGAACGTTCACTTCGTCGGA 60.318 55.000 28.24 0.00 40.69 4.55
84 85 2.139210 GGAACGTTCACTTCGTCGG 58.861 57.895 28.24 0.00 40.69 4.79
98 99 2.987232 AGATTTTAGGCACTCCGGAAC 58.013 47.619 5.23 0.00 41.75 3.62
99 100 3.263425 AGAAGATTTTAGGCACTCCGGAA 59.737 43.478 5.23 0.00 41.75 4.30
100 101 2.838202 AGAAGATTTTAGGCACTCCGGA 59.162 45.455 2.93 2.93 41.75 5.14
101 102 3.268023 AGAAGATTTTAGGCACTCCGG 57.732 47.619 0.00 0.00 41.75 5.14
102 103 5.875359 ACTAAAGAAGATTTTAGGCACTCCG 59.125 40.000 9.53 0.00 42.33 4.63
103 104 7.689446 AACTAAAGAAGATTTTAGGCACTCC 57.311 36.000 9.53 0.00 42.33 3.85
104 105 8.023706 CCAAACTAAAGAAGATTTTAGGCACTC 58.976 37.037 9.53 0.00 42.33 3.51
105 106 7.505923 ACCAAACTAAAGAAGATTTTAGGCACT 59.494 33.333 9.53 0.00 42.33 4.40
106 107 7.658261 ACCAAACTAAAGAAGATTTTAGGCAC 58.342 34.615 9.53 0.00 42.33 5.01
107 108 7.833285 ACCAAACTAAAGAAGATTTTAGGCA 57.167 32.000 9.53 0.00 42.33 4.75
108 109 8.242053 GGTACCAAACTAAAGAAGATTTTAGGC 58.758 37.037 7.15 0.00 42.33 3.93
109 110 9.292195 TGGTACCAAACTAAAGAAGATTTTAGG 57.708 33.333 13.60 0.00 42.33 2.69
111 112 9.856162 ACTGGTACCAAACTAAAGAAGATTTTA 57.144 29.630 17.11 0.00 0.00 1.52
112 113 8.762481 ACTGGTACCAAACTAAAGAAGATTTT 57.238 30.769 17.11 0.00 0.00 1.82
113 114 8.762481 AACTGGTACCAAACTAAAGAAGATTT 57.238 30.769 17.11 0.00 0.00 2.17
114 115 8.762481 AAACTGGTACCAAACTAAAGAAGATT 57.238 30.769 17.11 0.00 0.00 2.40
116 117 9.280174 CATAAACTGGTACCAAACTAAAGAAGA 57.720 33.333 17.11 0.00 0.00 2.87
117 118 8.512138 CCATAAACTGGTACCAAACTAAAGAAG 58.488 37.037 17.11 2.37 40.49 2.85
118 119 7.449086 CCCATAAACTGGTACCAAACTAAAGAA 59.551 37.037 17.11 0.00 44.30 2.52
119 120 6.943718 CCCATAAACTGGTACCAAACTAAAGA 59.056 38.462 17.11 0.00 44.30 2.52
120 121 6.943718 TCCCATAAACTGGTACCAAACTAAAG 59.056 38.462 17.11 4.72 44.30 1.85
121 122 6.850234 TCCCATAAACTGGTACCAAACTAAA 58.150 36.000 17.11 0.00 44.30 1.85
122 123 6.451292 TCCCATAAACTGGTACCAAACTAA 57.549 37.500 17.11 1.00 44.30 2.24
123 124 6.645884 ATCCCATAAACTGGTACCAAACTA 57.354 37.500 17.11 7.45 44.30 2.24
124 125 5.530176 ATCCCATAAACTGGTACCAAACT 57.470 39.130 17.11 5.31 44.30 2.66
125 126 5.126545 GGAATCCCATAAACTGGTACCAAAC 59.873 44.000 17.11 0.00 44.30 2.93
126 127 5.222358 TGGAATCCCATAAACTGGTACCAAA 60.222 40.000 17.11 2.14 44.30 3.28
127 128 4.292571 TGGAATCCCATAAACTGGTACCAA 59.707 41.667 17.11 0.39 44.30 3.67
128 129 3.853181 TGGAATCCCATAAACTGGTACCA 59.147 43.478 15.39 15.39 44.30 3.25
129 130 4.165372 TCTGGAATCCCATAAACTGGTACC 59.835 45.833 4.43 4.43 44.30 3.34
130 131 5.367945 TCTGGAATCCCATAAACTGGTAC 57.632 43.478 0.00 0.00 44.30 3.34
131 132 5.431731 ACATCTGGAATCCCATAAACTGGTA 59.568 40.000 0.00 0.00 44.30 3.25
132 133 4.230502 ACATCTGGAATCCCATAAACTGGT 59.769 41.667 0.00 0.00 44.30 4.00
133 134 4.796606 ACATCTGGAATCCCATAAACTGG 58.203 43.478 0.00 0.00 42.59 4.00
134 135 4.823989 GGACATCTGGAATCCCATAAACTG 59.176 45.833 0.00 0.00 42.59 3.16
135 136 4.478317 TGGACATCTGGAATCCCATAAACT 59.522 41.667 0.00 0.00 42.59 2.66
136 137 4.792068 TGGACATCTGGAATCCCATAAAC 58.208 43.478 0.00 0.00 42.59 2.01
137 138 4.141181 CCTGGACATCTGGAATCCCATAAA 60.141 45.833 0.00 0.00 42.59 1.40
138 139 3.395607 CCTGGACATCTGGAATCCCATAA 59.604 47.826 0.00 0.00 42.59 1.90
139 140 2.981784 CCTGGACATCTGGAATCCCATA 59.018 50.000 0.00 0.00 42.59 2.74
140 141 1.779092 CCTGGACATCTGGAATCCCAT 59.221 52.381 0.00 0.00 42.59 4.00
141 142 1.216064 CCTGGACATCTGGAATCCCA 58.784 55.000 0.00 0.00 40.95 4.37
142 143 0.179006 GCCTGGACATCTGGAATCCC 60.179 60.000 0.00 0.00 36.68 3.85
143 144 0.179006 GGCCTGGACATCTGGAATCC 60.179 60.000 0.00 0.00 36.68 3.01
144 145 0.842635 AGGCCTGGACATCTGGAATC 59.157 55.000 3.11 0.00 36.68 2.52
145 146 0.549950 CAGGCCTGGACATCTGGAAT 59.450 55.000 26.14 0.00 36.68 3.01
146 147 0.842030 ACAGGCCTGGACATCTGGAA 60.842 55.000 35.42 0.00 36.68 3.53
147 148 1.229625 ACAGGCCTGGACATCTGGA 60.230 57.895 35.42 0.00 36.68 3.86
148 149 1.222936 GACAGGCCTGGACATCTGG 59.777 63.158 35.42 8.62 37.51 3.86
149 150 1.222936 GGACAGGCCTGGACATCTG 59.777 63.158 35.42 10.38 34.19 2.90
150 151 2.362369 CGGACAGGCCTGGACATCT 61.362 63.158 35.42 14.69 34.19 2.90
151 152 2.187946 CGGACAGGCCTGGACATC 59.812 66.667 35.42 23.15 34.19 3.06
152 153 3.402681 CCGGACAGGCCTGGACAT 61.403 66.667 35.42 15.93 33.75 3.06
153 154 4.631740 TCCGGACAGGCCTGGACA 62.632 66.667 35.42 12.52 40.77 4.02
154 155 4.083862 GTCCGGACAGGCCTGGAC 62.084 72.222 35.42 27.62 45.87 4.02
155 156 3.924013 ATGTCCGGACAGGCCTGGA 62.924 63.158 37.98 21.11 45.48 3.86
156 157 2.484287 AAATGTCCGGACAGGCCTGG 62.484 60.000 37.98 18.97 45.48 4.45
157 158 0.609131 AAAATGTCCGGACAGGCCTG 60.609 55.000 37.98 31.60 45.48 4.85
158 159 0.112412 AAAAATGTCCGGACAGGCCT 59.888 50.000 37.98 21.89 45.48 5.19
159 160 0.526211 GAAAAATGTCCGGACAGGCC 59.474 55.000 37.98 22.18 45.48 5.19
160 161 1.534729 AGAAAAATGTCCGGACAGGC 58.465 50.000 37.98 24.60 45.48 4.85
161 162 5.414454 TGATTAAGAAAAATGTCCGGACAGG 59.586 40.000 37.98 0.00 45.48 4.00
162 163 6.494893 TGATTAAGAAAAATGTCCGGACAG 57.505 37.500 37.98 0.00 45.48 3.51
163 164 6.657117 TGATGATTAAGAAAAATGTCCGGACA 59.343 34.615 37.79 37.79 46.44 4.02
164 165 7.083875 TGATGATTAAGAAAAATGTCCGGAC 57.916 36.000 28.17 28.17 0.00 4.79
165 166 7.880160 ATGATGATTAAGAAAAATGTCCGGA 57.120 32.000 0.00 0.00 0.00 5.14
166 167 7.975616 ACAATGATGATTAAGAAAAATGTCCGG 59.024 33.333 0.00 0.00 0.00 5.14
167 168 8.915871 ACAATGATGATTAAGAAAAATGTCCG 57.084 30.769 0.00 0.00 0.00 4.79
173 174 9.571810 CCATCGAACAATGATGATTAAGAAAAA 57.428 29.630 4.61 0.00 44.76 1.94
174 175 7.701924 GCCATCGAACAATGATGATTAAGAAAA 59.298 33.333 4.61 0.00 44.76 2.29
175 176 7.148103 TGCCATCGAACAATGATGATTAAGAAA 60.148 33.333 4.61 0.00 44.76 2.52
176 177 6.318396 TGCCATCGAACAATGATGATTAAGAA 59.682 34.615 4.61 0.00 44.76 2.52
177 178 5.821995 TGCCATCGAACAATGATGATTAAGA 59.178 36.000 4.61 0.00 44.76 2.10
178 179 6.063640 TGCCATCGAACAATGATGATTAAG 57.936 37.500 4.61 0.00 44.76 1.85
179 180 6.448207 TTGCCATCGAACAATGATGATTAA 57.552 33.333 4.61 0.00 44.76 1.40
180 181 6.448207 TTTGCCATCGAACAATGATGATTA 57.552 33.333 4.61 0.00 44.76 1.75
181 182 4.987408 TTGCCATCGAACAATGATGATT 57.013 36.364 4.61 0.00 44.76 2.57
182 183 4.987408 TTTGCCATCGAACAATGATGAT 57.013 36.364 4.61 0.00 44.76 2.45
183 184 4.780275 TTTTGCCATCGAACAATGATGA 57.220 36.364 4.61 0.00 44.76 2.92
184 185 4.925054 ACTTTTTGCCATCGAACAATGATG 59.075 37.500 0.00 0.00 42.26 3.07
185 186 5.138125 ACTTTTTGCCATCGAACAATGAT 57.862 34.783 0.00 0.00 0.00 2.45
186 187 4.582701 ACTTTTTGCCATCGAACAATGA 57.417 36.364 0.00 0.00 0.00 2.57
187 188 6.949578 AATACTTTTTGCCATCGAACAATG 57.050 33.333 0.00 0.00 0.00 2.82
188 189 7.795859 CAAAATACTTTTTGCCATCGAACAAT 58.204 30.769 0.00 0.00 43.67 2.71
189 190 7.171447 CAAAATACTTTTTGCCATCGAACAA 57.829 32.000 0.00 0.00 43.67 2.83
190 191 6.761731 CAAAATACTTTTTGCCATCGAACA 57.238 33.333 0.00 0.00 43.67 3.18
217 218 3.000925 CCTTCAAATATTCCGACCGAACG 59.999 47.826 0.00 0.00 31.79 3.95
218 219 3.311596 CCCTTCAAATATTCCGACCGAAC 59.688 47.826 0.00 0.00 31.79 3.95
219 220 3.537580 CCCTTCAAATATTCCGACCGAA 58.462 45.455 0.00 0.00 34.14 4.30
220 221 2.158871 CCCCTTCAAATATTCCGACCGA 60.159 50.000 0.00 0.00 0.00 4.69
221 222 2.218603 CCCCTTCAAATATTCCGACCG 58.781 52.381 0.00 0.00 0.00 4.79
222 223 2.092049 ACCCCCTTCAAATATTCCGACC 60.092 50.000 0.00 0.00 0.00 4.79
223 224 3.292492 ACCCCCTTCAAATATTCCGAC 57.708 47.619 0.00 0.00 0.00 4.79
224 225 5.656549 AATACCCCCTTCAAATATTCCGA 57.343 39.130 0.00 0.00 0.00 4.55
225 226 6.724893 AAAATACCCCCTTCAAATATTCCG 57.275 37.500 0.00 0.00 0.00 4.30
248 249 3.534357 TCCCCTACAATGCCTCAAAAA 57.466 42.857 0.00 0.00 0.00 1.94
249 250 3.756082 ATCCCCTACAATGCCTCAAAA 57.244 42.857 0.00 0.00 0.00 2.44
250 251 5.402054 AATATCCCCTACAATGCCTCAAA 57.598 39.130 0.00 0.00 0.00 2.69
251 252 5.402054 AAATATCCCCTACAATGCCTCAA 57.598 39.130 0.00 0.00 0.00 3.02
252 253 5.402054 AAAATATCCCCTACAATGCCTCA 57.598 39.130 0.00 0.00 0.00 3.86
274 275 2.110899 TCCCCCTACAATGCCTCAAAAA 59.889 45.455 0.00 0.00 0.00 1.94
275 276 1.713647 TCCCCCTACAATGCCTCAAAA 59.286 47.619 0.00 0.00 0.00 2.44
276 277 1.377690 TCCCCCTACAATGCCTCAAA 58.622 50.000 0.00 0.00 0.00 2.69
277 278 1.607225 ATCCCCCTACAATGCCTCAA 58.393 50.000 0.00 0.00 0.00 3.02
278 279 1.607225 AATCCCCCTACAATGCCTCA 58.393 50.000 0.00 0.00 0.00 3.86
279 280 2.310538 CAAATCCCCCTACAATGCCTC 58.689 52.381 0.00 0.00 0.00 4.70
280 281 1.062962 CCAAATCCCCCTACAATGCCT 60.063 52.381 0.00 0.00 0.00 4.75
281 282 1.342975 ACCAAATCCCCCTACAATGCC 60.343 52.381 0.00 0.00 0.00 4.40
282 283 1.756538 CACCAAATCCCCCTACAATGC 59.243 52.381 0.00 0.00 0.00 3.56
283 284 3.023832 GTCACCAAATCCCCCTACAATG 58.976 50.000 0.00 0.00 0.00 2.82
284 285 2.926329 AGTCACCAAATCCCCCTACAAT 59.074 45.455 0.00 0.00 0.00 2.71
285 286 2.354328 AGTCACCAAATCCCCCTACAA 58.646 47.619 0.00 0.00 0.00 2.41
286 287 2.053747 AGTCACCAAATCCCCCTACA 57.946 50.000 0.00 0.00 0.00 2.74
287 288 3.264964 TGTAAGTCACCAAATCCCCCTAC 59.735 47.826 0.00 0.00 0.00 3.18
288 289 3.533146 TGTAAGTCACCAAATCCCCCTA 58.467 45.455 0.00 0.00 0.00 3.53
289 290 2.354328 TGTAAGTCACCAAATCCCCCT 58.646 47.619 0.00 0.00 0.00 4.79
290 291 2.891191 TGTAAGTCACCAAATCCCCC 57.109 50.000 0.00 0.00 0.00 5.40
307 308 0.541863 CCTCGGGGCAACTCTAATGT 59.458 55.000 0.00 0.00 31.17 2.71
323 324 2.901839 TGGACCAAACTACACTACCCTC 59.098 50.000 0.00 0.00 0.00 4.30
330 331 3.751518 AGAACCATGGACCAAACTACAC 58.248 45.455 21.47 0.00 0.00 2.90
331 332 4.595781 ACTAGAACCATGGACCAAACTACA 59.404 41.667 21.47 0.00 0.00 2.74
341 342 2.626785 TGAACCCACTAGAACCATGGA 58.373 47.619 21.47 0.00 35.33 3.41
452 462 8.017946 CAGGCACAAGAAACTTCTAATAAGAAC 58.982 37.037 0.00 0.00 36.80 3.01
511 525 0.330604 AACTGCATCCTGTGGCTGAT 59.669 50.000 0.00 0.00 33.75 2.90
518 532 5.130975 TCCTTGTATCATAACTGCATCCTGT 59.869 40.000 0.00 0.00 0.00 4.00
519 533 5.614308 TCCTTGTATCATAACTGCATCCTG 58.386 41.667 0.00 0.00 0.00 3.86
520 534 5.894298 TCCTTGTATCATAACTGCATCCT 57.106 39.130 0.00 0.00 0.00 3.24
521 535 6.511767 CGTTTCCTTGTATCATAACTGCATCC 60.512 42.308 0.00 0.00 0.00 3.51
522 536 6.257849 TCGTTTCCTTGTATCATAACTGCATC 59.742 38.462 0.00 0.00 0.00 3.91
693 707 5.536916 TGGCCGGAGAAGAATTTTCTTTTAA 59.463 36.000 5.05 0.00 46.84 1.52
698 712 2.305927 TCTGGCCGGAGAAGAATTTTCT 59.694 45.455 11.27 3.49 39.74 2.52
711 725 2.354729 TGGGAACATTCTGGCCGG 59.645 61.111 4.71 4.71 33.40 6.13
724 738 4.408821 GGTGGCACGAGCATGGGA 62.409 66.667 12.17 0.00 44.61 4.37
934 948 1.265365 GTTGTTGTGCCTCTGCTCTTC 59.735 52.381 0.00 0.00 38.71 2.87
1220 1295 7.604927 ACGAAGGATCAGATTAGCTACTAGTAG 59.395 40.741 23.25 23.25 36.29 2.57
1221 1296 7.388224 CACGAAGGATCAGATTAGCTACTAGTA 59.612 40.741 1.89 1.89 0.00 1.82
1222 1297 6.205853 CACGAAGGATCAGATTAGCTACTAGT 59.794 42.308 0.00 0.00 0.00 2.57
1291 1373 5.202814 ATGCATGCATGAACGATCCATCG 62.203 47.826 31.74 7.42 44.32 3.84
1347 1444 1.129998 CTGGAGACTGTGTACGTACCG 59.870 57.143 22.43 13.11 0.00 4.02
1355 1452 2.683768 AGGAGAAACTGGAGACTGTGT 58.316 47.619 0.00 0.00 42.21 3.72
1356 1453 3.181461 ACAAGGAGAAACTGGAGACTGTG 60.181 47.826 0.00 0.00 42.21 3.66
1397 1590 0.179134 AAGCACACTACTCGATCGGC 60.179 55.000 16.41 7.95 0.00 5.54
1445 1647 1.461268 TGAGGTCTCCTTGGCACCA 60.461 57.895 9.37 0.00 31.76 4.17
1613 1830 1.345741 GGATCCCTCTCGCAATCATGA 59.654 52.381 0.00 0.00 0.00 3.07
1671 1915 3.611766 AAACTGACGTCCAATAGAGGG 57.388 47.619 14.12 0.00 34.56 4.30
1711 1959 6.149807 TCAAATTTGGTATCTTCCGTTGTACC 59.850 38.462 17.90 0.00 37.65 3.34
1744 2029 2.223433 CGAGGCTTTGCAAATGAGGATC 60.223 50.000 13.23 4.87 0.00 3.36
1811 2098 3.368948 GGTGGAATCTGGAGAGTGAGAAC 60.369 52.174 0.00 0.00 0.00 3.01
2458 5170 2.542595 GACAGTATAATTGTTCCCCGCG 59.457 50.000 0.00 0.00 0.00 6.46
2591 5306 2.734606 TCTTGTGTGCGTAGTATGTTGC 59.265 45.455 0.00 0.00 0.00 4.17
2786 5549 7.907214 ACAGTTAGCTCCAATAGTTAAAGTG 57.093 36.000 0.00 0.00 33.29 3.16
2817 5583 5.183713 TCCAATCAAAATGAAGCACTAGGTG 59.816 40.000 0.00 0.00 36.51 4.00
2839 5615 3.013921 TCCAAATAAAGCCACGTGATCC 58.986 45.455 19.30 4.86 0.00 3.36
2841 5617 4.097892 GGATTCCAAATAAAGCCACGTGAT 59.902 41.667 19.30 1.58 32.40 3.06
2922 5754 0.108329 ACCTTCCCTTATCGTGCGTG 60.108 55.000 0.00 0.00 0.00 5.34
2923 5755 0.108329 CACCTTCCCTTATCGTGCGT 60.108 55.000 0.00 0.00 0.00 5.24
3077 5990 8.200792 ACAAAAACAAATTCACTGGCTTATACA 58.799 29.630 0.00 0.00 0.00 2.29
3127 6042 2.839486 ACATCCAGAACTTCGCTTGA 57.161 45.000 0.00 0.00 0.00 3.02
3128 6043 3.589988 ACTACATCCAGAACTTCGCTTG 58.410 45.455 0.00 0.00 0.00 4.01
3130 6045 2.826128 TGACTACATCCAGAACTTCGCT 59.174 45.455 0.00 0.00 0.00 4.93
3131 6046 3.232213 TGACTACATCCAGAACTTCGC 57.768 47.619 0.00 0.00 0.00 4.70
3132 6047 3.614616 GCTTGACTACATCCAGAACTTCG 59.385 47.826 0.00 0.00 0.00 3.79
3133 6048 3.614616 CGCTTGACTACATCCAGAACTTC 59.385 47.826 0.00 0.00 0.00 3.01
3135 6050 2.826128 TCGCTTGACTACATCCAGAACT 59.174 45.455 0.00 0.00 0.00 3.01
3136 6051 3.232213 TCGCTTGACTACATCCAGAAC 57.768 47.619 0.00 0.00 0.00 3.01
3138 6053 2.826128 ACTTCGCTTGACTACATCCAGA 59.174 45.455 0.00 0.00 0.00 3.86
3225 7236 5.711506 AGACACATGCTGAAATATGGTTTCA 59.288 36.000 0.00 7.57 36.98 2.69
3231 7242 7.197703 TGCATTAAGACACATGCTGAAATATG 58.802 34.615 5.77 0.00 45.21 1.78
3237 7248 5.450592 TTTTGCATTAAGACACATGCTGA 57.549 34.783 5.77 0.00 45.21 4.26
3265 7284 1.926561 CGTAAGGTTAACGTAGGGGC 58.073 55.000 0.43 0.00 35.66 5.80
3317 7336 1.208259 AACCGTGTTTCGTCCGTAAC 58.792 50.000 2.73 2.73 37.94 2.50
3318 7337 1.857837 GAAACCGTGTTTCGTCCGTAA 59.142 47.619 11.88 0.00 37.94 3.18
3321 7340 0.863144 ATGAAACCGTGTTTCGTCCG 59.137 50.000 18.41 0.00 37.94 4.79
3332 7427 0.312416 TTTCCAACCGCATGAAACCG 59.688 50.000 0.00 0.00 0.00 4.44
3378 7476 3.437395 TGCGTATGATAAAAACTGCGGTT 59.563 39.130 4.68 4.68 37.24 4.44
3436 7574 1.094785 GCCCTGTACGTCAATGCAAT 58.905 50.000 0.00 0.00 0.00 3.56
3443 7581 1.066716 GTACATTGGCCCTGTACGTCA 60.067 52.381 22.65 1.55 39.51 4.35
3475 7613 5.654603 TGTACTGGTAGAACATGTGGTAG 57.345 43.478 0.00 0.00 0.00 3.18
3577 7715 3.666253 TCGAGCGCGGTGTCAAGA 61.666 61.111 18.92 4.12 38.28 3.02
4117 8255 0.529378 CCGCGTAGTAGTCTTGGGTT 59.471 55.000 4.92 0.00 0.00 4.11
4523 8712 2.579201 GCTCCTAGCAAGCCGACA 59.421 61.111 4.44 0.00 41.89 4.35
4658 8847 1.005924 CATAGCTTTTGGGGGTCCAGT 59.994 52.381 0.00 0.00 45.04 4.00
4898 9090 4.607557 CGCGAGGTACACAAGTTAAAACAG 60.608 45.833 0.00 0.00 0.00 3.16
4920 9115 5.344933 TCGATCTACTCATTTTGTCACAACG 59.655 40.000 0.00 0.00 0.00 4.10
4925 9120 5.410924 CCAGTCGATCTACTCATTTTGTCA 58.589 41.667 0.00 0.00 0.00 3.58
5144 9380 2.854076 CCCCCACCTCCAAAGCTT 59.146 61.111 0.00 0.00 0.00 3.74
5294 9530 1.001924 CTGCCATGCACAACGTTTACA 60.002 47.619 0.00 0.00 33.79 2.41
5354 9590 0.108615 CTAGTGCGTGGTTCCTCTGG 60.109 60.000 0.00 0.00 0.00 3.86
5355 9591 0.603569 ACTAGTGCGTGGTTCCTCTG 59.396 55.000 0.00 0.00 0.00 3.35
5364 9600 7.167635 CACCTCTACATATTAAACTAGTGCGTG 59.832 40.741 0.00 0.00 0.00 5.34
5387 9623 1.677217 GGTCATGACTTGAGCCTCACC 60.677 57.143 24.50 0.86 45.24 4.02
5437 9673 3.370633 GGAGAAATGACCTGGGTCTTACC 60.371 52.174 18.92 10.03 44.80 2.85
5798 10246 5.179452 TCCAGTTGGATAAGGGAAAAGAG 57.821 43.478 0.00 0.00 39.78 2.85
5884 10333 3.328237 AAAGACAACGCCTTGTTTACG 57.672 42.857 2.53 0.00 40.93 3.18
5889 10338 3.942748 TCTTGTTAAAGACAACGCCTTGT 59.057 39.130 0.35 0.35 43.13 3.16
6023 10472 1.458588 CCAGTCCCCCTAGCTCCTC 60.459 68.421 0.00 0.00 0.00 3.71
6024 10473 2.699496 CCAGTCCCCCTAGCTCCT 59.301 66.667 0.00 0.00 0.00 3.69
6025 10474 3.164977 GCCAGTCCCCCTAGCTCC 61.165 72.222 0.00 0.00 0.00 4.70
6028 10477 3.483869 CCTGCCAGTCCCCCTAGC 61.484 72.222 0.00 0.00 0.00 3.42
6030 10479 2.368594 CTCCTGCCAGTCCCCCTA 59.631 66.667 0.00 0.00 0.00 3.53
6058 10507 3.139077 GGTTGCTATAAGACAATCGGGG 58.861 50.000 0.00 0.00 0.00 5.73
6081 11295 0.769776 ATGGAGGACCCCAGCCTATG 60.770 60.000 7.63 0.00 39.97 2.23
6084 11298 2.367512 GATGGAGGACCCCAGCCT 60.368 66.667 6.09 0.00 39.97 4.58
6107 11321 6.924612 CACAAATGTTTCCACTCATCAAATCA 59.075 34.615 0.00 0.00 0.00 2.57
6113 11327 3.005684 TGCCACAAATGTTTCCACTCATC 59.994 43.478 0.00 0.00 0.00 2.92
6135 11349 0.104855 ATCGCGTGTGATATGGCTGT 59.895 50.000 5.77 0.00 0.00 4.40
6183 11397 2.634453 TCGCCTCATGTATGATGGATGT 59.366 45.455 11.87 0.00 36.02 3.06
6242 11456 0.602638 TGCGAGTTCGTCTTGGCAAT 60.603 50.000 0.00 0.00 42.22 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.